Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48281.t1 | XP_003608889.1 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.70E-190 | 675.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48281.t1 | Q93Y35 | 76.0 | 387 | 93 | 0 | 1 | 387 | 1 | 387 | 1.2e-160 | 567.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48281.t1 | G7JMM6 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.3e-190 | 675.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05190 | MS.gene48281 | 0.822571 | 2.21E-53 | -1.69E-46 |
| MS.gene057144 | MS.gene48281 | 0.967686 | 1.28E-127 | -1.69E-46 |
| MS.gene057145 | MS.gene48281 | 0.961939 | 2.75E-120 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48281.t1 | MTR_4g104080 | 99.483 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 0.0 | 783 |
| MS.gene48281.t1 | MTR_8g046560 | 84.342 | 281 | 25 | 4 | 86 | 366 | 260 | 521 | 2.15e-156 | 451 |
| MS.gene48281.t1 | MTR_8g464820 | 95.673 | 208 | 8 | 1 | 96 | 303 | 160 | 366 | 2.77e-141 | 406 |
| MS.gene48281.t1 | MTR_7g076160 | 24.291 | 247 | 180 | 3 | 127 | 371 | 173 | 414 | 5.65e-19 | 88.6 |
| MS.gene48281.t1 | MTR_8g432630 | 23.481 | 362 | 254 | 11 | 23 | 371 | 65 | 416 | 1.54e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48281.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
| MS.gene48281.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
| MS.gene48281.t1 | AT3G61140 | 25.100 | 251 | 180 | 4 | 124 | 372 | 169 | 413 | 5.59e-18 | 85.5 |
Find 76 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAGTCTCCTTGCTTAA+TGG | 0.172394 | 8.3:+18209891 | None:intergenic |
| TTTAGCTTTGTCAATGCTTT+TGG | 0.209748 | 8.3:+18210975 | None:intergenic |
| CGATCACACGAGACAGTTTC+TGG | 0.218957 | 8.3:+18209857 | None:intergenic |
| ACATTGCAGCTTGGTTTCTT+TGG | 0.250558 | 8.3:-18211018 | MS.gene48281:CDS |
| CCTAGTTGCTGATTCCGTTT+TGG | 0.319218 | 8.3:-18213066 | MS.gene48281:CDS |
| GTAAAATATAAAGGTGTCAT+AGG | 0.319394 | 8.3:+18210711 | None:intergenic |
| GAAGGCGGCCACATTGTTCT+TGG | 0.328664 | 8.3:-18210770 | MS.gene48281:CDS |
| GGATATGGATCGTGTCCTTT+TGG | 0.338072 | 8.3:-18213045 | MS.gene48281:CDS |
| GCAACTAGGGTTTCGTATAA+AGG | 0.352561 | 8.3:+18213080 | None:intergenic |
| AAAGCATTGACAAAGCTAAA+AGG | 0.352604 | 8.3:-18210972 | MS.gene48281:intron |
| AAGTCTTTCTTCTCAGCATT+TGG | 0.381841 | 8.3:-18210441 | MS.gene48281:intron |
| CTTGAACATCTTGTTGTTTG+AGG | 0.383548 | 8.3:+18213243 | None:intergenic |
| CTGCCCAACTGCAACAGTCT+TGG | 0.384938 | 8.3:+18211062 | None:intergenic |
| CAAAACGGTGTAAAATATAA+AGG | 0.388515 | 8.3:+18210702 | None:intergenic |
| AAGGAGACTTCTTGTTGAAC+AGG | 0.394711 | 8.3:-18209882 | MS.gene48281:CDS |
| TGTAAGATTGATAAAGTTGC+AGG | 0.397494 | 8.3:-18209964 | MS.gene48281:CDS |
| TAAAGAGCATTCTTAGCATC+AGG | 0.401822 | 8.3:+18209922 | None:intergenic |
| GAAGCCATGGCAAAAGCGTT+TGG | 0.405490 | 8.3:-18210148 | MS.gene48281:CDS |
| TCAATCACTGTCAAGATCTC+AGG | 0.407014 | 8.3:+18210516 | None:intergenic |
| GTCTCGTGTGATCGATCTTT+AGG | 0.409640 | 8.3:-18209848 | None:intergenic |
| CTTGTATTGACAACCATATA+AGG | 0.412125 | 8.3:+18210461 | None:intergenic |
| GCTATTTGCATCCACACTTC+CGG | 0.415118 | 8.3:-18210240 | MS.gene48281:CDS |
| CTCCTTGCTTAATGGTTGCT+TGG | 0.422700 | 8.3:+18209899 | None:intergenic |
| CAGAGTTTCCTTAAAACAAA+AGG | 0.442207 | 8.3:-18210659 | MS.gene48281:intron |
| CCAACTTAATTTGCTCCGTC+AGG | 0.445020 | 8.3:+18210266 | None:intergenic |
| CCAAAACGGAATCAGCAACT+AGG | 0.455755 | 8.3:+18213066 | None:intergenic |
| GCAGCTTGGTTTCTTTGGCA+TGG | 0.461721 | 8.3:-18211013 | MS.gene48281:CDS |
| TGTTTGAAGAAGGTGGTGAC+TGG | 0.465631 | 8.3:-18210855 | MS.gene48281:CDS |
| TGTTATTATGCTGGTCAAAA+CGG | 0.481534 | 8.3:+18210687 | None:intergenic |
| AAGAAGGTGGTGACTGGGAA+AGG | 0.487909 | 8.3:-18210849 | MS.gene48281:CDS |
| TACATACCTTGTCCCCAATC+CGG | 0.495723 | 8.3:+18211197 | None:intergenic |
| TGAAGTTCGTGAGGCTCACT+TGG | 0.496675 | 8.3:-18211239 | MS.gene48281:CDS |
| TTTGAGGAGGAAAAGCTTGT+CGG | 0.496982 | 8.3:+18213259 | None:intergenic |
| TTTCATCCGGATTGGGGACA+AGG | 0.498726 | 8.3:-18211203 | MS.gene48281:intron |
| TATGACAGCTTGTTTGAAGA+AGG | 0.509351 | 8.3:-18210865 | MS.gene48281:intron |
| GTATTCTATACATTGCAGCT+TGG | 0.510078 | 8.3:-18211027 | MS.gene48281:CDS |
| TGTTGCAGTTGGGCAGAAGA+TGG | 0.511519 | 8.3:-18211055 | MS.gene48281:CDS |
| TTTGACCAGCATAATAACAT+TGG | 0.511922 | 8.3:-18210683 | MS.gene48281:CDS |
| TTCAATTTCGTCAAGGAACA+TGG | 0.512182 | 8.3:-18213188 | MS.gene48281:intron |
| TGATCTCTCTCATGTAATAC+CGG | 0.514625 | 8.3:+18210221 | None:intergenic |
| TCTGTCCAATGTTATTATGC+TGG | 0.519046 | 8.3:+18210678 | None:intergenic |
| GTGACTGGGAAAGGAAGAAT+AGG | 0.520244 | 8.3:-18210840 | MS.gene48281:CDS |
| TGTTATCTTGAGATGCTCCA+AGG | 0.535770 | 8.3:+18211089 | None:intergenic |
| AAACCAAGACTGTTGCAGTT+GGG | 0.539841 | 8.3:-18211065 | MS.gene48281:CDS |
| GCTGATGCCGAGGAAAACTT+AGG | 0.544982 | 8.3:-18211268 | MS.gene48281:CDS |
| TAAAATATAAAGGTGTCATA+GGG | 0.545376 | 8.3:+18210712 | None:intergenic |
| GACACGATCCATATCCAAAA+CGG | 0.546950 | 8.3:+18213052 | None:intergenic |
| GAAACCAAGACTGTTGCAGT+TGG | 0.547733 | 8.3:-18211066 | MS.gene48281:CDS |
| CCTGACGGAGCAAATTAAGT+TGG | 0.551415 | 8.3:-18210266 | MS.gene48281:CDS |
| TAGCACGCATGGAGTCCAAA+AGG | 0.551715 | 8.3:+18213030 | None:intergenic |
| ATAGGTAGTAAAGGTTGAGA+TGG | 0.554018 | 8.3:+18210744 | None:intergenic |
| TATGCACCAGGAGAAAGCCT+TGG | 0.557453 | 8.3:-18211106 | MS.gene48281:intron |
| CAAAACGGAATCAGCAACTA+GGG | 0.569243 | 8.3:+18213067 | None:intergenic |
| GAGTGTGACAATTGAAGCCA+TGG | 0.570854 | 8.3:-18210161 | MS.gene48281:CDS |
| ATCGCGTCAATGGCAAATGA+AGG | 0.573429 | 8.3:-18213314 | None:intergenic |
| CTCATGTAATACCGGAAGTG+TGG | 0.574056 | 8.3:+18210229 | None:intergenic |
| ATTCATTTCAGCTGGCCTGA+CGG | 0.578789 | 8.3:-18210281 | MS.gene48281:intron |
| AATAGGCTGAAAGTGTATGA+AGG | 0.580095 | 8.3:-18210823 | MS.gene48281:CDS |
| GAACATCTTGTTGTTTGAGG+AGG | 0.589500 | 8.3:+18213246 | None:intergenic |
| TACCAAGCAACCATTAAGCA+AGG | 0.592283 | 8.3:-18209901 | MS.gene48281:CDS |
| GTTTGAAGAAGGTGGTGACT+GGG | 0.592873 | 8.3:-18210854 | MS.gene48281:CDS |
| TTCGAGTGGACATGCAGTAG+AGG | 0.594533 | 8.3:+18210800 | None:intergenic |
| GCTGCAATGTATAGAATACC+AGG | 0.602890 | 8.3:+18211031 | None:intergenic |
| GGAGGAAAAGCTTGTCGGCG+AGG | 0.605693 | 8.3:+18213264 | None:intergenic |
| CACTCGAAATTTCGAGAAGG+CGG | 0.611108 | 8.3:-18210785 | MS.gene48281:CDS |
| CGCCTTCTCGAAATTTCGAG+TGG | 0.620270 | 8.3:+18210786 | None:intergenic |
| TTGTCGGCGAGGACAAGTTG+TGG | 0.627071 | 8.3:+18213275 | None:intergenic |
| AAAGAGCATTCTTAGCATCA+GGG | 0.643450 | 8.3:+18209923 | None:intergenic |
| AAAAGCGTTTGGAGTATCTG+TGG | 0.655763 | 8.3:-18210137 | MS.gene48281:CDS |
| GGAAGTGTGGATGCAAATAG+CGG | 0.661860 | 8.3:+18210242 | None:intergenic |
| AGGTGAGAGTGAAGTTCGTG+AGG | 0.662611 | 8.3:-18211248 | MS.gene48281:CDS |
| GTCCACTCGAAATTTCGAGA+AGG | 0.663292 | 8.3:-18210788 | MS.gene48281:CDS |
| AGTTGGGCAGAAGATGGACC+TGG | 0.674047 | 8.3:-18211049 | MS.gene48281:CDS |
| GACAGCTTGTTTGAAGAAGG+TGG | 0.675197 | 8.3:-18210862 | MS.gene48281:intron |
| GAGCATTCTTAGCATCAGGG+CGG | 0.753729 | 8.3:+18209926 | None:intergenic |
| GATGGAATCCAAGAACAATG+TGG | 0.760047 | 8.3:+18210762 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGAAAATTTATTTAATA+GGG | - | chr8.3:18210257-18210276 | MS.gene48281:CDS | 10.0% |
| !! | TTGAAGAAAATTTATTTAAT+AGG | - | chr8.3:18210256-18210275 | MS.gene48281:CDS | 10.0% |
| !! | TCAATAAATACATATCTTAA+TGG | - | chr8.3:18211202-18211221 | MS.gene48281:intron | 15.0% |
| !! | TGAAAAACAAAAGAAAATTA+GGG | + | chr8.3:18210043-18210062 | None:intergenic | 15.0% |
| !! | TTATATAGTGAAGAAAATTA+GGG | + | chr8.3:18210019-18210038 | None:intergenic | 15.0% |
| !! | TTTATATAGTGAAGAAAATT+AGG | + | chr8.3:18210020-18210039 | None:intergenic | 15.0% |
| !!! | TATAATTTTCTGTTAAGAAT+GGG | - | chr8.3:18212246-18212265 | MS.gene48281:intron | 15.0% |
| !! | AAAATCCAAAATTCACAATT+GGG | + | chr8.3:18210219-18210238 | None:intergenic | 20.0% |
| !! | ATATATCCTAGAAAGATTAA+TGG | + | chr8.3:18211617-18211636 | None:intergenic | 20.0% |
| !! | ATTACATATATTTGTTTCCA+GGG | - | chr8.3:18213132-18213151 | MS.gene48281:intron | 20.0% |
| !! | CAATATGTAAAAATAAACTC+TGG | + | chr8.3:18210833-18210852 | None:intergenic | 20.0% |
| !! | GTGAAAAACAAAAGAAAATT+AGG | + | chr8.3:18210044-18210063 | None:intergenic | 20.0% |
| !! | TATATCCTAGAAAGATTAAT+GGG | + | chr8.3:18211616-18211635 | None:intergenic | 20.0% |
| !! | TTAACAGAAAATTATAGCAA+AGG | + | chr8.3:18212242-18212261 | None:intergenic | 20.0% |
| !! | TTGAATTGTACTAATGTATT+TGG | - | chr8.3:18210329-18210348 | MS.gene48281:intron | 20.0% |
| !!! | ACAACTTATTCATCATTTTT+AGG | + | chr8.3:18211083-18211102 | None:intergenic | 20.0% |
| !!! | CTATAATTTTCTGTTAAGAA+TGG | - | chr8.3:18212245-18212264 | MS.gene48281:intron | 20.0% |
| !!! | TAAAATATAAAGGTGTCATA+GGG | + | chr8.3:18212445-18212464 | None:intergenic | 20.0% |
| ! | AAAAAGTTCATAGGTAGTAA+AGG | + | chr8.3:18212422-18212441 | None:intergenic | 25.0% |
| ! | AAATCCAAAATTCACAATTG+GGG | + | chr8.3:18210218-18210237 | None:intergenic | 25.0% |
| ! | AATTACCCATTAATCTTTCT+AGG | - | chr8.3:18211608-18211627 | MS.gene48281:intron | 25.0% |
| ! | AGAAAAGATAAATGGTGTAA+AGG | + | chr8.3:18212546-18212565 | None:intergenic | 25.0% |
| ! | CAAAACGGTGTAAAATATAA+AGG | + | chr8.3:18212455-18212474 | None:intergenic | 25.0% |
| ! | CAAAATCCAAAATTCACAAT+TGG | + | chr8.3:18210220-18210239 | None:intergenic | 25.0% |
| ! | CATTACATATATTTGTTTCC+AGG | - | chr8.3:18213131-18213150 | MS.gene48281:intron | 25.0% |
| ! | CGGTTAAAAGAAAAGATAAA+TGG | + | chr8.3:18212554-18212573 | None:intergenic | 25.0% |
| ! | TAAAACAACCAAGAAAGAAA+AGG | - | chr8.3:18211178-18211197 | MS.gene48281:intron | 25.0% |
| ! | TGATTAGATTACAATGTTGT+GGG | - | chr8.3:18213100-18213119 | MS.gene48281:intron | 25.0% |
| ! | TTGATTAGATTACAATGTTG+TGG | - | chr8.3:18213099-18213118 | MS.gene48281:intron | 25.0% |
| !! | AAATAATAGTTTGTATCTCG+AGG | + | chr8.3:18211801-18211820 | None:intergenic | 25.0% |
| !! | AATTCTAGAGATTCTTGAAT+AGG | + | chr8.3:18210596-18210615 | None:intergenic | 25.0% |
| !! | ATTCTAGAGATTCTTGAATA+GGG | + | chr8.3:18210595-18210614 | None:intergenic | 25.0% |
| !! | TCATATGAATGTCTCATTTT+AGG | - | chr8.3:18211860-18211879 | MS.gene48281:intron | 25.0% |
| !! | TCTGTTCTTAAATGTTTTAC+TGG | - | chr8.3:18210362-18210381 | MS.gene48281:intron | 25.0% |
| !! | TTATTGATCCTTTTCTTTCT+TGG | + | chr8.3:18211189-18211208 | None:intergenic | 25.0% |
| !!! | ATTTTGAAATTCATTTCAGC+TGG | - | chr8.3:18212865-18212884 | MS.gene48281:intron | 25.0% |
| !!! | CAAAATCCTTATTTTTCATC+CGG | - | chr8.3:18211938-18211957 | MS.gene48281:intron | 25.0% |
| !!! | GTAAAATATAAAGGTGTCAT+AGG | + | chr8.3:18212446-18212465 | None:intergenic | 25.0% |
| !!! | TAGAAGTACCTTTTGTTTTA+AGG | + | chr8.3:18212506-18212525 | None:intergenic | 25.0% |
| !!! | TATTTTTACATATTGTGACC+TGG | - | chr8.3:18210838-18210857 | MS.gene48281:CDS | 25.0% |
| AAACGAAAAACCAAGTGATT+TGG | + | chr8.3:18213071-18213090 | None:intergenic | 30.0% | |
| AAATCGACATATGATCTGAA+TGG | + | chr8.3:18210684-18210703 | None:intergenic | 30.0% | |
| AACGAAAAACCAAGTGATTT+GGG | + | chr8.3:18213070-18213089 | None:intergenic | 30.0% | |
| AAGTACAAAACCTAGAATAC+TGG | - | chr8.3:18211709-18211728 | MS.gene48281:intron | 30.0% | |
| AGTACAAAACCTAGAATACT+GGG | - | chr8.3:18211710-18211729 | MS.gene48281:intron | 30.0% | |
| AGTATAATGAGTCTTTGTTG+GGG | - | chr8.3:18210726-18210745 | MS.gene48281:CDS | 30.0% | |
| CAGAGTTTCCTTAAAACAAA+AGG | - | chr8.3:18212495-18212514 | MS.gene48281:intron | 30.0% | |
| CTTGTAAGATTCCAAAAACT+GGG | + | chr8.3:18212974-18212993 | None:intergenic | 30.0% | |
| GAACATAGAAGCAAAAAGAT+AGG | + | chr8.3:18212832-18212851 | None:intergenic | 30.0% | |
| GAGTATAATGAGTCTTTGTT+GGG | - | chr8.3:18210725-18210744 | MS.gene48281:CDS | 30.0% | |
| GTGAAGAAAATTAGGGTTTA+CGG | + | chr8.3:18210012-18210031 | None:intergenic | 30.0% | |
| TCTTGTAAGATTCCAAAAAC+TGG | + | chr8.3:18212975-18212994 | None:intergenic | 30.0% | |
| TGAGTATAATGAGTCTTTGT+TGG | - | chr8.3:18210724-18210743 | MS.gene48281:CDS | 30.0% | |
| TGTAAGATTGATAAAGTTGC+AGG | - | chr8.3:18213190-18213209 | MS.gene48281:CDS | 30.0% | |
| TGTTATTATGCTGGTCAAAA+CGG | + | chr8.3:18212470-18212489 | None:intergenic | 30.0% | |
| TTTACATGATGCTACATCAT+TGG | + | chr8.3:18211230-18211249 | None:intergenic | 30.0% | |
| TTTGACCAGCATAATAACAT+TGG | - | chr8.3:18212471-18212490 | MS.gene48281:intron | 30.0% | |
| ! | ACTGTTTCTTTCCTTGATTA+TGG | + | chr8.3:18211028-18211047 | None:intergenic | 30.0% |
| ! | AGATGTTTTCAATTTCGTCA+AGG | - | chr8.3:18209959-18209978 | MS.gene48281:CDS | 30.0% |
| ! | ATCAAGGAAAGAAACAGTTT+TGG | - | chr8.3:18211030-18211049 | MS.gene48281:CDS | 30.0% |
| ! | CAAAACTTTCATTTTCACTC+TGG | - | chr8.3:18211366-18211385 | MS.gene48281:intron | 30.0% |
| ! | CAGAGTGAAAATGAAAGTTT+TGG | + | chr8.3:18211368-18211387 | None:intergenic | 30.0% |
| ! | CTTGTATTGACAACCATATA+AGG | + | chr8.3:18212696-18212715 | None:intergenic | 30.0% |
| ! | TAACTAGACTAATTTGCATC+AGG | - | chr8.3:18212604-18212623 | MS.gene48281:intron | 30.0% |
| ! | TCCACATCTTAAAGAGTTTT+TGG | - | chr8.3:18212667-18212686 | MS.gene48281:intron | 30.0% |
| ! | TTAACCCCAATTGTGAATTT+TGG | - | chr8.3:18210211-18210230 | MS.gene48281:CDS | 30.0% |
| ! | TTTTGGATTTTGAATGCACT+AGG | - | chr8.3:18210228-18210247 | MS.gene48281:CDS | 30.0% |
| !! | AAAGCATTGACAAAGCTAAA+AGG | - | chr8.3:18212182-18212201 | MS.gene48281:intron | 30.0% |
| !! | CTTAGTTCTATATGGATGTA+TGG | + | chr8.3:18211127-18211146 | None:intergenic | 30.0% |
| !! | TAGAATCACTTTTGAAGATG+TGG | + | chr8.3:18211522-18211541 | None:intergenic | 30.0% |
| !! | TCCAAAAACTCTTTAAGATG+TGG | + | chr8.3:18212671-18212690 | None:intergenic | 30.0% |
| !! | TGTCATTTATTCCCAGTTTT+TGG | - | chr8.3:18212960-18212979 | MS.gene48281:intron | 30.0% |
| !!! | TCTTTTGTTTTTCACAGACA+TGG | - | chr8.3:18210049-18210068 | MS.gene48281:intron | 30.0% |
| !!! | TTTAGCTTTGTCAATGCTTT+TGG | + | chr8.3:18212182-18212201 | None:intergenic | 30.0% |
| AAAAACCCCAGAATAAGCAA+GGG | + | chr8.3:18210867-18210886 | None:intergenic | 35.0% | |
| AAATAGCAAAGCAACGAAGA+GGG | + | chr8.3:18211482-18211501 | None:intergenic | 35.0% | |
| AACTTCAATCAAACTGCTAG+AGG | + | chr8.3:18210629-18210648 | None:intergenic | 35.0% | |
| AAGTCTTTCTTCTCAGCATT+TGG | - | chr8.3:18212713-18212732 | MS.gene48281:intron | 35.0% | |
| ACTTCAATCAAACTGCTAGA+GGG | + | chr8.3:18210628-18210647 | None:intergenic | 35.0% | |
| AGAATAGAAAATGCAAAGGC+TGG | - | chr8.3:18211733-18211752 | MS.gene48281:intron | 35.0% | |
| ATAGGTAGTAAAGGTTGAGA+TGG | + | chr8.3:18212413-18212432 | None:intergenic | 35.0% | |
| CATGGAAATCACCATAATCA+AGG | - | chr8.3:18211014-18211033 | MS.gene48281:CDS | 35.0% | |
| CCATATAGAACTAAGCTAGT+TGG | - | chr8.3:18211132-18211151 | MS.gene48281:intron | 35.0% | |
| CTTGATTATGGTGATTTCCA+TGG | + | chr8.3:18211016-18211035 | None:intergenic | 35.0% | |
| GCAGTTTGATTGAAGTTGAA+CGG | - | chr8.3:18210632-18210651 | MS.gene48281:intron | 35.0% | |
| GCCAAGAAATAACAGAACAA+CGG | + | chr8.3:18212574-18212593 | None:intergenic | 35.0% | |
| GTATAATGAGTCTTTGTTGG+GGG | - | chr8.3:18210727-18210746 | MS.gene48281:CDS | 35.0% | |
| GTATTCTATACATTGCAGCT+TGG | - | chr8.3:18212127-18212146 | MS.gene48281:intron | 35.0% | |
| GTCATAGGGAAAAAGTTCAT+AGG | + | chr8.3:18212431-18212450 | None:intergenic | 35.0% | |
| TATAGAACTAAGCTAGTTGG+AGG | - | chr8.3:18211135-18211154 | MS.gene48281:intron | 35.0% | |
| TATATACCCAATGTCACCAA+TGG | - | chr8.3:18210936-18210955 | MS.gene48281:intron | 35.0% | |
| TATGAGCTATCGTTAGTACA+AGG | + | chr8.3:18211845-18211864 | None:intergenic | 35.0% | |
| TCCAAACATACTTCTTTAGC+AGG | + | chr8.3:18210554-18210573 | None:intergenic | 35.0% | |
| TCTGTCCAATGTTATTATGC+TGG | + | chr8.3:18212479-18212498 | None:intergenic | 35.0% | |
| TCTTCAAACAAGCTGTCATA+TGG | + | chr8.3:18212289-18212308 | None:intergenic | 35.0% | |
| TGATCTCTCTCATGTAATAC+CGG | + | chr8.3:18212936-18212955 | None:intergenic | 35.0% | |
| TGCAATTACTATGACACATC+TGG | + | chr8.3:18211760-18211779 | None:intergenic | 35.0% | |
| TGGGAGAATAGAAAATGCAA+AGG | - | chr8.3:18211729-18211748 | MS.gene48281:intron | 35.0% | |
| TTAATAATAACCGCAGAGAC+AGG | + | chr8.3:18211590-18211609 | None:intergenic | 35.0% | |
| TTAGATTACAATGTTGTGGG+AGG | - | chr8.3:18213103-18213122 | MS.gene48281:intron | 35.0% | |
| TTCAATTTCGTCAAGGAACA+TGG | - | chr8.3:18209966-18209985 | MS.gene48281:CDS | 35.0% | |
| TTCTATTCTCCCAGTATTCT+AGG | + | chr8.3:18211722-18211741 | None:intergenic | 35.0% | |
| ! | AATAGGCTGAAAGTGTATGA+AGG | - | chr8.3:18212331-18212350 | MS.gene48281:intron | 35.0% |
| ! | ATTTTCATCTGTCAGCTCAA+AGG | + | chr8.3:18211332-18211351 | None:intergenic | 35.0% |
| ! | TATGACAGCTTGTTTGAAGA+AGG | - | chr8.3:18212289-18212308 | MS.gene48281:intron | 35.0% |
| ! | TCCTGCTAAAGAAGTATGTT+TGG | - | chr8.3:18210550-18210569 | MS.gene48281:intron | 35.0% |
| !! | AAAGAGCATTCTTAGCATCA+GGG | + | chr8.3:18213234-18213253 | None:intergenic | 35.0% |
| !! | ACCGTTGTTCTGTTATTTCT+TGG | - | chr8.3:18212570-18212589 | MS.gene48281:intron | 35.0% |
| !! | ATCATCAATTTTAGCACGCA+TGG | + | chr8.3:18210138-18210157 | None:intergenic | 35.0% |
| !! | CCAACTAGCTTAGTTCTATA+TGG | + | chr8.3:18211135-18211154 | None:intergenic | 35.0% |
| !! | CTTATTTTTCATCCGGATTG+GGG | - | chr8.3:18211945-18211964 | MS.gene48281:intron | 35.0% |
| !! | CTTGAACATCTTGTTGTTTG+AGG | + | chr8.3:18209914-18209933 | None:intergenic | 35.0% |
| !! | GAGTTTTTGGACTCCTTATA+TGG | - | chr8.3:18212680-18212699 | MS.gene48281:intron | 35.0% |
| !! | TAAAGAGCATTCTTAGCATC+AGG | + | chr8.3:18213235-18213254 | None:intergenic | 35.0% |
| !! | TATCACGTTTTATTGCAGCT+GGG | - | chr8.3:18213158-18213177 | MS.gene48281:intron | 35.0% |
| !!! | CCTTATTTTTCATCCGGATT+GGG | - | chr8.3:18211944-18211963 | MS.gene48281:intron | 35.0% |
| !!! | TCCTTATTTTTCATCCGGAT+TGG | - | chr8.3:18211943-18211962 | MS.gene48281:intron | 35.0% |
| !!! | TGTTTTGAGGCTAGCTATTA+TGG | + | chr8.3:18210973-18210992 | None:intergenic | 35.0% |
| AAACCAAGACTGTTGCAGTT+GGG | - | chr8.3:18212089-18212108 | MS.gene48281:intron | 40.0% | |
| AAGGAGACTTCTTGTTGAAC+AGG | - | chr8.3:18213272-18213291 | MS.gene48281:CDS | 40.0% | |
| AATAAAACGTGATAGCTCCC+TGG | + | chr8.3:18213152-18213171 | None:intergenic | 40.0% | |
| ACATTGCAGCTTGGTTTCTT+TGG | - | chr8.3:18212136-18212155 | MS.gene48281:intron | 40.0% | |
| ATTCTTGAATAGGGAACACG+TGG | + | chr8.3:18210586-18210605 | None:intergenic | 40.0% | |
| CAAAACGGAATCAGCAACTA+GGG | + | chr8.3:18210090-18210109 | None:intergenic | 40.0% | |
| CAAATAGCAAAGCAACGAAG+AGG | + | chr8.3:18211483-18211502 | None:intergenic | 40.0% | |
| CAAGAAGTCTCCTTGCTTAA+TGG | + | chr8.3:18213266-18213285 | None:intergenic | 40.0% | |
| CAATGTCACCAATGGCTTAT+GGG | - | chr8.3:18210944-18210963 | MS.gene48281:intron | 40.0% | |
| CAGGCTAAATTTCATCCATC+AGG | + | chr8.3:18211571-18211590 | None:intergenic | 40.0% | |
| CCATCAGGAATTCTAAGTTC+AGG | + | chr8.3:18211556-18211575 | None:intergenic | 40.0% | |
| CCCAATCCGGATGAAAAATA+AGG | + | chr8.3:18211947-18211966 | None:intergenic | 40.0% | |
| CCTGAACTTAGAATTCCTGA+TGG | - | chr8.3:18211553-18211572 | MS.gene48281:intron | 40.0% | |
| CTTCAATCAAACTGCTAGAG+GGG | + | chr8.3:18210627-18210646 | None:intergenic | 40.0% | |
| GAAAAACCCCAGAATAAGCA+AGG | + | chr8.3:18210868-18210887 | None:intergenic | 40.0% | |
| GACACGATCCATATCCAAAA+CGG | + | chr8.3:18210105-18210124 | None:intergenic | 40.0% | |
| GATGGAATCCAAGAACAATG+TGG | + | chr8.3:18212395-18212414 | None:intergenic | 40.0% | |
| GCAACTAGGGTTTCGTATAA+AGG | + | chr8.3:18210077-18210096 | None:intergenic | 40.0% | |
| GCTGCAATGTATAGAATACC+AGG | + | chr8.3:18212126-18212145 | None:intergenic | 40.0% | |
| TACCAAGCAACCATTAAGCA+AGG | - | chr8.3:18213253-18213272 | MS.gene48281:CDS | 40.0% | |
| TCAATCACTGTCAAGATCTC+AGG | + | chr8.3:18212641-18212660 | None:intergenic | 40.0% | |
| TGAAATTTAGCCTGTCTCTG+CGG | - | chr8.3:18211577-18211596 | MS.gene48281:intron | 40.0% | |
| TGAATGCATCCCAAATCACT+TGG | - | chr8.3:18213058-18213077 | MS.gene48281:CDS | 40.0% | |
| TGTTATCTTGAGATGCTCCA+AGG | + | chr8.3:18212068-18212087 | None:intergenic | 40.0% | |
| TTCAATCAAACTGCTAGAGG+GGG | + | chr8.3:18210626-18210645 | None:intergenic | 40.0% | |
| TTTGAGGAGGAAAAGCTTGT+CGG | + | chr8.3:18209898-18209917 | None:intergenic | 40.0% | |
| ! | ACTCTCACCTAAGTTTTCCT+CGG | + | chr8.3:18211896-18211915 | None:intergenic | 40.0% |
| ! | CAAAGGCTGGTGATTTTTCA+GGG | + | chr8.3:18211315-18211334 | None:intergenic | 40.0% |
| ! | CATAAGCCATTGGTGACATT+GGG | + | chr8.3:18210945-18210964 | None:intergenic | 40.0% |
| ! | GACTAATTTGCATCAGGTAG+TGG | - | chr8.3:18212610-18212629 | MS.gene48281:intron | 40.0% |
| ! | TCAAAGGCTGGTGATTTTTC+AGG | + | chr8.3:18211316-18211335 | None:intergenic | 40.0% |
| ! | TTTGAGGCTAGCTATTATGG+TGG | + | chr8.3:18210970-18210989 | None:intergenic | 40.0% |
| !! | AAAAGCGTTTGGAGTATCTG+TGG | - | chr8.3:18213017-18213036 | MS.gene48281:CDS | 40.0% |
| !! | CTATCACGTTTTATTGCAGC+TGG | - | chr8.3:18213157-18213176 | MS.gene48281:intron | 40.0% |
| !! | CTCTTCGTTGCTTTGCTATT+TGG | - | chr8.3:18211481-18211500 | MS.gene48281:intron | 40.0% |
| !! | GAACATCTTGTTGTTTGAGG+AGG | + | chr8.3:18209911-18209930 | None:intergenic | 40.0% |
| !!! | TGCTGATTCCGTTTTGGATA+TGG | - | chr8.3:18210094-18210113 | MS.gene48281:intron | 40.0% |
| ACTGTAGGACATCTTCAGTC+TGG | + | chr8.3:18211456-18211475 | None:intergenic | 45.0% | |
| ACTTGATTCCAGCAGCAGAA+AGG | + | chr8.3:18212015-18212034 | None:intergenic | 45.0% | |
| CACTCGAAATTTCGAGAAGG+CGG | - | chr8.3:18212369-18212388 | MS.gene48281:intron | 45.0% | |
| CATGGCATCTACCATTCACT+GGG | + | chr8.3:18210998-18211017 | None:intergenic | 45.0% | |
| CCAAAACGGAATCAGCAACT+AGG | + | chr8.3:18210091-18210110 | None:intergenic | 45.0% | |
| CCAATGTCACCAATGGCTTA+TGG | - | chr8.3:18210943-18210962 | MS.gene48281:intron | 45.0% | |
| CCTGACGGAGCAAATTAAGT+TGG | - | chr8.3:18212888-18212907 | MS.gene48281:intron | 45.0% | |
| CTCAAAACATGCCCAGTGAA+TGG | - | chr8.3:18210984-18211003 | MS.gene48281:CDS | 45.0% | |
| CTCATGTAATACCGGAAGTG+TGG | + | chr8.3:18212928-18212947 | None:intergenic | 45.0% | |
| CTCCTTGCTTAATGGTTGCT+TGG | + | chr8.3:18213258-18213277 | None:intergenic | 45.0% | |
| GAAACCAAGACTGTTGCAGT+TGG | - | chr8.3:18212088-18212107 | MS.gene48281:intron | 45.0% | |
| GAGTGTGACAATTGAAGCCA+TGG | - | chr8.3:18212993-18213012 | MS.gene48281:intron | 45.0% | |
| GCTATTTGCATCCACACTTC+CGG | - | chr8.3:18212914-18212933 | MS.gene48281:intron | 45.0% | |
| GTCCACTCGAAATTTCGAGA+AGG | - | chr8.3:18212366-18212385 | MS.gene48281:intron | 45.0% | |
| GTGACTGGGAAAGGAAGAAT+AGG | - | chr8.3:18212314-18212333 | MS.gene48281:intron | 45.0% | |
| GTTTGAAGAAGGTGGTGACT+GGG | - | chr8.3:18212300-18212319 | MS.gene48281:intron | 45.0% | |
| TACATACCTTGTCCCCAATC+CGG | + | chr8.3:18211960-18211979 | None:intergenic | 45.0% | |
| TGGTCACCCTTGCTTATTCT+GGG | - | chr8.3:18210858-18210877 | MS.gene48281:CDS | 45.0% | |
| TGTTTGAAGAAGGTGGTGAC+TGG | - | chr8.3:18212299-18212318 | MS.gene48281:intron | 45.0% | |
| TTCCAGCAGCAGAAAGGAAA+AGG | + | chr8.3:18212009-18212028 | None:intergenic | 45.0% | |
| ! | AGTGAGGTGGACATTGACTA+TGG | + | chr8.3:18211411-18211430 | None:intergenic | 45.0% |
| ! | ATTCATTTCAGCTGGCCTGA+CGG | - | chr8.3:18212873-18212892 | MS.gene48281:intron | 45.0% |
| ! | CATTCACTGGGCATGTTTTG+AGG | + | chr8.3:18210986-18211005 | None:intergenic | 45.0% |
| ! | CATTTTCACTCTGGCAGAGA+AGG | - | chr8.3:18211375-18211394 | MS.gene48281:intron | 45.0% |
| ! | CCATAAGCCATTGGTGACAT+TGG | + | chr8.3:18210946-18210965 | None:intergenic | 45.0% |
| ! | GACAGCTTGTTTGAAGAAGG+TGG | - | chr8.3:18212292-18212311 | MS.gene48281:intron | 45.0% |
| ! | GGAAGTGTGGATGCAAATAG+CGG | + | chr8.3:18212915-18212934 | None:intergenic | 45.0% |
| ! | GGATATGGATCGTGTCCTTT+TGG | - | chr8.3:18210109-18210128 | MS.gene48281:intron | 45.0% |
| ! | TACTCCAAACGCTTTTGCCA+TGG | + | chr8.3:18213013-18213032 | None:intergenic | 45.0% |
| ! | TTCCTTTTCCTTTCTGCTGC+TGG | - | chr8.3:18212004-18212023 | MS.gene48281:intron | 45.0% |
| !! | CCAACTTAATTTGCTCCGTC+AGG | + | chr8.3:18212891-18212910 | None:intergenic | 45.0% |
| !!! | CCTAGTTGCTGATTCCGTTT+TGG | - | chr8.3:18210088-18210107 | MS.gene48281:intron | 45.0% |
| !!! | GGTGATTTTTCAGGGCACAA+CGG | + | chr8.3:18211307-18211326 | None:intergenic | 45.0% |
| !!! | TTTTAGGATTGCTGATGCCG+AGG | - | chr8.3:18211876-18211895 | MS.gene48281:intron | 45.0% |
| AACACTGTCCTCTATGCACC+AGG | - | chr8.3:18212036-18212055 | MS.gene48281:intron | 50.0% | |
| AAGAAGGTGGTGACTGGGAA+AGG | - | chr8.3:18212305-18212324 | MS.gene48281:intron | 50.0% | |
| AATGTCCACCTCACTTGAGG+AGG | - | chr8.3:18211416-18211435 | MS.gene48281:intron | 50.0% | |
| AGGGTTTACGGAGAGAGAAG+AGG | + | chr8.3:18210000-18210019 | None:intergenic | 50.0% | |
| AGGTGAGAGTGAAGTTCGTG+AGG | - | chr8.3:18211906-18211925 | MS.gene48281:intron | 50.0% | |
| CAACGAAGAGGGTTCACTGT+AGG | + | chr8.3:18211471-18211490 | None:intergenic | 50.0% | |
| CAGAATAAGCAAGGGTGACC+AGG | + | chr8.3:18210859-18210878 | None:intergenic | 50.0% | |
| CCAGTGAATGGTAGATGCCA+TGG | - | chr8.3:18210996-18211015 | MS.gene48281:CDS | 50.0% | |
| CCATGGCATCTACCATTCAC+TGG | + | chr8.3:18210999-18211018 | None:intergenic | 50.0% | |
| CGATCACACGAGACAGTTTC+TGG | + | chr8.3:18213300-18213319 | None:intergenic | 50.0% | |
| CGCCTTCTCGAAATTTCGAG+TGG | + | chr8.3:18212371-18212390 | None:intergenic | 50.0% | |
| CTGGTCACCCTTGCTTATTC+TGG | - | chr8.3:18210857-18210876 | MS.gene48281:CDS | 50.0% | |
| GAGCATTCTTAGCATCAGGG+CGG | + | chr8.3:18213231-18213250 | None:intergenic | 50.0% | |
| GCAGCTTGGTTTCTTTGGCA+TGG | - | chr8.3:18212141-18212160 | MS.gene48281:intron | 50.0% | |
| GCTGATGCCGAGGAAAACTT+AGG | - | chr8.3:18211886-18211905 | MS.gene48281:intron | 50.0% | |
| GGGTTTACGGAGAGAGAAGA+GGG | + | chr8.3:18209999-18210018 | None:intergenic | 50.0% | |
| GGTCACCCTTGCTTATTCTG+GGG | - | chr8.3:18210859-18210878 | MS.gene48281:CDS | 50.0% | |
| GTCAATGTCCACCTCACTTG+AGG | - | chr8.3:18211413-18211432 | MS.gene48281:intron | 50.0% | |
| TAGCACGCATGGAGTCCAAA+AGG | + | chr8.3:18210127-18210146 | None:intergenic | 50.0% | |
| TATGCACCAGGAGAAAGCCT+TGG | - | chr8.3:18212048-18212067 | MS.gene48281:intron | 50.0% | |
| TATGGTGGCCCATAAGCCAT+TGG | + | chr8.3:18210955-18210974 | None:intergenic | 50.0% | |
| TCATCTGTCAGCTCAAAGGC+TGG | + | chr8.3:18211328-18211347 | None:intergenic | 50.0% | |
| TGAAGTTCGTGAGGCTCACT+TGG | - | chr8.3:18211915-18211934 | MS.gene48281:intron | 50.0% | |
| TGTTGCAGTTGGGCAGAAGA+TGG | - | chr8.3:18212099-18212118 | MS.gene48281:intron | 50.0% | |
| TTCGAGTGGACATGCAGTAG+AGG | + | chr8.3:18212357-18212376 | None:intergenic | 50.0% | |
| ! | TTTCATCCGGATTGGGGACA+AGG | - | chr8.3:18211951-18211970 | MS.gene48281:intron | 50.0% |
| !! | GAAGCCATGGCAAAAGCGTT+TGG | - | chr8.3:18213006-18213025 | MS.gene48281:CDS | 50.0% |
| AGTTGGGCAGAAGATGGACC+TGG | - | chr8.3:18212105-18212124 | MS.gene48281:intron | 55.0% | |
| CATTGCAGCCTCCTCAAGTG+AGG | + | chr8.3:18211427-18211446 | None:intergenic | 55.0% | |
| CTGCCCAACTGCAACAGTCT+TGG | + | chr8.3:18212095-18212114 | None:intergenic | 55.0% | |
| GAAGGCGGCCACATTGTTCT+TGG | - | chr8.3:18212384-18212403 | MS.gene48281:intron | 55.0% | |
| GATGCTCCAAGGCTTTCTCC+TGG | + | chr8.3:18212057-18212076 | None:intergenic | 55.0% | |
| GGCTTTCTCCTGGTGCATAG+AGG | + | chr8.3:18212047-18212066 | None:intergenic | 55.0% | |
| TTGTCGGCGAGGACAAGTTG+TGG | + | chr8.3:18209882-18209901 | None:intergenic | 55.0% | |
| GGAGGAAAAGCTTGTCGGCG+AGG | + | chr8.3:18209893-18209912 | None:intergenic | 60.0% | |
| TGCAGCCTCCTCAAGTGAGG+TGG | + | chr8.3:18211424-18211443 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 18209849 | 18213327 | 18209849 | ID=MS.gene48281 |
| chr8.3 | mRNA | 18209849 | 18213327 | 18209849 | ID=MS.gene48281.t1;Parent=MS.gene48281 |
| chr8.3 | exon | 18213189 | 18213327 | 18213189 | ID=MS.gene48281.t1.exon1;Parent=MS.gene48281.t1 |
| chr8.3 | CDS | 18213189 | 18213327 | 18213189 | ID=cds.MS.gene48281.t1;Parent=MS.gene48281.t1 |
| chr8.3 | exon | 18212996 | 18213110 | 18212996 | ID=MS.gene48281.t1.exon2;Parent=MS.gene48281.t1 |
| chr8.3 | CDS | 18212996 | 18213110 | 18212996 | ID=cds.MS.gene48281.t1;Parent=MS.gene48281.t1 |
| chr8.3 | exon | 18211204 | 18211294 | 18211204 | ID=MS.gene48281.t1.exon3;Parent=MS.gene48281.t1 |
| chr8.3 | CDS | 18211204 | 18211294 | 18211204 | ID=cds.MS.gene48281.t1;Parent=MS.gene48281.t1 |
| chr8.3 | exon | 18210973 | 18211118 | 18210973 | ID=MS.gene48281.t1.exon4;Parent=MS.gene48281.t1 |
| chr8.3 | CDS | 18210973 | 18211118 | 18210973 | ID=cds.MS.gene48281.t1;Parent=MS.gene48281.t1 |
| chr8.3 | exon | 18210660 | 18210879 | 18210660 | ID=MS.gene48281.t1.exon5;Parent=MS.gene48281.t1 |
| chr8.3 | CDS | 18210660 | 18210879 | 18210660 | ID=cds.MS.gene48281.t1;Parent=MS.gene48281.t1 |
| chr8.3 | exon | 18210442 | 18210550 | 18210442 | ID=MS.gene48281.t1.exon6;Parent=MS.gene48281.t1 |
| chr8.3 | CDS | 18210442 | 18210550 | 18210442 | ID=cds.MS.gene48281.t1;Parent=MS.gene48281.t1 |
| chr8.3 | exon | 18210124 | 18210292 | 18210124 | ID=MS.gene48281.t1.exon7;Parent=MS.gene48281.t1 |
| chr8.3 | CDS | 18210124 | 18210292 | 18210124 | ID=cds.MS.gene48281.t1;Parent=MS.gene48281.t1 |
| chr8.3 | exon | 18209849 | 18210023 | 18209849 | ID=MS.gene48281.t1.exon8;Parent=MS.gene48281.t1 |
| chr8.3 | CDS | 18209849 | 18210023 | 18209849 | ID=cds.MS.gene48281.t1;Parent=MS.gene48281.t1 |
| Gene Sequence |
| Protein sequence |
