Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48400.t1 | XP_003608889.1 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.70E-190 | 675.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48400.t1 | Q93Y35 | 76.0 | 387 | 93 | 0 | 1 | 387 | 1 | 387 | 1.2e-160 | 567.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48400.t1 | G7JMM6 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.3e-190 | 675.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05190 | MS.gene48400 | 0.810785 | 9.70E-51 | -1.69E-46 |
| MS.gene057144 | MS.gene48400 | 0.99513 | 2.71E-213 | -1.69E-46 |
| MS.gene057145 | MS.gene48400 | 0.991913 | 3.05E-190 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48400.t1 | MTR_4g104080 | 99.483 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 0.0 | 783 |
| MS.gene48400.t1 | MTR_8g046560 | 84.342 | 281 | 25 | 4 | 86 | 366 | 260 | 521 | 2.15e-156 | 451 |
| MS.gene48400.t1 | MTR_8g464820 | 95.673 | 208 | 8 | 1 | 96 | 303 | 160 | 366 | 2.77e-141 | 406 |
| MS.gene48400.t1 | MTR_7g076160 | 24.291 | 247 | 180 | 3 | 127 | 371 | 173 | 414 | 5.65e-19 | 88.6 |
| MS.gene48400.t1 | MTR_8g432630 | 23.481 | 362 | 254 | 11 | 23 | 371 | 65 | 416 | 1.54e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48400.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
| MS.gene48400.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
| MS.gene48400.t1 | AT3G61140 | 25.100 | 251 | 180 | 4 | 124 | 372 | 169 | 413 | 5.59e-18 | 85.5 |
Find 76 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAGTCTCCTTGCTTAA+TGG | 0.172394 | 8.1:-20374979 | None:intergenic |
| TTTAGCTTTGTCAATGCTTT+TGG | 0.209748 | 8.1:-20373895 | None:intergenic |
| CGATCACACGAGACAGTTTC+TGG | 0.218957 | 8.1:-20375013 | None:intergenic |
| ACATTGCAGCTTGGTTTCTT+TGG | 0.250558 | 8.1:+20373852 | MS.gene48400:CDS |
| CCTAGTTGCTGATTCCGTTT+TGG | 0.319218 | 8.1:+20371800 | MS.gene48400:CDS |
| GTAAAATATAAAGGTGTCAT+AGG | 0.319394 | 8.1:-20374159 | None:intergenic |
| GAAGGCGGCCACATTGTTCT+TGG | 0.328664 | 8.1:+20374100 | MS.gene48400:CDS |
| GGATATGGATCGTGTCCTTT+TGG | 0.338072 | 8.1:+20371821 | MS.gene48400:CDS |
| GCAACTAGGGTTTCGTATAA+AGG | 0.352561 | 8.1:-20371786 | None:intergenic |
| AAAGCATTGACAAAGCTAAA+AGG | 0.352604 | 8.1:+20373898 | MS.gene48400:CDS |
| AAGTCTTTCTTCTCAGCATT+TGG | 0.381841 | 8.1:+20374429 | MS.gene48400:CDS |
| CTTGAACATCTTGTTGTTTG+AGG | 0.383548 | 8.1:-20371623 | None:intergenic |
| CTGCCCAACTGCAACAGTCT+TGG | 0.384938 | 8.1:-20373808 | None:intergenic |
| CAAAACGGTGTAAAATATAA+AGG | 0.388515 | 8.1:-20374168 | None:intergenic |
| AAGGAGACTTCTTGTTGAAC+AGG | 0.394711 | 8.1:+20374988 | MS.gene48400:CDS |
| TGTAAGATTGATAAAGTTGC+AGG | 0.397494 | 8.1:+20374906 | MS.gene48400:CDS |
| TAAAGAGCATTCTTAGCATC+AGG | 0.401822 | 8.1:-20374948 | None:intergenic |
| GAAGCCATGGCAAAAGCGTT+TGG | 0.405490 | 8.1:+20374722 | MS.gene48400:CDS |
| TCAATCACTGTCAAGATCTC+AGG | 0.407014 | 8.1:-20374354 | None:intergenic |
| GTCTCGTGTGATCGATCTTT+AGG | 0.409640 | 8.1:+20375022 | MS.gene48400:CDS |
| CTTGTATTGACAACCATATA+AGG | 0.412125 | 8.1:-20374409 | None:intergenic |
| GCTATTTGCATCCACACTTC+CGG | 0.415118 | 8.1:+20374630 | MS.gene48400:CDS |
| CTCCTTGCTTAATGGTTGCT+TGG | 0.422700 | 8.1:-20374971 | None:intergenic |
| CAGAGTTTCCTTAAAACAAA+AGG | 0.442207 | 8.1:+20374211 | MS.gene48400:CDS |
| CCAACTTAATTTGCTCCGTC+AGG | 0.445020 | 8.1:-20374604 | None:intergenic |
| CCAAAACGGAATCAGCAACT+AGG | 0.455755 | 8.1:-20371800 | None:intergenic |
| GCAGCTTGGTTTCTTTGGCA+TGG | 0.461721 | 8.1:+20373857 | MS.gene48400:CDS |
| TGTTTGAAGAAGGTGGTGAC+TGG | 0.465631 | 8.1:+20374015 | MS.gene48400:CDS |
| TGTTATTATGCTGGTCAAAA+CGG | 0.481534 | 8.1:-20374183 | None:intergenic |
| AAGAAGGTGGTGACTGGGAA+AGG | 0.487909 | 8.1:+20374021 | MS.gene48400:CDS |
| TACATACCTTGTCCCCAATC+CGG | 0.495723 | 8.1:-20373673 | None:intergenic |
| TGAAGTTCGTGAGGCTCACT+TGG | 0.496675 | 8.1:+20373631 | MS.gene48400:CDS |
| TTTGAGGAGGAAAAGCTTGT+CGG | 0.496982 | 8.1:-20371607 | None:intergenic |
| TTTCATCCGGATTGGGGACA+AGG | 0.498726 | 8.1:+20373667 | MS.gene48400:CDS |
| TATGACAGCTTGTTTGAAGA+AGG | 0.509351 | 8.1:+20374005 | MS.gene48400:intron |
| GTATTCTATACATTGCAGCT+TGG | 0.510078 | 8.1:+20373843 | MS.gene48400:CDS |
| TGTTGCAGTTGGGCAGAAGA+TGG | 0.511519 | 8.1:+20373815 | MS.gene48400:CDS |
| TTTGACCAGCATAATAACAT+TGG | 0.511922 | 8.1:+20374187 | MS.gene48400:CDS |
| TTCAATTTCGTCAAGGAACA+TGG | 0.512182 | 8.1:+20371678 | MS.gene48400:CDS |
| TGATCTCTCTCATGTAATAC+CGG | 0.514625 | 8.1:-20374649 | None:intergenic |
| TCTGTCCAATGTTATTATGC+TGG | 0.519046 | 8.1:-20374192 | None:intergenic |
| GTGACTGGGAAAGGAAGAAT+AGG | 0.520244 | 8.1:+20374030 | MS.gene48400:CDS |
| TGTTATCTTGAGATGCTCCA+AGG | 0.535770 | 8.1:-20373781 | None:intergenic |
| AAACCAAGACTGTTGCAGTT+GGG | 0.539841 | 8.1:+20373805 | MS.gene48400:CDS |
| GCTGATGCCGAGGAAAACTT+AGG | 0.544982 | 8.1:+20373602 | MS.gene48400:CDS |
| TAAAATATAAAGGTGTCATA+GGG | 0.545376 | 8.1:-20374158 | None:intergenic |
| GACACGATCCATATCCAAAA+CGG | 0.546950 | 8.1:-20371814 | None:intergenic |
| GAAACCAAGACTGTTGCAGT+TGG | 0.547733 | 8.1:+20373804 | MS.gene48400:CDS |
| CCTGACGGAGCAAATTAAGT+TGG | 0.551415 | 8.1:+20374604 | MS.gene48400:CDS |
| TAGCACGCATGGAGTCCAAA+AGG | 0.551715 | 8.1:-20371836 | None:intergenic |
| ATAGGTAGTAAAGGTTGAGA+TGG | 0.554018 | 8.1:-20374126 | None:intergenic |
| TATGCACCAGGAGAAAGCCT+TGG | 0.557453 | 8.1:+20373764 | MS.gene48400:intron |
| CAAAACGGAATCAGCAACTA+GGG | 0.569243 | 8.1:-20371799 | None:intergenic |
| GAGTGTGACAATTGAAGCCA+TGG | 0.570854 | 8.1:+20374709 | MS.gene48400:CDS |
| ATCGCGTCAATGGCAAATGA+AGG | 0.573429 | 8.1:+20371552 | None:intergenic |
| CTCATGTAATACCGGAAGTG+TGG | 0.574056 | 8.1:-20374641 | None:intergenic |
| ATTCATTTCAGCTGGCCTGA+CGG | 0.578789 | 8.1:+20374589 | MS.gene48400:intron |
| AATAGGCTGAAAGTGTATGA+AGG | 0.580095 | 8.1:+20374047 | MS.gene48400:CDS |
| GAACATCTTGTTGTTTGAGG+AGG | 0.589500 | 8.1:-20371620 | None:intergenic |
| TACCAAGCAACCATTAAGCA+AGG | 0.592283 | 8.1:+20374969 | MS.gene48400:CDS |
| GTTTGAAGAAGGTGGTGACT+GGG | 0.592873 | 8.1:+20374016 | MS.gene48400:CDS |
| TTCGAGTGGACATGCAGTAG+AGG | 0.594533 | 8.1:-20374070 | None:intergenic |
| GCTGCAATGTATAGAATACC+AGG | 0.602890 | 8.1:-20373839 | None:intergenic |
| GGAGGAAAAGCTTGTCGGCG+AGG | 0.605693 | 8.1:-20371602 | None:intergenic |
| CACTCGAAATTTCGAGAAGG+CGG | 0.611108 | 8.1:+20374085 | MS.gene48400:CDS |
| CGCCTTCTCGAAATTTCGAG+TGG | 0.620270 | 8.1:-20374084 | None:intergenic |
| TTGTCGGCGAGGACAAGTTG+TGG | 0.627071 | 8.1:-20371591 | None:intergenic |
| AAAGAGCATTCTTAGCATCA+GGG | 0.643450 | 8.1:-20374947 | None:intergenic |
| AAAAGCGTTTGGAGTATCTG+TGG | 0.655763 | 8.1:+20374733 | MS.gene48400:CDS |
| GGAAGTGTGGATGCAAATAG+CGG | 0.661860 | 8.1:-20374628 | None:intergenic |
| AGGTGAGAGTGAAGTTCGTG+AGG | 0.662611 | 8.1:+20373622 | MS.gene48400:CDS |
| GTCCACTCGAAATTTCGAGA+AGG | 0.663292 | 8.1:+20374082 | MS.gene48400:CDS |
| AGTTGGGCAGAAGATGGACC+TGG | 0.674047 | 8.1:+20373821 | MS.gene48400:CDS |
| GACAGCTTGTTTGAAGAAGG+TGG | 0.675197 | 8.1:+20374008 | MS.gene48400:intron |
| GAGCATTCTTAGCATCAGGG+CGG | 0.753729 | 8.1:-20374944 | None:intergenic |
| GATGGAATCCAAGAACAATG+TGG | 0.760047 | 8.1:-20374108 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGAAAATTTATTTAATA+GGG | + | chr8.1:20371969-20371988 | MS.gene48400:intron | 10.0% |
| !! | TTGAAGAAAATTTATTTAAT+AGG | + | chr8.1:20371968-20371987 | MS.gene48400:intron | 10.0% |
| !! | TCAATAAATACATATCTTAA+TGG | + | chr8.1:20372918-20372937 | MS.gene48400:intron | 15.0% |
| !! | TGAAAAACAAAAGAAAATTA+GGG | - | chr8.1:20371755-20371774 | None:intergenic | 15.0% |
| !! | TTATATAGTGAAGAAAATTA+GGG | - | chr8.1:20371731-20371750 | None:intergenic | 15.0% |
| !! | TTTATATAGTGAAGAAAATT+AGG | - | chr8.1:20371732-20371751 | None:intergenic | 15.0% |
| !!! | TATAATTTTCTGTTAAGAAT+GGG | + | chr8.1:20373962-20373981 | MS.gene48400:intron | 15.0% |
| !! | AAAATCCAAAATTCACAATT+GGG | - | chr8.1:20371931-20371950 | None:intergenic | 20.0% |
| !! | ATATATCCTAGAAAGATTAA+TGG | - | chr8.1:20373333-20373352 | None:intergenic | 20.0% |
| !! | ATTACATATATTTGTTTCCA+GGG | + | chr8.1:20374848-20374867 | MS.gene48400:intron | 20.0% |
| !! | CAATATGTAAAAATAAACTC+TGG | - | chr8.1:20372546-20372565 | None:intergenic | 20.0% |
| !! | GTGAAAAACAAAAGAAAATT+AGG | - | chr8.1:20371756-20371775 | None:intergenic | 20.0% |
| !! | TATATCCTAGAAAGATTAAT+GGG | - | chr8.1:20373332-20373351 | None:intergenic | 20.0% |
| !! | TTAACAGAAAATTATAGCAA+AGG | - | chr8.1:20373958-20373977 | None:intergenic | 20.0% |
| !! | TTGAATTGTACTAATGTATT+TGG | + | chr8.1:20372041-20372060 | MS.gene48400:intron | 20.0% |
| !!! | ACAACTTATTCATCATTTTT+AGG | - | chr8.1:20372796-20372815 | None:intergenic | 20.0% |
| !!! | CTATAATTTTCTGTTAAGAA+TGG | + | chr8.1:20373961-20373980 | MS.gene48400:intron | 20.0% |
| !!! | TAAAATATAAAGGTGTCATA+GGG | - | chr8.1:20374161-20374180 | None:intergenic | 20.0% |
| ! | AAAAAGTTCATAGGTAGTAA+AGG | - | chr8.1:20374138-20374157 | None:intergenic | 25.0% |
| ! | AAATCCAAAATTCACAATTG+GGG | - | chr8.1:20371930-20371949 | None:intergenic | 25.0% |
| ! | AATTACCCATTAATCTTTCT+AGG | + | chr8.1:20373324-20373343 | MS.gene48400:intron | 25.0% |
| ! | AGAAAAGATAAATGGTGTAA+AGG | - | chr8.1:20374262-20374281 | None:intergenic | 25.0% |
| ! | CAAAACGGTGTAAAATATAA+AGG | - | chr8.1:20374171-20374190 | None:intergenic | 25.0% |
| ! | CAAAATCCAAAATTCACAAT+TGG | - | chr8.1:20371932-20371951 | None:intergenic | 25.0% |
| ! | CATTACATATATTTGTTTCC+AGG | + | chr8.1:20374847-20374866 | MS.gene48400:intron | 25.0% |
| ! | CGGTTAAAAGAAAAGATAAA+TGG | - | chr8.1:20374270-20374289 | None:intergenic | 25.0% |
| ! | TAAAACAACCAAGAAAGAAA+AGG | + | chr8.1:20372894-20372913 | MS.gene48400:intron | 25.0% |
| ! | TATAGAACTAAGCTTATAGT+TGG | + | chr8.1:20372848-20372867 | MS.gene48400:intron | 25.0% |
| ! | TGATTAGATTACAATGTTGT+GGG | + | chr8.1:20374816-20374835 | MS.gene48400:intron | 25.0% |
| ! | TTGATTAGATTACAATGTTG+TGG | + | chr8.1:20374815-20374834 | MS.gene48400:intron | 25.0% |
| !! | AAATAATAGTTTGTATCTCG+AGG | - | chr8.1:20373517-20373536 | None:intergenic | 25.0% |
| !! | AATTCTAGAGATTCTTGAAT+AGG | - | chr8.1:20372309-20372328 | None:intergenic | 25.0% |
| !! | ATTCTAGAGATTCTTGAATA+GGG | - | chr8.1:20372308-20372327 | None:intergenic | 25.0% |
| !! | TCATATGAATGTCTCATTTT+AGG | + | chr8.1:20373576-20373595 | MS.gene48400:intron | 25.0% |
| !! | TCTGTTCTTAAATGTTTTAC+TGG | + | chr8.1:20372074-20372093 | MS.gene48400:intron | 25.0% |
| !! | TTATTGATCCTTTTCTTTCT+TGG | - | chr8.1:20372905-20372924 | None:intergenic | 25.0% |
| !!! | ACTATAAGCTTAGTTCTATA+TGG | - | chr8.1:20372848-20372867 | None:intergenic | 25.0% |
| !!! | ATTTTGAAATTCATTTCAGC+TGG | + | chr8.1:20374581-20374600 | MS.gene48400:intron | 25.0% |
| !!! | CAAAATCCTTATTTTTCATC+CGG | + | chr8.1:20373654-20373673 | MS.gene48400:CDS | 25.0% |
| !!! | GTAAAATATAAAGGTGTCAT+AGG | - | chr8.1:20374162-20374181 | None:intergenic | 25.0% |
| !!! | TAGAAGTACCTTTTGTTTTA+AGG | - | chr8.1:20374222-20374241 | None:intergenic | 25.0% |
| !!! | TATTTTTACATATTGTGACC+TGG | + | chr8.1:20372551-20372570 | MS.gene48400:intron | 25.0% |
| AAACGAAAAACCAAGTGATT+TGG | - | chr8.1:20374787-20374806 | None:intergenic | 30.0% | |
| AAATCGACATATGATCTGAA+TGG | - | chr8.1:20372397-20372416 | None:intergenic | 30.0% | |
| AACGAAAAACCAAGTGATTT+GGG | - | chr8.1:20374786-20374805 | None:intergenic | 30.0% | |
| AAGTACAAAACCTAGAATAC+TGG | + | chr8.1:20373425-20373444 | MS.gene48400:intron | 30.0% | |
| AGTACAAAACCTAGAATACT+GGG | + | chr8.1:20373426-20373445 | MS.gene48400:intron | 30.0% | |
| AGTATAATGAGTCTTTGTTG+GGG | + | chr8.1:20372439-20372458 | MS.gene48400:intron | 30.0% | |
| CAGAGTTTCCTTAAAACAAA+AGG | + | chr8.1:20374211-20374230 | MS.gene48400:CDS | 30.0% | |
| CTTGTAAGATTCCAAAAACT+GGG | - | chr8.1:20374690-20374709 | None:intergenic | 30.0% | |
| GAACATAGAAGCAAAAAGAT+AGG | - | chr8.1:20374548-20374567 | None:intergenic | 30.0% | |
| GAGTATAATGAGTCTTTGTT+GGG | + | chr8.1:20372438-20372457 | MS.gene48400:intron | 30.0% | |
| GTGAAGAAAATTAGGGTTTA+CGG | - | chr8.1:20371724-20371743 | None:intergenic | 30.0% | |
| TCTTGTAAGATTCCAAAAAC+TGG | - | chr8.1:20374691-20374710 | None:intergenic | 30.0% | |
| TGAGTATAATGAGTCTTTGT+TGG | + | chr8.1:20372437-20372456 | MS.gene48400:intron | 30.0% | |
| TGTAAGATTGATAAAGTTGC+AGG | + | chr8.1:20374906-20374925 | MS.gene48400:CDS | 30.0% | |
| TGTTATTATGCTGGTCAAAA+CGG | - | chr8.1:20374186-20374205 | None:intergenic | 30.0% | |
| TTTACATGATGCTACATCAT+TGG | - | chr8.1:20372946-20372965 | None:intergenic | 30.0% | |
| TTTGACCAGCATAATAACAT+TGG | + | chr8.1:20374187-20374206 | MS.gene48400:CDS | 30.0% | |
| ! | ACTGTTTCTTTCCTTGATTA+TGG | - | chr8.1:20372741-20372760 | None:intergenic | 30.0% |
| ! | AGATGTTTTCAATTTCGTCA+AGG | + | chr8.1:20371671-20371690 | MS.gene48400:CDS | 30.0% |
| ! | ATCAAGGAAAGAAACAGTTT+TGG | + | chr8.1:20372743-20372762 | MS.gene48400:intron | 30.0% |
| ! | CAAAACTTTCATTTTCACTC+TGG | + | chr8.1:20373082-20373101 | MS.gene48400:intron | 30.0% |
| ! | CAGAGTGAAAATGAAAGTTT+TGG | - | chr8.1:20373084-20373103 | None:intergenic | 30.0% |
| ! | CTTGTATTGACAACCATATA+AGG | - | chr8.1:20374412-20374431 | None:intergenic | 30.0% |
| ! | TAACTAGACTAATTTGCATC+AGG | + | chr8.1:20374320-20374339 | MS.gene48400:intron | 30.0% |
| ! | TCCACATCTTAAAGAGTTTT+TGG | + | chr8.1:20374383-20374402 | MS.gene48400:CDS | 30.0% |
| ! | TTAACCCCAATTGTGAATTT+TGG | + | chr8.1:20371923-20371942 | MS.gene48400:intron | 30.0% |
| ! | TTTTGGATTTTGAATGCACT+AGG | + | chr8.1:20371940-20371959 | MS.gene48400:intron | 30.0% |
| !! | AAAGCATTGACAAAGCTAAA+AGG | + | chr8.1:20373898-20373917 | MS.gene48400:CDS | 30.0% |
| !! | CTTAGTTCTATATGGATGTA+TGG | - | chr8.1:20372840-20372859 | None:intergenic | 30.0% |
| !! | TAGAATCACTTTTGAAGATG+TGG | - | chr8.1:20373238-20373257 | None:intergenic | 30.0% |
| !! | TCCAAAAACTCTTTAAGATG+TGG | - | chr8.1:20374387-20374406 | None:intergenic | 30.0% |
| !! | TGTCATTTATTCCCAGTTTT+TGG | + | chr8.1:20374676-20374695 | MS.gene48400:CDS | 30.0% |
| !!! | TCTTTTGTTTTTCACAGACA+TGG | + | chr8.1:20371761-20371780 | MS.gene48400:intron | 30.0% |
| !!! | TTTAGCTTTGTCAATGCTTT+TGG | - | chr8.1:20373898-20373917 | None:intergenic | 30.0% |
| AAAAACCCCAGAATAAGCAA+GGG | - | chr8.1:20372580-20372599 | None:intergenic | 35.0% | |
| AAATAGCAAAGCAACGAAGA+GGG | - | chr8.1:20373198-20373217 | None:intergenic | 35.0% | |
| AACTTCAATCAAACTGCTAG+AGG | - | chr8.1:20372342-20372361 | None:intergenic | 35.0% | |
| AAGTCTTTCTTCTCAGCATT+TGG | + | chr8.1:20374429-20374448 | MS.gene48400:CDS | 35.0% | |
| ACTTCAATCAAACTGCTAGA+GGG | - | chr8.1:20372341-20372360 | None:intergenic | 35.0% | |
| AGAACTAAGCTTATAGTTGG+AGG | + | chr8.1:20372851-20372870 | MS.gene48400:intron | 35.0% | |
| AGAATAGAAAATGCAAAGGC+TGG | + | chr8.1:20373449-20373468 | MS.gene48400:intron | 35.0% | |
| ATAGGTAGTAAAGGTTGAGA+TGG | - | chr8.1:20374129-20374148 | None:intergenic | 35.0% | |
| CATGGAAATCACCATAATCA+AGG | + | chr8.1:20372727-20372746 | MS.gene48400:intron | 35.0% | |
| CTTGATTATGGTGATTTCCA+TGG | - | chr8.1:20372729-20372748 | None:intergenic | 35.0% | |
| GCAGTTTGATTGAAGTTGAA+CGG | + | chr8.1:20372345-20372364 | MS.gene48400:intron | 35.0% | |
| GCCAAGAAATAACAGAACAA+CGG | - | chr8.1:20374290-20374309 | None:intergenic | 35.0% | |
| GTATAATGAGTCTTTGTTGG+GGG | + | chr8.1:20372440-20372459 | MS.gene48400:intron | 35.0% | |
| GTATTCTATACATTGCAGCT+TGG | + | chr8.1:20373843-20373862 | MS.gene48400:CDS | 35.0% | |
| GTCATAGGGAAAAAGTTCAT+AGG | - | chr8.1:20374147-20374166 | None:intergenic | 35.0% | |
| TATATACCCAATGTCACCAA+TGG | + | chr8.1:20372649-20372668 | MS.gene48400:intron | 35.0% | |
| TATGAGCTATCGTTAGTACA+AGG | - | chr8.1:20373561-20373580 | None:intergenic | 35.0% | |
| TCCAAACATACTTCTTTAGC+AGG | - | chr8.1:20372267-20372286 | None:intergenic | 35.0% | |
| TCTGTCCAATGTTATTATGC+TGG | - | chr8.1:20374195-20374214 | None:intergenic | 35.0% | |
| TCTTCAAACAAGCTGTCATA+TGG | - | chr8.1:20374005-20374024 | None:intergenic | 35.0% | |
| TGATCTCTCTCATGTAATAC+CGG | - | chr8.1:20374652-20374671 | None:intergenic | 35.0% | |
| TGCAATTACTATGACACATC+TGG | - | chr8.1:20373476-20373495 | None:intergenic | 35.0% | |
| TGGGAGAATAGAAAATGCAA+AGG | + | chr8.1:20373445-20373464 | MS.gene48400:intron | 35.0% | |
| TTAATAATAACCGCAGAGAC+AGG | - | chr8.1:20373306-20373325 | None:intergenic | 35.0% | |
| TTAGATTACAATGTTGTGGG+AGG | + | chr8.1:20374819-20374838 | MS.gene48400:intron | 35.0% | |
| TTCAATTTCGTCAAGGAACA+TGG | + | chr8.1:20371678-20371697 | MS.gene48400:CDS | 35.0% | |
| TTCTATTCTCCCAGTATTCT+AGG | - | chr8.1:20373438-20373457 | None:intergenic | 35.0% | |
| ! | AATAGGCTGAAAGTGTATGA+AGG | + | chr8.1:20374047-20374066 | MS.gene48400:CDS | 35.0% |
| ! | ATTTTCATCTGTCAGCTCAA+AGG | - | chr8.1:20373048-20373067 | None:intergenic | 35.0% |
| ! | TATGACAGCTTGTTTGAAGA+AGG | + | chr8.1:20374005-20374024 | MS.gene48400:intron | 35.0% |
| ! | TCCTGCTAAAGAAGTATGTT+TGG | + | chr8.1:20372263-20372282 | MS.gene48400:intron | 35.0% |
| !! | AAAGAGCATTCTTAGCATCA+GGG | - | chr8.1:20374950-20374969 | None:intergenic | 35.0% |
| !! | ACCGTTGTTCTGTTATTTCT+TGG | + | chr8.1:20374286-20374305 | MS.gene48400:intron | 35.0% |
| !! | ATCATCAATTTTAGCACGCA+TGG | - | chr8.1:20371850-20371869 | None:intergenic | 35.0% |
| !! | CTTATTTTTCATCCGGATTG+GGG | + | chr8.1:20373661-20373680 | MS.gene48400:CDS | 35.0% |
| !! | CTTGAACATCTTGTTGTTTG+AGG | - | chr8.1:20371626-20371645 | None:intergenic | 35.0% |
| !! | GAGTTTTTGGACTCCTTATA+TGG | + | chr8.1:20374396-20374415 | MS.gene48400:CDS | 35.0% |
| !! | TAAAGAGCATTCTTAGCATC+AGG | - | chr8.1:20374951-20374970 | None:intergenic | 35.0% |
| !! | TATCACGTTTTATTGCAGCT+GGG | + | chr8.1:20374874-20374893 | MS.gene48400:CDS | 35.0% |
| !!! | CCTTATTTTTCATCCGGATT+GGG | + | chr8.1:20373660-20373679 | MS.gene48400:CDS | 35.0% |
| !!! | TCCTTATTTTTCATCCGGAT+TGG | + | chr8.1:20373659-20373678 | MS.gene48400:CDS | 35.0% |
| !!! | TGTTTTGAGGCTAGCTATTA+TGG | - | chr8.1:20372686-20372705 | None:intergenic | 35.0% |
| AAACCAAGACTGTTGCAGTT+GGG | + | chr8.1:20373805-20373824 | MS.gene48400:CDS | 40.0% | |
| AAGGAGACTTCTTGTTGAAC+AGG | + | chr8.1:20374988-20375007 | MS.gene48400:CDS | 40.0% | |
| AATAAAACGTGATAGCTCCC+TGG | - | chr8.1:20374868-20374887 | None:intergenic | 40.0% | |
| ACATTGCAGCTTGGTTTCTT+TGG | + | chr8.1:20373852-20373871 | MS.gene48400:CDS | 40.0% | |
| ATTCTTGAATAGGGAACACG+TGG | - | chr8.1:20372299-20372318 | None:intergenic | 40.0% | |
| CAAAACGGAATCAGCAACTA+GGG | - | chr8.1:20371802-20371821 | None:intergenic | 40.0% | |
| CAAATAGCAAAGCAACGAAG+AGG | - | chr8.1:20373199-20373218 | None:intergenic | 40.0% | |
| CAAGAAGTCTCCTTGCTTAA+TGG | - | chr8.1:20374982-20375001 | None:intergenic | 40.0% | |
| CAATGTCACCAATGGCTTAT+GGG | + | chr8.1:20372657-20372676 | MS.gene48400:intron | 40.0% | |
| CAGGCTAAATTTCATCCATC+AGG | - | chr8.1:20373287-20373306 | None:intergenic | 40.0% | |
| CCATCAGGAATTCTAAGTTC+AGG | - | chr8.1:20373272-20373291 | None:intergenic | 40.0% | |
| CCCAATCCGGATGAAAAATA+AGG | - | chr8.1:20373663-20373682 | None:intergenic | 40.0% | |
| CCTGAACTTAGAATTCCTGA+TGG | + | chr8.1:20373269-20373288 | MS.gene48400:intron | 40.0% | |
| CTTCAATCAAACTGCTAGAG+GGG | - | chr8.1:20372340-20372359 | None:intergenic | 40.0% | |
| GAAAAACCCCAGAATAAGCA+AGG | - | chr8.1:20372581-20372600 | None:intergenic | 40.0% | |
| GACACGATCCATATCCAAAA+CGG | - | chr8.1:20371817-20371836 | None:intergenic | 40.0% | |
| GATGGAATCCAAGAACAATG+TGG | - | chr8.1:20374111-20374130 | None:intergenic | 40.0% | |
| GCAACTAGGGTTTCGTATAA+AGG | - | chr8.1:20371789-20371808 | None:intergenic | 40.0% | |
| GCTGCAATGTATAGAATACC+AGG | - | chr8.1:20373842-20373861 | None:intergenic | 40.0% | |
| TACCAAGCAACCATTAAGCA+AGG | + | chr8.1:20374969-20374988 | MS.gene48400:CDS | 40.0% | |
| TCAATCACTGTCAAGATCTC+AGG | - | chr8.1:20374357-20374376 | None:intergenic | 40.0% | |
| TGAAATTTAGCCTGTCTCTG+CGG | + | chr8.1:20373293-20373312 | MS.gene48400:intron | 40.0% | |
| TGAATGCATCCCAAATCACT+TGG | + | chr8.1:20374774-20374793 | MS.gene48400:intron | 40.0% | |
| TGTTATCTTGAGATGCTCCA+AGG | - | chr8.1:20373784-20373803 | None:intergenic | 40.0% | |
| TTCAATCAAACTGCTAGAGG+GGG | - | chr8.1:20372339-20372358 | None:intergenic | 40.0% | |
| TTTGAGGAGGAAAAGCTTGT+CGG | - | chr8.1:20371610-20371629 | None:intergenic | 40.0% | |
| ! | ACTCTCACCTAAGTTTTCCT+CGG | - | chr8.1:20373612-20373631 | None:intergenic | 40.0% |
| ! | CAAAGGCTGGTGATTTTTCA+GGG | - | chr8.1:20373031-20373050 | None:intergenic | 40.0% |
| ! | CATAAGCCATTGGTGACATT+GGG | - | chr8.1:20372658-20372677 | None:intergenic | 40.0% |
| ! | GACTAATTTGCATCAGGTAG+TGG | + | chr8.1:20374326-20374345 | MS.gene48400:intron | 40.0% |
| ! | TCAAAGGCTGGTGATTTTTC+AGG | - | chr8.1:20373032-20373051 | None:intergenic | 40.0% |
| ! | TTTGAGGCTAGCTATTATGG+TGG | - | chr8.1:20372683-20372702 | None:intergenic | 40.0% |
| !! | AAAAGCGTTTGGAGTATCTG+TGG | + | chr8.1:20374733-20374752 | MS.gene48400:CDS | 40.0% |
| !! | CTATCACGTTTTATTGCAGC+TGG | + | chr8.1:20374873-20374892 | MS.gene48400:CDS | 40.0% |
| !! | CTCTTCGTTGCTTTGCTATT+TGG | + | chr8.1:20373197-20373216 | MS.gene48400:intron | 40.0% |
| !! | GAACATCTTGTTGTTTGAGG+AGG | - | chr8.1:20371623-20371642 | None:intergenic | 40.0% |
| !!! | TGCTGATTCCGTTTTGGATA+TGG | + | chr8.1:20371806-20371825 | MS.gene48400:CDS | 40.0% |
| ACTGTAGGACATCTTCAGTC+TGG | - | chr8.1:20373172-20373191 | None:intergenic | 45.0% | |
| ACTTGATTCCAGCAGCAGAA+AGG | - | chr8.1:20373731-20373750 | None:intergenic | 45.0% | |
| CACTCGAAATTTCGAGAAGG+CGG | + | chr8.1:20374085-20374104 | MS.gene48400:CDS | 45.0% | |
| CATGGCATCTACCATTCACT+GGG | - | chr8.1:20372711-20372730 | None:intergenic | 45.0% | |
| CCAAAACGGAATCAGCAACT+AGG | - | chr8.1:20371803-20371822 | None:intergenic | 45.0% | |
| CCAATGTCACCAATGGCTTA+TGG | + | chr8.1:20372656-20372675 | MS.gene48400:intron | 45.0% | |
| CCTGACGGAGCAAATTAAGT+TGG | + | chr8.1:20374604-20374623 | MS.gene48400:CDS | 45.0% | |
| CTCAAAACATGCCCAGTGAA+TGG | + | chr8.1:20372697-20372716 | MS.gene48400:intron | 45.0% | |
| CTCATGTAATACCGGAAGTG+TGG | - | chr8.1:20374644-20374663 | None:intergenic | 45.0% | |
| CTCCTTGCTTAATGGTTGCT+TGG | - | chr8.1:20374974-20374993 | None:intergenic | 45.0% | |
| GAAACCAAGACTGTTGCAGT+TGG | + | chr8.1:20373804-20373823 | MS.gene48400:CDS | 45.0% | |
| GAGTGTGACAATTGAAGCCA+TGG | + | chr8.1:20374709-20374728 | MS.gene48400:CDS | 45.0% | |
| GCTATTTGCATCCACACTTC+CGG | + | chr8.1:20374630-20374649 | MS.gene48400:CDS | 45.0% | |
| GTCCACTCGAAATTTCGAGA+AGG | + | chr8.1:20374082-20374101 | MS.gene48400:CDS | 45.0% | |
| GTGACTGGGAAAGGAAGAAT+AGG | + | chr8.1:20374030-20374049 | MS.gene48400:CDS | 45.0% | |
| GTTTGAAGAAGGTGGTGACT+GGG | + | chr8.1:20374016-20374035 | MS.gene48400:CDS | 45.0% | |
| TACATACCTTGTCCCCAATC+CGG | - | chr8.1:20373676-20373695 | None:intergenic | 45.0% | |
| TGGTCACCCTTGCTTATTCT+GGG | + | chr8.1:20372571-20372590 | MS.gene48400:intron | 45.0% | |
| TGTTTGAAGAAGGTGGTGAC+TGG | + | chr8.1:20374015-20374034 | MS.gene48400:CDS | 45.0% | |
| TTCCAGCAGCAGAAAGGAAA+AGG | - | chr8.1:20373725-20373744 | None:intergenic | 45.0% | |
| ! | AGTGAGGTGGACATTGACTA+TGG | - | chr8.1:20373127-20373146 | None:intergenic | 45.0% |
| ! | ATTCATTTCAGCTGGCCTGA+CGG | + | chr8.1:20374589-20374608 | MS.gene48400:intron | 45.0% |
| ! | CATTCACTGGGCATGTTTTG+AGG | - | chr8.1:20372699-20372718 | None:intergenic | 45.0% |
| ! | CATTTTCACTCTGGCAGAGA+AGG | + | chr8.1:20373091-20373110 | MS.gene48400:intron | 45.0% |
| ! | CCATAAGCCATTGGTGACAT+TGG | - | chr8.1:20372659-20372678 | None:intergenic | 45.0% |
| ! | GACAGCTTGTTTGAAGAAGG+TGG | + | chr8.1:20374008-20374027 | MS.gene48400:intron | 45.0% |
| ! | GGAAGTGTGGATGCAAATAG+CGG | - | chr8.1:20374631-20374650 | None:intergenic | 45.0% |
| ! | GGATATGGATCGTGTCCTTT+TGG | + | chr8.1:20371821-20371840 | MS.gene48400:CDS | 45.0% |
| ! | TACTCCAAACGCTTTTGCCA+TGG | - | chr8.1:20374729-20374748 | None:intergenic | 45.0% |
| ! | TTCCTTTTCCTTTCTGCTGC+TGG | + | chr8.1:20373720-20373739 | MS.gene48400:intron | 45.0% |
| !! | CCAACTTAATTTGCTCCGTC+AGG | - | chr8.1:20374607-20374626 | None:intergenic | 45.0% |
| !!! | CCTAGTTGCTGATTCCGTTT+TGG | + | chr8.1:20371800-20371819 | MS.gene48400:CDS | 45.0% |
| !!! | GGTGATTTTTCAGGGCACAA+CGG | - | chr8.1:20373023-20373042 | None:intergenic | 45.0% |
| !!! | TTTTAGGATTGCTGATGCCG+AGG | + | chr8.1:20373592-20373611 | MS.gene48400:intron | 45.0% |
| AACACTGTCCTCTATGCACC+AGG | + | chr8.1:20373752-20373771 | MS.gene48400:intron | 50.0% | |
| AAGAAGGTGGTGACTGGGAA+AGG | + | chr8.1:20374021-20374040 | MS.gene48400:CDS | 50.0% | |
| AATGTCCACCTCACTTGAGG+AGG | + | chr8.1:20373132-20373151 | MS.gene48400:intron | 50.0% | |
| AGGGTTTACGGAGAGAGAAG+AGG | - | chr8.1:20371712-20371731 | None:intergenic | 50.0% | |
| AGGTGAGAGTGAAGTTCGTG+AGG | + | chr8.1:20373622-20373641 | MS.gene48400:CDS | 50.0% | |
| CAACGAAGAGGGTTCACTGT+AGG | - | chr8.1:20373187-20373206 | None:intergenic | 50.0% | |
| CAGAATAAGCAAGGGTGACC+AGG | - | chr8.1:20372572-20372591 | None:intergenic | 50.0% | |
| CCAGTGAATGGTAGATGCCA+TGG | + | chr8.1:20372709-20372728 | MS.gene48400:intron | 50.0% | |
| CCATGGCATCTACCATTCAC+TGG | - | chr8.1:20372712-20372731 | None:intergenic | 50.0% | |
| CGATCACACGAGACAGTTTC+TGG | - | chr8.1:20375016-20375035 | None:intergenic | 50.0% | |
| CGCCTTCTCGAAATTTCGAG+TGG | - | chr8.1:20374087-20374106 | None:intergenic | 50.0% | |
| CTGGTCACCCTTGCTTATTC+TGG | + | chr8.1:20372570-20372589 | MS.gene48400:intron | 50.0% | |
| GAGCATTCTTAGCATCAGGG+CGG | - | chr8.1:20374947-20374966 | None:intergenic | 50.0% | |
| GCAGCTTGGTTTCTTTGGCA+TGG | + | chr8.1:20373857-20373876 | MS.gene48400:CDS | 50.0% | |
| GCTGATGCCGAGGAAAACTT+AGG | + | chr8.1:20373602-20373621 | MS.gene48400:CDS | 50.0% | |
| GGGTTTACGGAGAGAGAAGA+GGG | - | chr8.1:20371711-20371730 | None:intergenic | 50.0% | |
| GGTCACCCTTGCTTATTCTG+GGG | + | chr8.1:20372572-20372591 | MS.gene48400:intron | 50.0% | |
| GTCAATGTCCACCTCACTTG+AGG | + | chr8.1:20373129-20373148 | MS.gene48400:intron | 50.0% | |
| TAGCACGCATGGAGTCCAAA+AGG | - | chr8.1:20371839-20371858 | None:intergenic | 50.0% | |
| TATGCACCAGGAGAAAGCCT+TGG | + | chr8.1:20373764-20373783 | MS.gene48400:intron | 50.0% | |
| TATGGTGGCCCATAAGCCAT+TGG | - | chr8.1:20372668-20372687 | None:intergenic | 50.0% | |
| TCATCTGTCAGCTCAAAGGC+TGG | - | chr8.1:20373044-20373063 | None:intergenic | 50.0% | |
| TGAAGTTCGTGAGGCTCACT+TGG | + | chr8.1:20373631-20373650 | MS.gene48400:CDS | 50.0% | |
| TGTTGCAGTTGGGCAGAAGA+TGG | + | chr8.1:20373815-20373834 | MS.gene48400:CDS | 50.0% | |
| TTCGAGTGGACATGCAGTAG+AGG | - | chr8.1:20374073-20374092 | None:intergenic | 50.0% | |
| ! | TTTCATCCGGATTGGGGACA+AGG | + | chr8.1:20373667-20373686 | MS.gene48400:CDS | 50.0% |
| !! | GAAGCCATGGCAAAAGCGTT+TGG | + | chr8.1:20374722-20374741 | MS.gene48400:CDS | 50.0% |
| AGTTGGGCAGAAGATGGACC+TGG | + | chr8.1:20373821-20373840 | MS.gene48400:CDS | 55.0% | |
| CATTGCAGCCTCCTCAAGTG+AGG | - | chr8.1:20373143-20373162 | None:intergenic | 55.0% | |
| CTGCCCAACTGCAACAGTCT+TGG | - | chr8.1:20373811-20373830 | None:intergenic | 55.0% | |
| GAAGGCGGCCACATTGTTCT+TGG | + | chr8.1:20374100-20374119 | MS.gene48400:CDS | 55.0% | |
| GATGCTCCAAGGCTTTCTCC+TGG | - | chr8.1:20373773-20373792 | None:intergenic | 55.0% | |
| GGCTTTCTCCTGGTGCATAG+AGG | - | chr8.1:20373763-20373782 | None:intergenic | 55.0% | |
| TTGTCGGCGAGGACAAGTTG+TGG | - | chr8.1:20371594-20371613 | None:intergenic | 55.0% | |
| GGAGGAAAAGCTTGTCGGCG+AGG | - | chr8.1:20371605-20371624 | None:intergenic | 60.0% | |
| TGCAGCCTCCTCAAGTGAGG+TGG | - | chr8.1:20373140-20373159 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 20371561 | 20375043 | 20371561 | ID=MS.gene48400 |
| chr8.1 | mRNA | 20371561 | 20375043 | 20371561 | ID=MS.gene48400.t1;Parent=MS.gene48400 |
| chr8.1 | exon | 20371561 | 20371699 | 20371561 | ID=MS.gene48400.t1.exon1;Parent=MS.gene48400.t1 |
| chr8.1 | CDS | 20371561 | 20371699 | 20371561 | ID=cds.MS.gene48400.t1;Parent=MS.gene48400.t1 |
| chr8.1 | exon | 20371778 | 20371892 | 20371778 | ID=MS.gene48400.t1.exon2;Parent=MS.gene48400.t1 |
| chr8.1 | CDS | 20371778 | 20371892 | 20371778 | ID=cds.MS.gene48400.t1;Parent=MS.gene48400.t1 |
| chr8.1 | exon | 20373598 | 20373688 | 20373598 | ID=MS.gene48400.t1.exon3;Parent=MS.gene48400.t1 |
| chr8.1 | CDS | 20373598 | 20373688 | 20373598 | ID=cds.MS.gene48400.t1;Parent=MS.gene48400.t1 |
| chr8.1 | exon | 20373774 | 20373919 | 20373774 | ID=MS.gene48400.t1.exon4;Parent=MS.gene48400.t1 |
| chr8.1 | CDS | 20373774 | 20373919 | 20373774 | ID=cds.MS.gene48400.t1;Parent=MS.gene48400.t1 |
| chr8.1 | exon | 20374013 | 20374232 | 20374013 | ID=MS.gene48400.t1.exon5;Parent=MS.gene48400.t1 |
| chr8.1 | CDS | 20374013 | 20374232 | 20374013 | ID=cds.MS.gene48400.t1;Parent=MS.gene48400.t1 |
| chr8.1 | exon | 20374342 | 20374450 | 20374342 | ID=MS.gene48400.t1.exon6;Parent=MS.gene48400.t1 |
| chr8.1 | CDS | 20374342 | 20374450 | 20374342 | ID=cds.MS.gene48400.t1;Parent=MS.gene48400.t1 |
| chr8.1 | exon | 20374600 | 20374768 | 20374600 | ID=MS.gene48400.t1.exon7;Parent=MS.gene48400.t1 |
| chr8.1 | CDS | 20374600 | 20374768 | 20374600 | ID=cds.MS.gene48400.t1;Parent=MS.gene48400.t1 |
| chr8.1 | exon | 20374869 | 20375043 | 20374869 | ID=MS.gene48400.t1.exon8;Parent=MS.gene48400.t1 |
| chr8.1 | CDS | 20374869 | 20375043 | 20374869 | ID=cds.MS.gene48400.t1;Parent=MS.gene48400.t1 |
| Gene Sequence |
| Protein sequence |
