Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98673.t1 | PNY07678.1 | 51.4 | 350 | 93 | 3 | 35 | 307 | 2 | 351 | 1.30E-84 | 323.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98673.t1 | A0A2K3NXB6 | 51.4 | 350 | 93 | 3 | 35 | 307 | 2 | 351 | 9.6e-85 | 323.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene98673 | 0.816499 | 5.36E-52 | -1.69E-46 |
| MS.gene049587 | MS.gene98673 | 0.800436 | 1.44E-48 | -1.69E-46 |
| MS.gene049853 | MS.gene98673 | 0.890481 | 9.47E-74 | -1.69E-46 |
| MS.gene052447 | MS.gene98673 | 0.841847 | 3.71E-58 | -1.69E-46 |
| MS.gene05329 | MS.gene98673 | 0.823067 | 1.69E-53 | -1.69E-46 |
| MS.gene05404 | MS.gene98673 | 0.81504 | 1.13E-51 | -1.69E-46 |
| MS.gene054174 | MS.gene98673 | 0.868615 | 5.72E-66 | -1.69E-46 |
| MS.gene054175 | MS.gene98673 | 0.873889 | 1.04E-67 | -1.69E-46 |
| MS.gene054484 | MS.gene98673 | 0.844579 | 6.93E-59 | -1.69E-46 |
| MS.gene055017 | MS.gene98673 | 0.821982 | 3.02E-53 | -1.69E-46 |
| MS.gene055056 | MS.gene98673 | 0.807914 | 4.01E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene98673 | 0.814049 | 1.88E-51 | -1.69E-46 |
| MS.gene055952 | MS.gene98673 | 0.839062 | 1.98E-57 | -1.69E-46 |
| MS.gene058515 | MS.gene98673 | 0.816921 | 4.31E-52 | -1.69E-46 |
| MS.gene058580 | MS.gene98673 | 0.819555 | 1.09E-52 | -1.69E-46 |
| MS.gene059276 | MS.gene98673 | 0.837804 | 4.19E-57 | -1.69E-46 |
| MS.gene059458 | MS.gene98673 | 0.821022 | 5.03E-53 | -1.69E-46 |
| MS.gene059460 | MS.gene98673 | 0.802562 | 5.29E-49 | -1.69E-46 |
| MS.gene060610 | MS.gene98673 | 0.802227 | 6.20E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98673.t1 | MTR_7g070100 | 46.064 | 343 | 107 | 4 | 42 | 307 | 9 | 350 | 4.16e-86 | 262 |
| MS.gene98673.t1 | MTR_3g006100 | 41.834 | 349 | 123 | 6 | 36 | 305 | 3 | 350 | 3.61e-80 | 247 |
| MS.gene98673.t1 | MTR_3g006010 | 42.192 | 365 | 129 | 7 | 21 | 304 | 103 | 466 | 2.30e-79 | 249 |
| MS.gene98673.t1 | MTR_4g133490 | 42.609 | 345 | 112 | 8 | 42 | 305 | 7 | 346 | 1.67e-78 | 243 |
| MS.gene98673.t1 | MTR_3g006120 | 41.954 | 348 | 122 | 6 | 36 | 304 | 3 | 349 | 8.19e-78 | 241 |
| MS.gene98673.t1 | MTR_3g006140 | 39.888 | 356 | 134 | 6 | 30 | 306 | 19 | 373 | 1.94e-75 | 236 |
| MS.gene98673.t1 | MTR_3g006180 | 42.478 | 339 | 115 | 6 | 47 | 306 | 1 | 338 | 8.01e-75 | 233 |
| MS.gene98673.t1 | MTR_4g133320 | 45.196 | 281 | 103 | 7 | 71 | 305 | 31 | 306 | 6.14e-70 | 219 |
| MS.gene98673.t1 | MTR_1g100280 | 42.012 | 338 | 126 | 10 | 32 | 307 | 8 | 337 | 8.27e-69 | 218 |
| MS.gene98673.t1 | MTR_1g109340 | 41.718 | 326 | 166 | 7 | 1 | 306 | 33 | 354 | 2.28e-67 | 214 |
| MS.gene98673.t1 | MTR_3g045700 | 39.888 | 356 | 124 | 8 | 35 | 307 | 2 | 350 | 6.19e-67 | 213 |
| MS.gene98673.t1 | MTR_7g083950 | 39.237 | 367 | 130 | 11 | 24 | 307 | 76 | 432 | 2.44e-64 | 209 |
| MS.gene98673.t1 | MTR_6g091830 | 36.712 | 365 | 142 | 7 | 29 | 307 | 94 | 455 | 2.39e-58 | 194 |
| MS.gene98673.t1 | MTR_3g068220 | 37.255 | 357 | 135 | 8 | 35 | 305 | 2 | 355 | 4.02e-58 | 191 |
| MS.gene98673.t1 | MTR_6g092140 | 36.438 | 365 | 143 | 7 | 29 | 307 | 94 | 455 | 2.54e-57 | 191 |
| MS.gene98673.t1 | MTR_6g011110 | 45.045 | 222 | 103 | 7 | 99 | 307 | 62 | 277 | 2.13e-48 | 163 |
| MS.gene98673.t1 | MTR_6g088340 | 37.931 | 290 | 125 | 6 | 70 | 307 | 147 | 433 | 5.45e-48 | 166 |
| MS.gene98673.t1 | MTR_3g086480 | 44.608 | 204 | 103 | 6 | 99 | 298 | 55 | 252 | 1.90e-43 | 149 |
| MS.gene98673.t1 | MTR_1g109520 | 46.835 | 158 | 79 | 3 | 154 | 306 | 19 | 176 | 8.31e-36 | 127 |
| MS.gene98673.t1 | MTR_1g089620 | 50.360 | 139 | 56 | 3 | 135 | 272 | 34 | 160 | 6.38e-35 | 128 |
| MS.gene98673.t1 | MTR_3g085910 | 34.962 | 266 | 120 | 8 | 51 | 269 | 16 | 275 | 1.55e-33 | 124 |
| MS.gene98673.t1 | MTR_6g023220 | 32.105 | 190 | 120 | 4 | 118 | 303 | 170 | 354 | 1.02e-21 | 94.4 |
| MS.gene98673.t1 | MTR_1g093300 | 48.387 | 93 | 47 | 1 | 137 | 228 | 6 | 98 | 1.46e-19 | 83.6 |
| MS.gene98673.t1 | MTR_6g091850 | 41.584 | 101 | 53 | 2 | 213 | 307 | 1 | 101 | 5.15e-17 | 75.5 |
| MS.gene98673.t1 | MTR_1g012330 | 60.000 | 60 | 24 | 0 | 99 | 158 | 62 | 121 | 2.16e-14 | 72.0 |
| MS.gene98673.t1 | MTR_0128s0040 | 43.750 | 96 | 14 | 1 | 69 | 124 | 41 | 136 | 1.45e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAACAAAATAAATTAT+TGG | 0.204220 | 7.1:+31704179 | MS.gene98673:CDS |
| CCAGAATGTGAAGTGTATTC+AGG | 0.267618 | 7.1:+31704360 | MS.gene98673:CDS |
| CGATGAAGTTGATTATTCTA+TGG | 0.280856 | 7.1:+31704485 | MS.gene98673:CDS |
| CGGAAATCCATGGACTGTTT+TGG | 0.288615 | 7.1:+31703987 | MS.gene98673:CDS |
| AGTAAGTAACTTTGGCAAAA+AGG | 0.295703 | 7.1:-31704130 | None:intergenic |
| CCTGAATACACTTCACATTC+TGG | 0.296027 | 7.1:-31704360 | None:intergenic |
| ATTGCTCAGCGCATGGCATT+TGG | 0.329174 | 7.1:-31704283 | None:intergenic |
| CTTTCATATCCCCACTTTCC+CGG | 0.335775 | 7.1:-31704306 | None:intergenic |
| ATCAGTCTCGATATTCTAGA+TGG | 0.345680 | 7.1:+31703947 | MS.gene98673:CDS |
| AGTCCATGGATTTCCGTGTT+TGG | 0.349831 | 7.1:-31703980 | None:intergenic |
| AAAATCCAGCTTTCGAGATA+TGG | 0.371968 | 7.1:-31703515 | None:intergenic |
| TGTTGACTTCAGCGAACTTT+CGG | 0.382328 | 7.1:+31703477 | MS.gene98673:CDS |
| TACACCTATCTCAGCCTTAT+CGG | 0.384690 | 7.1:-31704046 | None:intergenic |
| ATAAATTATTGGACGTCTAC+AGG | 0.413663 | 7.1:+31704190 | MS.gene98673:CDS |
| TTGCTCAGCGCATGGCATTT+GGG | 0.414008 | 7.1:-31704282 | None:intergenic |
| CCAAAGTTACTTACTTGTGA+TGG | 0.415525 | 7.1:+31704138 | MS.gene98673:CDS |
| AGCCAATACAGTTGTGATCT+AGG | 0.419217 | 7.1:-31704438 | None:intergenic |
| TTATGTCAAGCTAGAAACTT+TGG | 0.427927 | 7.1:+31704233 | MS.gene98673:CDS |
| TGCCATGCGCTGAGCAATCC+GGG | 0.435971 | 7.1:+31704288 | MS.gene98673:CDS |
| ATGCCATGCGCTGAGCAATC+CGG | 0.444798 | 7.1:+31704287 | MS.gene98673:CDS |
| CCATCACAAGTAAGTAACTT+TGG | 0.447007 | 7.1:-31704138 | None:intergenic |
| TATTTATGTTCTCACCGATA+AGG | 0.448466 | 7.1:+31704032 | MS.gene98673:CDS |
| CTCCTAGATCACAACTGTAT+TGG | 0.458229 | 7.1:+31704436 | MS.gene98673:CDS |
| CGCTGAGCAATCCGGGAAAG+TGG | 0.475761 | 7.1:+31704295 | MS.gene98673:CDS |
| TATGTCAAGCTAGAAACTTT+GGG | 0.484550 | 7.1:+31704234 | MS.gene98673:CDS |
| CAGAATGTGAAGTGTATTCA+GGG | 0.493079 | 7.1:+31704361 | MS.gene98673:CDS |
| CACAACTGTATTGGCTGGAT+TGG | 0.493429 | 7.1:+31704445 | MS.gene98673:CDS |
| CTCACCGATAAGGCTGAGAT+AGG | 0.500858 | 7.1:+31704042 | MS.gene98673:CDS |
| ACCTATCTGTGTTCGTCTAG+TGG | 0.505239 | 7.1:+31703730 | MS.gene98673:CDS |
| TAGATCACAACTGTATTGGC+TGG | 0.505287 | 7.1:+31704440 | MS.gene98673:CDS |
| TGATACCATATCTCGAAAGC+TGG | 0.511555 | 7.1:+31703510 | MS.gene98673:CDS |
| TTCCCGGATTGCTCAGCGCA+TGG | 0.514964 | 7.1:-31704290 | None:intergenic |
| CAAAGTTACTTACTTGTGAT+GGG | 0.516336 | 7.1:+31704139 | MS.gene98673:CDS |
| ACAAAGTCCAAAACAGTCCA+TGG | 0.533812 | 7.1:-31703994 | None:intergenic |
| GGAAGTCGATGACCATCAGC+TGG | 0.536242 | 7.1:-31704414 | None:intergenic |
| TCCACTAGACGAACACAGAT+AGG | 0.539372 | 7.1:-31703731 | None:intergenic |
| AATTCAGAGCAAGGGAGTGA+CGG | 0.544318 | 7.1:+31701398 | MS.gene98673:CDS |
| TTGTGATGGGAAGCTTCTTG+TGG | 0.555728 | 7.1:+31704152 | MS.gene98673:CDS |
| AAATGCATTGTTCCAGCTGA+TGG | 0.564449 | 7.1:+31704402 | MS.gene98673:CDS |
| TCAGTCTCGATATTCTAGAT+GGG | 0.573197 | 7.1:+31703948 | MS.gene98673:CDS |
| GCTGAGCAATCCGGGAAAGT+GGG | 0.577558 | 7.1:+31704296 | MS.gene98673:CDS |
| GTGACGGAGATGATTCTAAG+AGG | 0.579615 | 7.1:+31701414 | MS.gene98673:CDS |
| ATTCCAAACACGGAAATCCA+TGG | 0.590954 | 7.1:+31703977 | MS.gene98673:CDS |
| AGTGGATATCTCATCATGAA+AGG | 0.600961 | 7.1:+31703748 | MS.gene98673:CDS |
| CTCACAAAGAATTCAGAGCA+AGG | 0.609873 | 7.1:+31701389 | MS.gene98673:CDS |
| ACCGTACTTGACGATGATTG+AGG | 0.635962 | 7.1:-31701446 | None:intergenic |
| CTGAGCAATCCGGGAAAGTG+GGG | 0.636096 | 7.1:+31704297 | MS.gene98673:CDS |
| TCACAAAGAATTCAGAGCAA+GGG | 0.646539 | 7.1:+31701390 | MS.gene98673:CDS |
| TTCGAATGAATATGTCGTAG+TGG | 0.650403 | 7.1:+31703891 | MS.gene98673:CDS |
| TGGGTTACTTATTCCAAACA+CGG | 0.657134 | 7.1:+31703967 | MS.gene98673:CDS |
| CAATACAGTTGTGATCTAGG+AGG | 0.698754 | 7.1:-31704435 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAGAATTAGAAATTA+TGG | - | chr7.1:31702193-31702212 | None:intergenic | 10.0% |
| !!! | TGAAATATTACATATTTTTA+GGG | + | chr7.1:31702222-31702241 | MS.gene98673:intron | 10.0% |
| !! | ATTCATTAATTGTAGTTTAT+TGG | - | chr7.1:31703776-31703795 | None:intergenic | 15.0% |
| !! | CTTTGAACAAAATAAATTAT+TGG | + | chr7.1:31704179-31704198 | MS.gene98673:CDS | 15.0% |
| !! | GAAAAAACTAAAAAACTAAA+TGG | + | chr7.1:31702312-31702331 | MS.gene98673:intron | 15.0% |
| !!! | AGTTTATTCTTTTTTCTTTT+CGG | + | chr7.1:31702265-31702284 | MS.gene98673:intron | 15.0% |
| !!! | ATCATTTGTTTTCTTATAAA+TGG | - | chr7.1:31703799-31703818 | None:intergenic | 15.0% |
| !!! | GTGAAATATTACATATTTTT+AGG | + | chr7.1:31702221-31702240 | MS.gene98673:intron | 15.0% |
| !!! | TAGTTTTTTAGTTTTTTCTT+TGG | - | chr7.1:31702310-31702329 | None:intergenic | 15.0% |
| !! | AAAGTAATGCTTATAATTAG+TGG | + | chr7.1:31702124-31702143 | MS.gene98673:intron | 20.0% |
| !! | AACAATTTAACGATAAATTG+AGG | + | chr7.1:31702821-31702840 | MS.gene98673:intron | 20.0% |
| !! | AAGAAAAAAGAATAAACTGA+AGG | - | chr7.1:31702263-31702282 | None:intergenic | 20.0% |
| !! | AAGTAATGCTTATAATTAGT+GGG | + | chr7.1:31702125-31702144 | MS.gene98673:intron | 20.0% |
| !! | ACTAATTATAAGCATTACTT+TGG | - | chr7.1:31702125-31702144 | None:intergenic | 20.0% |
| !! | ATAGATGATTAAATTGATGT+TGG | - | chr7.1:31702935-31702954 | None:intergenic | 20.0% |
| !!! | ATTACATGATTGTTTTAGAT+TGG | + | chr7.1:31701749-31701768 | MS.gene98673:intron | 20.0% |
| !!! | GCACTTTTATTATTAACATT+GGG | + | chr7.1:31703399-31703418 | MS.gene98673:intron | 20.0% |
| !!! | GTCTTTCAATTAAATTTTGT+GGG | + | chr7.1:31701839-31701858 | MS.gene98673:intron | 20.0% |
| !!! | TCTTTCAATTAAATTTTGTG+GGG | + | chr7.1:31701840-31701859 | MS.gene98673:intron | 20.0% |
| !!! | TGCACTTTTATTATTAACAT+TGG | + | chr7.1:31703398-31703417 | MS.gene98673:intron | 20.0% |
| !!! | TTACATGATTGTTTTAGATT+GGG | + | chr7.1:31701750-31701769 | MS.gene98673:intron | 20.0% |
| !!! | TTAGTTTTGTCATAATATGA+GGG | - | chr7.1:31702476-31702495 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTGTCATAATATG+AGG | - | chr7.1:31702477-31702496 | None:intergenic | 20.0% |
| !!! | TTTTTCCAATATCATATAGA+TGG | + | chr7.1:31703199-31703218 | MS.gene98673:intron | 20.0% |
| ! | AAAACTAAATGGACATTCTT+AGG | + | chr7.1:31702323-31702342 | MS.gene98673:intron | 25.0% |
| ! | AAGAAATATGATACTTGCAA+GGG | - | chr7.1:31702726-31702745 | None:intergenic | 25.0% |
| ! | AATATAAAGAGGCCAAAAAT+AGG | + | chr7.1:31702425-31702444 | MS.gene98673:intron | 25.0% |
| ! | AATTTATTGGAGAAGTTTCA+TGG | + | chr7.1:31703591-31703610 | MS.gene98673:intron | 25.0% |
| ! | ACAACTAAAGGAATATAAAG+AGG | + | chr7.1:31702414-31702433 | MS.gene98673:intron | 25.0% |
| ! | ACAATCTCATGAAACAATAT+AGG | - | chr7.1:31701589-31701608 | None:intergenic | 25.0% |
| ! | ATCAACCATCTATATGATAT+TGG | - | chr7.1:31703207-31703226 | None:intergenic | 25.0% |
| ! | GAAATGAGAAAAATAATGCA+AGG | - | chr7.1:31704263-31704282 | None:intergenic | 25.0% |
| ! | GGAGAGTTCAAAAAATTTAT+TGG | + | chr7.1:31703578-31703597 | MS.gene98673:intron | 25.0% |
| ! | GTATAATAGAATAAACCCAT+GGG | - | chr7.1:31702797-31702816 | None:intergenic | 25.0% |
| ! | TAAGAAATATGATACTTGCA+AGG | - | chr7.1:31702727-31702746 | None:intergenic | 25.0% |
| ! | TAATATCATAGAAAATCGTG+AGG | - | chr7.1:31703354-31703373 | None:intergenic | 25.0% |
| ! | TATAATAGAATAAACCCATG+GGG | - | chr7.1:31702796-31702815 | None:intergenic | 25.0% |
| ! | TATTGTTGGAAATCAAAGTA+GGG | - | chr7.1:31702877-31702896 | None:intergenic | 25.0% |
| ! | TGTATAATAGAATAAACCCA+TGG | - | chr7.1:31702798-31702817 | None:intergenic | 25.0% |
| !! | CGTCTTTCAATTAAATTTTG+TGG | + | chr7.1:31701838-31701857 | MS.gene98673:intron | 25.0% |
| !! | TCAAAGATTTATGGGTTTTA+TGG | + | chr7.1:31703159-31703178 | MS.gene98673:intron | 25.0% |
| !! | TTGAGCCAATATTTTCAAAT+TGG | + | chr7.1:31703228-31703247 | MS.gene98673:intron | 25.0% |
| !!! | ATTACTTTGGCTTTATTTCT+AGG | - | chr7.1:31702112-31702131 | None:intergenic | 25.0% |
| !!! | GAAGATTATTTTTGTCGTTA+CGG | + | chr7.1:31703838-31703857 | MS.gene98673:intron | 25.0% |
| !!! | GCTTGTTTTAAATTTCTGAA+GGG | - | chr7.1:31702677-31702696 | None:intergenic | 25.0% |
| !!! | GTATTACTTACTTTTGTCAA+AGG | + | chr7.1:31703868-31703887 | MS.gene98673:intron | 25.0% |
| !!! | TAATTTTAACCTATCAGTCA+TGG | - | chr7.1:31701677-31701696 | None:intergenic | 25.0% |
| !!! | TATACAATTAAAGTGTCGTT+TGG | + | chr7.1:31702958-31702977 | MS.gene98673:intron | 25.0% |
| !!! | TATGGGTTTTATGGATTTAT+GGG | + | chr7.1:31703168-31703187 | MS.gene98673:intron | 25.0% |
| !!! | TTATGGGTTTTATGGATTTA+TGG | + | chr7.1:31703167-31703186 | MS.gene98673:intron | 25.0% |
| !!! | TTGATGTTGGAATTATTTTG+AGG | - | chr7.1:31702922-31702941 | None:intergenic | 25.0% |
| AAAAATAACTCATCTTAGCG+CGG | - | chr7.1:31703702-31703721 | None:intergenic | 30.0% | |
| AAAATAATCTTCAATAGCCG+AGG | - | chr7.1:31703830-31703849 | None:intergenic | 30.0% | |
| AATGATGACACTTGTATTGT+TGG | - | chr7.1:31702891-31702910 | None:intergenic | 30.0% | |
| ACAAAAGTAAGTAATACACG+AGG | - | chr7.1:31703865-31703884 | None:intergenic | 30.0% | |
| AGCAGAACATCAAAGATTTA+TGG | + | chr7.1:31703150-31703169 | MS.gene98673:intron | 30.0% | |
| AGTAAGTAACTTTGGCAAAA+AGG | - | chr7.1:31704133-31704152 | None:intergenic | 30.0% | |
| AGTTTCGATTATAGTGACTA+GGG | - | chr7.1:31702012-31702031 | None:intergenic | 30.0% | |
| ATAAATTATTGGACGTCTAC+AGG | + | chr7.1:31704190-31704209 | MS.gene98673:CDS | 30.0% | |
| ATTACTTAGGCTATGTCTTT+AGG | - | chr7.1:31701804-31701823 | None:intergenic | 30.0% | |
| ATTGTTGGAAATCAAAGTAG+GGG | - | chr7.1:31702876-31702895 | None:intergenic | 30.0% | |
| CAAAGTTACTTACTTGTGAT+GGG | + | chr7.1:31704139-31704158 | MS.gene98673:CDS | 30.0% | |
| CACCACCAATTTGAAAATAT+TGG | - | chr7.1:31703236-31703255 | None:intergenic | 30.0% | |
| CTTTAGTTGTACTAATGTTG+CGG | - | chr7.1:31702404-31702423 | None:intergenic | 30.0% | |
| GCAGAACATCAAAGATTTAT+GGG | + | chr7.1:31703151-31703170 | MS.gene98673:intron | 30.0% | |
| GTATTGTTGGAAATCAAAGT+AGG | - | chr7.1:31702878-31702897 | None:intergenic | 30.0% | |
| TAGTTTCGATTATAGTGACT+AGG | - | chr7.1:31702013-31702032 | None:intergenic | 30.0% | |
| TATGTCAAGCTAGAAACTTT+GGG | + | chr7.1:31704234-31704253 | MS.gene98673:CDS | 30.0% | |
| TATTTATGTTCTCACCGATA+AGG | + | chr7.1:31704032-31704051 | MS.gene98673:CDS | 30.0% | |
| TATTTCAAGCATCAACTAGA+TGG | + | chr7.1:31703117-31703136 | MS.gene98673:intron | 30.0% | |
| TCACTATAATCGAAACTACT+TGG | + | chr7.1:31702015-31702034 | MS.gene98673:intron | 30.0% | |
| TTATGTCAAGCTAGAAACTT+TGG | + | chr7.1:31704233-31704252 | MS.gene98673:CDS | 30.0% | |
| TTCAACAAAGCAAAACAATG+TGG | - | chr7.1:31701715-31701734 | None:intergenic | 30.0% | |
| ! | AGCCAATATTTTCAAATTGG+TGG | + | chr7.1:31703231-31703250 | MS.gene98673:intron | 30.0% |
| ! | CAATTCTGGTTATTCATCTA+TGG | - | chr7.1:31703263-31703282 | None:intergenic | 30.0% |
| ! | CGATGAAGTTGATTATTCTA+TGG | + | chr7.1:31704485-31704504 | MS.gene98673:CDS | 30.0% |
| ! | GACGATCTATTTCAATTTTC+TGG | + | chr7.1:31703538-31703557 | MS.gene98673:CDS | 30.0% |
| ! | TTCTTTTTACGATATGTCCA+GGG | - | chr7.1:31702357-31702376 | None:intergenic | 30.0% |
| ! | TTTAAATTTCTGAAGGGAGA+TGG | - | chr7.1:31702671-31702690 | None:intergenic | 30.0% |
| ! | TTTCTTTTCGGTACAAAAGA+GGG | + | chr7.1:31702277-31702296 | MS.gene98673:intron | 30.0% |
| ! | TTTTCTTTTCGGTACAAAAG+AGG | + | chr7.1:31702276-31702295 | MS.gene98673:intron | 30.0% |
| !!! | CGCTAAGATGAGTTATTTTT+GGG | + | chr7.1:31703702-31703721 | MS.gene98673:CDS | 30.0% |
| !!! | GCTAAGATGAGTTATTTTTG+GGG | + | chr7.1:31703703-31703722 | MS.gene98673:CDS | 30.0% |
| !!! | GGCTTGTTTTAAATTTCTGA+AGG | - | chr7.1:31702678-31702697 | None:intergenic | 30.0% |
| !!! | TGACTCTAAAATTCCTGTTT+TGG | - | chr7.1:31702539-31702558 | None:intergenic | 30.0% |
| AAAATCCAGCTTTCGAGATA+TGG | - | chr7.1:31703518-31703537 | None:intergenic | 35.0% | |
| AAATATGATACTTGCAAGGG+AGG | - | chr7.1:31702723-31702742 | None:intergenic | 35.0% | |
| AAGCCAAATGAGCATTACTT+AGG | - | chr7.1:31701817-31701836 | None:intergenic | 35.0% | |
| ACAAATGATCATTGACACCT+CGG | + | chr7.1:31703810-31703829 | MS.gene98673:intron | 35.0% | |
| ACCACAATGAAAAGCAATTC+TGG | - | chr7.1:31703277-31703296 | None:intergenic | 35.0% | |
| ACCTACATCTTGTAATGTGT+GGG | - | chr7.1:31701934-31701953 | None:intergenic | 35.0% | |
| AGTAACTTTGGCAAAAAGGA+TGG | - | chr7.1:31704129-31704148 | None:intergenic | 35.0% | |
| AGTGGATATCTCATCATGAA+AGG | + | chr7.1:31703748-31703767 | MS.gene98673:CDS | 35.0% | |
| ATCAGTCTCGATATTCTAGA+TGG | + | chr7.1:31703947-31703966 | MS.gene98673:CDS | 35.0% | |
| ATGACAACAATGACAATGCT+AGG | - | chr7.1:31703430-31703449 | None:intergenic | 35.0% | |
| CAGAATGTGAAGTGTATTCA+GGG | + | chr7.1:31704361-31704380 | MS.gene98673:CDS | 35.0% | |
| CCAAAGTTACTTACTTGTGA+TGG | + | chr7.1:31704138-31704157 | MS.gene98673:CDS | 35.0% | |
| CCATCACAAGTAAGTAACTT+TGG | - | chr7.1:31704141-31704160 | None:intergenic | 35.0% | |
| CGCAACATTAGTACAACTAA+AGG | + | chr7.1:31702402-31702421 | MS.gene98673:intron | 35.0% | |
| CTCAACTGAGTCTGTAAATA+AGG | - | chr7.1:31703026-31703045 | None:intergenic | 35.0% | |
| CTTATTTACAGACTCAGTTG+AGG | + | chr7.1:31703024-31703043 | MS.gene98673:intron | 35.0% | |
| GAACTGAAAAATATGCCCAA+TGG | + | chr7.1:31704102-31704121 | MS.gene98673:CDS | 35.0% | |
| GAAGTTGTTTGAACAAGTAG+TGG | - | chr7.1:31703628-31703647 | None:intergenic | 35.0% | |
| GATGGATCAAACGTTACATT+AGG | - | chr7.1:31702653-31702672 | None:intergenic | 35.0% | |
| GTCATTGTTGTCATTGTTTC+AGG | + | chr7.1:31703436-31703455 | MS.gene98673:intron | 35.0% | |
| GTTCTCTCCTATCAAAACTA+AGG | + | chr7.1:31702580-31702599 | MS.gene98673:intron | 35.0% | |
| GTTTCGATTATAGTGACTAG+GGG | - | chr7.1:31702011-31702030 | None:intergenic | 35.0% | |
| TAGCCTAAGTAATGCTCATT+TGG | + | chr7.1:31701811-31701830 | MS.gene98673:intron | 35.0% | |
| TCACAAAGAATTCAGAGCAA+GGG | + | chr7.1:31701390-31701409 | MS.gene98673:CDS | 35.0% | |
| TCAGTCTCGATATTCTAGAT+GGG | + | chr7.1:31703948-31703967 | MS.gene98673:CDS | 35.0% | |
| TCATAGAAAATCGTGAGGTA+AGG | - | chr7.1:31703349-31703368 | None:intergenic | 35.0% | |
| TCTGGTTATTCATCTATGGT+TGG | - | chr7.1:31703259-31703278 | None:intergenic | 35.0% | |
| TGGGTTACTTATTCCAAACA+CGG | + | chr7.1:31703967-31703986 | MS.gene98673:CDS | 35.0% | |
| TTCGAATGAATATGTCGTAG+TGG | + | chr7.1:31703891-31703910 | MS.gene98673:CDS | 35.0% | |
| TTGAACAAGTAGTGGTGATT+GGG | - | chr7.1:31703620-31703639 | None:intergenic | 35.0% | |
| TTGTTGGAAATCAAAGTAGG+GGG | - | chr7.1:31702875-31702894 | None:intergenic | 35.0% | |
| TTTAGATTGGGTGTTAGCTA+GGG | + | chr7.1:31701762-31701781 | MS.gene98673:intron | 35.0% | |
| TTTGAACAAGTAGTGGTGAT+TGG | - | chr7.1:31703621-31703640 | None:intergenic | 35.0% | |
| ! | AGGCTCTCAATCAACATTTT+GGG | + | chr7.1:31702445-31702464 | MS.gene98673:intron | 35.0% |
| ! | CTTCTTTTTACGATATGTCC+AGG | - | chr7.1:31702358-31702377 | None:intergenic | 35.0% |
| ! | GTTGATTGAGAGCCTATTTT+TGG | - | chr7.1:31702440-31702459 | None:intergenic | 35.0% |
| ! | TAGGCTCTCAATCAACATTT+TGG | + | chr7.1:31702444-31702463 | MS.gene98673:intron | 35.0% |
| ! | TATGACGTTTTGCACTATTG+AGG | + | chr7.1:31703074-31703093 | MS.gene98673:intron | 35.0% |
| ! | TGTCTTCTCTTTAGTCTTTC+TGG | + | chr7.1:31703297-31703316 | MS.gene98673:intron | 35.0% |
| ! | TTTTAGATTGGGTGTTAGCT+AGG | + | chr7.1:31701761-31701780 | MS.gene98673:intron | 35.0% |
| !! | ACCAGAATTGCTTTTCATTG+TGG | + | chr7.1:31703273-31703292 | MS.gene98673:intron | 35.0% |
| !! | GCGCTAAGATGAGTTATTTT+TGG | + | chr7.1:31703701-31703720 | MS.gene98673:CDS | 35.0% |
| !! | TCAATTTTCTGGTGTTTGCA+AGG | + | chr7.1:31703549-31703568 | MS.gene98673:CDS | 35.0% |
| !!! | ACCTTACAAACTGGTTTTGT+GGG | + | chr7.1:31702156-31702175 | MS.gene98673:intron | 35.0% |
| !!! | CTAAAATTCCTGTTTTGGTG+TGG | - | chr7.1:31702534-31702553 | None:intergenic | 35.0% |
| !!! | GCATGTACCTTAGTTTTGAT+AGG | - | chr7.1:31702590-31702609 | None:intergenic | 35.0% |
| AAATGCATTGTTCCAGCTGA+TGG | + | chr7.1:31704402-31704421 | MS.gene98673:CDS | 40.0% | |
| AACTGAAGGCAAGCATAACA+TGG | - | chr7.1:31702249-31702268 | None:intergenic | 40.0% | |
| ACAAAGTCCAAAACAGTCCA+TGG | - | chr7.1:31703997-31704016 | None:intergenic | 40.0% | |
| ACCAATATAGATAGTCCCCA+TGG | + | chr7.1:31702778-31702797 | MS.gene98673:intron | 40.0% | |
| ACCATCTTAGATATGCGATC+AGG | - | chr7.1:31701878-31701897 | None:intergenic | 40.0% | |
| ACCCACACATTACAAGATGT+AGG | + | chr7.1:31701930-31701949 | MS.gene98673:intron | 40.0% | |
| AGCCAATACAGTTGTGATCT+AGG | - | chr7.1:31704441-31704460 | None:intergenic | 40.0% | |
| AGTCTATGAAGCTCACTATG+AGG | + | chr7.1:31702376-31702395 | MS.gene98673:intron | 40.0% | |
| ATCTCATTGCACCCAGAATA+AGG | - | chr7.1:31702071-31702090 | None:intergenic | 40.0% | |
| ATTCCAAACACGGAAATCCA+TGG | + | chr7.1:31703977-31703996 | MS.gene98673:CDS | 40.0% | |
| CAAATATGCCACACCAAAAC+AGG | + | chr7.1:31702523-31702542 | MS.gene98673:intron | 40.0% | |
| CAATACAGTTGTGATCTAGG+AGG | - | chr7.1:31704438-31704457 | None:intergenic | 40.0% | |
| CACCTACATCTTGTAATGTG+TGG | - | chr7.1:31701935-31701954 | None:intergenic | 40.0% | |
| CCAATATAGATAGTCCCCAT+GGG | + | chr7.1:31702779-31702798 | MS.gene98673:intron | 40.0% | |
| CCAGAATGTGAAGTGTATTC+AGG | + | chr7.1:31704360-31704379 | MS.gene98673:CDS | 40.0% | |
| CCTGAATACACTTCACATTC+TGG | - | chr7.1:31704363-31704382 | None:intergenic | 40.0% | |
| CTCACAAAGAATTCAGAGCA+AGG | + | chr7.1:31701389-31701408 | MS.gene98673:CDS | 40.0% | |
| CTCCTAGATCACAACTGTAT+TGG | + | chr7.1:31704436-31704455 | MS.gene98673:CDS | 40.0% | |
| GATTATAGTGACTAGGGGAA+GGG | - | chr7.1:31702006-31702025 | None:intergenic | 40.0% | |
| GCATTTCTCACCTTACAAAC+TGG | + | chr7.1:31702147-31702166 | MS.gene98673:intron | 40.0% | |
| GGAGAGATGTAATGATGATC+AGG | - | chr7.1:31702699-31702718 | None:intergenic | 40.0% | |
| TAAGCTTCATCCATCCAACA+GGG | + | chr7.1:31702745-31702764 | MS.gene98673:intron | 40.0% | |
| TCCTCAATCATCGTCAAGTA+CGG | + | chr7.1:31701445-31701464 | MS.gene98673:intron | 40.0% | |
| TCCTGATCGCATATCTAAGA+TGG | + | chr7.1:31701874-31701893 | MS.gene98673:intron | 40.0% | |
| TGATACCATATCTCGAAAGC+TGG | + | chr7.1:31703510-31703529 | MS.gene98673:CDS | 40.0% | |
| TTAAGCTTCATCCATCCAAC+AGG | + | chr7.1:31702744-31702763 | MS.gene98673:intron | 40.0% | |
| TTAGATTGGGTGTTAGCTAG+GGG | + | chr7.1:31701763-31701782 | MS.gene98673:intron | 40.0% | |
| ! | ACACTTTTCATGCCGAAATC+TGG | - | chr7.1:31702614-31702633 | None:intergenic | 40.0% |
| ! | ACTTTTCATGCCGAAATCTG+GGG | - | chr7.1:31702612-31702631 | None:intergenic | 40.0% |
| ! | CACTTTTCATGCCGAAATCT+GGG | - | chr7.1:31702613-31702632 | None:intergenic | 40.0% |
| ! | GTGGCATATTTGTCGTCTTT+TGG | - | chr7.1:31702515-31702534 | None:intergenic | 40.0% |
| ! | GTTTGGTTGTTTCGTTGTGT+GGG | + | chr7.1:31702975-31702994 | MS.gene98673:intron | 40.0% |
| ! | TACACCTATCTCAGCCTTAT+CGG | - | chr7.1:31704049-31704068 | None:intergenic | 40.0% |
| ! | TAGATCACAACTGTATTGGC+TGG | + | chr7.1:31704440-31704459 | MS.gene98673:CDS | 40.0% |
| !! | TGTTGACTTCAGCGAACTTT+CGG | + | chr7.1:31703477-31703496 | MS.gene98673:CDS | 40.0% |
| !!! | CACCTTACAAACTGGTTTTG+TGG | + | chr7.1:31702155-31702174 | MS.gene98673:intron | 40.0% |
| !!! | CCTTACAAACTGGTTTTGTG+GGG | + | chr7.1:31702157-31702176 | MS.gene98673:intron | 40.0% |
| AAGCTTCATCCATCCAACAG+GGG | + | chr7.1:31702746-31702765 | MS.gene98673:intron | 45.0% | |
| AAGGTACATGCCCCAGATTT+CGG | + | chr7.1:31702599-31702618 | MS.gene98673:intron | 45.0% | |
| AATTCAGAGCAAGGGAGTGA+CGG | + | chr7.1:31701398-31701417 | MS.gene98673:CDS | 45.0% | |
| ACCGTACTTGACGATGATTG+AGG | - | chr7.1:31701449-31701468 | None:intergenic | 45.0% | |
| ACCTATCTGTGTTCGTCTAG+TGG | + | chr7.1:31703730-31703749 | MS.gene98673:CDS | 45.0% | |
| ACTACTTGGAGCTTCCTTCA+TGG | + | chr7.1:31702029-31702048 | MS.gene98673:intron | 45.0% | |
| AGTCCATGGATTTCCGTGTT+TGG | - | chr7.1:31703983-31704002 | None:intergenic | 45.0% | |
| CATTGCACCCAGAATAAGGA+AGG | - | chr7.1:31702067-31702086 | None:intergenic | 45.0% | |
| CCCATGGGGACTATCTATAT+TGG | - | chr7.1:31702782-31702801 | None:intergenic | 45.0% | |
| CCCCACAAAACCAGTTTGTA+AGG | - | chr7.1:31702160-31702179 | None:intergenic | 45.0% | |
| CGATTATAGTGACTAGGGGA+AGG | - | chr7.1:31702007-31702026 | None:intergenic | 45.0% | |
| CTTTCATATCCCCACTTTCC+CGG | - | chr7.1:31704309-31704328 | None:intergenic | 45.0% | |
| GCAGTTGAACCATGACTGAT+AGG | + | chr7.1:31701665-31701684 | MS.gene98673:intron | 45.0% | |
| GGCAAAAAGGATGGTCCATT+GGG | - | chr7.1:31704120-31704139 | None:intergenic | 45.0% | |
| TATGATACTTGCAAGGGAGG+TGG | - | chr7.1:31702720-31702739 | None:intergenic | 45.0% | |
| TCCAACGCCTTCCTTATTCT+GGG | + | chr7.1:31702057-31702076 | MS.gene98673:intron | 45.0% | |
| TCCACTAGACGAACACAGAT+AGG | - | chr7.1:31703734-31703753 | None:intergenic | 45.0% | |
| TGGCAAAAAGGATGGTCCAT+TGG | - | chr7.1:31704121-31704140 | None:intergenic | 45.0% | |
| TTCGTTGTGTGGGATTGTGA+TGG | + | chr7.1:31702985-31703004 | MS.gene98673:intron | 45.0% | |
| ! | CGTTTGGTTGTTTCGTTGTG+TGG | + | chr7.1:31702974-31702993 | MS.gene98673:intron | 45.0% |
| ! | GTGACGGAGATGATTCTAAG+AGG | + | chr7.1:31701414-31701433 | MS.gene98673:CDS | 45.0% |
| ! | TTGTGATGGGAAGCTTCTTG+TGG | + | chr7.1:31704152-31704171 | MS.gene98673:CDS | 45.0% |
| ! | TTTCTGGTGTTTGCAAGGAG+TGG | + | chr7.1:31703554-31703573 | MS.gene98673:intron | 45.0% |
| !! | CACAACTGTATTGGCTGGAT+TGG | + | chr7.1:31704445-31704464 | MS.gene98673:CDS | 45.0% |
| !! | CGGAAATCCATGGACTGTTT+TGG | + | chr7.1:31703987-31704006 | MS.gene98673:CDS | 45.0% |
| !!! | ACAAACTGGTTTTGTGGGGT+TGG | + | chr7.1:31702161-31702180 | MS.gene98673:intron | 45.0% |
| !!! | CAAACTGGTTTTGTGGGGTT+GGG | + | chr7.1:31702162-31702181 | MS.gene98673:intron | 45.0% |
| !! | AAATTTGAAAAAATATAAAT+TGG | + | chr7.1:31701625-31701644 | MS.gene98673:intron | 5.0% |
| !! | AATTTGAAAAAATATAAATT+GGG | + | chr7.1:31701626-31701645 | MS.gene98673:intron | 5.0% |
| ATTCTTAGGCATGCAAGCCC+TGG | + | chr7.1:31702337-31702356 | MS.gene98673:intron | 50.0% | |
| ATTGCTCAGCGCATGGCATT+TGG | - | chr7.1:31704286-31704305 | None:intergenic | 50.0% | |
| CTCACCGATAAGGCTGAGAT+AGG | + | chr7.1:31704042-31704061 | MS.gene98673:CDS | 50.0% | |
| CTCCAACGCCTTCCTTATTC+TGG | + | chr7.1:31702056-31702075 | MS.gene98673:intron | 50.0% | |
| GTGCAAAGTCGTGTACGTGA+GGG | + | chr7.1:31701952-31701971 | MS.gene98673:intron | 50.0% | |
| TCTAAGAGACCCCTGTTGGA+TGG | - | chr7.1:31702758-31702777 | None:intergenic | 50.0% | |
| TGCAAAGTCGTGTACGTGAG+GGG | + | chr7.1:31701953-31701972 | MS.gene98673:intron | 50.0% | |
| TTGCTCAGCGCATGGCATTT+GGG | - | chr7.1:31704285-31704304 | None:intergenic | 50.0% | |
| ! | ACCCAGAATAAGGAAGGCGT+TGG | - | chr7.1:31702061-31702080 | None:intergenic | 50.0% |
| !! | CAGAATAAGGAAGGCGTTGG+AGG | - | chr7.1:31702058-31702077 | None:intergenic | 50.0% |
| !! | TGGTTCTAAGAGACCCCTGT+TGG | - | chr7.1:31702762-31702781 | None:intergenic | 50.0% |
| ATGCCATGCGCTGAGCAATC+CGG | + | chr7.1:31704287-31704306 | MS.gene98673:CDS | 55.0% | |
| CTGAGCAATCCGGGAAAGTG+GGG | + | chr7.1:31704297-31704316 | MS.gene98673:CDS | 55.0% | |
| CTGGTGTTTGCAAGGAGTGG+AGG | + | chr7.1:31703557-31703576 | MS.gene98673:intron | 55.0% | |
| GCTGAGCAATCCGGGAAAGT+GGG | + | chr7.1:31704296-31704315 | MS.gene98673:CDS | 55.0% | |
| GGAAGTCGATGACCATCAGC+TGG | - | chr7.1:31704417-31704436 | None:intergenic | 55.0% | |
| GGTGCAAAGTCGTGTACGTG+AGG | + | chr7.1:31701951-31701970 | MS.gene98673:intron | 55.0% | |
| ! | CTAGGGGAAGGGCGCAATTA+AGG | - | chr7.1:31701995-31702014 | None:intergenic | 55.0% |
| !! | GCGCGGTAAGCTCGTTTTTC+AGG | - | chr7.1:31703685-31703704 | None:intergenic | 55.0% |
| CGCTGAGCAATCCGGGAAAG+TGG | + | chr7.1:31704295-31704314 | MS.gene98673:CDS | 60.0% | |
| TGCCATGCGCTGAGCAATCC+GGG | + | chr7.1:31704288-31704307 | MS.gene98673:CDS | 60.0% | |
| TTCCCGGATTGCTCAGCGCA+TGG | - | chr7.1:31704293-31704312 | None:intergenic | 60.0% | |
| ! | GGCGTTGGAGGTTGCCATGA+AGG | - | chr7.1:31702046-31702065 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 31701371 | 31704515 | 31701371 | ID=MS.gene98673 |
| chr7.1 | mRNA | 31701371 | 31704515 | 31701371 | ID=MS.gene98673.t1;Parent=MS.gene98673 |
| chr7.1 | exon | 31701371 | 31701461 | 31701371 | ID=MS.gene98673.t1.exon1;Parent=MS.gene98673.t1 |
| chr7.1 | CDS | 31701371 | 31701461 | 31701371 | ID=cds.MS.gene98673.t1;Parent=MS.gene98673.t1 |
| chr7.1 | exon | 31703458 | 31703572 | 31703458 | ID=MS.gene98673.t1.exon2;Parent=MS.gene98673.t1 |
| chr7.1 | CDS | 31703458 | 31703572 | 31703458 | ID=cds.MS.gene98673.t1;Parent=MS.gene98673.t1 |
| chr7.1 | exon | 31703678 | 31703769 | 31703678 | ID=MS.gene98673.t1.exon3;Parent=MS.gene98673.t1 |
| chr7.1 | CDS | 31703678 | 31703769 | 31703678 | ID=cds.MS.gene98673.t1;Parent=MS.gene98673.t1 |
| chr7.1 | exon | 31703890 | 31704515 | 31703890 | ID=MS.gene98673.t1.exon4;Parent=MS.gene98673.t1 |
| chr7.1 | CDS | 31703890 | 31704515 | 31703890 | ID=cds.MS.gene98673.t1;Parent=MS.gene98673.t1 |
| Gene Sequence |
| Protein sequence |
