Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48279.t1 | XP_003608889.1 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.70E-190 | 675.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48279.t1 | Q93Y35 | 76.0 | 387 | 93 | 0 | 1 | 387 | 1 | 387 | 1.2e-160 | 567.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48279.t1 | G7JMM6 | 99.5 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 1.3e-190 | 675.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05190 | MS.gene48279 | 0.823656 | 1.23E-53 | -1.69E-46 |
| MS.gene057144 | MS.gene48279 | 0.967731 | 1.10E-127 | -1.69E-46 |
| MS.gene057145 | MS.gene48279 | 0.962483 | 6.24E-121 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48279.t1 | MTR_4g104080 | 99.483 | 387 | 2 | 0 | 1 | 387 | 1 | 387 | 0.0 | 783 |
| MS.gene48279.t1 | MTR_8g046560 | 84.342 | 281 | 25 | 4 | 86 | 366 | 260 | 521 | 2.15e-156 | 451 |
| MS.gene48279.t1 | MTR_8g464820 | 95.673 | 208 | 8 | 1 | 96 | 303 | 160 | 366 | 2.77e-141 | 406 |
| MS.gene48279.t1 | MTR_7g076160 | 24.291 | 247 | 180 | 3 | 127 | 371 | 173 | 414 | 5.65e-19 | 88.6 |
| MS.gene48279.t1 | MTR_8g432630 | 23.481 | 362 | 254 | 11 | 23 | 371 | 65 | 416 | 1.54e-18 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48279.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
| MS.gene48279.t1 | AT4G24820 | 82.687 | 387 | 67 | 0 | 1 | 387 | 1 | 387 | 0.0 | 661 |
| MS.gene48279.t1 | AT3G61140 | 25.100 | 251 | 180 | 4 | 124 | 372 | 169 | 413 | 5.59e-18 | 85.5 |
Find 76 sgRNAs with CRISPR-Local
Find 225 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAAGTCTCCTTGCTTAA+TGG | 0.172394 | 8.1:+20439341 | None:intergenic |
| TTTAGCTTTGTCAATGCTTT+TGG | 0.209748 | 8.1:+20440425 | None:intergenic |
| CGATCACACGAGACAGTTTC+TGG | 0.218957 | 8.1:+20439307 | None:intergenic |
| ACATTGCAGCTTGGTTTCTT+TGG | 0.250558 | 8.1:-20440468 | MS.gene48279:CDS |
| CCTAGTTGCTGATTCCGTTT+TGG | 0.319218 | 8.1:-20442519 | MS.gene48279:CDS |
| GTAAAATATAAAGGTGTCAT+AGG | 0.319394 | 8.1:+20440161 | None:intergenic |
| GAAGGCGGCCACATTGTTCT+TGG | 0.328664 | 8.1:-20440220 | MS.gene48279:CDS |
| GGATATGGATCGTGTCCTTT+TGG | 0.338072 | 8.1:-20442498 | MS.gene48279:CDS |
| GCAACTAGGGTTTCGTATAA+AGG | 0.352561 | 8.1:+20442533 | None:intergenic |
| AAAGCATTGACAAAGCTAAA+AGG | 0.352604 | 8.1:-20440422 | MS.gene48279:intron |
| AAGTCTTTCTTCTCAGCATT+TGG | 0.381841 | 8.1:-20439891 | MS.gene48279:intron |
| CTTGAACATCTTGTTGTTTG+AGG | 0.383548 | 8.1:+20442696 | None:intergenic |
| CTGCCCAACTGCAACAGTCT+TGG | 0.384938 | 8.1:+20440512 | None:intergenic |
| CAAAACGGTGTAAAATATAA+AGG | 0.388515 | 8.1:+20440152 | None:intergenic |
| AAGGAGACTTCTTGTTGAAC+AGG | 0.394711 | 8.1:-20439332 | MS.gene48279:CDS |
| TGTAAGATTGATAAAGTTGC+AGG | 0.397494 | 8.1:-20439414 | MS.gene48279:CDS |
| TAAAGAGCATTCTTAGCATC+AGG | 0.401822 | 8.1:+20439372 | None:intergenic |
| GAAGCCATGGCAAAAGCGTT+TGG | 0.405490 | 8.1:-20439598 | MS.gene48279:CDS |
| TCAATCACTGTCAAGATCTC+AGG | 0.407014 | 8.1:+20439966 | None:intergenic |
| GTCTCGTGTGATCGATCTTT+AGG | 0.409640 | 8.1:-20439298 | None:intergenic |
| CTTGTATTGACAACCATATA+AGG | 0.412125 | 8.1:+20439911 | None:intergenic |
| GCTATTTGCATCCACACTTC+CGG | 0.415118 | 8.1:-20439690 | MS.gene48279:CDS |
| CTCCTTGCTTAATGGTTGCT+TGG | 0.422700 | 8.1:+20439349 | None:intergenic |
| CAGAGTTTCCTTAAAACAAA+AGG | 0.442207 | 8.1:-20440109 | MS.gene48279:intron |
| CCAACTTAATTTGCTCCGTC+AGG | 0.445020 | 8.1:+20439716 | None:intergenic |
| CCAAAACGGAATCAGCAACT+AGG | 0.455755 | 8.1:+20442519 | None:intergenic |
| GCAGCTTGGTTTCTTTGGCA+TGG | 0.461721 | 8.1:-20440463 | MS.gene48279:CDS |
| TGTTTGAAGAAGGTGGTGAC+TGG | 0.465631 | 8.1:-20440305 | MS.gene48279:CDS |
| TGTTATTATGCTGGTCAAAA+CGG | 0.481534 | 8.1:+20440137 | None:intergenic |
| AAGAAGGTGGTGACTGGGAA+AGG | 0.487909 | 8.1:-20440299 | MS.gene48279:CDS |
| TACATACCTTGTCCCCAATC+CGG | 0.495723 | 8.1:+20440647 | None:intergenic |
| TGAAGTTCGTGAGGCTCACT+TGG | 0.496675 | 8.1:-20440689 | MS.gene48279:CDS |
| TTTGAGGAGGAAAAGCTTGT+CGG | 0.496982 | 8.1:+20442712 | None:intergenic |
| TTTCATCCGGATTGGGGACA+AGG | 0.498726 | 8.1:-20440653 | MS.gene48279:intron |
| TATGACAGCTTGTTTGAAGA+AGG | 0.509351 | 8.1:-20440315 | MS.gene48279:intron |
| GTATTCTATACATTGCAGCT+TGG | 0.510078 | 8.1:-20440477 | MS.gene48279:CDS |
| TGTTGCAGTTGGGCAGAAGA+TGG | 0.511519 | 8.1:-20440505 | MS.gene48279:CDS |
| TTTGACCAGCATAATAACAT+TGG | 0.511922 | 8.1:-20440133 | MS.gene48279:CDS |
| TTCAATTTCGTCAAGGAACA+TGG | 0.512182 | 8.1:-20442641 | MS.gene48279:intron |
| TGATCTCTCTCATGTAATAC+CGG | 0.514625 | 8.1:+20439671 | None:intergenic |
| TCTGTCCAATGTTATTATGC+TGG | 0.519046 | 8.1:+20440128 | None:intergenic |
| GTGACTGGGAAAGGAAGAAT+AGG | 0.520244 | 8.1:-20440290 | MS.gene48279:CDS |
| TGTTATCTTGAGATGCTCCA+AGG | 0.535770 | 8.1:+20440539 | None:intergenic |
| AAACCAAGACTGTTGCAGTT+GGG | 0.539841 | 8.1:-20440515 | MS.gene48279:CDS |
| GCTGATGCCGAGGAAAACTT+AGG | 0.544982 | 8.1:-20440718 | MS.gene48279:CDS |
| TAAAATATAAAGGTGTCATA+GGG | 0.545376 | 8.1:+20440162 | None:intergenic |
| GACACGATCCATATCCAAAA+CGG | 0.546950 | 8.1:+20442505 | None:intergenic |
| GAAACCAAGACTGTTGCAGT+TGG | 0.547733 | 8.1:-20440516 | MS.gene48279:CDS |
| CCTGACGGAGCAAATTAAGT+TGG | 0.551415 | 8.1:-20439716 | MS.gene48279:CDS |
| TAGCACGCATGGAGTCCAAA+AGG | 0.551715 | 8.1:+20442483 | None:intergenic |
| ATAGGTAGTAAAGGTTGAGA+TGG | 0.554018 | 8.1:+20440194 | None:intergenic |
| TATGCACCAGGAGAAAGCCT+TGG | 0.557453 | 8.1:-20440556 | MS.gene48279:intron |
| CAAAACGGAATCAGCAACTA+GGG | 0.569243 | 8.1:+20442520 | None:intergenic |
| GAGTGTGACAATTGAAGCCA+TGG | 0.570854 | 8.1:-20439611 | MS.gene48279:CDS |
| ATCGCGTCAATGGCAAATGA+AGG | 0.573429 | 8.1:-20442767 | None:intergenic |
| CTCATGTAATACCGGAAGTG+TGG | 0.574056 | 8.1:+20439679 | None:intergenic |
| ATTCATTTCAGCTGGCCTGA+CGG | 0.578789 | 8.1:-20439731 | MS.gene48279:intron |
| AATAGGCTGAAAGTGTATGA+AGG | 0.580095 | 8.1:-20440273 | MS.gene48279:CDS |
| GAACATCTTGTTGTTTGAGG+AGG | 0.589500 | 8.1:+20442699 | None:intergenic |
| TACCAAGCAACCATTAAGCA+AGG | 0.592283 | 8.1:-20439351 | MS.gene48279:CDS |
| GTTTGAAGAAGGTGGTGACT+GGG | 0.592873 | 8.1:-20440304 | MS.gene48279:CDS |
| TTCGAGTGGACATGCAGTAG+AGG | 0.594533 | 8.1:+20440250 | None:intergenic |
| GCTGCAATGTATAGAATACC+AGG | 0.602890 | 8.1:+20440481 | None:intergenic |
| GGAGGAAAAGCTTGTCGGCG+AGG | 0.605693 | 8.1:+20442717 | None:intergenic |
| CACTCGAAATTTCGAGAAGG+CGG | 0.611108 | 8.1:-20440235 | MS.gene48279:CDS |
| CGCCTTCTCGAAATTTCGAG+TGG | 0.620270 | 8.1:+20440236 | None:intergenic |
| TTGTCGGCGAGGACAAGTTG+TGG | 0.627071 | 8.1:+20442728 | None:intergenic |
| AAAGAGCATTCTTAGCATCA+GGG | 0.643450 | 8.1:+20439373 | None:intergenic |
| AAAAGCGTTTGGAGTATCTG+TGG | 0.655763 | 8.1:-20439587 | MS.gene48279:CDS |
| GGAAGTGTGGATGCAAATAG+CGG | 0.661860 | 8.1:+20439692 | None:intergenic |
| AGGTGAGAGTGAAGTTCGTG+AGG | 0.662611 | 8.1:-20440698 | MS.gene48279:CDS |
| GTCCACTCGAAATTTCGAGA+AGG | 0.663292 | 8.1:-20440238 | MS.gene48279:CDS |
| AGTTGGGCAGAAGATGGACC+TGG | 0.674047 | 8.1:-20440499 | MS.gene48279:CDS |
| GACAGCTTGTTTGAAGAAGG+TGG | 0.675197 | 8.1:-20440312 | MS.gene48279:intron |
| GAGCATTCTTAGCATCAGGG+CGG | 0.753729 | 8.1:+20439376 | None:intergenic |
| GATGGAATCCAAGAACAATG+TGG | 0.760047 | 8.1:+20440212 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAAGAAAATTTATTTAATA+GGG | - | chr8.1:20439707-20439726 | MS.gene48279:CDS | 10.0% |
| !! | TTGAAGAAAATTTATTTAAT+AGG | - | chr8.1:20439706-20439725 | MS.gene48279:CDS | 10.0% |
| !! | TCAATAAATACATATCTTAA+TGG | - | chr8.1:20440655-20440674 | MS.gene48279:CDS | 15.0% |
| !! | TGAAAAACAAAAGAAAATTA+GGG | + | chr8.1:20439493-20439512 | None:intergenic | 15.0% |
| !! | TTATATAGTGAAGAAAATTA+GGG | + | chr8.1:20439469-20439488 | None:intergenic | 15.0% |
| !! | TTTATATAGTGAAGAAAATT+AGG | + | chr8.1:20439470-20439489 | None:intergenic | 15.0% |
| !!! | TATAATTTTCTGTTAAGAAT+GGG | - | chr8.1:20441699-20441718 | MS.gene48279:intron | 15.0% |
| !! | AAAATCCAAAATTCACAATT+GGG | + | chr8.1:20439669-20439688 | None:intergenic | 20.0% |
| !! | ATATATCCTAGAAAGATTAA+TGG | + | chr8.1:20441070-20441089 | None:intergenic | 20.0% |
| !! | ATTACATATATTTGTTTCCA+GGG | - | chr8.1:20442585-20442604 | MS.gene48279:intron | 20.0% |
| !! | CAATATGTAAAAATAAACTC+TGG | + | chr8.1:20440283-20440302 | None:intergenic | 20.0% |
| !! | GTGAAAAACAAAAGAAAATT+AGG | + | chr8.1:20439494-20439513 | None:intergenic | 20.0% |
| !! | TATATCCTAGAAAGATTAAT+GGG | + | chr8.1:20441069-20441088 | None:intergenic | 20.0% |
| !! | TTAACAGAAAATTATAGCAA+AGG | + | chr8.1:20441695-20441714 | None:intergenic | 20.0% |
| !! | TTGAATTGTACTAATGTATT+TGG | - | chr8.1:20439779-20439798 | MS.gene48279:intron | 20.0% |
| !!! | ACAACTTATTCATCATTTTT+AGG | + | chr8.1:20440533-20440552 | None:intergenic | 20.0% |
| !!! | CTATAATTTTCTGTTAAGAA+TGG | - | chr8.1:20441698-20441717 | MS.gene48279:intron | 20.0% |
| !!! | TAAAATATAAAGGTGTCATA+GGG | + | chr8.1:20441898-20441917 | None:intergenic | 20.0% |
| ! | AAAAAGTTCATAGGTAGTAA+AGG | + | chr8.1:20441875-20441894 | None:intergenic | 25.0% |
| ! | AAATCCAAAATTCACAATTG+GGG | + | chr8.1:20439668-20439687 | None:intergenic | 25.0% |
| ! | AATTACCCATTAATCTTTCT+AGG | - | chr8.1:20441061-20441080 | MS.gene48279:intron | 25.0% |
| ! | AGAAAAGATAAATGGTGTAA+AGG | + | chr8.1:20441999-20442018 | None:intergenic | 25.0% |
| ! | CAAAACGGTGTAAAATATAA+AGG | + | chr8.1:20441908-20441927 | None:intergenic | 25.0% |
| ! | CAAAATCCAAAATTCACAAT+TGG | + | chr8.1:20439670-20439689 | None:intergenic | 25.0% |
| ! | CATTACATATATTTGTTTCC+AGG | - | chr8.1:20442584-20442603 | MS.gene48279:intron | 25.0% |
| ! | CGGTTAAAAGAAAAGATAAA+TGG | + | chr8.1:20442007-20442026 | None:intergenic | 25.0% |
| ! | TAAAACAACCAAGAAAGAAA+AGG | - | chr8.1:20440631-20440650 | MS.gene48279:intron | 25.0% |
| ! | TATAGAACTAAGCTTATAGT+TGG | - | chr8.1:20440585-20440604 | MS.gene48279:intron | 25.0% |
| ! | TGATTAGATTACAATGTTGT+GGG | - | chr8.1:20442553-20442572 | MS.gene48279:intron | 25.0% |
| ! | TTGATTAGATTACAATGTTG+TGG | - | chr8.1:20442552-20442571 | MS.gene48279:intron | 25.0% |
| !! | AAATAATAGTTTGTATCTCG+AGG | + | chr8.1:20441254-20441273 | None:intergenic | 25.0% |
| !! | AATTCTAGAGATTCTTGAAT+AGG | + | chr8.1:20440046-20440065 | None:intergenic | 25.0% |
| !! | ATTCTAGAGATTCTTGAATA+GGG | + | chr8.1:20440045-20440064 | None:intergenic | 25.0% |
| !! | TCATATGAATGTCTCATTTT+AGG | - | chr8.1:20441313-20441332 | MS.gene48279:intron | 25.0% |
| !! | TCTGTTCTTAAATGTTTTAC+TGG | - | chr8.1:20439812-20439831 | MS.gene48279:intron | 25.0% |
| !! | TTATTGATCCTTTTCTTTCT+TGG | + | chr8.1:20440642-20440661 | None:intergenic | 25.0% |
| !!! | ACTATAAGCTTAGTTCTATA+TGG | + | chr8.1:20440585-20440604 | None:intergenic | 25.0% |
| !!! | ATTTTGAAATTCATTTCAGC+TGG | - | chr8.1:20442318-20442337 | MS.gene48279:intron | 25.0% |
| !!! | CAAAATCCTTATTTTTCATC+CGG | - | chr8.1:20441391-20441410 | MS.gene48279:intron | 25.0% |
| !!! | GTAAAATATAAAGGTGTCAT+AGG | + | chr8.1:20441899-20441918 | None:intergenic | 25.0% |
| !!! | TAGAAGTACCTTTTGTTTTA+AGG | + | chr8.1:20441959-20441978 | None:intergenic | 25.0% |
| !!! | TATTTTTACATATTGTGACC+TGG | - | chr8.1:20440288-20440307 | MS.gene48279:CDS | 25.0% |
| AAACGAAAAACCAAGTGATT+TGG | + | chr8.1:20442524-20442543 | None:intergenic | 30.0% | |
| AAATCGACATATGATCTGAA+TGG | + | chr8.1:20440134-20440153 | None:intergenic | 30.0% | |
| AACGAAAAACCAAGTGATTT+GGG | + | chr8.1:20442523-20442542 | None:intergenic | 30.0% | |
| AAGTACAAAACCTAGAATAC+TGG | - | chr8.1:20441162-20441181 | MS.gene48279:intron | 30.0% | |
| AGTACAAAACCTAGAATACT+GGG | - | chr8.1:20441163-20441182 | MS.gene48279:intron | 30.0% | |
| AGTATAATGAGTCTTTGTTG+GGG | - | chr8.1:20440176-20440195 | MS.gene48279:CDS | 30.0% | |
| CAGAGTTTCCTTAAAACAAA+AGG | - | chr8.1:20441948-20441967 | MS.gene48279:intron | 30.0% | |
| CTTGTAAGATTCCAAAAACT+GGG | + | chr8.1:20442427-20442446 | None:intergenic | 30.0% | |
| GAACATAGAAGCAAAAAGAT+AGG | + | chr8.1:20442285-20442304 | None:intergenic | 30.0% | |
| GAGTATAATGAGTCTTTGTT+GGG | - | chr8.1:20440175-20440194 | MS.gene48279:CDS | 30.0% | |
| GTGAAGAAAATTAGGGTTTA+CGG | + | chr8.1:20439462-20439481 | None:intergenic | 30.0% | |
| TCTTGTAAGATTCCAAAAAC+TGG | + | chr8.1:20442428-20442447 | None:intergenic | 30.0% | |
| TGAGTATAATGAGTCTTTGT+TGG | - | chr8.1:20440174-20440193 | MS.gene48279:CDS | 30.0% | |
| TGTAAGATTGATAAAGTTGC+AGG | - | chr8.1:20442643-20442662 | MS.gene48279:CDS | 30.0% | |
| TGTTATTATGCTGGTCAAAA+CGG | + | chr8.1:20441923-20441942 | None:intergenic | 30.0% | |
| TTTACATGATGCTACATCAT+TGG | + | chr8.1:20440683-20440702 | None:intergenic | 30.0% | |
| TTTGACCAGCATAATAACAT+TGG | - | chr8.1:20441924-20441943 | MS.gene48279:intron | 30.0% | |
| ! | ACTGTTTCTTTCCTTGATTA+TGG | + | chr8.1:20440478-20440497 | None:intergenic | 30.0% |
| ! | AGATGTTTTCAATTTCGTCA+AGG | - | chr8.1:20439409-20439428 | MS.gene48279:CDS | 30.0% |
| ! | ATCAAGGAAAGAAACAGTTT+TGG | - | chr8.1:20440480-20440499 | MS.gene48279:CDS | 30.0% |
| ! | CAAAACTTTCATTTTCACTC+TGG | - | chr8.1:20440819-20440838 | MS.gene48279:intron | 30.0% |
| ! | CAGAGTGAAAATGAAAGTTT+TGG | + | chr8.1:20440821-20440840 | None:intergenic | 30.0% |
| ! | CTTGTATTGACAACCATATA+AGG | + | chr8.1:20442149-20442168 | None:intergenic | 30.0% |
| ! | TAACTAGACTAATTTGCATC+AGG | - | chr8.1:20442057-20442076 | MS.gene48279:intron | 30.0% |
| ! | TCCACATCTTAAAGAGTTTT+TGG | - | chr8.1:20442120-20442139 | MS.gene48279:intron | 30.0% |
| ! | TTAACCCCAATTGTGAATTT+TGG | - | chr8.1:20439661-20439680 | MS.gene48279:CDS | 30.0% |
| ! | TTTTGGATTTTGAATGCACT+AGG | - | chr8.1:20439678-20439697 | MS.gene48279:CDS | 30.0% |
| !! | AAAGCATTGACAAAGCTAAA+AGG | - | chr8.1:20441635-20441654 | MS.gene48279:intron | 30.0% |
| !! | CTTAGTTCTATATGGATGTA+TGG | + | chr8.1:20440577-20440596 | None:intergenic | 30.0% |
| !! | TAGAATCACTTTTGAAGATG+TGG | + | chr8.1:20440975-20440994 | None:intergenic | 30.0% |
| !! | TCCAAAAACTCTTTAAGATG+TGG | + | chr8.1:20442124-20442143 | None:intergenic | 30.0% |
| !! | TGTCATTTATTCCCAGTTTT+TGG | - | chr8.1:20442413-20442432 | MS.gene48279:intron | 30.0% |
| !!! | TCTTTTGTTTTTCACAGACA+TGG | - | chr8.1:20439499-20439518 | MS.gene48279:intron | 30.0% |
| !!! | TTTAGCTTTGTCAATGCTTT+TGG | + | chr8.1:20441635-20441654 | None:intergenic | 30.0% |
| AAAAACCCCAGAATAAGCAA+GGG | + | chr8.1:20440317-20440336 | None:intergenic | 35.0% | |
| AAATAGCAAAGCAACGAAGA+GGG | + | chr8.1:20440935-20440954 | None:intergenic | 35.0% | |
| AACTTCAATCAAACTGCTAG+AGG | + | chr8.1:20440079-20440098 | None:intergenic | 35.0% | |
| AAGTCTTTCTTCTCAGCATT+TGG | - | chr8.1:20442166-20442185 | MS.gene48279:intron | 35.0% | |
| ACTTCAATCAAACTGCTAGA+GGG | + | chr8.1:20440078-20440097 | None:intergenic | 35.0% | |
| AGAACTAAGCTTATAGTTGG+AGG | - | chr8.1:20440588-20440607 | MS.gene48279:intron | 35.0% | |
| AGAATAGAAAATGCAAAGGC+TGG | - | chr8.1:20441186-20441205 | MS.gene48279:intron | 35.0% | |
| ATAGGTAGTAAAGGTTGAGA+TGG | + | chr8.1:20441866-20441885 | None:intergenic | 35.0% | |
| CATGGAAATCACCATAATCA+AGG | - | chr8.1:20440464-20440483 | MS.gene48279:CDS | 35.0% | |
| CTTGATTATGGTGATTTCCA+TGG | + | chr8.1:20440466-20440485 | None:intergenic | 35.0% | |
| GCAGTTTGATTGAAGTTGAA+CGG | - | chr8.1:20440082-20440101 | MS.gene48279:intron | 35.0% | |
| GCCAAGAAATAACAGAACAA+CGG | + | chr8.1:20442027-20442046 | None:intergenic | 35.0% | |
| GTATAATGAGTCTTTGTTGG+GGG | - | chr8.1:20440177-20440196 | MS.gene48279:CDS | 35.0% | |
| GTATTCTATACATTGCAGCT+TGG | - | chr8.1:20441580-20441599 | MS.gene48279:intron | 35.0% | |
| GTCATAGGGAAAAAGTTCAT+AGG | + | chr8.1:20441884-20441903 | None:intergenic | 35.0% | |
| TATATACCCAATGTCACCAA+TGG | - | chr8.1:20440386-20440405 | MS.gene48279:intron | 35.0% | |
| TATGAGCTATCGTTAGTACA+AGG | + | chr8.1:20441298-20441317 | None:intergenic | 35.0% | |
| TCCAAACATACTTCTTTAGC+AGG | + | chr8.1:20440004-20440023 | None:intergenic | 35.0% | |
| TCTGTCCAATGTTATTATGC+TGG | + | chr8.1:20441932-20441951 | None:intergenic | 35.0% | |
| TCTTCAAACAAGCTGTCATA+TGG | + | chr8.1:20441742-20441761 | None:intergenic | 35.0% | |
| TGATCTCTCTCATGTAATAC+CGG | + | chr8.1:20442389-20442408 | None:intergenic | 35.0% | |
| TGCAATTACTATGACACATC+TGG | + | chr8.1:20441213-20441232 | None:intergenic | 35.0% | |
| TGGGAGAATAGAAAATGCAA+AGG | - | chr8.1:20441182-20441201 | MS.gene48279:intron | 35.0% | |
| TTAATAATAACCGCAGAGAC+AGG | + | chr8.1:20441043-20441062 | None:intergenic | 35.0% | |
| TTAGATTACAATGTTGTGGG+AGG | - | chr8.1:20442556-20442575 | MS.gene48279:intron | 35.0% | |
| TTCAATTTCGTCAAGGAACA+TGG | - | chr8.1:20439416-20439435 | MS.gene48279:CDS | 35.0% | |
| TTCTATTCTCCCAGTATTCT+AGG | + | chr8.1:20441175-20441194 | None:intergenic | 35.0% | |
| ! | AATAGGCTGAAAGTGTATGA+AGG | - | chr8.1:20441784-20441803 | MS.gene48279:intron | 35.0% |
| ! | ATTTTCATCTGTCAGCTCAA+AGG | + | chr8.1:20440785-20440804 | None:intergenic | 35.0% |
| ! | TATGACAGCTTGTTTGAAGA+AGG | - | chr8.1:20441742-20441761 | MS.gene48279:intron | 35.0% |
| ! | TCCTGCTAAAGAAGTATGTT+TGG | - | chr8.1:20440000-20440019 | MS.gene48279:intron | 35.0% |
| !! | AAAGAGCATTCTTAGCATCA+GGG | + | chr8.1:20442687-20442706 | None:intergenic | 35.0% |
| !! | ACCGTTGTTCTGTTATTTCT+TGG | - | chr8.1:20442023-20442042 | MS.gene48279:intron | 35.0% |
| !! | ATCATCAATTTTAGCACGCA+TGG | + | chr8.1:20439588-20439607 | None:intergenic | 35.0% |
| !! | CTTATTTTTCATCCGGATTG+GGG | - | chr8.1:20441398-20441417 | MS.gene48279:intron | 35.0% |
| !! | CTTGAACATCTTGTTGTTTG+AGG | + | chr8.1:20439364-20439383 | None:intergenic | 35.0% |
| !! | GAGTTTTTGGACTCCTTATA+TGG | - | chr8.1:20442133-20442152 | MS.gene48279:intron | 35.0% |
| !! | TAAAGAGCATTCTTAGCATC+AGG | + | chr8.1:20442688-20442707 | None:intergenic | 35.0% |
| !! | TATCACGTTTTATTGCAGCT+GGG | - | chr8.1:20442611-20442630 | MS.gene48279:intron | 35.0% |
| !!! | CCTTATTTTTCATCCGGATT+GGG | - | chr8.1:20441397-20441416 | MS.gene48279:intron | 35.0% |
| !!! | TCCTTATTTTTCATCCGGAT+TGG | - | chr8.1:20441396-20441415 | MS.gene48279:intron | 35.0% |
| !!! | TGTTTTGAGGCTAGCTATTA+TGG | + | chr8.1:20440423-20440442 | None:intergenic | 35.0% |
| AAACCAAGACTGTTGCAGTT+GGG | - | chr8.1:20441542-20441561 | MS.gene48279:intron | 40.0% | |
| AAGGAGACTTCTTGTTGAAC+AGG | - | chr8.1:20442725-20442744 | MS.gene48279:CDS | 40.0% | |
| AATAAAACGTGATAGCTCCC+TGG | + | chr8.1:20442605-20442624 | None:intergenic | 40.0% | |
| ACATTGCAGCTTGGTTTCTT+TGG | - | chr8.1:20441589-20441608 | MS.gene48279:intron | 40.0% | |
| ATTCTTGAATAGGGAACACG+TGG | + | chr8.1:20440036-20440055 | None:intergenic | 40.0% | |
| CAAAACGGAATCAGCAACTA+GGG | + | chr8.1:20439540-20439559 | None:intergenic | 40.0% | |
| CAAATAGCAAAGCAACGAAG+AGG | + | chr8.1:20440936-20440955 | None:intergenic | 40.0% | |
| CAAGAAGTCTCCTTGCTTAA+TGG | + | chr8.1:20442719-20442738 | None:intergenic | 40.0% | |
| CAATGTCACCAATGGCTTAT+GGG | - | chr8.1:20440394-20440413 | MS.gene48279:intron | 40.0% | |
| CAGGCTAAATTTCATCCATC+AGG | + | chr8.1:20441024-20441043 | None:intergenic | 40.0% | |
| CCATCAGGAATTCTAAGTTC+AGG | + | chr8.1:20441009-20441028 | None:intergenic | 40.0% | |
| CCCAATCCGGATGAAAAATA+AGG | + | chr8.1:20441400-20441419 | None:intergenic | 40.0% | |
| CCTGAACTTAGAATTCCTGA+TGG | - | chr8.1:20441006-20441025 | MS.gene48279:intron | 40.0% | |
| CTTCAATCAAACTGCTAGAG+GGG | + | chr8.1:20440077-20440096 | None:intergenic | 40.0% | |
| GAAAAACCCCAGAATAAGCA+AGG | + | chr8.1:20440318-20440337 | None:intergenic | 40.0% | |
| GACACGATCCATATCCAAAA+CGG | + | chr8.1:20439555-20439574 | None:intergenic | 40.0% | |
| GATGGAATCCAAGAACAATG+TGG | + | chr8.1:20441848-20441867 | None:intergenic | 40.0% | |
| GCAACTAGGGTTTCGTATAA+AGG | + | chr8.1:20439527-20439546 | None:intergenic | 40.0% | |
| GCTGCAATGTATAGAATACC+AGG | + | chr8.1:20441579-20441598 | None:intergenic | 40.0% | |
| TACCAAGCAACCATTAAGCA+AGG | - | chr8.1:20442706-20442725 | MS.gene48279:CDS | 40.0% | |
| TCAATCACTGTCAAGATCTC+AGG | + | chr8.1:20442094-20442113 | None:intergenic | 40.0% | |
| TGAAATTTAGCCTGTCTCTG+CGG | - | chr8.1:20441030-20441049 | MS.gene48279:intron | 40.0% | |
| TGAATGCATCCCAAATCACT+TGG | - | chr8.1:20442511-20442530 | MS.gene48279:CDS | 40.0% | |
| TGTTATCTTGAGATGCTCCA+AGG | + | chr8.1:20441521-20441540 | None:intergenic | 40.0% | |
| TTCAATCAAACTGCTAGAGG+GGG | + | chr8.1:20440076-20440095 | None:intergenic | 40.0% | |
| TTTGAGGAGGAAAAGCTTGT+CGG | + | chr8.1:20439348-20439367 | None:intergenic | 40.0% | |
| ! | ACTCTCACCTAAGTTTTCCT+CGG | + | chr8.1:20441349-20441368 | None:intergenic | 40.0% |
| ! | CAAAGGCTGGTGATTTTTCA+GGG | + | chr8.1:20440768-20440787 | None:intergenic | 40.0% |
| ! | CATAAGCCATTGGTGACATT+GGG | + | chr8.1:20440395-20440414 | None:intergenic | 40.0% |
| ! | GACTAATTTGCATCAGGTAG+TGG | - | chr8.1:20442063-20442082 | MS.gene48279:intron | 40.0% |
| ! | TCAAAGGCTGGTGATTTTTC+AGG | + | chr8.1:20440769-20440788 | None:intergenic | 40.0% |
| ! | TTTGAGGCTAGCTATTATGG+TGG | + | chr8.1:20440420-20440439 | None:intergenic | 40.0% |
| !! | AAAAGCGTTTGGAGTATCTG+TGG | - | chr8.1:20442470-20442489 | MS.gene48279:CDS | 40.0% |
| !! | CTATCACGTTTTATTGCAGC+TGG | - | chr8.1:20442610-20442629 | MS.gene48279:intron | 40.0% |
| !! | CTCTTCGTTGCTTTGCTATT+TGG | - | chr8.1:20440934-20440953 | MS.gene48279:intron | 40.0% |
| !! | GAACATCTTGTTGTTTGAGG+AGG | + | chr8.1:20439361-20439380 | None:intergenic | 40.0% |
| !!! | TGCTGATTCCGTTTTGGATA+TGG | - | chr8.1:20439544-20439563 | MS.gene48279:intron | 40.0% |
| ACTGTAGGACATCTTCAGTC+TGG | + | chr8.1:20440909-20440928 | None:intergenic | 45.0% | |
| ACTTGATTCCAGCAGCAGAA+AGG | + | chr8.1:20441468-20441487 | None:intergenic | 45.0% | |
| CACTCGAAATTTCGAGAAGG+CGG | - | chr8.1:20441822-20441841 | MS.gene48279:intron | 45.0% | |
| CATGGCATCTACCATTCACT+GGG | + | chr8.1:20440448-20440467 | None:intergenic | 45.0% | |
| CCAAAACGGAATCAGCAACT+AGG | + | chr8.1:20439541-20439560 | None:intergenic | 45.0% | |
| CCAATGTCACCAATGGCTTA+TGG | - | chr8.1:20440393-20440412 | MS.gene48279:intron | 45.0% | |
| CCTGACGGAGCAAATTAAGT+TGG | - | chr8.1:20442341-20442360 | MS.gene48279:intron | 45.0% | |
| CTCAAAACATGCCCAGTGAA+TGG | - | chr8.1:20440434-20440453 | MS.gene48279:CDS | 45.0% | |
| CTCATGTAATACCGGAAGTG+TGG | + | chr8.1:20442381-20442400 | None:intergenic | 45.0% | |
| CTCCTTGCTTAATGGTTGCT+TGG | + | chr8.1:20442711-20442730 | None:intergenic | 45.0% | |
| GAAACCAAGACTGTTGCAGT+TGG | - | chr8.1:20441541-20441560 | MS.gene48279:intron | 45.0% | |
| GAGTGTGACAATTGAAGCCA+TGG | - | chr8.1:20442446-20442465 | MS.gene48279:intron | 45.0% | |
| GCTATTTGCATCCACACTTC+CGG | - | chr8.1:20442367-20442386 | MS.gene48279:intron | 45.0% | |
| GTCCACTCGAAATTTCGAGA+AGG | - | chr8.1:20441819-20441838 | MS.gene48279:intron | 45.0% | |
| GTGACTGGGAAAGGAAGAAT+AGG | - | chr8.1:20441767-20441786 | MS.gene48279:intron | 45.0% | |
| GTTTGAAGAAGGTGGTGACT+GGG | - | chr8.1:20441753-20441772 | MS.gene48279:intron | 45.0% | |
| TACATACCTTGTCCCCAATC+CGG | + | chr8.1:20441413-20441432 | None:intergenic | 45.0% | |
| TGGTCACCCTTGCTTATTCT+GGG | - | chr8.1:20440308-20440327 | MS.gene48279:CDS | 45.0% | |
| TGTTTGAAGAAGGTGGTGAC+TGG | - | chr8.1:20441752-20441771 | MS.gene48279:intron | 45.0% | |
| TTCCAGCAGCAGAAAGGAAA+AGG | + | chr8.1:20441462-20441481 | None:intergenic | 45.0% | |
| ! | AGTGAGGTGGACATTGACTA+TGG | + | chr8.1:20440864-20440883 | None:intergenic | 45.0% |
| ! | ATTCATTTCAGCTGGCCTGA+CGG | - | chr8.1:20442326-20442345 | MS.gene48279:intron | 45.0% |
| ! | CATTCACTGGGCATGTTTTG+AGG | + | chr8.1:20440436-20440455 | None:intergenic | 45.0% |
| ! | CATTTTCACTCTGGCAGAGA+AGG | - | chr8.1:20440828-20440847 | MS.gene48279:intron | 45.0% |
| ! | CCATAAGCCATTGGTGACAT+TGG | + | chr8.1:20440396-20440415 | None:intergenic | 45.0% |
| ! | GACAGCTTGTTTGAAGAAGG+TGG | - | chr8.1:20441745-20441764 | MS.gene48279:intron | 45.0% |
| ! | GGAAGTGTGGATGCAAATAG+CGG | + | chr8.1:20442368-20442387 | None:intergenic | 45.0% |
| ! | GGATATGGATCGTGTCCTTT+TGG | - | chr8.1:20439559-20439578 | MS.gene48279:intron | 45.0% |
| ! | TACTCCAAACGCTTTTGCCA+TGG | + | chr8.1:20442466-20442485 | None:intergenic | 45.0% |
| ! | TTCCTTTTCCTTTCTGCTGC+TGG | - | chr8.1:20441457-20441476 | MS.gene48279:intron | 45.0% |
| !! | CCAACTTAATTTGCTCCGTC+AGG | + | chr8.1:20442344-20442363 | None:intergenic | 45.0% |
| !!! | CCTAGTTGCTGATTCCGTTT+TGG | - | chr8.1:20439538-20439557 | MS.gene48279:intron | 45.0% |
| !!! | GGTGATTTTTCAGGGCACAA+CGG | + | chr8.1:20440760-20440779 | None:intergenic | 45.0% |
| !!! | TTTTAGGATTGCTGATGCCG+AGG | - | chr8.1:20441329-20441348 | MS.gene48279:intron | 45.0% |
| AACACTGTCCTCTATGCACC+AGG | - | chr8.1:20441489-20441508 | MS.gene48279:intron | 50.0% | |
| AAGAAGGTGGTGACTGGGAA+AGG | - | chr8.1:20441758-20441777 | MS.gene48279:intron | 50.0% | |
| AATGTCCACCTCACTTGAGG+AGG | - | chr8.1:20440869-20440888 | MS.gene48279:intron | 50.0% | |
| AGGGTTTACGGAGAGAGAAG+AGG | + | chr8.1:20439450-20439469 | None:intergenic | 50.0% | |
| AGGTGAGAGTGAAGTTCGTG+AGG | - | chr8.1:20441359-20441378 | MS.gene48279:intron | 50.0% | |
| CAACGAAGAGGGTTCACTGT+AGG | + | chr8.1:20440924-20440943 | None:intergenic | 50.0% | |
| CAGAATAAGCAAGGGTGACC+AGG | + | chr8.1:20440309-20440328 | None:intergenic | 50.0% | |
| CCAGTGAATGGTAGATGCCA+TGG | - | chr8.1:20440446-20440465 | MS.gene48279:CDS | 50.0% | |
| CCATGGCATCTACCATTCAC+TGG | + | chr8.1:20440449-20440468 | None:intergenic | 50.0% | |
| CGATCACACGAGACAGTTTC+TGG | + | chr8.1:20442753-20442772 | None:intergenic | 50.0% | |
| CGCCTTCTCGAAATTTCGAG+TGG | + | chr8.1:20441824-20441843 | None:intergenic | 50.0% | |
| CTGGTCACCCTTGCTTATTC+TGG | - | chr8.1:20440307-20440326 | MS.gene48279:CDS | 50.0% | |
| GAGCATTCTTAGCATCAGGG+CGG | + | chr8.1:20442684-20442703 | None:intergenic | 50.0% | |
| GCAGCTTGGTTTCTTTGGCA+TGG | - | chr8.1:20441594-20441613 | MS.gene48279:intron | 50.0% | |
| GCTGATGCCGAGGAAAACTT+AGG | - | chr8.1:20441339-20441358 | MS.gene48279:intron | 50.0% | |
| GGGTTTACGGAGAGAGAAGA+GGG | + | chr8.1:20439449-20439468 | None:intergenic | 50.0% | |
| GGTCACCCTTGCTTATTCTG+GGG | - | chr8.1:20440309-20440328 | MS.gene48279:CDS | 50.0% | |
| GTCAATGTCCACCTCACTTG+AGG | - | chr8.1:20440866-20440885 | MS.gene48279:intron | 50.0% | |
| TAGCACGCATGGAGTCCAAA+AGG | + | chr8.1:20439577-20439596 | None:intergenic | 50.0% | |
| TATGCACCAGGAGAAAGCCT+TGG | - | chr8.1:20441501-20441520 | MS.gene48279:intron | 50.0% | |
| TATGGTGGCCCATAAGCCAT+TGG | + | chr8.1:20440405-20440424 | None:intergenic | 50.0% | |
| TCATCTGTCAGCTCAAAGGC+TGG | + | chr8.1:20440781-20440800 | None:intergenic | 50.0% | |
| TGAAGTTCGTGAGGCTCACT+TGG | - | chr8.1:20441368-20441387 | MS.gene48279:intron | 50.0% | |
| TGTTGCAGTTGGGCAGAAGA+TGG | - | chr8.1:20441552-20441571 | MS.gene48279:intron | 50.0% | |
| TTCGAGTGGACATGCAGTAG+AGG | + | chr8.1:20441810-20441829 | None:intergenic | 50.0% | |
| ! | TTTCATCCGGATTGGGGACA+AGG | - | chr8.1:20441404-20441423 | MS.gene48279:intron | 50.0% |
| !! | GAAGCCATGGCAAAAGCGTT+TGG | - | chr8.1:20442459-20442478 | MS.gene48279:CDS | 50.0% |
| AGTTGGGCAGAAGATGGACC+TGG | - | chr8.1:20441558-20441577 | MS.gene48279:intron | 55.0% | |
| CATTGCAGCCTCCTCAAGTG+AGG | + | chr8.1:20440880-20440899 | None:intergenic | 55.0% | |
| CTGCCCAACTGCAACAGTCT+TGG | + | chr8.1:20441548-20441567 | None:intergenic | 55.0% | |
| GAAGGCGGCCACATTGTTCT+TGG | - | chr8.1:20441837-20441856 | MS.gene48279:intron | 55.0% | |
| GATGCTCCAAGGCTTTCTCC+TGG | + | chr8.1:20441510-20441529 | None:intergenic | 55.0% | |
| GGCTTTCTCCTGGTGCATAG+AGG | + | chr8.1:20441500-20441519 | None:intergenic | 55.0% | |
| TTGTCGGCGAGGACAAGTTG+TGG | + | chr8.1:20439332-20439351 | None:intergenic | 55.0% | |
| GGAGGAAAAGCTTGTCGGCG+AGG | + | chr8.1:20439343-20439362 | None:intergenic | 60.0% | |
| TGCAGCCTCCTCAAGTGAGG+TGG | + | chr8.1:20440877-20440896 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 20439299 | 20442780 | 20439299 | ID=MS.gene48279 |
| chr8.1 | mRNA | 20439299 | 20442780 | 20439299 | ID=MS.gene48279.t1;Parent=MS.gene48279 |
| chr8.1 | exon | 20442642 | 20442780 | 20442642 | ID=MS.gene48279.t1.exon1;Parent=MS.gene48279.t1 |
| chr8.1 | CDS | 20442642 | 20442780 | 20442642 | ID=cds.MS.gene48279.t1;Parent=MS.gene48279.t1 |
| chr8.1 | exon | 20442449 | 20442563 | 20442449 | ID=MS.gene48279.t1.exon2;Parent=MS.gene48279.t1 |
| chr8.1 | CDS | 20442449 | 20442563 | 20442449 | ID=cds.MS.gene48279.t1;Parent=MS.gene48279.t1 |
| chr8.1 | exon | 20440654 | 20440744 | 20440654 | ID=MS.gene48279.t1.exon3;Parent=MS.gene48279.t1 |
| chr8.1 | CDS | 20440654 | 20440744 | 20440654 | ID=cds.MS.gene48279.t1;Parent=MS.gene48279.t1 |
| chr8.1 | exon | 20440423 | 20440568 | 20440423 | ID=MS.gene48279.t1.exon4;Parent=MS.gene48279.t1 |
| chr8.1 | CDS | 20440423 | 20440568 | 20440423 | ID=cds.MS.gene48279.t1;Parent=MS.gene48279.t1 |
| chr8.1 | exon | 20440110 | 20440329 | 20440110 | ID=MS.gene48279.t1.exon5;Parent=MS.gene48279.t1 |
| chr8.1 | CDS | 20440110 | 20440329 | 20440110 | ID=cds.MS.gene48279.t1;Parent=MS.gene48279.t1 |
| chr8.1 | exon | 20439892 | 20440000 | 20439892 | ID=MS.gene48279.t1.exon6;Parent=MS.gene48279.t1 |
| chr8.1 | CDS | 20439892 | 20440000 | 20439892 | ID=cds.MS.gene48279.t1;Parent=MS.gene48279.t1 |
| chr8.1 | exon | 20439574 | 20439742 | 20439574 | ID=MS.gene48279.t1.exon7;Parent=MS.gene48279.t1 |
| chr8.1 | CDS | 20439574 | 20439742 | 20439574 | ID=cds.MS.gene48279.t1;Parent=MS.gene48279.t1 |
| chr8.1 | exon | 20439299 | 20439473 | 20439299 | ID=MS.gene48279.t1.exon8;Parent=MS.gene48279.t1 |
| chr8.1 | CDS | 20439299 | 20439473 | 20439299 | ID=cds.MS.gene48279.t1;Parent=MS.gene48279.t1 |
| Gene Sequence |
| Protein sequence |
