Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09504.t1 | RHN48079.1 | 78.5 | 260 | 30 | 3 | 1 | 246 | 230 | 477 | 1.40E-107 | 399.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09504.t1 | O04408 | 60.8 | 260 | 76 | 3 | 1 | 246 | 328 | 575 | 1.8e-84 | 313.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09504.t1 | A0A396H482 | 78.5 | 260 | 30 | 3 | 1 | 246 | 230 | 477 | 9.8e-108 | 399.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene09504 | 0.826359 | 2.83E-54 | -1.69E-46 |
| MS.gene049701 | MS.gene09504 | 0.806109 | 9.65E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene09504 | 0.829733 | 4.36E-55 | -1.69E-46 |
| MS.gene051710 | MS.gene09504 | 0.804514 | 2.08E-49 | -1.69E-46 |
| MS.gene052447 | MS.gene09504 | 0.817996 | 2.47E-52 | -1.69E-46 |
| MS.gene05404 | MS.gene09504 | 0.843888 | 1.06E-58 | -1.69E-46 |
| MS.gene05415 | MS.gene09504 | 0.801354 | 9.37E-49 | -1.69E-46 |
| MS.gene054174 | MS.gene09504 | 0.837256 | 5.79E-57 | -1.69E-46 |
| MS.gene054175 | MS.gene09504 | 0.840689 | 7.47E-58 | -1.69E-46 |
| MS.gene05435 | MS.gene09504 | 0.824112 | 9.63E-54 | -1.69E-46 |
| MS.gene054484 | MS.gene09504 | 0.831866 | 1.31E-55 | -1.69E-46 |
| MS.gene055056 | MS.gene09504 | 0.854154 | 1.49E-61 | -1.69E-46 |
| MS.gene055058 | MS.gene09504 | 0.820115 | 8.13E-53 | -1.69E-46 |
| MS.gene05531 | MS.gene09504 | 0.811737 | 6.03E-51 | -1.69E-46 |
| MS.gene05762 | MS.gene09504 | 0.816713 | 4.80E-52 | -1.69E-46 |
| MS.gene058515 | MS.gene09504 | 0.834582 | 2.76E-56 | -1.69E-46 |
| MS.gene05925 | MS.gene09504 | 0.808453 | 3.07E-50 | -1.69E-46 |
| MS.gene059276 | MS.gene09504 | 0.85497 | 8.63E-62 | -1.69E-46 |
| MS.gene059584 | MS.gene09504 | 0.808859 | 2.52E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09504.t1 | MTR_7g094970 | 78.077 | 260 | 31 | 3 | 1 | 246 | 209 | 456 | 6.54e-136 | 399 |
| MS.gene09504.t1 | MTR_5g030050 | 73.077 | 260 | 33 | 3 | 1 | 246 | 1 | 237 | 2.70e-127 | 365 |
| MS.gene09504.t1 | MTR_7g011663 | 63.462 | 260 | 69 | 3 | 1 | 246 | 347 | 594 | 2.74e-108 | 332 |
| MS.gene09504.t1 | MTR_7g011770 | 57.143 | 259 | 85 | 3 | 2 | 246 | 244 | 490 | 3.11e-89 | 280 |
| MS.gene09504.t1 | MTR_8g073530 | 73.548 | 155 | 16 | 2 | 68 | 208 | 35 | 178 | 1.98e-71 | 221 |
| MS.gene09504.t1 | MTR_0042s0040 | 56.154 | 130 | 21 | 4 | 99 | 211 | 32 | 142 | 5.77e-32 | 117 |
| MS.gene09504.t1 | MTR_3g058160 | 31.618 | 272 | 133 | 14 | 1 | 248 | 66 | 308 | 1.90e-24 | 103 |
| MS.gene09504.t1 | MTR_3g058160 | 30.882 | 272 | 135 | 13 | 1 | 248 | 257 | 499 | 2.14e-24 | 103 |
| MS.gene09504.t1 | MTR_3g058160 | 30.882 | 272 | 135 | 13 | 1 | 248 | 270 | 512 | 2.28e-24 | 103 |
| MS.gene09504.t1 | MTR_3g058160 | 30.882 | 272 | 135 | 13 | 1 | 248 | 277 | 519 | 2.40e-24 | 102 |
| MS.gene09504.t1 | MTR_2g064295 | 30.882 | 272 | 135 | 13 | 1 | 248 | 257 | 499 | 4.42e-23 | 99.4 |
| MS.gene09504.t1 | MTR_3g058160 | 29.352 | 293 | 133 | 14 | 1 | 248 | 277 | 540 | 6.26e-22 | 95.9 |
| MS.gene09504.t1 | MTR_3g034810 | 57.831 | 83 | 8 | 2 | 178 | 246 | 7 | 76 | 2.07e-20 | 84.3 |
| MS.gene09504.t1 | MTR_2g081980 | 29.412 | 221 | 124 | 7 | 4 | 219 | 71 | 264 | 1.54e-18 | 85.9 |
| MS.gene09504.t1 | MTR_8g007515 | 27.935 | 247 | 148 | 8 | 3 | 245 | 70 | 290 | 6.57e-16 | 77.8 |
| MS.gene09504.t1 | MTR_4g045810 | 26.744 | 258 | 148 | 12 | 3 | 251 | 97 | 322 | 9.24e-15 | 74.3 |
| MS.gene09504.t1 | MTR_4g048460 | 28.112 | 249 | 145 | 10 | 3 | 246 | 78 | 297 | 1.47e-14 | 73.9 |
| MS.gene09504.t1 | MTR_4g048460 | 28.112 | 249 | 145 | 10 | 3 | 246 | 78 | 297 | 1.61e-14 | 73.6 |
| MS.gene09504.t1 | MTR_4g081460 | 26.908 | 249 | 148 | 9 | 3 | 246 | 79 | 298 | 7.55e-14 | 71.6 |
| MS.gene09504.t1 | MTR_2g082060 | 29.126 | 206 | 116 | 7 | 4 | 205 | 78 | 257 | 1.80e-13 | 70.5 |
| MS.gene09504.t1 | MTR_2g064425 | 29.670 | 182 | 88 | 6 | 3 | 178 | 107 | 254 | 3.28e-13 | 69.7 |
| MS.gene09504.t1 | MTR_2g064425 | 29.670 | 182 | 88 | 6 | 3 | 178 | 107 | 254 | 5.04e-13 | 68.9 |
| MS.gene09504.t1 | MTR_5g073200 | 27.490 | 251 | 145 | 9 | 3 | 246 | 65 | 285 | 5.26e-13 | 69.3 |
| MS.gene09504.t1 | MTR_6g039440 | 28.704 | 216 | 125 | 7 | 3 | 216 | 70 | 258 | 5.48e-13 | 69.3 |
| MS.gene09504.t1 | MTR_5g073260 | 30.000 | 210 | 112 | 8 | 3 | 206 | 68 | 248 | 6.47e-13 | 68.9 |
| MS.gene09504.t1 | MTR_2g089120 | 28.881 | 277 | 144 | 13 | 3 | 269 | 90 | 323 | 8.18e-13 | 68.6 |
| MS.gene09504.t1 | MTR_3g464190 | 25.818 | 275 | 159 | 9 | 3 | 269 | 73 | 310 | 2.12e-12 | 67.4 |
| MS.gene09504.t1 | MTR_5g062230 | 27.982 | 218 | 128 | 7 | 1 | 216 | 68 | 258 | 2.76e-12 | 67.0 |
| MS.gene09504.t1 | MTR_2g089130 | 31.193 | 218 | 110 | 11 | 3 | 216 | 90 | 271 | 8.57e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09504.t1 | AT4G02780 | 57.308 | 260 | 85 | 3 | 1 | 246 | 332 | 579 | 1.02e-94 | 296 |
| MS.gene09504.t1 | AT1G79460 | 27.239 | 268 | 149 | 10 | 1 | 248 | 275 | 516 | 3.32e-17 | 82.0 |
| MS.gene09504.t1 | AT4G16740 | 26.939 | 245 | 153 | 10 | 3 | 244 | 80 | 301 | 2.26e-15 | 75.9 |
| MS.gene09504.t1 | AT4G16740 | 26.531 | 245 | 154 | 9 | 3 | 244 | 80 | 301 | 2.36e-15 | 75.9 |
| MS.gene09504.t1 | AT4G16740 | 26.531 | 245 | 154 | 9 | 3 | 244 | 80 | 301 | 2.36e-15 | 75.9 |
| MS.gene09504.t1 | AT4G16740 | 26.531 | 245 | 154 | 9 | 3 | 244 | 80 | 301 | 2.55e-15 | 76.3 |
Find 64 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACGTTTCTTTGTTAAATATT+TGG | 0.182713 | 6.4:+26213253 | None:intergenic |
| ATTAAGATTCTTACCTATAA+AGG | 0.194854 | 6.4:+26212621 | None:intergenic |
| CTAATGAGCTCTTAGATAAA+TGG | 0.260117 | 6.4:-26213226 | MS.gene09504:CDS |
| GGTAAATTCTTCTGCTTTGC+CGG | 0.277313 | 6.4:-26213377 | MS.gene09504:CDS |
| CAGCTAAATCAAGCTGTTAC+TGG | 0.356233 | 6.4:-26213353 | MS.gene09504:CDS |
| TTAAGATTCTTACCTATAAA+GGG | 0.356980 | 6.4:+26212622 | None:intergenic |
| GTGGGTTATGCTCTGGCCTC+TGG | 0.358423 | 6.4:-26212735 | MS.gene09504:CDS |
| CACCTCGCCAGATAAATCTT+TGG | 0.359251 | 6.4:+26213196 | None:intergenic |
| GTAAAATCTTGTCTCCAATC+TGG | 0.363747 | 6.4:+26212688 | None:intergenic |
| GGACTCAGAAAGGTATTTGC+TGG | 0.386388 | 6.4:-26213836 | MS.gene09504:CDS |
| GGATTGGTAAGACCCTTTAT+AGG | 0.387836 | 6.4:-26212634 | MS.gene09504:intron |
| ATCATAACCAAAGATTTATC+TGG | 0.403663 | 6.4:-26213203 | MS.gene09504:CDS |
| GCACTTGAGAAGCTCTATAT+AGG | 0.408001 | 6.4:+26213321 | None:intergenic |
| CGAACTTACCGGATGAAACT+TGG | 0.415508 | 6.4:+26213742 | None:intergenic |
| CTTGGTAGCCATGCAACCTT+AGG | 0.428827 | 6.4:+26213760 | None:intergenic |
| GTCAGTATTCAAGAAGTTGT+TGG | 0.446480 | 6.4:-26212993 | MS.gene09504:CDS |
| TTTCACCACCATAATGTTCA+AGG | 0.449652 | 6.4:+26212666 | None:intergenic |
| TTTAGATATTGGACTCAGAA+AGG | 0.454758 | 6.4:-26213846 | MS.gene09504:intron |
| AGCAATGCATTATGATGAAT+GGG | 0.462897 | 6.4:-26212386 | MS.gene09504:CDS |
| ATGGTGGTGAAATTGATGTT+TGG | 0.463518 | 6.4:-26212655 | MS.gene09504:CDS |
| AAGCAATGCATTATGATGAA+TGG | 0.470599 | 6.4:-26212387 | MS.gene09504:CDS |
| GTTGTTGCACGTGTCTATGA+AGG | 0.471516 | 6.4:-26211208 | MS.gene09504:CDS |
| TCTGTAGGTGGGTTATGCTC+TGG | 0.479591 | 6.4:-26212742 | MS.gene09504:intron |
| TAAAATCTTGTCTCCAATCT+GGG | 0.499279 | 6.4:+26212689 | None:intergenic |
| AACACATGTGGGTTGTGGAT+TGG | 0.505021 | 6.4:-26214177 | None:intergenic |
| GTATGCTAGCTTACCCAGAT+TGG | 0.508010 | 6.4:-26212702 | MS.gene09504:CDS |
| AACAGCTTGATTTAGCTGTC+CGG | 0.512541 | 6.4:+26213358 | None:intergenic |
| CATGGCTACCAAGTTTCATC+CGG | 0.513401 | 6.4:-26213750 | MS.gene09504:intron |
| GATATAGATGATACAACAAT+GGG | 0.515944 | 6.4:-26213792 | MS.gene09504:CDS |
| ATTTGAACACATGTGGGTTG+TGG | 0.521862 | 6.4:-26214182 | None:intergenic |
| GGTGAAATTGATGTTTGGAT+TGG | 0.524816 | 6.4:-26212650 | MS.gene09504:CDS |
| TTCCAATATTAGGTGGTACA+TGG | 0.528309 | 6.4:-26212275 | MS.gene09504:intron |
| CAATGGGATTTAGAATCCTA+AGG | 0.535611 | 6.4:-26213776 | MS.gene09504:CDS |
| GTGGATTGGCTAGAGCGCCT+TGG | 0.538106 | 6.4:-26214163 | MS.gene09504:CDS |
| GACTCAGAAAGGTATTTGCT+GGG | 0.538703 | 6.4:-26213835 | MS.gene09504:CDS |
| TACATGGAATCAGAACTAGA+AGG | 0.549958 | 6.4:-26212259 | MS.gene09504:CDS |
| TCTCTCTCTAGAGACCTCTC+AGG | 0.554905 | 6.4:+26212172 | None:intergenic |
| TTCAAGCATTCTGAGAAAAG+TGG | 0.555226 | 6.4:-26213398 | MS.gene09504:CDS |
| ATGAAGCACTTGCCCTTCGT+TGG | 0.557769 | 6.4:+26211252 | None:intergenic |
| GAAAATATCTCGAAATTCCA+AGG | 0.560765 | 6.4:+26214146 | None:intergenic |
| TAGAAAGTAAGGCAAAGCAT+TGG | 0.568603 | 6.4:+26211165 | None:intergenic |
| TTTAGAATCCTAAGGTTGCA+TGG | 0.570576 | 6.4:-26213768 | MS.gene09504:CDS |
| GCAAGTGCTTCATCCAAGGT+GGG | 0.577631 | 6.4:-26211242 | MS.gene09504:CDS |
| AGTATTCAAGAAGTTGTTGG+AGG | 0.583916 | 6.4:-26212990 | MS.gene09504:CDS |
| TCAAGAAGAGAAGATTCTTG+AGG | 0.585020 | 6.4:-26213294 | MS.gene09504:CDS |
| GGCAAAGCATTGGAGCATGA+TGG | 0.587536 | 6.4:+26211175 | None:intergenic |
| ACTAAAAGTTGACCCCACCT+TGG | 0.590986 | 6.4:+26211229 | None:intergenic |
| TTGCTGGGCAAGAAATTCAG+AGG | 0.596066 | 6.4:-26213820 | MS.gene09504:CDS |
| AACCAAAGATTTATCTGGCG+AGG | 0.596110 | 6.4:-26213198 | MS.gene09504:intron |
| AAGGGCAAGTGCTTCATCCA+AGG | 0.596742 | 6.4:-26211246 | MS.gene09504:CDS |
| AGATATAGATGATACAACAA+TGG | 0.599353 | 6.4:-26213793 | MS.gene09504:CDS |
| TCTGGCCTCTGGATGTGCCA+TGG | 0.600395 | 6.4:-26212724 | MS.gene09504:CDS |
| ACATGGAATCAGAACTAGAA+GGG | 0.601153 | 6.4:-26212258 | MS.gene09504:CDS |
| GGCAAGTGCTTCATCCAAGG+TGG | 0.605732 | 6.4:-26211243 | MS.gene09504:CDS |
| GTATTCAAGAAGTTGTTGGA+GGG | 0.636664 | 6.4:-26212989 | MS.gene09504:intron |
| CCAGTTCAGACACCAACGAA+GGG | 0.640787 | 6.4:-26211264 | MS.gene09504:intron |
| CAAGTGCTTCATCCAAGGTG+GGG | 0.645554 | 6.4:-26211241 | MS.gene09504:CDS |
| ACAGCATATTTGAGCCTGAG+AGG | 0.649195 | 6.4:-26212186 | MS.gene09504:intron |
| AATGGGAAGAAGAAATCCAA+AGG | 0.652955 | 6.4:-26212369 | MS.gene09504:intron |
| GCATACCATGGCACATCCAG+AGG | 0.654412 | 6.4:+26212719 | None:intergenic |
| CTGGGTAAGCTAGCATACCA+TGG | 0.665423 | 6.4:+26212707 | None:intergenic |
| GTTTGCTTATTATGTAGCAG+CGG | 0.668731 | 6.4:-26212209 | MS.gene09504:CDS |
| TCCAGTTCAGACACCAACGA+AGG | 0.673481 | 6.4:-26211265 | MS.gene09504:intron |
| AGTCTGTGAATGATGTGTCA+AGG | 0.702483 | 6.4:-26214108 | MS.gene09504:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGAAAATTTTAGATAT+TGG | - | chr6.4:26211477-26211496 | MS.gene09504:intron | 10.0% |
| !!! | ATTTTTCTATTTATTTTGAT+AGG | - | chr6.4:26212862-26212881 | MS.gene09504:intron | 10.0% |
| !!! | TTTTTATTTTTTCAAGTATT+AGG | + | chr6.4:26213524-26213543 | None:intergenic | 10.0% |
| !! | AAACATGGTTAAAATTTATA+CGG | + | chr6.4:26212439-26212458 | None:intergenic | 15.0% |
| !! | ATATATGATAATCTTCATAA+AGG | - | chr6.4:26211870-26211889 | MS.gene09504:intron | 15.0% |
| !!! | ATTTGGATTTTAAGAATTAT+GGG | + | chr6.4:26212213-26212232 | None:intergenic | 15.0% |
| !!! | TTTTTTAACTTCAAATAACA+GGG | - | chr6.4:26213767-26213786 | MS.gene09504:CDS | 15.0% |
| !!! | TTTTTTTAACTTCAAATAAC+AGG | - | chr6.4:26213766-26213785 | MS.gene09504:CDS | 15.0% |
| !! | ACGTTTCTTTGTTAAATATT+TGG | + | chr6.4:26212084-26212103 | None:intergenic | 20.0% |
| !! | ATTAAGATTCTTACCTATAA+AGG | + | chr6.4:26212716-26212735 | None:intergenic | 20.0% |
| !! | GTTAAAAAAATACTCATCAT+TGG | + | chr6.4:26213756-26213775 | None:intergenic | 20.0% |
| !! | TGTTTGATATATTTAAACCT+AGG | - | chr6.4:26213558-26213577 | MS.gene09504:intron | 20.0% |
| !! | TTAAGATTCTTACCTATAAA+GGG | + | chr6.4:26212715-26212734 | None:intergenic | 20.0% |
| !! | TTATGAAAATATGTTGATGT+AGG | + | chr6.4:26213643-26213662 | None:intergenic | 20.0% |
| !! | TTGTAAAATACTCATCATAT+TGG | + | chr6.4:26213708-26213727 | None:intergenic | 20.0% |
| !!! | AAATTTTAACCATGTTTAGA+AGG | - | chr6.4:26212442-26212461 | MS.gene09504:intron | 20.0% |
| !!! | ATCTAGTTTTTCTAATTGTA+TGG | + | chr6.4:26213922-26213941 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTCCTTCTAAACA+TGG | + | chr6.4:26212454-26212473 | None:intergenic | 20.0% |
| !!! | CAAAAAAACACAATTTTCTT+TGG | + | chr6.4:26212294-26212313 | None:intergenic | 20.0% |
| !!! | CAAAGAAAATTGTGTTTTTT+TGG | - | chr6.4:26212292-26212311 | MS.gene09504:intron | 20.0% |
| !!! | GATTTGGATTTTAAGAATTA+TGG | + | chr6.4:26212214-26212233 | None:intergenic | 20.0% |
| !!! | TTATGAATTGTTGTTAGATA+TGG | + | chr6.4:26213495-26213514 | None:intergenic | 20.0% |
| !!! | TTTGGATTTTAAGAATTATG+GGG | + | chr6.4:26212212-26212231 | None:intergenic | 20.0% |
| ! | AAGAGTAAAATGCGAAATTA+AGG | - | chr6.4:26211634-26211653 | MS.gene09504:intron | 25.0% |
| ! | AATGTTATGTTAGATTGTTG+TGG | + | chr6.4:26213951-26213970 | None:intergenic | 25.0% |
| ! | ACTTCACTAAAACTATAAAG+TGG | - | chr6.4:26211745-26211764 | MS.gene09504:intron | 25.0% |
| ! | AGAGTTCAAACTAAATTGTT+TGG | - | chr6.4:26213843-26213862 | MS.gene09504:CDS | 25.0% |
| ! | AGATATAGATGATACAACAA+TGG | - | chr6.4:26211541-26211560 | MS.gene09504:intron | 25.0% |
| ! | ATATTTGGCTGAAAAATTCT+TGG | + | chr6.4:26212069-26212088 | None:intergenic | 25.0% |
| ! | ATCATAACCAAAGATTTATC+TGG | - | chr6.4:26212131-26212150 | MS.gene09504:intron | 25.0% |
| ! | ATCTAACATAACATTACTAG+TGG | - | chr6.4:26213956-26213975 | MS.gene09504:intron | 25.0% |
| ! | ATTTCAAAGATGAAGAAACT+AGG | - | chr6.4:26213231-26213250 | MS.gene09504:CDS | 25.0% |
| ! | CTTCACTAAAACTATAAAGT+GGG | - | chr6.4:26211746-26211765 | MS.gene09504:intron | 25.0% |
| ! | GATATAGATGATACAACAAT+GGG | - | chr6.4:26211542-26211561 | MS.gene09504:intron | 25.0% |
| ! | GTGAATAATCATATAGAAGA+TGG | + | chr6.4:26211412-26211431 | None:intergenic | 25.0% |
| ! | TAAACATCATTGTTCATGTA+CGG | + | chr6.4:26212891-26212910 | None:intergenic | 25.0% |
| ! | TAATGATGCATTCCAATATT+AGG | - | chr6.4:26213049-26213068 | MS.gene09504:intron | 25.0% |
| ! | TTCTTAAAATCCAAATCCAT+CGG | - | chr6.4:26212217-26212236 | MS.gene09504:CDS | 25.0% |
| ! | TTTCATACTACATACAACAA+AGG | - | chr6.4:26211800-26211819 | MS.gene09504:intron | 25.0% |
| !! | AGATTTTACCTTGAACATTA+TGG | - | chr6.4:26212660-26212679 | MS.gene09504:CDS | 25.0% |
| !! | ATATTTTCAACAAGAGATCA+AGG | - | chr6.4:26211203-26211222 | MS.gene09504:CDS | 25.0% |
| !! | GCATTTTACTCTTTATAAGT+TGG | + | chr6.4:26211627-26211646 | None:intergenic | 25.0% |
| !!! | AACAATTTAGTTTGAACTCT+TGG | + | chr6.4:26213843-26213862 | None:intergenic | 25.0% |
| !!! | ACAATTTAGTTTGAACTCTT+GGG | + | chr6.4:26213842-26213861 | None:intergenic | 25.0% |
| !!! | AGAGTTTGTTACAATGTTAA+TGG | + | chr6.4:26212573-26212592 | None:intergenic | 25.0% |
| !!! | GAGTTTGTTACAATGTTAAT+GGG | + | chr6.4:26212572-26212591 | None:intergenic | 25.0% |
| !!! | TTACTGATTTCAAAGTTTAC+AGG | - | chr6.4:26212177-26212196 | MS.gene09504:intron | 25.0% |
| AAGAAGAAATCCAAAGGTAA+GGG | - | chr6.4:26212971-26212990 | MS.gene09504:intron | 30.0% | |
| AAGCAATGCATTATGATGAA+TGG | - | chr6.4:26212947-26212966 | MS.gene09504:intron | 30.0% | |
| AGCAATGCATTATGATGAAT+GGG | - | chr6.4:26212948-26212967 | MS.gene09504:intron | 30.0% | |
| ATAATAAAGGCAGTATGTTC+TGG | - | chr6.4:26213805-26213824 | MS.gene09504:CDS | 30.0% | |
| ATATTTAAACCTAGGCTGAT+TGG | - | chr6.4:26213566-26213585 | MS.gene09504:intron | 30.0% | |
| ATGAGTCATACATAATTCAG+TGG | + | chr6.4:26212400-26212419 | None:intergenic | 30.0% | |
| ATGTGATTCTCATTGTTTAG+TGG | + | chr6.4:26213875-26213894 | None:intergenic | 30.0% | |
| CATTTCCTTACCGATAATAA+AGG | - | chr6.4:26213792-26213811 | MS.gene09504:CDS | 30.0% | |
| CTAATGAGCTCTTAGATAAA+TGG | - | chr6.4:26212108-26212127 | MS.gene09504:intron | 30.0% | |
| GAAAATATCTCGAAATTCCA+AGG | + | chr6.4:26211191-26211210 | None:intergenic | 30.0% | |
| GAACATACTGCCTTTATTAT+CGG | + | chr6.4:26213805-26213824 | None:intergenic | 30.0% | |
| GTTGTAATACAAACTTTGCA+AGG | + | chr6.4:26212920-26212939 | None:intergenic | 30.0% | |
| TAAAATCTTGTCTCCAATCT+GGG | + | chr6.4:26212648-26212667 | None:intergenic | 30.0% | |
| TGCAAGCAATATGAAAAGAA+AGG | + | chr6.4:26211844-26211863 | None:intergenic | 30.0% | |
| TGCATGTATACTTCTAAACA+AGG | - | chr6.4:26212319-26212338 | MS.gene09504:intron | 30.0% | |
| TTATTGCAGACATTTCTTAC+CGG | - | chr6.4:26212484-26212503 | MS.gene09504:intron | 30.0% | |
| TTCTAGTGGAAATGGATATT+GGG | + | chr6.4:26214022-26214041 | None:intergenic | 30.0% | |
| TTGAACACATCTGCAAAATT+AGG | + | chr6.4:26211921-26211940 | None:intergenic | 30.0% | |
| TTTAGATATTGGACTCAGAA+AGG | - | chr6.4:26211488-26211507 | MS.gene09504:intron | 30.0% | |
| ! | TAATTTTACATTGAACGTGC+TGG | - | chr6.4:26212732-26212751 | MS.gene09504:CDS | 30.0% |
| ! | TTTCTAGTGGAAATGGATAT+TGG | + | chr6.4:26214023-26214042 | None:intergenic | 30.0% |
| ! | TTTTACCTTGAACATTATGG+TGG | - | chr6.4:26212663-26212682 | MS.gene09504:CDS | 30.0% |
| !! | AGTTCTAAGCTATTAGGTAA+AGG | + | chr6.4:26212787-26212806 | None:intergenic | 30.0% |
| !! | GTACTTAGTTCTAAGCTATT+AGG | + | chr6.4:26212793-26212812 | None:intergenic | 30.0% |
| !! | TGTTTTATTACTGCATTCAC+CGG | + | chr6.4:26212506-26212525 | None:intergenic | 30.0% |
| !!! | GACGATTTTTTTGCACTTTT+GGG | - | chr6.4:26213387-26213406 | MS.gene09504:CDS | 30.0% |
| AATGGGAAGAAGAAATCCAA+AGG | - | chr6.4:26212965-26212984 | MS.gene09504:intron | 35.0% | |
| ACATGGAATCAGAACTAGAA+GGG | - | chr6.4:26213076-26213095 | MS.gene09504:intron | 35.0% | |
| AGTATTCAAGAAGTTGTTGG+AGG | - | chr6.4:26212344-26212363 | MS.gene09504:intron | 35.0% | |
| ATTCAAGCTACTAATCAAGG+TGG | + | chr6.4:26214050-26214069 | None:intergenic | 35.0% | |
| CATATAGAAGATGGTGCATT+TGG | + | chr6.4:26211403-26211422 | None:intergenic | 35.0% | |
| CATTGTAACAAACTCTCTGT+AGG | - | chr6.4:26212577-26212596 | MS.gene09504:intron | 35.0% | |
| GAAGAAGAAATCCAAAGGTA+AGG | - | chr6.4:26212970-26212989 | MS.gene09504:intron | 35.0% | |
| GGACATAAACTTGAGAAATG+AGG | + | chr6.4:26213622-26213641 | None:intergenic | 35.0% | |
| GGTGAAATTGATGTTTGGAT+TGG | - | chr6.4:26212684-26212703 | MS.gene09504:CDS | 35.0% | |
| GTAAAATCTTGTCTCCAATC+TGG | + | chr6.4:26212649-26212668 | None:intergenic | 35.0% | |
| GTATTCAAGAAGTTGTTGGA+GGG | - | chr6.4:26212345-26212364 | MS.gene09504:intron | 35.0% | |
| GTCAGTATTCAAGAAGTTGT+TGG | - | chr6.4:26212341-26212360 | MS.gene09504:intron | 35.0% | |
| GTTTGCTTATTATGTAGCAG+CGG | - | chr6.4:26213125-26213144 | MS.gene09504:intron | 35.0% | |
| TACATGGAATCAGAACTAGA+AGG | - | chr6.4:26213075-26213094 | MS.gene09504:intron | 35.0% | |
| TACTGCCTTTATTATCGGTA+AGG | + | chr6.4:26213800-26213819 | None:intergenic | 35.0% | |
| TAGAAAGTAAGGCAAAGCAT+TGG | + | chr6.4:26214172-26214191 | None:intergenic | 35.0% | |
| TATAAACGTCTCCTAAAGTC+CGG | - | chr6.4:26213419-26213438 | MS.gene09504:intron | 35.0% | |
| TCAAGAAGAGAAGATTCTTG+AGG | - | chr6.4:26212040-26212059 | MS.gene09504:intron | 35.0% | |
| TCTAGTGGAAATGGATATTG+GGG | + | chr6.4:26214021-26214040 | None:intergenic | 35.0% | |
| TGATGCATTCCAATATTAGG+TGG | - | chr6.4:26213052-26213071 | MS.gene09504:intron | 35.0% | |
| TGGATTCAAGCTACTAATCA+AGG | + | chr6.4:26214053-26214072 | None:intergenic | 35.0% | |
| TTCCAATATTAGGTGGTACA+TGG | - | chr6.4:26213059-26213078 | MS.gene09504:intron | 35.0% | |
| TTCCATGTACCACCTAATAT+TGG | + | chr6.4:26213064-26213083 | None:intergenic | 35.0% | |
| TTTCACCACCATAATGTTCA+AGG | + | chr6.4:26212671-26212690 | None:intergenic | 35.0% | |
| ! | AAAACGTCCCCTATTCTTTT+TGG | + | chr6.4:26213327-26213346 | None:intergenic | 35.0% |
| ! | AAGCGTTGCCAAAAAGAATA+GGG | - | chr6.4:26213316-26213335 | MS.gene09504:CDS | 35.0% |
| ! | ATGGTGGTGAAATTGATGTT+TGG | - | chr6.4:26212679-26212698 | MS.gene09504:CDS | 35.0% |
| ! | CAATGGGATTTAGAATCCTA+AGG | - | chr6.4:26211558-26211577 | MS.gene09504:intron | 35.0% |
| ! | GAAAAAGTTTTTCTCACGTC+TGG | - | chr6.4:26212258-26212277 | MS.gene09504:CDS | 35.0% |
| ! | TTCAAGCATTCTGAGAAAAG+TGG | - | chr6.4:26211936-26211955 | MS.gene09504:intron | 35.0% |
| ! | TTTAGAATCCTAAGGTTGCA+TGG | - | chr6.4:26211566-26211585 | MS.gene09504:intron | 35.0% |
| !! | AAAGCGTTGCCAAAAAGAAT+AGG | - | chr6.4:26213315-26213334 | MS.gene09504:CDS | 35.0% |
| !! | ACGCTTTTCTGGAGAAAAAT+AGG | - | chr6.4:26213451-26213470 | MS.gene09504:intron | 35.0% |
| !! | CAACGTTTTTCAATTGTTCC+AGG | + | chr6.4:26213283-26213302 | None:intergenic | 35.0% |
| !! | GTTGTTCATTTTCGAGAAGT+TGG | - | chr6.4:26211768-26211787 | MS.gene09504:intron | 35.0% |
| !! | TTTTTCAATTGTTCCAGGAG+AGG | + | chr6.4:26213278-26213297 | None:intergenic | 35.0% |
| !!! | CGACGATTTTTTTGCACTTT+TGG | - | chr6.4:26213386-26213405 | MS.gene09504:CDS | 35.0% |
| AAATCGTCGCCTTAGACTAT+AGG | + | chr6.4:26213375-26213394 | None:intergenic | 40.0% | |
| AAATGTCATCCAATCAGCCT+AGG | + | chr6.4:26213578-26213597 | None:intergenic | 40.0% | |
| AACAGCTTGATTTAGCTGTC+CGG | + | chr6.4:26211979-26211998 | None:intergenic | 40.0% | |
| AACCAAAGATTTATCTGGCG+AGG | - | chr6.4:26212136-26212155 | MS.gene09504:intron | 40.0% | |
| AGCGTTGCCAAAAAGAATAG+GGG | - | chr6.4:26213317-26213336 | MS.gene09504:CDS | 40.0% | |
| AGTCTGTGAATGATGTGTCA+AGG | - | chr6.4:26211226-26211245 | MS.gene09504:CDS | 40.0% | |
| ATAAACGTCTCCTAAAGTCC+GGG | - | chr6.4:26213420-26213439 | MS.gene09504:intron | 40.0% | |
| CAGCTAAATCAAGCTGTTAC+TGG | - | chr6.4:26211981-26212000 | MS.gene09504:intron | 40.0% | |
| GCACTTGAGAAGCTCTATAT+AGG | + | chr6.4:26212016-26212035 | None:intergenic | 40.0% | |
| GGTAAATTCTTCTGCTTTGC+CGG | - | chr6.4:26211957-26211976 | MS.gene09504:intron | 40.0% | |
| GGTGAAATCTTCGAACTTAC+CGG | + | chr6.4:26211606-26211625 | None:intergenic | 40.0% | |
| GTAACAAACTCTCTGTAGGT+GGG | - | chr6.4:26212581-26212600 | MS.gene09504:intron | 40.0% | |
| TGTAACAAACTCTCTGTAGG+TGG | - | chr6.4:26212580-26212599 | MS.gene09504:intron | 40.0% | |
| TTGTTCCAGGAGAGGATAAA+TGG | + | chr6.4:26213270-26213289 | None:intergenic | 40.0% | |
| ! | AAGAATAGGGGACGTTTTTC+AGG | - | chr6.4:26213329-26213348 | MS.gene09504:CDS | 40.0% |
| ! | AGAATAGGGGACGTTTTTCA+GGG | - | chr6.4:26213330-26213349 | MS.gene09504:CDS | 40.0% |
| ! | ATCGGAAGTACACATTCGAA+CGG | - | chr6.4:26212235-26212254 | MS.gene09504:CDS | 40.0% |
| ! | ATGTGTACTTCCGATGGATT+TGG | + | chr6.4:26212230-26212249 | None:intergenic | 40.0% |
| ! | GGATTGGTAAGACCCTTTAT+AGG | - | chr6.4:26212700-26212719 | MS.gene09504:CDS | 40.0% |
| ! | TGGTCACTTTCTAGTGGAAA+TGG | + | chr6.4:26214030-26214049 | None:intergenic | 40.0% |
| !! | GACTCAGAAAGGTATTTGCT+GGG | - | chr6.4:26211499-26211518 | MS.gene09504:intron | 40.0% |
| AAAGGTAAGGGCAGTAACCA+CGG | - | chr6.4:26212983-26213002 | MS.gene09504:intron | 45.0% | |
| ACAGCATATTTGAGCCTGAG+AGG | - | chr6.4:26213148-26213167 | MS.gene09504:intron | 45.0% | |
| ACTAAAAGTTGACCCCACCT+TGG | + | chr6.4:26214108-26214127 | None:intergenic | 45.0% | |
| CACCTCGCCAGATAAATCTT+TGG | + | chr6.4:26212141-26212160 | None:intergenic | 45.0% | |
| CATGGCTACCAAGTTTCATC+CGG | - | chr6.4:26211584-26211603 | MS.gene09504:intron | 45.0% | |
| CGAACTTACCGGATGAAACT+TGG | + | chr6.4:26211595-26211614 | None:intergenic | 45.0% | |
| CTACACCATTTATCCTCTCC+TGG | - | chr6.4:26213262-26213281 | MS.gene09504:CDS | 45.0% | |
| GTTCGAATGTGTACTTCCGA+TGG | + | chr6.4:26212236-26212255 | None:intergenic | 45.0% | |
| GTTGTTGCACGTGTCTATGA+AGG | - | chr6.4:26214126-26214145 | MS.gene09504:CDS | 45.0% | |
| TCTCCTAAAGTCCGGGAATA+GGG | - | chr6.4:26213427-26213446 | MS.gene09504:intron | 45.0% | |
| TTGCTGGGCAAGAAATTCAG+AGG | - | chr6.4:26211514-26211533 | MS.gene09504:intron | 45.0% | |
| ! | CTACTTCAGTTTTGCCTTCG+AGG | - | chr6.4:26213982-26214001 | MS.gene09504:intron | 45.0% |
| ! | CTCTAGAGAGAGACTTGCAT+GGG | - | chr6.4:26213172-26213191 | MS.gene09504:intron | 45.0% |
| ! | GTATGCTAGCTTACCCAGAT+TGG | - | chr6.4:26212632-26212651 | MS.gene09504:intron | 45.0% |
| ! | TCAAGGTGGTCACTTTCTAG+TGG | + | chr6.4:26214036-26214055 | None:intergenic | 45.0% |
| ! | TCGGAAGTACACATTCGAAC+GGG | - | chr6.4:26212236-26212255 | MS.gene09504:CDS | 45.0% |
| ! | TCTCTAGAGAGAGACTTGCA+TGG | - | chr6.4:26213171-26213190 | MS.gene09504:intron | 45.0% |
| !! | GAATAGGGGACGTTTTTCAG+GGG | - | chr6.4:26213331-26213350 | MS.gene09504:CDS | 45.0% |
| !! | GGACTCAGAAAGGTATTTGC+TGG | - | chr6.4:26211498-26211517 | MS.gene09504:intron | 45.0% |
| !!! | TAATTTAAAATTTTAGATAT+TGG | - | chr6.4:26211442-26211461 | MS.gene09504:intron | 5.0% |
| AAGGGCAAGTGCTTCATCCA+AGG | - | chr6.4:26214088-26214107 | MS.gene09504:intron | 50.0% | |
| CAAGTGCTTCATCCAAGGTG+GGG | - | chr6.4:26214093-26214112 | MS.gene09504:intron | 50.0% | |
| CCAGTTCAGACACCAACGAA+GGG | - | chr6.4:26214070-26214089 | MS.gene09504:intron | 50.0% | |
| CTCCTAAAGTCCGGGAATAG+GGG | - | chr6.4:26213428-26213447 | MS.gene09504:intron | 50.0% | |
| CTGGGTAAGCTAGCATACCA+TGG | + | chr6.4:26212630-26212649 | None:intergenic | 50.0% | |
| GCAAGTGCTTCATCCAAGGT+GGG | - | chr6.4:26214092-26214111 | MS.gene09504:intron | 50.0% | |
| GTCTCCTAAAGTCCGGGAAT+AGG | - | chr6.4:26213426-26213445 | MS.gene09504:intron | 50.0% | |
| GTCTGTGTCAAATGCCTCGA+AGG | + | chr6.4:26213999-26214018 | None:intergenic | 50.0% | |
| GTGGTTACTGCCCTTACCTT+TGG | + | chr6.4:26212984-26213003 | None:intergenic | 50.0% | |
| TCCAGTTCAGACACCAACGA+AGG | - | chr6.4:26214069-26214088 | MS.gene09504:intron | 50.0% | |
| ! | ATGAAGCACTTGCCCTTCGT+TGG | + | chr6.4:26214085-26214104 | None:intergenic | 50.0% |
| ! | CTTGGTAGCCATGCAACCTT+AGG | + | chr6.4:26211577-26211596 | None:intergenic | 50.0% |
| ! | GGCAACGCTTTTAGCAGTTC+TGG | + | chr6.4:26213306-26213325 | None:intergenic | 50.0% |
| ! | TCTCTCTCTAGAGACCTCTC+AGG | + | chr6.4:26213165-26213184 | None:intergenic | 50.0% |
| !! | AGAAAAGCGTCCCCTATTCC+CGG | + | chr6.4:26213441-26213460 | None:intergenic | 50.0% |
| !! | GCATGTTAGAGAGTGTTCCG+TGG | + | chr6.4:26213003-26213022 | None:intergenic | 50.0% |
| !! | GGCAAAGCATTGGAGCATGA+TGG | + | chr6.4:26214162-26214181 | None:intergenic | 50.0% |
| !! | TCTGTAGGTGGGTTATGCTC+TGG | - | chr6.4:26212592-26212611 | MS.gene09504:intron | 50.0% |
| ACTATAGGCGACGCTCGCAT+AGG | + | chr6.4:26213360-26213379 | None:intergenic | 55.0% | |
| GCATACCATGGCACATCCAG+AGG | + | chr6.4:26212618-26212637 | None:intergenic | 55.0% | |
| GGCAAGTGCTTCATCCAAGG+TGG | - | chr6.4:26214091-26214110 | MS.gene09504:intron | 55.0% | |
| GTCCCCTATTCCCGGACTTT+AGG | + | chr6.4:26213433-26213452 | None:intergenic | 55.0% | |
| ! | CCCTTCGTTGGTGTCTGAAC+TGG | + | chr6.4:26214073-26214092 | None:intergenic | 55.0% |
| ! | CGAGCGTCGCCTATAGTCTA+AGG | - | chr6.4:26213363-26213382 | MS.gene09504:CDS | 55.0% |
| ! | GGGAATAGGGGACGCTTTTC+TGG | - | chr6.4:26213440-26213459 | MS.gene09504:intron | 55.0% |
| TCTGGCCTCTGGATGTGCCA+TGG | - | chr6.4:26212610-26212629 | MS.gene09504:intron | 60.0% | |
| ! | GTGGGTTATGCTCTGGCCTC+TGG | - | chr6.4:26212599-26212618 | MS.gene09504:intron | 60.0% |
| !! | GTGGATTGGCTAGAGCGCCT+TGG | - | chr6.4:26211171-26211190 | MS.gene09504:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.4 | gene | 26211162 | 26214194 | 26211162 | ID=MS.gene09504 |
| chr6.4 | mRNA | 26211162 | 26214194 | 26211162 | ID=MS.gene09504.t1;Parent=MS.gene09504 |
| chr6.4 | exon | 26214109 | 26214194 | 26214109 | ID=MS.gene09504.t1.exon1;Parent=MS.gene09504.t1 |
| chr6.4 | CDS | 26214109 | 26214194 | 26214109 | ID=cds.MS.gene09504.t1;Parent=MS.gene09504.t1 |
| chr6.4 | exon | 26213751 | 26213863 | 26213751 | ID=MS.gene09504.t1.exon2;Parent=MS.gene09504.t1 |
| chr6.4 | CDS | 26213751 | 26213863 | 26213751 | ID=cds.MS.gene09504.t1;Parent=MS.gene09504.t1 |
| chr6.4 | exon | 26213199 | 26213425 | 26213199 | ID=MS.gene09504.t1.exon3;Parent=MS.gene09504.t1 |
| chr6.4 | CDS | 26213199 | 26213425 | 26213199 | ID=cds.MS.gene09504.t1;Parent=MS.gene09504.t1 |
| chr6.4 | exon | 26212990 | 26213015 | 26212990 | ID=MS.gene09504.t1.exon4;Parent=MS.gene09504.t1 |
| chr6.4 | CDS | 26212990 | 26213015 | 26212990 | ID=cds.MS.gene09504.t1;Parent=MS.gene09504.t1 |
| chr6.4 | exon | 26212635 | 26212757 | 26212635 | ID=MS.gene09504.t1.exon5;Parent=MS.gene09504.t1 |
| chr6.4 | CDS | 26212635 | 26212757 | 26212635 | ID=cds.MS.gene09504.t1;Parent=MS.gene09504.t1 |
| chr6.4 | exon | 26212370 | 26212429 | 26212370 | ID=MS.gene09504.t1.exon6;Parent=MS.gene09504.t1 |
| chr6.4 | CDS | 26212370 | 26212429 | 26212370 | ID=cds.MS.gene09504.t1;Parent=MS.gene09504.t1 |
| chr6.4 | exon | 26212187 | 26212285 | 26212187 | ID=MS.gene09504.t1.exon7;Parent=MS.gene09504.t1 |
| chr6.4 | CDS | 26212187 | 26212285 | 26212187 | ID=cds.MS.gene09504.t1;Parent=MS.gene09504.t1 |
| chr6.4 | exon | 26211162 | 26211282 | 26211162 | ID=MS.gene09504.t1.exon8;Parent=MS.gene09504.t1 |
| chr6.4 | CDS | 26211162 | 26211282 | 26211162 | ID=cds.MS.gene09504.t1;Parent=MS.gene09504.t1 |
| Gene Sequence |
| Protein sequence |
