Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42891.t1 | PNY07678.1 | 51.4 | 350 | 93 | 3 | 35 | 307 | 2 | 351 | 1.30E-84 | 323.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42891.t1 | A0A2K3NXB6 | 51.4 | 350 | 93 | 3 | 35 | 307 | 2 | 351 | 9.6e-85 | 323.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene42891 | 0.817126 | 3.88E-52 | -1.69E-46 |
| MS.gene049587 | MS.gene42891 | 0.801895 | 7.26E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene42891 | 0.893031 | 9.17E-75 | -1.69E-46 |
| MS.gene052447 | MS.gene42891 | 0.841924 | 3.54E-58 | -1.69E-46 |
| MS.gene05329 | MS.gene42891 | 0.821538 | 3.83E-53 | -1.69E-46 |
| MS.gene05404 | MS.gene42891 | 0.813513 | 2.46E-51 | -1.69E-46 |
| MS.gene054174 | MS.gene42891 | 0.865358 | 6.26E-65 | -1.69E-46 |
| MS.gene054175 | MS.gene42891 | 0.871094 | 8.88E-67 | -1.69E-46 |
| MS.gene054484 | MS.gene42891 | 0.84406 | 9.55E-59 | -1.69E-46 |
| MS.gene055017 | MS.gene42891 | 0.822903 | 1.85E-53 | -1.69E-46 |
| MS.gene055056 | MS.gene42891 | 0.808639 | 2.81E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene42891 | 0.816992 | 4.15E-52 | -1.69E-46 |
| MS.gene055952 | MS.gene42891 | 0.84032 | 9.34E-58 | -1.69E-46 |
| MS.gene058515 | MS.gene42891 | 0.815835 | 7.54E-52 | -1.69E-46 |
| MS.gene058580 | MS.gene42891 | 0.820201 | 7.77E-53 | -1.69E-46 |
| MS.gene059276 | MS.gene42891 | 0.839473 | 1.55E-57 | -1.69E-46 |
| MS.gene059458 | MS.gene42891 | 0.823165 | 1.60E-53 | -1.69E-46 |
| MS.gene059460 | MS.gene42891 | 0.80245 | 5.58E-49 | -1.69E-46 |
| MS.gene060610 | MS.gene42891 | 0.804793 | 1.82E-49 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42891.t1 | MTR_7g070100 | 46.064 | 343 | 107 | 4 | 42 | 307 | 9 | 350 | 4.16e-86 | 262 |
| MS.gene42891.t1 | MTR_3g006100 | 41.834 | 349 | 123 | 6 | 36 | 305 | 3 | 350 | 3.61e-80 | 247 |
| MS.gene42891.t1 | MTR_3g006010 | 42.192 | 365 | 129 | 7 | 21 | 304 | 103 | 466 | 2.30e-79 | 249 |
| MS.gene42891.t1 | MTR_4g133490 | 42.609 | 345 | 112 | 8 | 42 | 305 | 7 | 346 | 1.67e-78 | 243 |
| MS.gene42891.t1 | MTR_3g006120 | 41.954 | 348 | 122 | 6 | 36 | 304 | 3 | 349 | 8.19e-78 | 241 |
| MS.gene42891.t1 | MTR_3g006140 | 39.888 | 356 | 134 | 6 | 30 | 306 | 19 | 373 | 1.94e-75 | 236 |
| MS.gene42891.t1 | MTR_3g006180 | 42.478 | 339 | 115 | 6 | 47 | 306 | 1 | 338 | 8.01e-75 | 233 |
| MS.gene42891.t1 | MTR_4g133320 | 45.196 | 281 | 103 | 7 | 71 | 305 | 31 | 306 | 6.14e-70 | 219 |
| MS.gene42891.t1 | MTR_1g100280 | 42.012 | 338 | 126 | 10 | 32 | 307 | 8 | 337 | 8.27e-69 | 218 |
| MS.gene42891.t1 | MTR_1g109340 | 41.718 | 326 | 166 | 7 | 1 | 306 | 33 | 354 | 2.28e-67 | 214 |
| MS.gene42891.t1 | MTR_3g045700 | 39.888 | 356 | 124 | 8 | 35 | 307 | 2 | 350 | 6.19e-67 | 213 |
| MS.gene42891.t1 | MTR_7g083950 | 39.237 | 367 | 130 | 11 | 24 | 307 | 76 | 432 | 2.44e-64 | 209 |
| MS.gene42891.t1 | MTR_6g091830 | 36.712 | 365 | 142 | 7 | 29 | 307 | 94 | 455 | 2.39e-58 | 194 |
| MS.gene42891.t1 | MTR_3g068220 | 37.255 | 357 | 135 | 8 | 35 | 305 | 2 | 355 | 4.02e-58 | 191 |
| MS.gene42891.t1 | MTR_6g092140 | 36.438 | 365 | 143 | 7 | 29 | 307 | 94 | 455 | 2.54e-57 | 191 |
| MS.gene42891.t1 | MTR_6g011110 | 45.045 | 222 | 103 | 7 | 99 | 307 | 62 | 277 | 2.13e-48 | 163 |
| MS.gene42891.t1 | MTR_6g088340 | 37.931 | 290 | 125 | 6 | 70 | 307 | 147 | 433 | 5.45e-48 | 166 |
| MS.gene42891.t1 | MTR_3g086480 | 44.608 | 204 | 103 | 6 | 99 | 298 | 55 | 252 | 1.90e-43 | 149 |
| MS.gene42891.t1 | MTR_1g109520 | 46.835 | 158 | 79 | 3 | 154 | 306 | 19 | 176 | 8.31e-36 | 127 |
| MS.gene42891.t1 | MTR_1g089620 | 50.360 | 139 | 56 | 3 | 135 | 272 | 34 | 160 | 6.38e-35 | 128 |
| MS.gene42891.t1 | MTR_3g085910 | 34.962 | 266 | 120 | 8 | 51 | 269 | 16 | 275 | 1.55e-33 | 124 |
| MS.gene42891.t1 | MTR_6g023220 | 32.105 | 190 | 120 | 4 | 118 | 303 | 170 | 354 | 1.02e-21 | 94.4 |
| MS.gene42891.t1 | MTR_1g093300 | 48.387 | 93 | 47 | 1 | 137 | 228 | 6 | 98 | 1.46e-19 | 83.6 |
| MS.gene42891.t1 | MTR_6g091850 | 41.584 | 101 | 53 | 2 | 213 | 307 | 1 | 101 | 5.15e-17 | 75.5 |
| MS.gene42891.t1 | MTR_1g012330 | 60.000 | 60 | 24 | 0 | 99 | 158 | 62 | 121 | 2.16e-14 | 72.0 |
| MS.gene42891.t1 | MTR_0128s0040 | 43.750 | 96 | 14 | 1 | 69 | 124 | 41 | 136 | 1.45e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 51 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAACAAAATAAATTAT+TGG | 0.204220 | 7.2:+33321436 | MS.gene42891:CDS |
| CCAGAATGTGAAGTGTATTC+AGG | 0.267618 | 7.2:+33321617 | MS.gene42891:CDS |
| CGATGAAGTTGATTATTCTA+TGG | 0.280856 | 7.2:+33321742 | MS.gene42891:CDS |
| CGGAAATCCATGGACTGTTT+TGG | 0.288615 | 7.2:+33321244 | MS.gene42891:CDS |
| AGTAAGTAACTTTGGCAAAA+AGG | 0.295703 | 7.2:-33321387 | None:intergenic |
| CCTGAATACACTTCACATTC+TGG | 0.296027 | 7.2:-33321617 | None:intergenic |
| ATTGCTCAGCGCATGGCATT+TGG | 0.329174 | 7.2:-33321540 | None:intergenic |
| CTTTCATATCCCCACTTTCC+CGG | 0.335775 | 7.2:-33321563 | None:intergenic |
| ATCAGTCTCGATATTCTAGA+TGG | 0.345680 | 7.2:+33321204 | MS.gene42891:CDS |
| AGTCCATGGATTTCCGTGTT+TGG | 0.349831 | 7.2:-33321237 | None:intergenic |
| AAAATCCAGCTTTCGAGATA+TGG | 0.371968 | 7.2:-33320772 | None:intergenic |
| TGTTGACTTCAGCGAACTTT+CGG | 0.382328 | 7.2:+33320734 | MS.gene42891:CDS |
| TACACCTATCTCAGCCTTAT+CGG | 0.384690 | 7.2:-33321303 | None:intergenic |
| ATAAATTATTGGACGTCTAC+AGG | 0.413663 | 7.2:+33321447 | MS.gene42891:CDS |
| TTGCTCAGCGCATGGCATTT+GGG | 0.414008 | 7.2:-33321539 | None:intergenic |
| CCAAAGTTACTTACTTGTGA+TGG | 0.415525 | 7.2:+33321395 | MS.gene42891:CDS |
| AGCCAATACAGTTGTGATCT+AGG | 0.419217 | 7.2:-33321695 | None:intergenic |
| TTATGTCAAGCTAGAAACTT+TGG | 0.427927 | 7.2:+33321490 | MS.gene42891:CDS |
| TGCCATGCGCTGAGCAATCC+GGG | 0.435971 | 7.2:+33321545 | MS.gene42891:CDS |
| ATGCCATGCGCTGAGCAATC+CGG | 0.444798 | 7.2:+33321544 | MS.gene42891:CDS |
| CCATCACAAGTAAGTAACTT+TGG | 0.447007 | 7.2:-33321395 | None:intergenic |
| TATTTATGTTCTCACCGATA+AGG | 0.448466 | 7.2:+33321289 | MS.gene42891:CDS |
| CTCCTAGATCACAACTGTAT+TGG | 0.458229 | 7.2:+33321693 | MS.gene42891:CDS |
| CGCTGAGCAATCCGGGAAAG+TGG | 0.475761 | 7.2:+33321552 | MS.gene42891:CDS |
| TATGTCAAGCTAGAAACTTT+GGG | 0.484550 | 7.2:+33321491 | MS.gene42891:CDS |
| CAGAATGTGAAGTGTATTCA+GGG | 0.493079 | 7.2:+33321618 | MS.gene42891:CDS |
| CACAACTGTATTGGCTGGAT+TGG | 0.493429 | 7.2:+33321702 | MS.gene42891:CDS |
| CTCACCGATAAGGCTGAGAT+AGG | 0.500858 | 7.2:+33321299 | MS.gene42891:CDS |
| ACCTATCTGTGTTCGTCTAG+TGG | 0.505239 | 7.2:+33320987 | MS.gene42891:CDS |
| TAGATCACAACTGTATTGGC+TGG | 0.505287 | 7.2:+33321697 | MS.gene42891:CDS |
| TGATACCATATCTCGAAAGC+TGG | 0.511555 | 7.2:+33320767 | MS.gene42891:CDS |
| TTCCCGGATTGCTCAGCGCA+TGG | 0.514964 | 7.2:-33321547 | None:intergenic |
| CAAAGTTACTTACTTGTGAT+GGG | 0.516336 | 7.2:+33321396 | MS.gene42891:CDS |
| ACAAAGTCCAAAACAGTCCA+TGG | 0.533812 | 7.2:-33321251 | None:intergenic |
| GGAAGTCGATGACCATCAGC+TGG | 0.536242 | 7.2:-33321671 | None:intergenic |
| TCCACTAGACGAACACAGAT+AGG | 0.539372 | 7.2:-33320988 | None:intergenic |
| AATTCAGAGCAAGGGAGTGA+CGG | 0.544318 | 7.2:+33318610 | MS.gene42891:CDS |
| TTGTGATGGGAAGCTTCTTG+TGG | 0.555728 | 7.2:+33321409 | MS.gene42891:CDS |
| AAATGCATTGTTCCAGCTGA+TGG | 0.564449 | 7.2:+33321659 | MS.gene42891:CDS |
| TCAGTCTCGATATTCTAGAT+GGG | 0.573197 | 7.2:+33321205 | MS.gene42891:CDS |
| GCTGAGCAATCCGGGAAAGT+GGG | 0.577558 | 7.2:+33321553 | MS.gene42891:CDS |
| GTGACGGAGATGATTCTAAG+AGG | 0.579615 | 7.2:+33318626 | MS.gene42891:CDS |
| ATTCCAAACACGGAAATCCA+TGG | 0.590954 | 7.2:+33321234 | MS.gene42891:CDS |
| AGTGGATATCTCATCATGAA+AGG | 0.600961 | 7.2:+33321005 | MS.gene42891:CDS |
| CTCACAAAGAATTCAGAGCA+AGG | 0.609873 | 7.2:+33318601 | MS.gene42891:CDS |
| ACCGTACTTGACGATGATTG+AGG | 0.635962 | 7.2:-33318658 | None:intergenic |
| CTGAGCAATCCGGGAAAGTG+GGG | 0.636096 | 7.2:+33321554 | MS.gene42891:CDS |
| TCACAAAGAATTCAGAGCAA+GGG | 0.646539 | 7.2:+33318602 | MS.gene42891:CDS |
| TTCGAATGAATATGTCGTAG+TGG | 0.650403 | 7.2:+33321148 | MS.gene42891:CDS |
| TGGGTTACTTATTCCAAACA+CGG | 0.657134 | 7.2:+33321224 | MS.gene42891:CDS |
| CAATACAGTTGTGATCTAGG+AGG | 0.698754 | 7.2:-33321692 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAGAATTAGAAATTA+TGG | - | chr7.2:33319405-33319424 | None:intergenic | 10.0% |
| !!! | TGAAATATTACATATTTTTA+GGG | + | chr7.2:33319434-33319453 | MS.gene42891:intron | 10.0% |
| !! | ATAGATGATTAAATTGATAT+TGG | - | chr7.2:33320192-33320211 | None:intergenic | 15.0% |
| !! | ATTCATTAATTGTAGTTTAT+TGG | - | chr7.2:33321033-33321052 | None:intergenic | 15.0% |
| !! | CTTTGAACAAAATAAATTAT+TGG | + | chr7.2:33321436-33321455 | MS.gene42891:CDS | 15.0% |
| !! | GAAAAAACTAAAAAACTAAA+TGG | + | chr7.2:33319524-33319543 | MS.gene42891:intron | 15.0% |
| !!! | ATATATAAAAGCAATTTTAG+TGG | - | chr7.2:33319768-33319787 | None:intergenic | 15.0% |
| !!! | ATCATTTGTTTTCTTATAAA+TGG | - | chr7.2:33321056-33321075 | None:intergenic | 15.0% |
| !!! | GTGAAATATTACATATTTTT+AGG | + | chr7.2:33319433-33319452 | MS.gene42891:intron | 15.0% |
| !!! | TAGTTTTTTAGTTTTTTCTT+TGG | - | chr7.2:33319522-33319541 | None:intergenic | 15.0% |
| !!! | TATATAAAAGCAATTTTAGT+GGG | - | chr7.2:33319767-33319786 | None:intergenic | 15.0% |
| !! | AAAGTAATGCTTATAATTAG+TGG | + | chr7.2:33319336-33319355 | MS.gene42891:intron | 20.0% |
| !! | AAGTAATGCTTATAATTAGT+GGG | + | chr7.2:33319337-33319356 | MS.gene42891:intron | 20.0% |
| !! | AATATAAAGAAGCCAAAAAT+AGG | + | chr7.2:33319637-33319656 | MS.gene42891:intron | 20.0% |
| !! | ACTAATTATAAGCATTACTT+TGG | - | chr7.2:33319337-33319356 | None:intergenic | 20.0% |
| !!! | AGTTTGTTCTTTTTTCTTTT+TGG | + | chr7.2:33319477-33319496 | MS.gene42891:intron | 20.0% |
| !!! | ATATAAAAGCAATTTTAGTG+GGG | - | chr7.2:33319766-33319785 | None:intergenic | 20.0% |
| !!! | ATTACATGATTGTTTTAGAT+TGG | + | chr7.2:33318961-33318980 | MS.gene42891:intron | 20.0% |
| !!! | CTCTAAAATTCATTTATACA+TGG | - | chr7.2:33319793-33319812 | None:intergenic | 20.0% |
| !!! | GCACTTTTATTATTAACATT+GGG | + | chr7.2:33320656-33320675 | MS.gene42891:intron | 20.0% |
| !!! | GTCTTTCAATTAAATTTTGT+GGG | + | chr7.2:33319051-33319070 | MS.gene42891:intron | 20.0% |
| !!! | TCTTTCAATTAAATTTTGTG+GGG | + | chr7.2:33319052-33319071 | MS.gene42891:intron | 20.0% |
| !!! | TGCACTTTTATTATTAACAT+TGG | + | chr7.2:33320655-33320674 | MS.gene42891:intron | 20.0% |
| !!! | TTACATGATTGTTTTAGATT+GGG | + | chr7.2:33318962-33318981 | MS.gene42891:intron | 20.0% |
| !!! | TTAGTTTTGTCATAATATGA+GGG | - | chr7.2:33319688-33319707 | None:intergenic | 20.0% |
| !!! | TTGATATTGGAATTATTTTG+AGG | - | chr7.2:33320179-33320198 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTGTCATAATATG+AGG | - | chr7.2:33319689-33319708 | None:intergenic | 20.0% |
| !!! | TTTTTCCAATATCATATAGA+TGG | + | chr7.2:33320456-33320475 | MS.gene42891:intron | 20.0% |
| ! | AAAACTAAATGGACATTCTT+AGG | + | chr7.2:33319535-33319554 | MS.gene42891:intron | 25.0% |
| ! | AAGAAAAAAGAACAAACTGA+AGG | - | chr7.2:33319475-33319494 | None:intergenic | 25.0% |
| ! | AAGAAATATGATACTTGCAA+GGG | - | chr7.2:33319983-33320002 | None:intergenic | 25.0% |
| ! | AATTTATTGGAGAAGTTTCA+TGG | + | chr7.2:33320848-33320867 | MS.gene42891:intron | 25.0% |
| ! | ACAATCTCATGAAACAATAT+AGG | - | chr7.2:33318801-33318820 | None:intergenic | 25.0% |
| ! | ATCAACCATCTATATGATAT+TGG | - | chr7.2:33320464-33320483 | None:intergenic | 25.0% |
| ! | GAAATGAGAAAAATAATGCA+AGG | - | chr7.2:33321520-33321539 | None:intergenic | 25.0% |
| ! | GGAGAGTTCAAAAAATTTAT+TGG | + | chr7.2:33320835-33320854 | MS.gene42891:intron | 25.0% |
| ! | GTATAATAGAATAAACCCAT+GGG | - | chr7.2:33320054-33320073 | None:intergenic | 25.0% |
| ! | TAAGAAATATGATACTTGCA+AGG | - | chr7.2:33319984-33320003 | None:intergenic | 25.0% |
| ! | TAATATCATAGAAAATCGTG+AGG | - | chr7.2:33320611-33320630 | None:intergenic | 25.0% |
| ! | TATAATAGAATAAACCCATG+GGG | - | chr7.2:33320053-33320072 | None:intergenic | 25.0% |
| ! | TATTGTTGGAAATCAAAGTA+GGG | - | chr7.2:33320134-33320153 | None:intergenic | 25.0% |
| ! | TGTATAATAGAATAAACCCA+TGG | - | chr7.2:33320055-33320074 | None:intergenic | 25.0% |
| !! | CGTCTTTCAATTAAATTTTG+TGG | + | chr7.2:33319050-33319069 | MS.gene42891:intron | 25.0% |
| !! | TCAAAGATTTATGGGTTTTA+TGG | + | chr7.2:33320416-33320435 | MS.gene42891:intron | 25.0% |
| !! | TTGAGCCAATATTTTCAAAT+TGG | + | chr7.2:33320485-33320504 | MS.gene42891:intron | 25.0% |
| !!! | ATTACTTTGGCTTTATTTCT+AGG | - | chr7.2:33319324-33319343 | None:intergenic | 25.0% |
| !!! | GAAGATTATTTTTGTCGTTA+CGG | + | chr7.2:33321095-33321114 | MS.gene42891:intron | 25.0% |
| !!! | GCTTGTTTTAAATTTCTGAA+GGG | - | chr7.2:33319934-33319953 | None:intergenic | 25.0% |
| !!! | GTATTACTTACTTTTGTCAA+AGG | + | chr7.2:33321125-33321144 | MS.gene42891:intron | 25.0% |
| !!! | TAATTTTAACCTATCAGTCA+TGG | - | chr7.2:33318889-33318908 | None:intergenic | 25.0% |
| !!! | TATACAATTAAAGTGTCGTT+TGG | + | chr7.2:33320215-33320234 | MS.gene42891:intron | 25.0% |
| !!! | TATGGGTTTTATGGATTTAT+GGG | + | chr7.2:33320425-33320444 | MS.gene42891:intron | 25.0% |
| !!! | TTATGGGTTTTATGGATTTA+TGG | + | chr7.2:33320424-33320443 | MS.gene42891:intron | 25.0% |
| !!! | TTTCTTTTTGGTACAAAAGA+GGG | + | chr7.2:33319489-33319508 | MS.gene42891:intron | 25.0% |
| !!! | TTTTCTTTTTGGTACAAAAG+AGG | + | chr7.2:33319488-33319507 | MS.gene42891:intron | 25.0% |
| AAAAATAACTCATCTTAGCG+CGG | - | chr7.2:33320959-33320978 | None:intergenic | 30.0% | |
| AAAATAATCTTCAATAGCCG+AGG | - | chr7.2:33321087-33321106 | None:intergenic | 30.0% | |
| AATGATGACACTTGTATTGT+TGG | - | chr7.2:33320148-33320167 | None:intergenic | 30.0% | |
| ACAAAAGTAAGTAATACACG+AGG | - | chr7.2:33321122-33321141 | None:intergenic | 30.0% | |
| AGCAGAACTTCAAAGATTTA+TGG | + | chr7.2:33320407-33320426 | MS.gene42891:intron | 30.0% | |
| AGTAAGTAACTTTGGCAAAA+AGG | - | chr7.2:33321390-33321409 | None:intergenic | 30.0% | |
| AGTTTCGATTATAGTGACTA+GGG | - | chr7.2:33319224-33319243 | None:intergenic | 30.0% | |
| ATAAATTATTGGACGTCTAC+AGG | + | chr7.2:33321447-33321466 | MS.gene42891:CDS | 30.0% | |
| ATTACTTAGGCTATGTCTTT+AGG | - | chr7.2:33319016-33319035 | None:intergenic | 30.0% | |
| ATTGTTGGAAATCAAAGTAG+GGG | - | chr7.2:33320133-33320152 | None:intergenic | 30.0% | |
| CAAAGTTACTTACTTGTGAT+GGG | + | chr7.2:33321396-33321415 | MS.gene42891:CDS | 30.0% | |
| CACCACCAATTTGAAAATAT+TGG | - | chr7.2:33320493-33320512 | None:intergenic | 30.0% | |
| CTCAACATTAGTACAACTAA+AGG | + | chr7.2:33319614-33319633 | MS.gene42891:intron | 30.0% | |
| CTTTAGTTGTACTAATGTTG+AGG | - | chr7.2:33319616-33319635 | None:intergenic | 30.0% | |
| GCAGAACTTCAAAGATTTAT+GGG | + | chr7.2:33320408-33320427 | MS.gene42891:intron | 30.0% | |
| GTATTGTTGGAAATCAAAGT+AGG | - | chr7.2:33320135-33320154 | None:intergenic | 30.0% | |
| TAGTTTCGATTATAGTGACT+AGG | - | chr7.2:33319225-33319244 | None:intergenic | 30.0% | |
| TATGTCAAGCTAGAAACTTT+GGG | + | chr7.2:33321491-33321510 | MS.gene42891:CDS | 30.0% | |
| TATTTATGTTCTCACCGATA+AGG | + | chr7.2:33321289-33321308 | MS.gene42891:CDS | 30.0% | |
| TATTTCAAGCATCAACTAGA+TGG | + | chr7.2:33320374-33320393 | MS.gene42891:intron | 30.0% | |
| TCACTATAATCGAAACTACT+TGG | + | chr7.2:33319227-33319246 | MS.gene42891:intron | 30.0% | |
| TTATGTCAAGCTAGAAACTT+TGG | + | chr7.2:33321490-33321509 | MS.gene42891:CDS | 30.0% | |
| TTCAACAAAGCAAAACAATG+TGG | - | chr7.2:33318927-33318946 | None:intergenic | 30.0% | |
| ! | AGCCAATATTTTCAAATTGG+TGG | + | chr7.2:33320488-33320507 | MS.gene42891:intron | 30.0% |
| ! | CAATTCTGGTTATTCATCTA+TGG | - | chr7.2:33320520-33320539 | None:intergenic | 30.0% |
| ! | CGATGAAGTTGATTATTCTA+TGG | + | chr7.2:33321742-33321761 | MS.gene42891:CDS | 30.0% |
| ! | GACGATCTATTTCAATTTTC+TGG | + | chr7.2:33320795-33320814 | MS.gene42891:CDS | 30.0% |
| ! | TTCTTTTTACGATATGTCCA+GGG | - | chr7.2:33319569-33319588 | None:intergenic | 30.0% |
| ! | TTTAAATTTCTGAAGGGAGA+TGG | - | chr7.2:33319928-33319947 | None:intergenic | 30.0% |
| !!! | CGCTAAGATGAGTTATTTTT+GGG | + | chr7.2:33320959-33320978 | MS.gene42891:CDS | 30.0% |
| !!! | GCTAAGATGAGTTATTTTTG+GGG | + | chr7.2:33320960-33320979 | MS.gene42891:CDS | 30.0% |
| !!! | GGCTTGTTTTAAATTTCTGA+AGG | - | chr7.2:33319935-33319954 | None:intergenic | 30.0% |
| AAAATCCAGCTTTCGAGATA+TGG | - | chr7.2:33320775-33320794 | None:intergenic | 35.0% | |
| AAATATGATACTTGCAAGGG+AGG | - | chr7.2:33319980-33319999 | None:intergenic | 35.0% | |
| AAGCCAAATGAGCATTACTT+AGG | - | chr7.2:33319029-33319048 | None:intergenic | 35.0% | |
| ACAAATGATCATTGACACCT+CGG | + | chr7.2:33321067-33321086 | MS.gene42891:intron | 35.0% | |
| ACCACAATGAAAAGCAATTC+TGG | - | chr7.2:33320534-33320553 | None:intergenic | 35.0% | |
| ACCTACATCTTGTAATGTGT+GGG | - | chr7.2:33319146-33319165 | None:intergenic | 35.0% | |
| AGTAACTTTGGCAAAAAGGA+TGG | - | chr7.2:33321386-33321405 | None:intergenic | 35.0% | |
| AGTGGATATCTCATCATGAA+AGG | + | chr7.2:33321005-33321024 | MS.gene42891:CDS | 35.0% | |
| ATCAGTCTCGATATTCTAGA+TGG | + | chr7.2:33321204-33321223 | MS.gene42891:CDS | 35.0% | |
| ATGACAACAATGACAATGCT+AGG | - | chr7.2:33320687-33320706 | None:intergenic | 35.0% | |
| CAGAATGTGAAGTGTATTCA+GGG | + | chr7.2:33321618-33321637 | MS.gene42891:CDS | 35.0% | |
| CCAAAGTTACTTACTTGTGA+TGG | + | chr7.2:33321395-33321414 | MS.gene42891:CDS | 35.0% | |
| CCATCACAAGTAAGTAACTT+TGG | - | chr7.2:33321398-33321417 | None:intergenic | 35.0% | |
| CTCAACTGAGTCTGTAAATA+AGG | - | chr7.2:33320283-33320302 | None:intergenic | 35.0% | |
| CTTATTTACAGACTCAGTTG+AGG | + | chr7.2:33320281-33320300 | MS.gene42891:intron | 35.0% | |
| GAACTGAAAAATATGCCCAA+TGG | + | chr7.2:33321359-33321378 | MS.gene42891:CDS | 35.0% | |
| GAAGTTGTTTGAACAAGTAG+TGG | - | chr7.2:33320885-33320904 | None:intergenic | 35.0% | |
| GATGGATCAAACGTTACATT+AGG | - | chr7.2:33319910-33319929 | None:intergenic | 35.0% | |
| GTCATTGTTGTCATTGTTTC+AGG | + | chr7.2:33320693-33320712 | MS.gene42891:intron | 35.0% | |
| GTTCTCTCCTATCAAAACTA+AGG | + | chr7.2:33319837-33319856 | MS.gene42891:intron | 35.0% | |
| GTTTCGATTATAGTGACTAG+GGG | - | chr7.2:33319223-33319242 | None:intergenic | 35.0% | |
| TAGCCTAAGTAATGCTCATT+TGG | + | chr7.2:33319023-33319042 | MS.gene42891:intron | 35.0% | |
| TCACAAAGAATTCAGAGCAA+GGG | + | chr7.2:33318602-33318621 | MS.gene42891:CDS | 35.0% | |
| TCAGTCTCGATATTCTAGAT+GGG | + | chr7.2:33321205-33321224 | MS.gene42891:CDS | 35.0% | |
| TCATAGAAAATCGTGAGGTA+AGG | - | chr7.2:33320606-33320625 | None:intergenic | 35.0% | |
| TCTGGTTATTCATCTATGGT+TGG | - | chr7.2:33320516-33320535 | None:intergenic | 35.0% | |
| TGGGTTACTTATTCCAAACA+CGG | + | chr7.2:33321224-33321243 | MS.gene42891:CDS | 35.0% | |
| TTCGAATGAATATGTCGTAG+TGG | + | chr7.2:33321148-33321167 | MS.gene42891:CDS | 35.0% | |
| TTGAACAAGTAGTGGTGATT+GGG | - | chr7.2:33320877-33320896 | None:intergenic | 35.0% | |
| TTGTTGGAAATCAAAGTAGG+GGG | - | chr7.2:33320132-33320151 | None:intergenic | 35.0% | |
| TTTAGATTGGGTGTTAGCTA+GGG | + | chr7.2:33318974-33318993 | MS.gene42891:intron | 35.0% | |
| TTTGAACAAGTAGTGGTGAT+TGG | - | chr7.2:33320878-33320897 | None:intergenic | 35.0% | |
| ! | AGGCTCTCAATCAACATTTT+GGG | + | chr7.2:33319657-33319676 | MS.gene42891:intron | 35.0% |
| ! | CTTCTTTTTACGATATGTCC+AGG | - | chr7.2:33319570-33319589 | None:intergenic | 35.0% |
| ! | GTTGATTGAGAGCCTATTTT+TGG | - | chr7.2:33319652-33319671 | None:intergenic | 35.0% |
| ! | TAGGCTCTCAATCAACATTT+TGG | + | chr7.2:33319656-33319675 | MS.gene42891:intron | 35.0% |
| ! | TATGACGTTTTGCACTATTG+AGG | + | chr7.2:33320331-33320350 | MS.gene42891:intron | 35.0% |
| ! | TTTTAGATTGGGTGTTAGCT+AGG | + | chr7.2:33318973-33318992 | MS.gene42891:intron | 35.0% |
| !! | ACCAGAATTGCTTTTCATTG+TGG | + | chr7.2:33320530-33320549 | MS.gene42891:intron | 35.0% |
| !! | GCGCTAAGATGAGTTATTTT+TGG | + | chr7.2:33320958-33320977 | MS.gene42891:CDS | 35.0% |
| !! | TCAATTTTCTGGTGTTTGCA+AGG | + | chr7.2:33320806-33320825 | MS.gene42891:CDS | 35.0% |
| !!! | ACCTTACAAACTGGTTTTGT+GGG | + | chr7.2:33319368-33319387 | MS.gene42891:intron | 35.0% |
| !!! | GCATGTACCTTAGTTTTGAT+AGG | - | chr7.2:33319847-33319866 | None:intergenic | 35.0% |
| AAATGCATTGTTCCAGCTGA+TGG | + | chr7.2:33321659-33321678 | MS.gene42891:CDS | 40.0% | |
| AACTGAAGGCAAGCATAACA+TGG | - | chr7.2:33319461-33319480 | None:intergenic | 40.0% | |
| ACAAAGTCCAAAACAGTCCA+TGG | - | chr7.2:33321254-33321273 | None:intergenic | 40.0% | |
| ACCAATATAGATAGTCCCCA+TGG | + | chr7.2:33320035-33320054 | MS.gene42891:intron | 40.0% | |
| ACCATCTTAGATATGCGATC+AGG | - | chr7.2:33319090-33319109 | None:intergenic | 40.0% | |
| ACCCACACATTACAAGATGT+AGG | + | chr7.2:33319142-33319161 | MS.gene42891:intron | 40.0% | |
| AGCCAATACAGTTGTGATCT+AGG | - | chr7.2:33321698-33321717 | None:intergenic | 40.0% | |
| AGTCTATGAAGCTCACTATG+AGG | + | chr7.2:33319588-33319607 | MS.gene42891:intron | 40.0% | |
| ATCTCATTGCACCCAGAATA+AGG | - | chr7.2:33319283-33319302 | None:intergenic | 40.0% | |
| ATTCCAAACACGGAAATCCA+TGG | + | chr7.2:33321234-33321253 | MS.gene42891:CDS | 40.0% | |
| CAAATATGCCACACCAAAAC+AGG | + | chr7.2:33319735-33319754 | MS.gene42891:intron | 40.0% | |
| CAATACAGTTGTGATCTAGG+AGG | - | chr7.2:33321695-33321714 | None:intergenic | 40.0% | |
| CACCTACATCTTGTAATGTG+TGG | - | chr7.2:33319147-33319166 | None:intergenic | 40.0% | |
| CCAATATAGATAGTCCCCAT+GGG | + | chr7.2:33320036-33320055 | MS.gene42891:intron | 40.0% | |
| CCAGAATGTGAAGTGTATTC+AGG | + | chr7.2:33321617-33321636 | MS.gene42891:CDS | 40.0% | |
| CCTGAATACACTTCACATTC+TGG | - | chr7.2:33321620-33321639 | None:intergenic | 40.0% | |
| CTCACAAAGAATTCAGAGCA+AGG | + | chr7.2:33318601-33318620 | MS.gene42891:CDS | 40.0% | |
| CTCCTAGATCACAACTGTAT+TGG | + | chr7.2:33321693-33321712 | MS.gene42891:CDS | 40.0% | |
| GATTATAGTGACTAGGGGAA+GGG | - | chr7.2:33319218-33319237 | None:intergenic | 40.0% | |
| GCATTTCTCACCTTACAAAC+TGG | + | chr7.2:33319359-33319378 | MS.gene42891:intron | 40.0% | |
| TCCTCAATCATCGTCAAGTA+CGG | + | chr7.2:33318657-33318676 | MS.gene42891:intron | 40.0% | |
| TCCTGATCGCATATCTAAGA+TGG | + | chr7.2:33319086-33319105 | MS.gene42891:intron | 40.0% | |
| TGATACCATATCTCGAAAGC+TGG | + | chr7.2:33320767-33320786 | MS.gene42891:CDS | 40.0% | |
| TTAGATTGGGTGTTAGCTAG+GGG | + | chr7.2:33318975-33318994 | MS.gene42891:intron | 40.0% | |
| ! | ACACTTTTCATGCCGAAATC+TGG | - | chr7.2:33319871-33319890 | None:intergenic | 40.0% |
| ! | ACTTTTCATGCCGAAATCTG+GGG | - | chr7.2:33319869-33319888 | None:intergenic | 40.0% |
| ! | CACTTTTCATGCCGAAATCT+GGG | - | chr7.2:33319870-33319889 | None:intergenic | 40.0% |
| ! | GGAGAGATGTAATGATGATG+AGG | - | chr7.2:33319956-33319975 | None:intergenic | 40.0% |
| ! | GTGGCATATTTGTCGTCTTT+TGG | - | chr7.2:33319727-33319746 | None:intergenic | 40.0% |
| ! | GTTTGGTTGTTTCGTTGTGT+GGG | + | chr7.2:33320232-33320251 | MS.gene42891:intron | 40.0% |
| ! | TACACCTATCTCAGCCTTAT+CGG | - | chr7.2:33321306-33321325 | None:intergenic | 40.0% |
| ! | TAGATCACAACTGTATTGGC+TGG | + | chr7.2:33321697-33321716 | MS.gene42891:CDS | 40.0% |
| !! | TGTTGACTTCAGCGAACTTT+CGG | + | chr7.2:33320734-33320753 | MS.gene42891:CDS | 40.0% |
| !!! | CACCTTACAAACTGGTTTTG+TGG | + | chr7.2:33319367-33319386 | MS.gene42891:intron | 40.0% |
| !!! | CCTTACAAACTGGTTTTGTG+GGG | + | chr7.2:33319369-33319388 | MS.gene42891:intron | 40.0% |
| AAGGTACATGCCCCAGATTT+CGG | + | chr7.2:33319856-33319875 | MS.gene42891:intron | 45.0% | |
| AATTCAGAGCAAGGGAGTGA+CGG | + | chr7.2:33318610-33318629 | MS.gene42891:CDS | 45.0% | |
| ACCGTACTTGACGATGATTG+AGG | - | chr7.2:33318661-33318680 | None:intergenic | 45.0% | |
| ACCTATCTGTGTTCGTCTAG+TGG | + | chr7.2:33320987-33321006 | MS.gene42891:CDS | 45.0% | |
| ACTACTTGGAGCTTCCTTCA+TGG | + | chr7.2:33319241-33319260 | MS.gene42891:intron | 45.0% | |
| AGTCCATGGATTTCCGTGTT+TGG | - | chr7.2:33321240-33321259 | None:intergenic | 45.0% | |
| CATTGCACCCAGAATAAGGA+AGG | - | chr7.2:33319279-33319298 | None:intergenic | 45.0% | |
| CCCATGGGGACTATCTATAT+TGG | - | chr7.2:33320039-33320058 | None:intergenic | 45.0% | |
| CCCCACAAAACCAGTTTGTA+AGG | - | chr7.2:33319372-33319391 | None:intergenic | 45.0% | |
| CGATTATAGTGACTAGGGGA+AGG | - | chr7.2:33319219-33319238 | None:intergenic | 45.0% | |
| CTTTCATATCCCCACTTTCC+CGG | - | chr7.2:33321566-33321585 | None:intergenic | 45.0% | |
| GCAGTTGAACCATGACTGAT+AGG | + | chr7.2:33318877-33318896 | MS.gene42891:intron | 45.0% | |
| GGCAAAAAGGATGGTCCATT+GGG | - | chr7.2:33321377-33321396 | None:intergenic | 45.0% | |
| TAAGCTTCATCCATCCACCA+GGG | + | chr7.2:33320002-33320021 | MS.gene42891:intron | 45.0% | |
| TATGATACTTGCAAGGGAGG+TGG | - | chr7.2:33319977-33319996 | None:intergenic | 45.0% | |
| TCCAACGCCTTCCTTATTCT+GGG | + | chr7.2:33319269-33319288 | MS.gene42891:intron | 45.0% | |
| TCCACTAGACGAACACAGAT+AGG | - | chr7.2:33320991-33321010 | None:intergenic | 45.0% | |
| TGGCAAAAAGGATGGTCCAT+TGG | - | chr7.2:33321378-33321397 | None:intergenic | 45.0% | |
| TTAAGCTTCATCCATCCACC+AGG | + | chr7.2:33320001-33320020 | MS.gene42891:intron | 45.0% | |
| TTCGTTGTGTGGGATTGTGA+TGG | + | chr7.2:33320242-33320261 | MS.gene42891:intron | 45.0% | |
| ! | CGTTTGGTTGTTTCGTTGTG+TGG | + | chr7.2:33320231-33320250 | MS.gene42891:intron | 45.0% |
| ! | GTGACGGAGATGATTCTAAG+AGG | + | chr7.2:33318626-33318645 | MS.gene42891:CDS | 45.0% |
| ! | TTGTGATGGGAAGCTTCTTG+TGG | + | chr7.2:33321409-33321428 | MS.gene42891:CDS | 45.0% |
| ! | TTTCTGGTGTTTGCAAGGAG+TGG | + | chr7.2:33320811-33320830 | MS.gene42891:intron | 45.0% |
| !! | CACAACTGTATTGGCTGGAT+TGG | + | chr7.2:33321702-33321721 | MS.gene42891:CDS | 45.0% |
| !! | CGGAAATCCATGGACTGTTT+TGG | + | chr7.2:33321244-33321263 | MS.gene42891:CDS | 45.0% |
| !! | TAGTGGGGTGTTTCCTGTTT+TGG | - | chr7.2:33319751-33319770 | None:intergenic | 45.0% |
| !! | TATTGGTTCTAAGAGACCCC+TGG | - | chr7.2:33320022-33320041 | None:intergenic | 45.0% |
| !!! | ACAAACTGGTTTTGTGGGGT+TGG | + | chr7.2:33319373-33319392 | MS.gene42891:intron | 45.0% |
| !!! | CAAACTGGTTTTGTGGGGTT+GGG | + | chr7.2:33319374-33319393 | MS.gene42891:intron | 45.0% |
| !! | AAATTTGAAAAAATATAAAT+TGG | + | chr7.2:33318837-33318856 | MS.gene42891:intron | 5.0% |
| !! | AATTTGAAAAAATATAAATT+GGG | + | chr7.2:33318838-33318857 | MS.gene42891:intron | 5.0% |
| AAGCTTCATCCATCCACCAG+GGG | + | chr7.2:33320003-33320022 | MS.gene42891:intron | 50.0% | |
| ATTCTTAGGCATGCAAGCCC+TGG | + | chr7.2:33319549-33319568 | MS.gene42891:intron | 50.0% | |
| ATTGCTCAGCGCATGGCATT+TGG | - | chr7.2:33321543-33321562 | None:intergenic | 50.0% | |
| CTCACCGATAAGGCTGAGAT+AGG | + | chr7.2:33321299-33321318 | MS.gene42891:CDS | 50.0% | |
| CTCCAACGCCTTCCTTATTC+TGG | + | chr7.2:33319268-33319287 | MS.gene42891:intron | 50.0% | |
| GTGCAAAGTCGTGTACGTGA+GGG | + | chr7.2:33319164-33319183 | MS.gene42891:intron | 50.0% | |
| TGCAAAGTCGTGTACGTGAG+GGG | + | chr7.2:33319165-33319184 | MS.gene42891:intron | 50.0% | |
| TTGCTCAGCGCATGGCATTT+GGG | - | chr7.2:33321542-33321561 | None:intergenic | 50.0% | |
| ! | ACCCAGAATAAGGAAGGCGT+TGG | - | chr7.2:33319273-33319292 | None:intergenic | 50.0% |
| !! | CAGAATAAGGAAGGCGTTGG+AGG | - | chr7.2:33319270-33319289 | None:intergenic | 50.0% |
| !!! | GGGTGTTTCCTGTTTTGGTG+TGG | - | chr7.2:33319746-33319765 | None:intergenic | 50.0% |
| ATGCCATGCGCTGAGCAATC+CGG | + | chr7.2:33321544-33321563 | MS.gene42891:CDS | 55.0% | |
| CTGAGCAATCCGGGAAAGTG+GGG | + | chr7.2:33321554-33321573 | MS.gene42891:CDS | 55.0% | |
| CTGGTGTTTGCAAGGAGTGG+AGG | + | chr7.2:33320814-33320833 | MS.gene42891:intron | 55.0% | |
| GCTGAGCAATCCGGGAAAGT+GGG | + | chr7.2:33321553-33321572 | MS.gene42891:CDS | 55.0% | |
| GGAAGTCGATGACCATCAGC+TGG | - | chr7.2:33321674-33321693 | None:intergenic | 55.0% | |
| GGTGCAAAGTCGTGTACGTG+AGG | + | chr7.2:33319163-33319182 | MS.gene42891:intron | 55.0% | |
| TCTAAGAGACCCCTGGTGGA+TGG | - | chr7.2:33320015-33320034 | None:intergenic | 55.0% | |
| ! | CTAGGGGAAGGGCGCAATTA+AGG | - | chr7.2:33319207-33319226 | None:intergenic | 55.0% |
| !! | GCGCGGTAAGCTCGTTTTTC+AGG | - | chr7.2:33320942-33320961 | None:intergenic | 55.0% |
| !! | TGGTTCTAAGAGACCCCTGG+TGG | - | chr7.2:33320019-33320038 | None:intergenic | 55.0% |
| CGCTGAGCAATCCGGGAAAG+TGG | + | chr7.2:33321552-33321571 | MS.gene42891:CDS | 60.0% | |
| TGCCATGCGCTGAGCAATCC+GGG | + | chr7.2:33321545-33321564 | MS.gene42891:CDS | 60.0% | |
| TTCCCGGATTGCTCAGCGCA+TGG | - | chr7.2:33321550-33321569 | None:intergenic | 60.0% | |
| ! | GGCGTTGGAGGTTGCCATGA+AGG | - | chr7.2:33319258-33319277 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 33318583 | 33321772 | 33318583 | ID=MS.gene42891 |
| chr7.2 | mRNA | 33318583 | 33321772 | 33318583 | ID=MS.gene42891.t1;Parent=MS.gene42891 |
| chr7.2 | exon | 33318583 | 33318673 | 33318583 | ID=MS.gene42891.t1.exon1;Parent=MS.gene42891.t1 |
| chr7.2 | CDS | 33318583 | 33318673 | 33318583 | ID=cds.MS.gene42891.t1;Parent=MS.gene42891.t1 |
| chr7.2 | exon | 33320715 | 33320829 | 33320715 | ID=MS.gene42891.t1.exon2;Parent=MS.gene42891.t1 |
| chr7.2 | CDS | 33320715 | 33320829 | 33320715 | ID=cds.MS.gene42891.t1;Parent=MS.gene42891.t1 |
| chr7.2 | exon | 33320935 | 33321026 | 33320935 | ID=MS.gene42891.t1.exon3;Parent=MS.gene42891.t1 |
| chr7.2 | CDS | 33320935 | 33321026 | 33320935 | ID=cds.MS.gene42891.t1;Parent=MS.gene42891.t1 |
| chr7.2 | exon | 33321147 | 33321772 | 33321147 | ID=MS.gene42891.t1.exon4;Parent=MS.gene42891.t1 |
| chr7.2 | CDS | 33321147 | 33321772 | 33321147 | ID=cds.MS.gene42891.t1;Parent=MS.gene42891.t1 |
| Gene Sequence |
| Protein sequence |
