Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051787.t1 | AES92177.2 | 99.1 | 226 | 2 | 0 | 5 | 230 | 267 | 492 | 1.30E-127 | 465.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051787.t1 | A7PZL3 | 41.1 | 202 | 117 | 2 | 5 | 205 | 255 | 455 | 4.5e-41 | 169.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051787.t1 | G7JS79 | 99.1 | 226 | 2 | 0 | 5 | 230 | 267 | 492 | 9.0e-128 | 465.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051781 | MS.gene051787 | 0.99167 | 6.76E-189 | -1.69E-46 |
| MS.gene051784 | MS.gene051787 | 0.966627 | 3.57E-126 | -1.69E-46 |
| MS.gene051787 | MS.gene06550 | 0.811097 | 8.30E-51 | -1.69E-46 |
| MS.gene051787 | MS.gene06619 | 0.808 | 3.84E-50 | -1.69E-46 |
| MS.gene051787 | MS.gene06793 | 0.811012 | 8.66E-51 | -1.69E-46 |
| MS.gene051787 | MS.gene072777 | 0.829311 | 5.53E-55 | -1.69E-46 |
| MS.gene051787 | MS.gene21620 | 0.822621 | 2.15E-53 | -1.69E-46 |
| MS.gene051787 | MS.gene22470 | 0.811183 | 7.95E-51 | -1.69E-46 |
| MS.gene051787 | MS.gene24790 | 0.987612 | 6.85E-171 | -1.69E-46 |
| MS.gene051787 | MS.gene24792 | 0.981332 | 2.47E-152 | -1.69E-46 |
| MS.gene051787 | MS.gene42070 | 0.822235 | 2.64E-53 | -1.69E-46 |
| MS.gene051787 | MS.gene42510 | 0.822108 | 2.83E-53 | -1.69E-46 |
| MS.gene051787 | MS.gene42512 | 0.830027 | 3.70E-55 | -1.69E-46 |
| MS.gene051787 | MS.gene43740 | 0.813692 | 2.25E-51 | -1.69E-46 |
| MS.gene051787 | MS.gene44844 | 0.820435 | 6.87E-53 | -1.69E-46 |
| MS.gene051787 | MS.gene57732 | 0.833172 | 6.21E-56 | -1.69E-46 |
| MS.gene051787 | MS.gene57734 | 0.813728 | 2.21E-51 | -1.69E-46 |
| MS.gene051787 | MS.gene58736 | 0.807583 | 4.71E-50 | -1.69E-46 |
| MS.gene051787 | MS.gene69797 | 0.823951 | 1.05E-53 | -1.69E-46 |
| MS.gene051787 | MS.gene77197 | 0.808119 | 3.62E-50 | -1.69E-46 |
| MS.gene051787 | MS.gene84657 | 0.84458 | 6.92E-59 | -1.69E-46 |
| MS.gene051787 | MS.gene97685 | 0.806643 | 7.45E-50 | -1.69E-46 |
| MS.gene051787 | MS.gene99224 | 0.803633 | 3.18E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051787.t1 | MTR_4g124980 | 99.115 | 226 | 2 | 0 | 5 | 230 | 267 | 492 | 1.59e-164 | 463 |
| MS.gene051787.t1 | MTR_2g042740 | 85.333 | 225 | 33 | 0 | 5 | 229 | 249 | 473 | 1.03e-143 | 410 |
| MS.gene051787.t1 | MTR_7g110710 | 45.536 | 224 | 113 | 3 | 5 | 222 | 235 | 455 | 1.00e-56 | 187 |
| MS.gene051787.t1 | MTR_7g110710 | 45.536 | 224 | 113 | 3 | 5 | 222 | 235 | 455 | 1.07e-56 | 187 |
| MS.gene051787.t1 | MTR_8g098840 | 42.211 | 199 | 113 | 2 | 5 | 202 | 236 | 433 | 2.62e-52 | 176 |
| MS.gene051787.t1 | MTR_2g435340 | 38.806 | 201 | 122 | 1 | 5 | 205 | 164 | 363 | 1.95e-51 | 171 |
| MS.gene051787.t1 | MTR_1g086030 | 45.631 | 206 | 102 | 4 | 5 | 207 | 170 | 368 | 5.14e-51 | 171 |
| MS.gene051787.t1 | MTR_2g435340 | 38.806 | 201 | 122 | 1 | 5 | 205 | 229 | 428 | 6.03e-51 | 171 |
| MS.gene051787.t1 | MTR_1g086030 | 45.631 | 206 | 102 | 4 | 5 | 207 | 274 | 472 | 2.93e-50 | 171 |
| MS.gene051787.t1 | MTR_3g096330 | 43.961 | 207 | 104 | 5 | 5 | 206 | 268 | 467 | 3.04e-49 | 172 |
| MS.gene051787.t1 | MTR_7g078680 | 41.584 | 202 | 116 | 2 | 5 | 205 | 247 | 447 | 5.84e-49 | 167 |
| MS.gene051787.t1 | MTR_1g100040 | 41.584 | 202 | 116 | 2 | 5 | 205 | 248 | 448 | 4.39e-47 | 162 |
| MS.gene051787.t1 | MTR_4g120730 | 37.624 | 202 | 125 | 1 | 5 | 206 | 232 | 432 | 7.64e-46 | 158 |
| MS.gene051787.t1 | MTR_1g100060 | 39.604 | 202 | 120 | 2 | 5 | 205 | 285 | 485 | 1.35e-44 | 156 |
| MS.gene051787.t1 | MTR_3g449590 | 41.204 | 216 | 122 | 5 | 5 | 218 | 239 | 451 | 3.18e-44 | 154 |
| MS.gene051787.t1 | MTR_5g090160 | 41.667 | 204 | 114 | 3 | 5 | 205 | 237 | 438 | 3.40e-44 | 154 |
| MS.gene051787.t1 | MTR_8g028725 | 36.444 | 225 | 131 | 4 | 5 | 228 | 247 | 460 | 7.34e-44 | 153 |
| MS.gene051787.t1 | MTR_1g100050 | 38.235 | 204 | 124 | 2 | 5 | 207 | 242 | 444 | 1.72e-43 | 152 |
| MS.gene051787.t1 | MTR_7g088550 | 42.029 | 207 | 115 | 3 | 5 | 207 | 242 | 447 | 2.35e-42 | 149 |
| MS.gene051787.t1 | MTR_1g099850 | 37.129 | 202 | 125 | 2 | 5 | 205 | 247 | 447 | 2.14e-40 | 144 |
| MS.gene051787.t1 | MTR_6g048610 | 35.429 | 175 | 76 | 2 | 6 | 180 | 24 | 161 | 1.07e-24 | 95.9 |
| MS.gene051787.t1 | MTR_6g005630 | 28.365 | 208 | 125 | 7 | 8 | 209 | 222 | 411 | 1.86e-13 | 69.3 |
| MS.gene051787.t1 | MTR_2g042760 | 50.000 | 60 | 19 | 2 | 65 | 123 | 1 | 50 | 1.09e-11 | 58.9 |
| MS.gene051787.t1 | MTR_8g008700 | 27.778 | 198 | 103 | 4 | 9 | 202 | 128 | 289 | 5.29e-11 | 61.6 |
| MS.gene051787.t1 | MTR_2g103410 | 27.041 | 196 | 125 | 4 | 12 | 202 | 246 | 428 | 5.46e-11 | 62.0 |
| MS.gene051787.t1 | MTR_1g052315 | 25.225 | 222 | 140 | 6 | 8 | 220 | 245 | 449 | 7.35e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051787.t1 | AT3G42950 | 77.333 | 225 | 51 | 0 | 5 | 229 | 259 | 483 | 3.04e-132 | 381 |
| MS.gene051787.t1 | AT1G19170 | 77.778 | 225 | 50 | 0 | 5 | 229 | 281 | 505 | 6.12e-131 | 379 |
| MS.gene051787.t1 | AT3G48950 | 39.286 | 224 | 134 | 2 | 5 | 227 | 238 | 460 | 1.39e-51 | 174 |
| MS.gene051787.t1 | AT4G23500 | 41.518 | 224 | 128 | 3 | 5 | 227 | 260 | 481 | 9.67e-51 | 172 |
| MS.gene051787.t1 | AT2G23900 | 41.584 | 202 | 116 | 2 | 5 | 205 | 249 | 449 | 2.31e-50 | 171 |
| MS.gene051787.t1 | AT5G41870 | 43.750 | 208 | 114 | 3 | 5 | 212 | 238 | 442 | 2.76e-50 | 170 |
| MS.gene051787.t1 | AT4G33440 | 43.781 | 201 | 111 | 2 | 5 | 205 | 264 | 462 | 3.25e-50 | 170 |
| MS.gene051787.t1 | AT3G62110 | 44.681 | 188 | 103 | 1 | 5 | 191 | 235 | 422 | 4.31e-50 | 170 |
| MS.gene051787.t1 | AT3G62110 | 44.681 | 188 | 103 | 1 | 5 | 191 | 235 | 422 | 4.31e-50 | 170 |
| MS.gene051787.t1 | AT3G61490 | 38.053 | 226 | 136 | 3 | 5 | 229 | 237 | 459 | 9.07e-47 | 161 |
| MS.gene051787.t1 | AT3G61490 | 38.053 | 226 | 136 | 3 | 5 | 229 | 237 | 459 | 9.07e-47 | 161 |
| MS.gene051787.t1 | AT3G61490 | 38.053 | 226 | 136 | 3 | 5 | 229 | 237 | 459 | 9.07e-47 | 161 |
| MS.gene051787.t1 | AT3G61490 | 38.053 | 226 | 136 | 3 | 5 | 229 | 252 | 474 | 1.26e-46 | 161 |
| MS.gene051787.t1 | AT3G06770 | 38.916 | 203 | 123 | 1 | 5 | 207 | 148 | 349 | 4.77e-46 | 157 |
| MS.gene051787.t1 | AT3G61490 | 38.889 | 216 | 128 | 3 | 5 | 219 | 350 | 562 | 4.83e-46 | 161 |
| MS.gene051787.t1 | AT3G06770 | 38.916 | 203 | 123 | 1 | 5 | 207 | 166 | 367 | 5.45e-46 | 157 |
| MS.gene051787.t1 | AT3G06770 | 38.916 | 203 | 123 | 1 | 5 | 207 | 166 | 367 | 5.45e-46 | 157 |
| MS.gene051787.t1 | AT3G06770 | 38.916 | 203 | 123 | 1 | 5 | 207 | 235 | 436 | 1.89e-45 | 157 |
| MS.gene051787.t1 | AT3G06770 | 38.916 | 203 | 123 | 1 | 5 | 207 | 236 | 437 | 1.90e-45 | 157 |
| MS.gene051787.t1 | AT4G23820 | 41.791 | 201 | 115 | 2 | 5 | 205 | 233 | 431 | 2.18e-45 | 157 |
| MS.gene051787.t1 | AT3G16850 | 41.791 | 201 | 114 | 2 | 5 | 205 | 232 | 429 | 1.19e-42 | 150 |
| MS.gene051787.t1 | AT5G49215 | 33.654 | 208 | 135 | 2 | 5 | 210 | 233 | 439 | 2.80e-39 | 140 |
| MS.gene051787.t1 | AT5G49215 | 33.654 | 208 | 135 | 2 | 5 | 210 | 235 | 441 | 2.95e-39 | 140 |
| MS.gene051787.t1 | AT1G56710 | 29.126 | 206 | 123 | 8 | 5 | 202 | 236 | 426 | 1.36e-13 | 69.7 |
| MS.gene051787.t1 | AT1G80170 | 28.141 | 199 | 124 | 5 | 10 | 202 | 238 | 423 | 1.67e-13 | 69.3 |
| MS.gene051787.t1 | AT5G44830 | 27.136 | 199 | 126 | 5 | 9 | 202 | 145 | 329 | 4.37e-13 | 67.8 |
| MS.gene051787.t1 | AT3G15720 | 32.370 | 173 | 97 | 6 | 9 | 174 | 194 | 353 | 2.70e-12 | 65.9 |
| MS.gene051787.t1 | AT3G15720 | 32.370 | 173 | 97 | 6 | 9 | 174 | 197 | 356 | 2.74e-12 | 65.9 |
| MS.gene051787.t1 | AT3G15720 | 32.370 | 173 | 97 | 6 | 9 | 174 | 198 | 357 | 2.90e-12 | 65.9 |
| MS.gene051787.t1 | AT3G15720 | 32.370 | 173 | 97 | 6 | 9 | 174 | 134 | 293 | 3.10e-12 | 65.5 |
Find 69 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGTACATGGCCGTGTAAT+AGG | 0.250601 | 8.2:+7681935 | MS.gene051787:CDS |
| AAAGATGTGCTTCTTCTTGT+AGG | 0.280475 | 8.2:-7681903 | None:intergenic |
| AATCTATATCTGTTACATTC+TGG | 0.301959 | 8.2:-7682033 | None:intergenic |
| GATCAGTATGGAATTGCTTA+TGG | 0.314592 | 8.2:+7681312 | MS.gene051787:CDS |
| ATCTTCTTGTGTGGGATTCT+AGG | 0.317361 | 8.2:+7681600 | MS.gene051787:CDS |
| CTCGCATGGAGATGGGAAAA+TGG | 0.361958 | 8.2:-7681960 | None:intergenic |
| ATAAGCTTCACCAGTGTCTA+TGG | 0.362272 | 8.2:+7681791 | MS.gene051787:CDS |
| AAGCTTATGTCTCTTATAAC+TGG | 0.364953 | 8.2:-7681776 | None:intergenic |
| TAGAGCGAACAACGAGGTTT+CGG | 0.369617 | 8.2:-7681359 | None:intergenic |
| AAACCTCGTTGTTCGCTCTA+TGG | 0.372844 | 8.2:+7681362 | MS.gene051787:CDS |
| ATCTATATCTGTTACATTCT+GGG | 0.380122 | 8.2:-7682032 | None:intergenic |
| AAGAGTGGTTGGGATCAGTA+TGG | 0.421829 | 8.2:+7681300 | MS.gene051787:CDS |
| TCTTGTGTGGGATTCTAGGC+GGG | 0.427041 | 8.2:+7681604 | MS.gene051787:CDS |
| TTGTACATGGCCGTGTAATA+GGG | 0.427652 | 8.2:+7681936 | MS.gene051787:CDS |
| ATGTGCGGCAAATAACTTAT+CGG | 0.434253 | 8.2:+7681663 | MS.gene051787:CDS |
| GTAGGGTCATATCCATCATC+AGG | 0.436532 | 8.2:-7681746 | None:intergenic |
| GTTTCGGATCAATATATTCA+TGG | 0.446289 | 8.2:-7681343 | None:intergenic |
| CTTGCTCATTGTACCGATCA+AGG | 0.450350 | 8.2:-7681985 | None:intergenic |
| GTACAATGAGCAAGGACAAC+TGG | 0.482555 | 8.2:+7681994 | MS.gene051787:CDS |
| CAATAGCAATAAAGAGTGGT+TGG | 0.485498 | 8.2:+7681289 | MS.gene051787:CDS |
| TCAAGGTTCTCGCATGGAGA+TGG | 0.487309 | 8.2:-7681968 | None:intergenic |
| CGCACATATCCGCCTCGTCC+AGG | 0.489333 | 8.2:-7681647 | None:intergenic |
| TTTCAGTGTGCATTTGTACA+TGG | 0.494342 | 8.2:+7681923 | MS.gene051787:CDS |
| TACAATGAACACCCTGATGA+TGG | 0.498736 | 8.2:+7681734 | MS.gene051787:CDS |
| TCGTTGTTCGCTCTATGGTC+AGG | 0.500862 | 8.2:+7681367 | MS.gene051787:CDS |
| CTTATAACTGGAAGTGCCGT+AGG | 0.502358 | 8.2:-7681764 | None:intergenic |
| AACAGTGCTGGTATCTCAAT+AGG | 0.503794 | 8.2:+7681536 | MS.gene051787:intron |
| AAGATTCTCCACCGTGACAT+TGG | 0.511289 | 8.2:-7681582 | None:intergenic |
| ATCTGTTACATTCTGGGACA+TGG | 0.514970 | 8.2:-7682026 | None:intergenic |
| CAAGGTTCTCGCATGGAGAT+GGG | 0.517048 | 8.2:-7681967 | None:intergenic |
| CGGTGGAGAATCTTCTTGTG+TGG | 0.518175 | 8.2:+7681591 | MS.gene051787:CDS |
| AATAGCAATAAAGAGTGGTT+GGG | 0.528054 | 8.2:+7681290 | MS.gene051787:CDS |
| TCAATAGGCAGTGAGATGTC+TGG | 0.537106 | 8.2:+7681551 | MS.gene051787:CDS |
| TTGCGAGGATATGTTGATAG+AGG | 0.543214 | 8.2:+7681239 | MS.gene051787:CDS |
| TGGCCATGGAGTTCGTGTGC+CGG | 0.544487 | 8.2:+7681811 | MS.gene051787:CDS |
| TTCACCAGTGTCTATGGCCA+TGG | 0.553675 | 8.2:+7681797 | MS.gene051787:CDS |
| GGTGGAGAATCTTCTTGTGT+GGG | 0.553858 | 8.2:+7681592 | MS.gene051787:CDS |
| CGAAAAGTTACATTTCTCAC+AGG | 0.557026 | 8.2:-7681860 | None:intergenic |
| CGGATCAATATATTCATGGA+AGG | 0.557077 | 8.2:-7681339 | None:intergenic |
| ATAAAGACTGCACCTGGACG+AGG | 0.558213 | 8.2:+7681635 | MS.gene051787:CDS |
| AACTCCATGGCCATAGACAC+TGG | 0.562611 | 8.2:-7681801 | None:intergenic |
| TTCTTGTGTGGGATTCTAGG+CGG | 0.572910 | 8.2:+7681603 | MS.gene051787:CDS |
| GGGATTCTAGGCGGGGTGTG+AGG | 0.573008 | 8.2:+7681612 | MS.gene051787:CDS |
| CTTGTGTGGGATTCTAGGCG+GGG | 0.583944 | 8.2:+7681605 | MS.gene051787:CDS |
| CTCCATGCGAGAACCTTGAT+CGG | 0.593522 | 8.2:+7681972 | MS.gene051787:CDS |
| TACCGATCAAGGTTCTCGCA+TGG | 0.601717 | 8.2:-7681974 | None:intergenic |
| CGTGTGCCGGTACGTATTCA+CGG | 0.606425 | 8.2:+7681824 | MS.gene051787:CDS |
| GTGAGGATAAAGACTGCACC+TGG | 0.609634 | 8.2:+7681629 | MS.gene051787:CDS |
| ACGTTTGAGAATGTCCGTGT+TGG | 0.610358 | 8.2:+7681692 | MS.gene051787:CDS |
| AGTATGGAATTGCTTATGGA+AGG | 0.613405 | 8.2:+7681316 | MS.gene051787:CDS |
| AGAGGACTGTTACATAAGCG+TGG | 0.614203 | 8.2:+7681257 | MS.gene051787:CDS |
| TCACTACCGTGAATACGTAC+CGG | 0.621904 | 8.2:-7681830 | None:intergenic |
| TGATGATGGATATGACCCTA+CGG | 0.624117 | 8.2:+7681748 | MS.gene051787:CDS |
| TTATAACTGGAAGTGCCGTA+GGG | 0.625551 | 8.2:-7681763 | None:intergenic |
| GAGGACTGTTACATAAGCGT+GGG | 0.628169 | 8.2:+7681258 | MS.gene051787:CDS |
| GTACCGGCACACGAACTCCA+TGG | 0.628417 | 8.2:-7681814 | None:intergenic |
| ATAGGCAGTGAGATGTCTGG+TGG | 0.634420 | 8.2:+7681554 | MS.gene051787:CDS |
| CTGGACGAGGCGGATATGTG+CGG | 0.643013 | 8.2:+7681648 | MS.gene051787:CDS |
| CTTGATCGGTACAATGAGCA+AGG | 0.653027 | 8.2:+7681986 | MS.gene051787:CDS |
| GGAAAATGGTCCCTATTACA+CGG | 0.656452 | 8.2:-7681946 | None:intergenic |
| GATGCAATAGCAATAAAGAG+TGG | 0.657676 | 8.2:+7681285 | MS.gene051787:CDS |
| TAGGCAGTGAGATGTCTGGT+GGG | 0.661719 | 8.2:+7681555 | MS.gene051787:CDS |
| TGGTGGGATATCCAATGTCA+CGG | 0.666291 | 8.2:+7681571 | MS.gene051787:CDS |
| TAGGGTCATATCCATCATCA+GGG | 0.672022 | 8.2:-7681745 | None:intergenic |
| AAGACTGCACCTGGACGAGG+CGG | 0.675169 | 8.2:+7681638 | MS.gene051787:CDS |
| GGCTTGCACAGACTCTTGCG+AGG | 0.691384 | 8.2:+7681224 | MS.gene051787:CDS |
| TCTTCATCACAATTCCAACA+CGG | 0.739063 | 8.2:-7681706 | None:intergenic |
| TGGGATATCCAATGTCACGG+TGG | 0.786411 | 8.2:+7681574 | MS.gene051787:CDS |
| TGACCATAGAGCGAACAACG+AGG | 0.809677 | 8.2:-7681365 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCATAATATATGATAAGA+AGG | - | chr8.2:7681488-7681507 | None:intergenic | 15.0% |
| !! | TCATAAAAAAATATGCCAAA+AGG | - | chr8.2:7681438-7681457 | None:intergenic | 20.0% |
| ! | AATCTATATCTGTTACATTC+TGG | - | chr8.2:7682036-7682055 | None:intergenic | 25.0% |
| ! | ATCTATATCTGTTACATTCT+GGG | - | chr8.2:7682035-7682054 | None:intergenic | 25.0% |
| AAAAAATATGCCAAAAGGCA+TGG | - | chr8.2:7681433-7681452 | None:intergenic | 30.0% | |
| AAGCTTATGTCTCTTATAAC+TGG | - | chr8.2:7681779-7681798 | None:intergenic | 30.0% | |
| AATAGCAATAAAGAGTGGTT+GGG | + | chr8.2:7681290-7681309 | MS.gene051787:CDS | 30.0% | |
| GTTTCGGATCAATATATTCA+TGG | - | chr8.2:7681346-7681365 | None:intergenic | 30.0% | |
| TTTATGAAATGAAACAGTGC+TGG | + | chr8.2:7681524-7681543 | MS.gene051787:intron | 30.0% | |
| ! | AAAAATATGCCAAAAGGCAT+GGG | - | chr8.2:7681432-7681451 | None:intergenic | 30.0% |
| AAAGATGTGCTTCTTCTTGT+AGG | - | chr8.2:7681906-7681925 | None:intergenic | 35.0% | |
| AGTATGGAATTGCTTATGGA+AGG | + | chr8.2:7681316-7681335 | MS.gene051787:CDS | 35.0% | |
| ATGTGCGGCAAATAACTTAT+CGG | + | chr8.2:7681663-7681682 | MS.gene051787:CDS | 35.0% | |
| CAATAGCAATAAAGAGTGGT+TGG | + | chr8.2:7681289-7681308 | MS.gene051787:CDS | 35.0% | |
| CGAAAAGTTACATTTCTCAC+AGG | - | chr8.2:7681863-7681882 | None:intergenic | 35.0% | |
| CGGATCAATATATTCATGGA+AGG | - | chr8.2:7681342-7681361 | None:intergenic | 35.0% | |
| GATCAGTATGGAATTGCTTA+TGG | + | chr8.2:7681312-7681331 | MS.gene051787:CDS | 35.0% | |
| GATGCAATAGCAATAAAGAG+TGG | + | chr8.2:7681285-7681304 | MS.gene051787:CDS | 35.0% | |
| TCTTCATCACAATTCCAACA+CGG | - | chr8.2:7681709-7681728 | None:intergenic | 35.0% | |
| TTTCAGTGTGCATTTGTACA+TGG | + | chr8.2:7681923-7681942 | MS.gene051787:CDS | 35.0% | |
| ATAAGCTTCACCAGTGTCTA+TGG | + | chr8.2:7681791-7681810 | MS.gene051787:CDS | 40.0% | |
| ATCTTCTTGTGTGGGATTCT+AGG | + | chr8.2:7681600-7681619 | MS.gene051787:CDS | 40.0% | |
| GGAAAATGGTCCCTATTACA+CGG | - | chr8.2:7681949-7681968 | None:intergenic | 40.0% | |
| TACAATGAACACCCTGATGA+TGG | + | chr8.2:7681734-7681753 | MS.gene051787:CDS | 40.0% | |
| TAGGGTCATATCCATCATCA+GGG | - | chr8.2:7681748-7681767 | None:intergenic | 40.0% | |
| TTGTACATGGCCGTGTAATA+GGG | + | chr8.2:7681936-7681955 | MS.gene051787:CDS | 40.0% | |
| TTTGTACATGGCCGTGTAAT+AGG | + | chr8.2:7681935-7681954 | MS.gene051787:CDS | 40.0% | |
| ! | ACTTTTCGTGACATGTCAGT+TGG | + | chr8.2:7681875-7681894 | MS.gene051787:CDS | 40.0% |
| ! | CTTTTCGTGACATGTCAGTT+GGG | + | chr8.2:7681876-7681895 | MS.gene051787:CDS | 40.0% |
| ! | TTGCGAGGATATGTTGATAG+AGG | + | chr8.2:7681239-7681258 | MS.gene051787:CDS | 40.0% |
| !! | AACAGTGCTGGTATCTCAAT+AGG | + | chr8.2:7681536-7681555 | MS.gene051787:intron | 40.0% |
| !! | ATCTGTTACATTCTGGGACA+TGG | - | chr8.2:7682029-7682048 | None:intergenic | 40.0% |
| !! | TGATGATGGATATGACCCTA+CGG | + | chr8.2:7681748-7681767 | MS.gene051787:CDS | 40.0% |
| !! | TTATAACTGGAAGTGCCGTA+GGG | - | chr8.2:7681766-7681785 | None:intergenic | 40.0% |
| AAACCTCGTTGTTCGCTCTA+TGG | + | chr8.2:7681362-7681381 | MS.gene051787:CDS | 45.0% | |
| AAGAGTGGTTGGGATCAGTA+TGG | + | chr8.2:7681300-7681319 | MS.gene051787:CDS | 45.0% | |
| AAGATTCTCCACCGTGACAT+TGG | - | chr8.2:7681585-7681604 | None:intergenic | 45.0% | |
| ACGTTTGAGAATGTCCGTGT+TGG | + | chr8.2:7681692-7681711 | MS.gene051787:CDS | 45.0% | |
| AGAGGACTGTTACATAAGCG+TGG | + | chr8.2:7681257-7681276 | MS.gene051787:CDS | 45.0% | |
| CTTGATCGGTACAATGAGCA+AGG | + | chr8.2:7681986-7682005 | MS.gene051787:CDS | 45.0% | |
| GAGGACTGTTACATAAGCGT+GGG | + | chr8.2:7681258-7681277 | MS.gene051787:CDS | 45.0% | |
| GGTGGAGAATCTTCTTGTGT+GGG | + | chr8.2:7681592-7681611 | MS.gene051787:CDS | 45.0% | |
| GTACAATGAGCAAGGACAAC+TGG | + | chr8.2:7681994-7682013 | MS.gene051787:CDS | 45.0% | |
| GTAGGGTCATATCCATCATC+AGG | - | chr8.2:7681749-7681768 | None:intergenic | 45.0% | |
| TAGAGCGAACAACGAGGTTT+CGG | - | chr8.2:7681362-7681381 | None:intergenic | 45.0% | |
| TCAATAGGCAGTGAGATGTC+TGG | + | chr8.2:7681551-7681570 | MS.gene051787:CDS | 45.0% | |
| TCACTACCGTGAATACGTAC+CGG | - | chr8.2:7681833-7681852 | None:intergenic | 45.0% | |
| TGGTGGGATATCCAATGTCA+CGG | + | chr8.2:7681571-7681590 | MS.gene051787:CDS | 45.0% | |
| TTCTTGTGTGGGATTCTAGG+CGG | + | chr8.2:7681603-7681622 | MS.gene051787:CDS | 45.0% | |
| ! | CTTGCTCATTGTACCGATCA+AGG | - | chr8.2:7681988-7682007 | None:intergenic | 45.0% |
| !! | CTTATAACTGGAAGTGCCGT+AGG | - | chr8.2:7681767-7681786 | None:intergenic | 45.0% |
| AACTCCATGGCCATAGACAC+TGG | - | chr8.2:7681804-7681823 | None:intergenic | 50.0% | |
| ATAAAGACTGCACCTGGACG+AGG | + | chr8.2:7681635-7681654 | MS.gene051787:CDS | 50.0% | |
| ATAGGCAGTGAGATGTCTGG+TGG | + | chr8.2:7681554-7681573 | MS.gene051787:CDS | 50.0% | |
| ATGGGCCATGCAGAAAGGTA+CGG | - | chr8.2:7681414-7681433 | None:intergenic | 50.0% | |
| CAAGGTTCTCGCATGGAGAT+GGG | - | chr8.2:7681970-7681989 | None:intergenic | 50.0% | |
| CGGTGGAGAATCTTCTTGTG+TGG | + | chr8.2:7681591-7681610 | MS.gene051787:CDS | 50.0% | |
| CTAACCCGTACCTTTCTGCA+TGG | + | chr8.2:7681406-7681425 | MS.gene051787:intron | 50.0% | |
| CTCCATGCGAGAACCTTGAT+CGG | + | chr8.2:7681972-7681991 | MS.gene051787:CDS | 50.0% | |
| CTCGCATGGAGATGGGAAAA+TGG | - | chr8.2:7681963-7681982 | None:intergenic | 50.0% | |
| GTGAGGATAAAGACTGCACC+TGG | + | chr8.2:7681629-7681648 | MS.gene051787:CDS | 50.0% | |
| TACCGATCAAGGTTCTCGCA+TGG | - | chr8.2:7681977-7681996 | None:intergenic | 50.0% | |
| TAGGCAGTGAGATGTCTGGT+GGG | + | chr8.2:7681555-7681574 | MS.gene051787:CDS | 50.0% | |
| TCAAGGTTCTCGCATGGAGA+TGG | - | chr8.2:7681971-7681990 | None:intergenic | 50.0% | |
| TCGTTGTTCGCTCTATGGTC+AGG | + | chr8.2:7681367-7681386 | MS.gene051787:CDS | 50.0% | |
| TCTTGTGTGGGATTCTAGGC+GGG | + | chr8.2:7681604-7681623 | MS.gene051787:CDS | 50.0% | |
| TGACCATAGAGCGAACAACG+AGG | - | chr8.2:7681368-7681387 | None:intergenic | 50.0% | |
| TGGGATATCCAATGTCACGG+TGG | + | chr8.2:7681574-7681593 | MS.gene051787:CDS | 50.0% | |
| TTCACCAGTGTCTATGGCCA+TGG | + | chr8.2:7681797-7681816 | MS.gene051787:CDS | 50.0% | |
| !! | AGGTACGGGTTAGTTGAGCT+AGG | - | chr8.2:7681399-7681418 | None:intergenic | 50.0% |
| !! | GGTACGGGTTAGTTGAGCTA+GGG | - | chr8.2:7681398-7681417 | None:intergenic | 50.0% |
| AAGGCATGGGCCATGCAGAA+AGG | - | chr8.2:7681419-7681438 | None:intergenic | 55.0% | |
| CTTGTGTGGGATTCTAGGCG+GGG | + | chr8.2:7681605-7681624 | MS.gene051787:CDS | 55.0% | |
| ! | CGTGTGCCGGTACGTATTCA+CGG | + | chr8.2:7681824-7681843 | MS.gene051787:CDS | 55.0% |
| ! | TCTGCATGGCCCATGCCTTT+TGG | + | chr8.2:7681420-7681439 | MS.gene051787:intron | 55.0% |
| ! | TGGGCCATGCAGAAAGGTAC+GGG | - | chr8.2:7681413-7681432 | None:intergenic | 55.0% |
| AAGACTGCACCTGGACGAGG+CGG | + | chr8.2:7681638-7681657 | MS.gene051787:CDS | 60.0% | |
| CTGGACGAGGCGGATATGTG+CGG | + | chr8.2:7681648-7681667 | MS.gene051787:CDS | 60.0% | |
| GGCTTGCACAGACTCTTGCG+AGG | + | chr8.2:7681224-7681243 | MS.gene051787:CDS | 60.0% | |
| TGGCCATGGAGTTCGTGTGC+CGG | + | chr8.2:7681811-7681830 | MS.gene051787:CDS | 60.0% | |
| ! | GTACCGGCACACGAACTCCA+TGG | - | chr8.2:7681817-7681836 | None:intergenic | 60.0% |
| CGCACATATCCGCCTCGTCC+AGG | - | chr8.2:7681650-7681669 | None:intergenic | 65.0% | |
| GGGATTCTAGGCGGGGTGTG+AGG | + | chr8.2:7681612-7681631 | MS.gene051787:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 7681222 | 7682066 | 7681222 | ID=MS.gene051787 |
| chr8.2 | mRNA | 7681222 | 7682066 | 7681222 | ID=MS.gene051787.t1;Parent=MS.gene051787 |
| chr8.2 | exon | 7681222 | 7681388 | 7681222 | ID=MS.gene051787.t1.exon1;Parent=MS.gene051787.t1 |
| chr8.2 | CDS | 7681222 | 7681388 | 7681222 | ID=cds.MS.gene051787.t1;Parent=MS.gene051787.t1 |
| chr8.2 | exon | 7681541 | 7682066 | 7681541 | ID=MS.gene051787.t1.exon2;Parent=MS.gene051787.t1 |
| chr8.2 | CDS | 7681541 | 7682066 | 7681541 | ID=cds.MS.gene051787.t1;Parent=MS.gene051787.t1 |
| Gene Sequence |
| Protein sequence |
