AlfalfaGEDB | MS.gene84968

M. sativa cultivar XinJiangDaYe / MS.gene84968

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0046983 GO:0097159 GO:1901363
PFAM: PF02892.18 PF05699.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84968.t1	XP_029145237.1	51.2	694	202	9	78	637	69	759	4.30E-186	661.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84968.t1	P08770	29.3	675	320	20	107	644	134	788	2.7e-59	231.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84968.t1	A0A445D5G4	50.3	656	191	7	103	628	62	712	2.9e-176	628.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049262	MS.gene84968	0.821423	4.07E-53	-1.69E-46
MS.gene049587	MS.gene84968	0.803218	3.87E-49	-1.69E-46
MS.gene049701	MS.gene84968	0.824377	8.34E-54	-1.69E-46
MS.gene049853	MS.gene84968	0.826855	2.16E-54	-1.69E-46
MS.gene050611	MS.gene84968	0.806264	8.95E-50	-1.69E-46
MS.gene051710	MS.gene84968	0.808218	3.45E-50	-1.69E-46
MS.gene053512	MS.gene84968	0.812496	4.12E-51	-1.69E-46
MS.gene053974	MS.gene84968	0.80716	5.79E-50	-1.69E-46
MS.gene05404	MS.gene84968	0.800193	1.62E-48	-1.69E-46
MS.gene054174	MS.gene84968	0.830381	3.03E-55	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84968.t1	MTR_6g027800	76.667	90	16	1	176	260	11	100	1.53e-40	144
MS.gene84968.t1	MTR_4g107900	71.579	95	22	1	172	261	86	180	1.35e-39	144
MS.gene84968.t1	MTR_4g107900	57.143	98	31	2	23	109	22	119	4.66e-22	94.4
MS.gene84968.t1	MTR_7g106390	71.579	95	22	1	172	261	86	180	1.49e-39	143
MS.gene84968.t1	MTR_7g106390	57.143	98	31	2	23	109	22	119	4.80e-22	94.4
MS.gene84968.t1	MTR_5g023055	70.130	77	18	1	172	243	32	108	1.17e-28	110
MS.gene84968.t1	MTR_4g120840	42.553	94	54	0	192	285	13	106	2.78e-19	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84968.t1	AT3G42170	24.038	624	335	18	108	604	62	673	2.98e-43	166
MS.gene84968.t1	AT3G42170	23.994	621	333	18	111	604	43	651	4.64e-43	165

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Find 114 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCTTGGAGACATGGC+TGG	0.534940	1.3:-36635605	MS.gene84968:CDS
AAAGAAGATGGGAATGGAAC+TGG	0.465979	1.3:-36636621	MS.gene84968:CDS
AACACTGCCATCGAGTATGG+AGG	0.627859	1.3:-36636982	MS.gene84968:CDS
AACATATGATGCAATTGGAG+CGG	0.594958	1.3:+36634980	None:intergenic
AAGGGGAATACTTACATGTC+AGG	0.489242	1.3:-36636089	MS.gene84968:intron
AATGATGTGAACGTTGGTGA+AGG	0.617934	1.3:-36636954	MS.gene84968:CDS
ACAATTTAACACTCTACCTC+CGG	0.552366	1.3:+36635067	None:intergenic
ACACTGCCATCGAGTATGGA+GGG	0.608762	1.3:-36636981	MS.gene84968:CDS
ACTAATGAGAGTAGAATAGT+TGG	0.445528	1.3:-36637035	MS.gene84968:CDS
ACTAATGCTTCAACTGTCTT+TGG	0.305231	1.3:+36635026	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAATGAGAGTAGAATAGT+TGG	-	chr1.3:36635713-36635732	MS.gene84968:CDS	30.0%
ATCTTCTAATGATATGGAAG+TGG	-	chr1.3:36637403-36637422	MS.gene84968:intron	30.0%
ATTTACATTGATCGAGCAAA+TGG	+	chr1.3:36636048-36636067	None:intergenic	30.0%
CACATTTCATTGATCAAGAT+TGG	-	chr1.3:36636437-36636456	MS.gene84968:CDS	30.0%
CTAATGAGAGTAGAATAGTT+GGG	-	chr1.3:36635714-36635733	MS.gene84968:CDS	30.0%
CTTCTTGATATATGTTGAAG+TGG	-	chr1.3:36637217-36637236	MS.gene84968:intron	30.0%
GAAAATTGACAAATGTTTGG+AGG	-	chr1.3:36636525-36636544	MS.gene84968:CDS	30.0%
GATAAGAAGAAAAGGAAAGT+TGG	-	chr1.3:36635824-36635843	MS.gene84968:CDS	30.0%
GATATTACTAACAAGGTTTC+TGG	-	chr1.3:36637035-36637054	MS.gene84968:CDS	30.0%
GTGACTATTTGTTCAATATG+TGG	-	chr1.3:36635337-36635356	MS.gene84968:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	36634768	36638002	36634768	ID=MS.gene84968
chr1.3	mRNA	36634768	36638002	36634768	ID=MS.gene84968.t1;Parent=MS.gene84968
chr1.3	exon	36637889	36638002	36637889	ID=MS.gene84968.t1.exon1;Parent=MS.gene84968.t1
chr1.3	CDS	36637889	36638002	36637889	ID=cds.MS.gene84968.t1;Parent=MS.gene84968.t1
chr1.3	exon	36636090	36637072	36636090	ID=MS.gene84968.t1.exon2;Parent=MS.gene84968.t1
chr1.3	CDS	36636090	36637072	36636090	ID=cds.MS.gene84968.t1;Parent=MS.gene84968.t1
chr1.3	exon	36635594	36635970	36635594	ID=MS.gene84968.t1.exon3;Parent=MS.gene84968.t1
chr1.3	CDS	36635594	36635970	36635594	ID=cds.MS.gene84968.t1;Parent=MS.gene84968.t1
chr1.3	exon	36634943	36635347	36634943	ID=MS.gene84968.t1.exon4;Parent=MS.gene84968.t1
chr1.3	CDS	36634943	36635347	36634943	ID=cds.MS.gene84968.t1;Parent=MS.gene84968.t1
chr1.3	exon	36634768	36634823	36634768	ID=MS.gene84968.t1.exon5;Parent=MS.gene84968.t1
chr1.3	CDS	36634768	36634823	36634768	ID=cds.MS.gene84968.t1;Parent=MS.gene84968.t1

Gene Sequence

>MS.gene84968

ATGCGTTGCCCACCTCCGATATCGGTACCACCACCGCCGATTCCGTCATCCTCTCCGGAAAGCATCACCAACAATCCTCTCATCGGATCCGACTCTCTCTCTATGGGTCATCAGGTAACATTTTCGTGTATACCCACTACTACTCTGACACCCGTTTGCTTCTCTTCAATCGTTGAATCAAATAAATTATAAAGAATGGAATTTTTGGTGTGAATGCAAAATACTTAAAGTTCAAAGATCTAATATAGAAAGAATGGGTTTGTTTGTAGGTTGTGCTTGTGCAAATTATAATTCAATCCATCATGTTTTCAAGTTTGTGGATGCACCAAAAAAAAATCTTAAAATAACGAAACATAATCAATAGGAATTAAGAATTATGAATCAATAAAGAAACACTATATAAGAATAAAACTAATGAGTACTTTTTTCGTGTTCAATGTTTCGTGTAGTACTTTTTTATTTTTATATAATCGTAAAGAATTATGAATCGTAAAGAATTAGGAATTAAGAATTATGAATCAATAAAGAAACACTATATAAGAAACACTATATAAGAATAGTTAATGCATGTGACTATTTGTTCAATATGTGGCAGAGTTAACAGAATCCCTTAGGTATATTAGTGATCGGTCTTTGATTTATTCTTTCAAAAAAAACTTATGAAGAAGACTTATTAATATATAGTTGTTAGTTCTTTGGTTGTTGAACTCATTATGATATGCATGGACATATGGATTAAAACTGTGTGTTATGGAAGAGCTTTCTTTTGATTTTTTGTATCACTTACTTCTTTGGTATAACTTCTTCGTGTATAAAAAATGTTGTTTGGTAATGACAATTGTTGATTGTATTTTTTTCATATAAGAATGAATATTTGGAATTTGCTTTGTCATAGAATTATTTGTTGAGTCGTATATGGATATTTTGCAGGCTGAAAACATTCAAACTAATGAGAGTAGAATAGTTGGGAATGTTACTGCTGAACCTGAACTACTTACAACACTGCCATCGAGTATGGAGGGGAAAAATGATGTGAACGTTGGTGAAGGTTCCAATGATAAGAAGAAAAGGAAAGTTGGGGAAAATTCAACAAATGCAACTATCAAGGGTCCTGATACTGGAGATTCAGGTACTAGAAAAGCTTGTAAAAATAGTTCTTGGGTCTGGAAACATTTTACAAAAGATGATCATCCAACTAATCCTAGAGCTATGTGTAATTGGTGTGCGGCTACCTATGCTGCTGATTCACATAAAAATGGCACAACCAATCTAAGAATCCATTTGCTCGATCAATGTAAATTTTTTCCAAAAGAGTCTCTTGATCCTTCTCAACAAATAGTAACTCTTCATAAATTGAAAAAAGAAGATGGGAATGGAACTGGTAGTACTCTTGCTGCTGAAGCATGTAGGCAAGCATTAGCTAGAATGATAATTGTTGATGAGTTACCTTTTAAGTTTGTTGAGGGGGAGGGGTTTCGCTATTTCATGAGTGTTGTGCAGCCTAGATTCTCAATTCCTTCTAGGATTTCAGCTGCTAGAGATTGTTGGAATATTTTCACTGATGAGAAACATAAGTTAAAAAGTATTTTTAGGAGGGGATTACAAAGTGTTAGTCTCACCACTAATTGTTGGACTTCTGTCCAAAATTTGAGTTATCTTTGTCTAACTGCACATTTCATTGATCAAGATTGGAAGTTGCACAAAAGAATTCTTAATTTTTGTCCAATCATGGATCATAGAGGAGTGACAATTGGTAGGAAAATTGACAAATGTTTGGAGGAGTGGCAGATTGATAAAGTTTTTACCATTACAGTCGATAATGCTAGTTCCAATGATGTTGCTATTGCTTACTTGAATGGAAAAATGGAGGACTGGAATTCACATCCACTAAAAGGGGAATACTTACATGTCAGGTGTTATGCTCACATTTGAATCTTGTTGTCAAAGACGGATTAACAAAAATACAGTCTTCAATTAGCAAAATTAGTAATGCAGTCAGATATGTTCGTCAATCTCCCGGTCGCATGGATAGGTTTAGAACTTACATTAGGGAAGCTAGAGTGCAAGAAAAGTGTATTGTGCAGTTGAATGTCTCAACAAGGTGGAACTCTACTTACTTGATGCTTGACAGTGCAATTAAGTTTCAGAAGGCTTTTAAGAGATTGAGTGAAAAGTGTGCTGAATTTTCGCGTATGGAAGGTGGGGTTCCAAAAAATGAGGATTGGGAGAATGCAAAATCCTTTGTTAAATTCCTGAAAATATTTTATGATATTACTAACAAGGTTTCTGGTTCAAATGTTGTAACTTCTTCTCAGTATTTCAATGAGCATGTTCTGATATTGACTACCTTTAAGAAATGGATAGGGAGTTCTGACAAACATCTTGGAGACATGGCTGGAATGATGAAAGGTAAGTATGATAAATATTGGGGGAATGTTAAAAATGTCAACTTCTTGATATATGTTGAAGTGGTGCTTGATCCTAGAAACAAGATGCAATTTGTTAAGTGGGGCATGAATAAATGTTATTAAAAGGAACTTGCTAATTTTTTGTCTGATAAGGTAAAGGAGACTTTACAAGATATGTTTGATAGATATAAGCTTTGTATTCAAAGTCAATCTGAAAATCAAACTCAATCTTCTAATGATATGGAAGTGGAAGAACTTGATGTTTTGGAAAATGCATTGGATTTGGAATTTGAGAAAGATATGAGTCTTGCTGATAATATGAATGTAAATGAAGTGGATTTGTATCTCATGGAGGGTTTAGAGAAGAAAATTCATAATTTTGACATATTGAATTGGTGGAAGGTGAATTCCACCAAATATTCCACCAAATATCCTATTCTTGCCCAAGTTGCTCGAGATGGGTTGGCCATTGTTTCTACAGTTGCTTCAGAGTCAGCTTTTAGCACCGGAGGTAGAGTGTTAAATTGTTACAGGAGCTCTCTTACACCAAAGACAGTTGAAGCATTAGTTTGTGCCCAAAATTGGTGTCAATCCGCTCCAATTGCATCATATGTTGAAGATCTTTTGGAGGACTTGGAACAACTGGAACTAGGTAATTTTCTCTTTCTTATTGTTGAATTTCTTATGGTCTGAAGTTTATTATAGTTGTTTATTTTTTCTTTGTTTCTCATGAATATAGATTTATGTATTTTTGTATTTTGTACATTTTAGATCTTGCTCCAATACCACAACTGACTGAAGAGATGTCTGATATTGACTCTGATTAA

Protein sequence

>MS.gene84968.t1

MRCPPPISVPPPPIPSSSPESITNNPLIGSDSLSMGHQAENIQTNESRIVGNVTAEPELLTTLPSSMEGKNDVNVGEGSNDKKKRKVGENSTNATIKGPDTGDSGTRKACKNSSWVWKHFTKDDHPTNPRAMCNWCAATYAADSHKNGTTNLRIHLLDQCKFFPKESLDPSQQIVTLHKLKKEDGNGTGSTLAAEACRQALARMIIVDELPFKFVEGEGFRYFMSVVQPRFSIPSRISAARDCWNIFTDEKHKLKSIFRRGLQSVSLTTNCWTSVQNLSYLCLTAHFIDQDWKLHKRILNFCPIMDHRGVTIGRKIDKCLEEWQIDKVFTITVDNASSNDVAIAYLNGKMEDWNSHPLKGEYLHVRFRTYIREARVQEKCIVQLNVSTRWNSTYLMLDSAIKFQKAFKRLSEKCAEFSRMEGGVPKNEDWENAKSFVKFLKIFYDITNKVSGSNVVTSSQYFNEHVLILTTFKKWIGSSDKHLGDMAGMMKVEELDVLENALDLEFEKDMSLADNMNVNEVDLYLMEGLEKKIHNFDILNWWKVNSTKYSTKYPILAQVARDGLAIVSTVASESAFSTGGRVLNCYRSSLTPKTVEALVCAQNWCQSAPIASYVEDLLEDLEQLELDLAPIPQLTEEMSDIDSD