Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42887.t1 | PNY07678.1 | 51.4 | 350 | 93 | 3 | 35 | 307 | 2 | 351 | 1.30E-84 | 323.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42887.t1 | A0A2K3NXB6 | 51.4 | 350 | 93 | 3 | 35 | 307 | 2 | 351 | 9.6e-85 | 323.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene42887 | 0.818255 | 2.16E-52 | -1.69E-46 |
| MS.gene049587 | MS.gene42887 | 0.800095 | 1.69E-48 | -1.69E-46 |
| MS.gene049853 | MS.gene42887 | 0.893419 | 6.40E-75 | -1.69E-46 |
| MS.gene052447 | MS.gene42887 | 0.841755 | 3.92E-58 | -1.69E-46 |
| MS.gene05329 | MS.gene42887 | 0.820874 | 5.45E-53 | -1.69E-46 |
| MS.gene05404 | MS.gene42887 | 0.811813 | 5.80E-51 | -1.69E-46 |
| MS.gene054174 | MS.gene42887 | 0.864543 | 1.13E-64 | -1.69E-46 |
| MS.gene054175 | MS.gene42887 | 0.870013 | 2.01E-66 | -1.69E-46 |
| MS.gene054484 | MS.gene42887 | 0.842255 | 2.89E-58 | -1.69E-46 |
| MS.gene055017 | MS.gene42887 | 0.823937 | 1.06E-53 | -1.69E-46 |
| MS.gene055056 | MS.gene42887 | 0.807579 | 4.72E-50 | -1.69E-46 |
| MS.gene055058 | MS.gene42887 | 0.817002 | 4.13E-52 | -1.69E-46 |
| MS.gene055952 | MS.gene42887 | 0.839449 | 1.57E-57 | -1.69E-46 |
| MS.gene058515 | MS.gene42887 | 0.814879 | 1.23E-51 | -1.69E-46 |
| MS.gene058580 | MS.gene42887 | 0.821169 | 4.66E-53 | -1.69E-46 |
| MS.gene059276 | MS.gene42887 | 0.839495 | 1.53E-57 | -1.69E-46 |
| MS.gene059458 | MS.gene42887 | 0.824635 | 7.26E-54 | -1.69E-46 |
| MS.gene059460 | MS.gene42887 | 0.803179 | 3.94E-49 | -1.69E-46 |
| MS.gene060610 | MS.gene42887 | 0.809499 | 1.84E-50 | -1.69E-46 |
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42887.t1 | MTR_7g070100 | 46.064 | 343 | 107 | 4 | 42 | 307 | 9 | 350 | 4.30e-86 | 262 |
| MS.gene42887.t1 | MTR_3g006100 | 41.834 | 349 | 123 | 6 | 36 | 305 | 3 | 350 | 4.21e-80 | 247 |
| MS.gene42887.t1 | MTR_3g006010 | 42.179 | 358 | 127 | 6 | 26 | 304 | 110 | 466 | 3.49e-79 | 248 |
| MS.gene42887.t1 | MTR_4g133490 | 42.609 | 345 | 112 | 8 | 42 | 305 | 7 | 346 | 1.26e-78 | 243 |
| MS.gene42887.t1 | MTR_3g006120 | 41.954 | 348 | 122 | 6 | 36 | 304 | 3 | 349 | 7.43e-78 | 241 |
| MS.gene42887.t1 | MTR_3g006140 | 39.888 | 356 | 134 | 6 | 30 | 306 | 19 | 373 | 2.02e-75 | 236 |
| MS.gene42887.t1 | MTR_3g006180 | 42.478 | 339 | 115 | 6 | 47 | 306 | 1 | 338 | 5.73e-75 | 233 |
| MS.gene42887.t1 | MTR_4g133320 | 45.196 | 281 | 103 | 7 | 71 | 305 | 31 | 306 | 5.11e-70 | 219 |
| MS.gene42887.t1 | MTR_1g100280 | 42.012 | 338 | 126 | 10 | 32 | 307 | 8 | 337 | 7.35e-69 | 218 |
| MS.gene42887.t1 | MTR_1g109340 | 43.919 | 296 | 144 | 6 | 29 | 306 | 63 | 354 | 2.93e-67 | 214 |
| MS.gene42887.t1 | MTR_3g045700 | 39.888 | 356 | 124 | 8 | 35 | 307 | 2 | 350 | 6.00e-67 | 213 |
| MS.gene42887.t1 | MTR_7g083950 | 38.587 | 368 | 135 | 10 | 23 | 307 | 73 | 432 | 4.30e-64 | 208 |
| MS.gene42887.t1 | MTR_6g091830 | 36.712 | 365 | 142 | 7 | 29 | 307 | 94 | 455 | 2.01e-58 | 194 |
| MS.gene42887.t1 | MTR_3g068220 | 37.255 | 357 | 135 | 8 | 35 | 305 | 2 | 355 | 4.57e-58 | 191 |
| MS.gene42887.t1 | MTR_6g092140 | 36.438 | 365 | 143 | 7 | 29 | 307 | 94 | 455 | 2.10e-57 | 191 |
| MS.gene42887.t1 | MTR_6g011110 | 45.045 | 222 | 103 | 7 | 99 | 307 | 62 | 277 | 2.35e-48 | 163 |
| MS.gene42887.t1 | MTR_6g088340 | 37.931 | 290 | 125 | 6 | 70 | 307 | 147 | 433 | 4.80e-48 | 166 |
| MS.gene42887.t1 | MTR_3g086480 | 44.608 | 204 | 103 | 6 | 99 | 298 | 55 | 252 | 1.64e-43 | 149 |
| MS.gene42887.t1 | MTR_1g109520 | 46.835 | 158 | 79 | 3 | 154 | 306 | 19 | 176 | 8.67e-36 | 127 |
| MS.gene42887.t1 | MTR_1g089620 | 50.360 | 139 | 56 | 3 | 135 | 272 | 34 | 160 | 6.05e-35 | 128 |
| MS.gene42887.t1 | MTR_3g085910 | 34.962 | 266 | 120 | 8 | 51 | 269 | 16 | 275 | 1.79e-33 | 124 |
| MS.gene42887.t1 | MTR_6g023220 | 32.105 | 190 | 120 | 4 | 118 | 303 | 170 | 354 | 1.07e-21 | 94.4 |
| MS.gene42887.t1 | MTR_1g093300 | 48.387 | 93 | 47 | 1 | 137 | 228 | 6 | 98 | 1.39e-19 | 83.6 |
| MS.gene42887.t1 | MTR_6g091850 | 41.584 | 101 | 53 | 2 | 213 | 307 | 1 | 101 | 4.50e-17 | 75.5 |
| MS.gene42887.t1 | MTR_1g012330 | 60.000 | 60 | 24 | 0 | 99 | 158 | 62 | 121 | 2.16e-14 | 72.0 |
| MS.gene42887.t1 | MTR_0128s0040 | 43.750 | 96 | 14 | 1 | 69 | 124 | 41 | 136 | 1.44e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGAACAAAATAAATTAT+TGG | 0.204220 | 7.2:+33218736 | MS.gene42887:CDS |
| CCAGAATGTGAAGTGTATTC+AGG | 0.267618 | 7.2:+33218917 | MS.gene42887:CDS |
| CGATGAAGTTGATTATTCTA+TGG | 0.280856 | 7.2:+33219042 | MS.gene42887:CDS |
| CGGAAATCCATGGACTGTTT+TGG | 0.288615 | 7.2:+33218544 | MS.gene42887:CDS |
| AGTAAGTAACTTTGGCAAAA+AGG | 0.295703 | 7.2:-33218687 | None:intergenic |
| CCTGAATACACTTCACATTC+TGG | 0.296027 | 7.2:-33218917 | None:intergenic |
| ATTGCTCAGCGCATGGCATT+TGG | 0.329174 | 7.2:-33218840 | None:intergenic |
| CTTTCATATCCCCACTTTCC+CGG | 0.335775 | 7.2:-33218863 | None:intergenic |
| ATCAGTCTCGATATTCTAGA+TGG | 0.345680 | 7.2:+33218504 | MS.gene42887:CDS |
| AGTCCATGGATTTCCGTGTT+TGG | 0.349831 | 7.2:-33218537 | None:intergenic |
| AAAATCCAGCTTTCGAGATA+TGG | 0.371968 | 7.2:-33218072 | None:intergenic |
| TGTTGACTTCAGCGAACTTT+CGG | 0.382328 | 7.2:+33218034 | MS.gene42887:CDS |
| TACACCTATCTCAGCCTTAT+CGG | 0.384690 | 7.2:-33218603 | None:intergenic |
| ATAAATTATTGGACGTCTAC+AGG | 0.413663 | 7.2:+33218747 | MS.gene42887:CDS |
| TTGCTCAGCGCATGGCATTT+GGG | 0.414008 | 7.2:-33218839 | None:intergenic |
| CCAAAGTTACTTACTTGTGA+TGG | 0.415525 | 7.2:+33218695 | MS.gene42887:CDS |
| AGCCAATACAGTTGTGATCT+AGG | 0.419217 | 7.2:-33218995 | None:intergenic |
| TTATGTCAAGCTAGAAACTT+TGG | 0.427927 | 7.2:+33218790 | MS.gene42887:CDS |
| TGCCATGCGCTGAGCAATCC+GGG | 0.435971 | 7.2:+33218845 | MS.gene42887:CDS |
| ATGCCATGCGCTGAGCAATC+CGG | 0.444798 | 7.2:+33218844 | MS.gene42887:CDS |
| CCATCACAAGTAAGTAACTT+TGG | 0.447007 | 7.2:-33218695 | None:intergenic |
| TATTTATGTTCTCACCGATA+AGG | 0.448466 | 7.2:+33218589 | MS.gene42887:CDS |
| CTCCTAGATCACAACTGTAT+TGG | 0.458229 | 7.2:+33218993 | MS.gene42887:CDS |
| CGCTGAGCAATCCGGGAAAG+TGG | 0.475761 | 7.2:+33218852 | MS.gene42887:CDS |
| TATGTCAAGCTAGAAACTTT+GGG | 0.484550 | 7.2:+33218791 | MS.gene42887:CDS |
| CAGAATGTGAAGTGTATTCA+GGG | 0.493079 | 7.2:+33218918 | MS.gene42887:CDS |
| CACAACTGTATTGGCTGGAT+TGG | 0.493429 | 7.2:+33219002 | MS.gene42887:CDS |
| CTCACCGATAAGGCTGAGAT+AGG | 0.500858 | 7.2:+33218599 | MS.gene42887:CDS |
| ACCTATCTGTGTTCGTCTAG+TGG | 0.505239 | 7.2:+33218287 | MS.gene42887:CDS |
| TAGATCACAACTGTATTGGC+TGG | 0.505287 | 7.2:+33218997 | MS.gene42887:CDS |
| TGATACCATATCTCGAAAGC+TGG | 0.511555 | 7.2:+33218067 | MS.gene42887:CDS |
| TTCCCGGATTGCTCAGCGCA+TGG | 0.514964 | 7.2:-33218847 | None:intergenic |
| CAAAGTTACTTACTTGTGAT+GGG | 0.516336 | 7.2:+33218696 | MS.gene42887:CDS |
| ACAAAGTCCAAAACAGTCCA+TGG | 0.533812 | 7.2:-33218551 | None:intergenic |
| GGAAGTCGATGACCATCAGC+TGG | 0.536242 | 7.2:-33218971 | None:intergenic |
| TCCACTAGACGAACACAGAT+AGG | 0.539372 | 7.2:-33218288 | None:intergenic |
| AATTCAGAGCAAGGGAGTGA+CGG | 0.544318 | 7.2:+33215910 | MS.gene42887:CDS |
| TTGTGATGGGAAGCTTCTTG+TGG | 0.555728 | 7.2:+33218709 | MS.gene42887:CDS |
| AAATGCATTGTTCCAGCTGA+TGG | 0.564449 | 7.2:+33218959 | MS.gene42887:CDS |
| TCAGTCTCGATATTCTAGAT+GGG | 0.573197 | 7.2:+33218505 | MS.gene42887:CDS |
| GCTGAGCAATCCGGGAAAGT+GGG | 0.577558 | 7.2:+33218853 | MS.gene42887:CDS |
| GTGACGGAGATGATTCTAAG+AGG | 0.579615 | 7.2:+33215926 | MS.gene42887:CDS |
| ATTCCAAACACGGAAATCCA+TGG | 0.590954 | 7.2:+33218534 | MS.gene42887:CDS |
| AGTGGATATCTCATCATGAA+AGG | 0.600961 | 7.2:+33218305 | MS.gene42887:CDS |
| CTCACAAAGAATTCAGAGCA+AGG | 0.609873 | 7.2:+33215901 | MS.gene42887:CDS |
| CTGAGCAATCCGGGAAAGTG+GGG | 0.636096 | 7.2:+33218854 | MS.gene42887:CDS |
| TCACAAAGAATTCAGAGCAA+GGG | 0.646539 | 7.2:+33215902 | MS.gene42887:CDS |
| TTCGAATGAATATGTCGTAG+TGG | 0.650403 | 7.2:+33218448 | MS.gene42887:CDS |
| TGGGTTACTTATTCCAAACA+CGG | 0.657134 | 7.2:+33218524 | MS.gene42887:CDS |
| CAATACAGTTGTGATCTAGG+AGG | 0.698754 | 7.2:-33218992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATAGAATTAGAAATTA+TGG | - | chr7.2:33216705-33216724 | None:intergenic | 10.0% |
| !!! | TGAAATATTACATATTTTTA+GGG | + | chr7.2:33216734-33216753 | MS.gene42887:intron | 10.0% |
| !! | ATTCATTAATTGTAGTTTAT+TGG | - | chr7.2:33218333-33218352 | None:intergenic | 15.0% |
| !! | CTTTGAACAAAATAAATTAT+TGG | + | chr7.2:33218736-33218755 | MS.gene42887:CDS | 15.0% |
| !! | GAAAAAACTAAAAAACTAAA+TGG | + | chr7.2:33216824-33216843 | MS.gene42887:intron | 15.0% |
| !!! | AGTTTATTCTTTTTTCTTTT+CGG | + | chr7.2:33216777-33216796 | MS.gene42887:intron | 15.0% |
| !!! | ATATATAAAAGCAATTTTAG+TGG | - | chr7.2:33217068-33217087 | None:intergenic | 15.0% |
| !!! | ATCATTTGTTTTCTTATAAA+TGG | - | chr7.2:33218356-33218375 | None:intergenic | 15.0% |
| !!! | GTGAAATATTACATATTTTT+AGG | + | chr7.2:33216733-33216752 | MS.gene42887:intron | 15.0% |
| !!! | TAGTTTTTTAGTTTTTTCTT+TGG | - | chr7.2:33216822-33216841 | None:intergenic | 15.0% |
| !!! | TATATAAAAGCAATTTTAGT+GGG | - | chr7.2:33217067-33217086 | None:intergenic | 15.0% |
| !! | AAGAAAAAAGAATAAACTGA+AGG | - | chr7.2:33216775-33216794 | None:intergenic | 20.0% |
| !! | AATATAAAGAAGCCAAAAAT+AGG | + | chr7.2:33216937-33216956 | MS.gene42887:intron | 20.0% |
| !! | ATAGATGATTAAATTGATGT+TGG | - | chr7.2:33217492-33217511 | None:intergenic | 20.0% |
| !!! | ATATAAAAGCAATTTTAGTG+GGG | - | chr7.2:33217066-33217085 | None:intergenic | 20.0% |
| !!! | ATTACATGATTGTTTTAGAT+TGG | + | chr7.2:33216261-33216280 | MS.gene42887:intron | 20.0% |
| !!! | GCACTTTTATTATTAACATT+GGG | + | chr7.2:33217956-33217975 | MS.gene42887:intron | 20.0% |
| !!! | GTCTTTCAATTAAATTTTCT+GGG | + | chr7.2:33216351-33216370 | MS.gene42887:intron | 20.0% |
| !!! | TCTTTCAATTAAATTTTCTG+GGG | + | chr7.2:33216352-33216371 | MS.gene42887:intron | 20.0% |
| !!! | TGCACTTTTATTATTAACAT+TGG | + | chr7.2:33217955-33217974 | MS.gene42887:intron | 20.0% |
| !!! | TTACATGATTGTTTTAGATT+GGG | + | chr7.2:33216262-33216281 | MS.gene42887:intron | 20.0% |
| !!! | TTAGTTTTGTCATAATATGA+GGG | - | chr7.2:33216988-33217007 | None:intergenic | 20.0% |
| !!! | TTTAGTTTTGTCATAATATG+AGG | - | chr7.2:33216989-33217008 | None:intergenic | 20.0% |
| !!! | TTTTTCCAATATCATATAGA+TGG | + | chr7.2:33217756-33217775 | MS.gene42887:intron | 20.0% |
| ! | AAAACTAAATGGACATTCTT+AGG | + | chr7.2:33216835-33216854 | MS.gene42887:intron | 25.0% |
| ! | AAAGTAATGCTTATAAGTAG+TGG | + | chr7.2:33216636-33216655 | MS.gene42887:intron | 25.0% |
| ! | AAGAAATATGATACTTGCAA+GGG | - | chr7.2:33217283-33217302 | None:intergenic | 25.0% |
| ! | AAGTAATGCTTATAAGTAGT+GGG | + | chr7.2:33216637-33216656 | MS.gene42887:intron | 25.0% |
| ! | AATTTATTGGAGAAGTTTCA+TGG | + | chr7.2:33218148-33218167 | MS.gene42887:intron | 25.0% |
| ! | ACAATCTCATGAAACAATAT+AGG | - | chr7.2:33216101-33216120 | None:intergenic | 25.0% |
| ! | ACTACTTATAAGCATTACTT+TGG | - | chr7.2:33216637-33216656 | None:intergenic | 25.0% |
| ! | ATCAACCATCTATATGATAT+TGG | - | chr7.2:33217764-33217783 | None:intergenic | 25.0% |
| ! | GAAATGAGAAAAATAATGCA+AGG | - | chr7.2:33218820-33218839 | None:intergenic | 25.0% |
| ! | GGAGAGTTCAAAAAATTTAT+TGG | + | chr7.2:33218135-33218154 | MS.gene42887:intron | 25.0% |
| ! | GTATAATAGAATAAACCCAT+GGG | - | chr7.2:33217354-33217373 | None:intergenic | 25.0% |
| ! | TAAGAAATATGATACTTGCA+AGG | - | chr7.2:33217284-33217303 | None:intergenic | 25.0% |
| ! | TAATATCATAGAAAATCGTG+AGG | - | chr7.2:33217911-33217930 | None:intergenic | 25.0% |
| ! | TATAATAGAATAAACCCATG+GGG | - | chr7.2:33217353-33217372 | None:intergenic | 25.0% |
| ! | TATTGTTGGAAATCAAAGTA+GGG | - | chr7.2:33217434-33217453 | None:intergenic | 25.0% |
| ! | TGTATAATAGAATAAACCCA+TGG | - | chr7.2:33217355-33217374 | None:intergenic | 25.0% |
| !! | CGTCTTTCAATTAAATTTTC+TGG | + | chr7.2:33216350-33216369 | MS.gene42887:intron | 25.0% |
| !! | TCAAAGATTTATGGGTTTTA+TGG | + | chr7.2:33217716-33217735 | MS.gene42887:intron | 25.0% |
| !! | TTGAGCCAATATTTTCAAAT+TGG | + | chr7.2:33217785-33217804 | MS.gene42887:intron | 25.0% |
| !!! | ATTACTTTGGCTTTATTTCT+AGG | - | chr7.2:33216624-33216643 | None:intergenic | 25.0% |
| !!! | CTCTAAAATTCACTTATACA+TGG | - | chr7.2:33217093-33217112 | None:intergenic | 25.0% |
| !!! | GAAGATTATTTTTGTCGTTA+CGG | + | chr7.2:33218395-33218414 | MS.gene42887:intron | 25.0% |
| !!! | GCTTGTTTTAAATTTCTGAA+GGG | - | chr7.2:33217234-33217253 | None:intergenic | 25.0% |
| !!! | GTATTACTTACTTTTGTCAA+AGG | + | chr7.2:33218425-33218444 | MS.gene42887:intron | 25.0% |
| !!! | TAATTTTAACCTATCAGTCA+TGG | - | chr7.2:33216189-33216208 | None:intergenic | 25.0% |
| !!! | TATACAATTAAAGTGTCGTT+TGG | + | chr7.2:33217515-33217534 | MS.gene42887:intron | 25.0% |
| !!! | TATGGGTTTTATGGATTTAT+GGG | + | chr7.2:33217725-33217744 | MS.gene42887:intron | 25.0% |
| !!! | TTATGGGTTTTATGGATTTA+TGG | + | chr7.2:33217724-33217743 | MS.gene42887:intron | 25.0% |
| !!! | TTGATGTTGGAATTATTTTG+AGG | - | chr7.2:33217479-33217498 | None:intergenic | 25.0% |
| AAAAATAACTCATCTTAGCG+CGG | - | chr7.2:33218259-33218278 | None:intergenic | 30.0% | |
| AATGATGACACTTGTATTGT+TGG | - | chr7.2:33217448-33217467 | None:intergenic | 30.0% | |
| ACAAAAGTAAGTAATACACG+AGG | - | chr7.2:33218422-33218441 | None:intergenic | 30.0% | |
| AGCAGAACTTCAAAGATTTA+TGG | + | chr7.2:33217707-33217726 | MS.gene42887:intron | 30.0% | |
| AGTAAGTAACTTTGGCAAAA+AGG | - | chr7.2:33218690-33218709 | None:intergenic | 30.0% | |
| AGTTTCGATTATAGTGACTA+GGG | - | chr7.2:33216524-33216543 | None:intergenic | 30.0% | |
| ATAAATTATTGGACGTCTAC+AGG | + | chr7.2:33218747-33218766 | MS.gene42887:CDS | 30.0% | |
| ATTACTTAGGCTATGTCTTT+AGG | - | chr7.2:33216316-33216335 | None:intergenic | 30.0% | |
| ATTGTTGGAAATCAAAGTAG+GGG | - | chr7.2:33217433-33217452 | None:intergenic | 30.0% | |
| CAAAGTTACTTACTTGTGAT+GGG | + | chr7.2:33218696-33218715 | MS.gene42887:CDS | 30.0% | |
| CACCACCAATTTGAAAATAT+TGG | - | chr7.2:33217793-33217812 | None:intergenic | 30.0% | |
| CTCAACATTAGTACAACTAA+AGG | + | chr7.2:33216914-33216933 | MS.gene42887:intron | 30.0% | |
| CTTTAGTTGTACTAATGTTG+AGG | - | chr7.2:33216916-33216935 | None:intergenic | 30.0% | |
| GCAGAACTTCAAAGATTTAT+GGG | + | chr7.2:33217708-33217727 | MS.gene42887:intron | 30.0% | |
| GTATTGTTGGAAATCAAAGT+AGG | - | chr7.2:33217435-33217454 | None:intergenic | 30.0% | |
| TAGTTTCGATTATAGTGACT+AGG | - | chr7.2:33216525-33216544 | None:intergenic | 30.0% | |
| TATGTCAAGCTAGAAACTTT+GGG | + | chr7.2:33218791-33218810 | MS.gene42887:CDS | 30.0% | |
| TATTTATGTTCTCACCGATA+AGG | + | chr7.2:33218589-33218608 | MS.gene42887:CDS | 30.0% | |
| TATTTCAAGCATCAACTAGA+TGG | + | chr7.2:33217674-33217693 | MS.gene42887:intron | 30.0% | |
| TCACTATAATCGAAACTACT+TGG | + | chr7.2:33216527-33216546 | MS.gene42887:intron | 30.0% | |
| TTATGTCAAGCTAGAAACTT+TGG | + | chr7.2:33218790-33218809 | MS.gene42887:CDS | 30.0% | |
| ! | AGCCAATATTTTCAAATTGG+TGG | + | chr7.2:33217788-33217807 | MS.gene42887:intron | 30.0% |
| ! | CAATTCTGGTTATTCATCTA+TGG | - | chr7.2:33217820-33217839 | None:intergenic | 30.0% |
| ! | CGATGAAGTTGATTATTCTA+TGG | + | chr7.2:33219042-33219061 | MS.gene42887:CDS | 30.0% |
| ! | GACGATCTATTTCAATTTTC+TGG | + | chr7.2:33218095-33218114 | MS.gene42887:CDS | 30.0% |
| ! | TATGAAGTTTTGCACTATTG+AGG | + | chr7.2:33217631-33217650 | MS.gene42887:intron | 30.0% |
| ! | TTCTTTTTACGATATGTCCA+GGG | - | chr7.2:33216869-33216888 | None:intergenic | 30.0% |
| ! | TTTAAATTTCTGAAGGGAGA+TGG | - | chr7.2:33217228-33217247 | None:intergenic | 30.0% |
| ! | TTTCTTTTCGGTACAAAAGA+GGG | + | chr7.2:33216789-33216808 | MS.gene42887:intron | 30.0% |
| ! | TTTTCTTTTCGGTACAAAAG+AGG | + | chr7.2:33216788-33216807 | MS.gene42887:intron | 30.0% |
| !!! | CGCTAAGATGAGTTATTTTT+GGG | + | chr7.2:33218259-33218278 | MS.gene42887:CDS | 30.0% |
| !!! | GCTAAGATGAGTTATTTTTG+GGG | + | chr7.2:33218260-33218279 | MS.gene42887:CDS | 30.0% |
| !!! | GGCTTGTTTTAAATTTCTGA+AGG | - | chr7.2:33217235-33217254 | None:intergenic | 30.0% |
| AAAATAATCTTCAACAGCCG+AGG | - | chr7.2:33218387-33218406 | None:intergenic | 35.0% | |
| AAAATCCAGCTTTCGAGATA+TGG | - | chr7.2:33218075-33218094 | None:intergenic | 35.0% | |
| AAATATGATACTTGCAAGGG+AGG | - | chr7.2:33217280-33217299 | None:intergenic | 35.0% | |
| AAGCCAAATGAGCATTACTT+AGG | - | chr7.2:33216329-33216348 | None:intergenic | 35.0% | |
| ACAAATGATCATTGACACCT+CGG | + | chr7.2:33218367-33218386 | MS.gene42887:intron | 35.0% | |
| ACCACAATGAAAAGCAATTC+TGG | - | chr7.2:33217834-33217853 | None:intergenic | 35.0% | |
| ACCTACATCTTGTAATGTGT+GGG | - | chr7.2:33216446-33216465 | None:intergenic | 35.0% | |
| AGTAACTTTGGCAAAAAGGA+TGG | - | chr7.2:33218686-33218705 | None:intergenic | 35.0% | |
| AGTGGATATCTCATCATGAA+AGG | + | chr7.2:33218305-33218324 | MS.gene42887:CDS | 35.0% | |
| ATCAGTCTCGATATTCTAGA+TGG | + | chr7.2:33218504-33218523 | MS.gene42887:CDS | 35.0% | |
| ATGACAACAATGACAATGCT+AGG | - | chr7.2:33217987-33218006 | None:intergenic | 35.0% | |
| CAGAATGTGAAGTGTATTCA+GGG | + | chr7.2:33218918-33218937 | MS.gene42887:CDS | 35.0% | |
| CCAAAGTTACTTACTTGTGA+TGG | + | chr7.2:33218695-33218714 | MS.gene42887:CDS | 35.0% | |
| CCATCACAAGTAAGTAACTT+TGG | - | chr7.2:33218698-33218717 | None:intergenic | 35.0% | |
| CTCAACTGAGTCTGTAAATA+AGG | - | chr7.2:33217583-33217602 | None:intergenic | 35.0% | |
| CTTATTTACAGACTCAGTTG+AGG | + | chr7.2:33217581-33217600 | MS.gene42887:intron | 35.0% | |
| GAACTGAAAAATATGCCCAA+TGG | + | chr7.2:33218659-33218678 | MS.gene42887:CDS | 35.0% | |
| GAAGTTGTTTGAACAAGTAG+TGG | - | chr7.2:33218185-33218204 | None:intergenic | 35.0% | |
| GATGGATCAAACGTTACATT+AGG | - | chr7.2:33217210-33217229 | None:intergenic | 35.0% | |
| GTCATTGTTGTCATTGTTTC+AGG | + | chr7.2:33217993-33218012 | MS.gene42887:intron | 35.0% | |
| GTTCTCTCCTATCAAAACTA+AGG | + | chr7.2:33217137-33217156 | MS.gene42887:intron | 35.0% | |
| GTTTCGATTATAGTGACTAG+GGG | - | chr7.2:33216523-33216542 | None:intergenic | 35.0% | |
| TAGCCTAAGTAATGCTCATT+TGG | + | chr7.2:33216323-33216342 | MS.gene42887:intron | 35.0% | |
| TCACAAAGAATTCAGAGCAA+GGG | + | chr7.2:33215902-33215921 | MS.gene42887:CDS | 35.0% | |
| TCAGTCTCGATATTCTAGAT+GGG | + | chr7.2:33218505-33218524 | MS.gene42887:CDS | 35.0% | |
| TCATAGAAAATCGTGAGGTA+AGG | - | chr7.2:33217906-33217925 | None:intergenic | 35.0% | |
| TCTGGTTATTCATCTATGGT+TGG | - | chr7.2:33217816-33217835 | None:intergenic | 35.0% | |
| TCTTCAATCATCGTCAAGTA+CGG | + | chr7.2:33215957-33215976 | MS.gene42887:intron | 35.0% | |
| TGGGTTACTTATTCCAAACA+CGG | + | chr7.2:33218524-33218543 | MS.gene42887:CDS | 35.0% | |
| TTCAACAAAGCGAAACAATG+TGG | - | chr7.2:33216227-33216246 | None:intergenic | 35.0% | |
| TTCGAATGAATATGTCGTAG+TGG | + | chr7.2:33218448-33218467 | MS.gene42887:CDS | 35.0% | |
| TTGAACAAGTAGTGGTGATT+GGG | - | chr7.2:33218177-33218196 | None:intergenic | 35.0% | |
| TTGTTGGAAATCAAAGTAGG+GGG | - | chr7.2:33217432-33217451 | None:intergenic | 35.0% | |
| TTTAGATTGGGTGTTAGCTA+GGG | + | chr7.2:33216274-33216293 | MS.gene42887:intron | 35.0% | |
| TTTGAACAAGTAGTGGTGAT+TGG | - | chr7.2:33218178-33218197 | None:intergenic | 35.0% | |
| ! | AGGCTCTCAATCAACATTTT+GGG | + | chr7.2:33216957-33216976 | MS.gene42887:intron | 35.0% |
| ! | CTTCTTTTTACGATATGTCC+AGG | - | chr7.2:33216870-33216889 | None:intergenic | 35.0% |
| ! | GTTGATTGAGAGCCTATTTT+TGG | - | chr7.2:33216952-33216971 | None:intergenic | 35.0% |
| ! | TAGGCTCTCAATCAACATTT+TGG | + | chr7.2:33216956-33216975 | MS.gene42887:intron | 35.0% |
| ! | TTTTAGATTGGGTGTTAGCT+AGG | + | chr7.2:33216273-33216292 | MS.gene42887:intron | 35.0% |
| !! | ACCAGAATTGCTTTTCATTG+TGG | + | chr7.2:33217830-33217849 | MS.gene42887:intron | 35.0% |
| !! | GCGCTAAGATGAGTTATTTT+TGG | + | chr7.2:33218258-33218277 | MS.gene42887:CDS | 35.0% |
| !! | TCAATTTTCTGGTGTTTGCA+AGG | + | chr7.2:33218106-33218125 | MS.gene42887:CDS | 35.0% |
| !!! | ACCTTACAAACTGGTTTTGT+GGG | + | chr7.2:33216668-33216687 | MS.gene42887:intron | 35.0% |
| !!! | GCATGTACCTTAGTTTTGAT+AGG | - | chr7.2:33217147-33217166 | None:intergenic | 35.0% |
| AAATGCATTGTTCCAGCTGA+TGG | + | chr7.2:33218959-33218978 | MS.gene42887:CDS | 40.0% | |
| AACTGAAGGCAAGCATAACA+TGG | - | chr7.2:33216761-33216780 | None:intergenic | 40.0% | |
| ACAAAGTCCAAAACAGTCCA+TGG | - | chr7.2:33218554-33218573 | None:intergenic | 40.0% | |
| ACCAATATAGATAGTCCCCA+TGG | + | chr7.2:33217335-33217354 | MS.gene42887:intron | 40.0% | |
| ACCATCTTAGATATGCGATC+AGG | - | chr7.2:33216390-33216409 | None:intergenic | 40.0% | |
| ACCCACACATTACAAGATGT+AGG | + | chr7.2:33216442-33216461 | MS.gene42887:intron | 40.0% | |
| AGCCAATACAGTTGTGATCT+AGG | - | chr7.2:33218998-33219017 | None:intergenic | 40.0% | |
| AGTCTATGAAGCTCACTATG+AGG | + | chr7.2:33216888-33216907 | MS.gene42887:intron | 40.0% | |
| ATTCCAAACACGGAAATCCA+TGG | + | chr7.2:33218534-33218553 | MS.gene42887:CDS | 40.0% | |
| CAAATATGCCACACCAAAAC+AGG | + | chr7.2:33217035-33217054 | MS.gene42887:intron | 40.0% | |
| CAATACAGTTGTGATCTAGG+AGG | - | chr7.2:33218995-33219014 | None:intergenic | 40.0% | |
| CACCTACATCTTGTAATGTG+TGG | - | chr7.2:33216447-33216466 | None:intergenic | 40.0% | |
| CCAATATAGATAGTCCCCAT+GGG | + | chr7.2:33217336-33217355 | MS.gene42887:intron | 40.0% | |
| CCAGAATGTGAAGTGTATTC+AGG | + | chr7.2:33218917-33218936 | MS.gene42887:CDS | 40.0% | |
| CCTGAATACACTTCACATTC+TGG | - | chr7.2:33218920-33218939 | None:intergenic | 40.0% | |
| CTCACAAAGAATTCAGAGCA+AGG | + | chr7.2:33215901-33215920 | MS.gene42887:CDS | 40.0% | |
| CTCCTAGATCACAACTGTAT+TGG | + | chr7.2:33218993-33219012 | MS.gene42887:CDS | 40.0% | |
| GATTATAGTGACTAGGGGAA+GGG | - | chr7.2:33216518-33216537 | None:intergenic | 40.0% | |
| GCATTTCTCACCTTACAAAC+TGG | + | chr7.2:33216659-33216678 | MS.gene42887:intron | 40.0% | |
| TCCTGATCGCATATCTAAGA+TGG | + | chr7.2:33216386-33216405 | MS.gene42887:intron | 40.0% | |
| TGATACCATATCTCGAAAGC+TGG | + | chr7.2:33218067-33218086 | MS.gene42887:CDS | 40.0% | |
| TTAGATTGGGTGTTAGCTAG+GGG | + | chr7.2:33216275-33216294 | MS.gene42887:intron | 40.0% | |
| ! | ACACTTTTCATGCCGAAATC+TGG | - | chr7.2:33217171-33217190 | None:intergenic | 40.0% |
| ! | ACTTTTCATGCCGAAATCTG+GGG | - | chr7.2:33217169-33217188 | None:intergenic | 40.0% |
| ! | CACTTTTCATGCCGAAATCT+GGG | - | chr7.2:33217170-33217189 | None:intergenic | 40.0% |
| ! | GGAGAGATGTAATGATGATG+AGG | - | chr7.2:33217256-33217275 | None:intergenic | 40.0% |
| ! | GTGGCATATTTGTCGTCTTT+TGG | - | chr7.2:33217027-33217046 | None:intergenic | 40.0% |
| ! | GTTTGGTTGTTTCGTTGTGT+GGG | + | chr7.2:33217532-33217551 | MS.gene42887:intron | 40.0% |
| ! | TACACCTATCTCAGCCTTAT+CGG | - | chr7.2:33218606-33218625 | None:intergenic | 40.0% |
| ! | TAGATCACAACTGTATTGGC+TGG | + | chr7.2:33218997-33219016 | MS.gene42887:CDS | 40.0% |
| !! | TGTTGACTTCAGCGAACTTT+CGG | + | chr7.2:33218034-33218053 | MS.gene42887:CDS | 40.0% |
| !!! | CACCTTACAAACTGGTTTTG+TGG | + | chr7.2:33216667-33216686 | MS.gene42887:intron | 40.0% |
| !!! | CCTTACAAACTGGTTTTGTG+GGG | + | chr7.2:33216669-33216688 | MS.gene42887:intron | 40.0% |
| AAGGTACATGCCCCAGATTT+CGG | + | chr7.2:33217156-33217175 | MS.gene42887:intron | 45.0% | |
| AATTCAGAGCAAGGGAGTGA+CGG | + | chr7.2:33215910-33215929 | MS.gene42887:CDS | 45.0% | |
| ACCTATCTGTGTTCGTCTAG+TGG | + | chr7.2:33218287-33218306 | MS.gene42887:CDS | 45.0% | |
| ACTACTTGGAGCTTCCTTCA+TGG | + | chr7.2:33216541-33216560 | MS.gene42887:intron | 45.0% | |
| AGTCCATGGATTTCCGTGTT+TGG | - | chr7.2:33218540-33218559 | None:intergenic | 45.0% | |
| ATCTCATTGCACCCAGCATA+AGG | - | chr7.2:33216583-33216602 | None:intergenic | 45.0% | |
| CCCATGGGGACTATCTATAT+TGG | - | chr7.2:33217339-33217358 | None:intergenic | 45.0% | |
| CCCCACAAAACCAGTTTGTA+AGG | - | chr7.2:33216672-33216691 | None:intergenic | 45.0% | |
| CGATTATAGTGACTAGGGGA+AGG | - | chr7.2:33216519-33216538 | None:intergenic | 45.0% | |
| CTTTCATATCCCCACTTTCC+CGG | - | chr7.2:33218866-33218885 | None:intergenic | 45.0% | |
| GCAGTTGAACCATGACTGAT+AGG | + | chr7.2:33216177-33216196 | MS.gene42887:intron | 45.0% | |
| GGCAAAAAGGATGGTCCATT+GGG | - | chr7.2:33218677-33218696 | None:intergenic | 45.0% | |
| TAAGCTTCATCCATCCACCA+GGG | + | chr7.2:33217302-33217321 | MS.gene42887:intron | 45.0% | |
| TATGATACTTGCAAGGGAGG+TGG | - | chr7.2:33217277-33217296 | None:intergenic | 45.0% | |
| TCCACTAGACGAACACAGAT+AGG | - | chr7.2:33218291-33218310 | None:intergenic | 45.0% | |
| TGGCAAAAAGGATGGTCCAT+TGG | - | chr7.2:33218678-33218697 | None:intergenic | 45.0% | |
| TTAAGCTTCATCCATCCACC+AGG | + | chr7.2:33217301-33217320 | MS.gene42887:intron | 45.0% | |
| TTCGTTGTGTGGGATTGTGA+TGG | + | chr7.2:33217542-33217561 | MS.gene42887:intron | 45.0% | |
| ! | CGTTTGGTTGTTTCGTTGTG+TGG | + | chr7.2:33217531-33217550 | MS.gene42887:intron | 45.0% |
| ! | GTGACGGAGATGATTCTAAG+AGG | + | chr7.2:33215926-33215945 | MS.gene42887:CDS | 45.0% |
| ! | TTGTGATGGGAAGCTTCTTG+TGG | + | chr7.2:33218709-33218728 | MS.gene42887:CDS | 45.0% |
| ! | TTTCTGGTGTTTGCAAGGAG+TGG | + | chr7.2:33218111-33218130 | MS.gene42887:intron | 45.0% |
| !! | CACAACTGTATTGGCTGGAT+TGG | + | chr7.2:33219002-33219021 | MS.gene42887:CDS | 45.0% |
| !! | CGGAAATCCATGGACTGTTT+TGG | + | chr7.2:33218544-33218563 | MS.gene42887:CDS | 45.0% |
| !! | TAGTGGGGTGTTTCCTGTTT+TGG | - | chr7.2:33217051-33217070 | None:intergenic | 45.0% |
| !! | TATTGGTTCTAAGAGACCCC+TGG | - | chr7.2:33217322-33217341 | None:intergenic | 45.0% |
| !!! | ACAAACTGGTTTTGTGGGGT+TGG | + | chr7.2:33216673-33216692 | MS.gene42887:intron | 45.0% |
| !!! | CAAACTGGTTTTGTGGGGTT+GGG | + | chr7.2:33216674-33216693 | MS.gene42887:intron | 45.0% |
| !! | AAATTTGAAAAAATATAAAT+TGG | + | chr7.2:33216137-33216156 | MS.gene42887:intron | 5.0% |
| !! | AATTTGAAAAAATATAAATT+GGG | + | chr7.2:33216138-33216157 | MS.gene42887:intron | 5.0% |
| AAGCTTCATCCATCCACCAG+GGG | + | chr7.2:33217303-33217322 | MS.gene42887:intron | 50.0% | |
| ATTCTTAGGCATGCAAGCCC+TGG | + | chr7.2:33216849-33216868 | MS.gene42887:intron | 50.0% | |
| ATTGCTCAGCGCATGGCATT+TGG | - | chr7.2:33218843-33218862 | None:intergenic | 50.0% | |
| CATTGCACCCAGCATAAGGA+AGG | - | chr7.2:33216579-33216598 | None:intergenic | 50.0% | |
| CTCACCGATAAGGCTGAGAT+AGG | + | chr7.2:33218599-33218618 | MS.gene42887:CDS | 50.0% | |
| GTGCAAAGTCGTGTACGTGA+GGG | + | chr7.2:33216464-33216483 | MS.gene42887:intron | 50.0% | |
| TCCAACGCCTTCCTTATGCT+GGG | + | chr7.2:33216569-33216588 | MS.gene42887:intron | 50.0% | |
| TGCAAAGTCGTGTACGTGAG+GGG | + | chr7.2:33216465-33216484 | MS.gene42887:intron | 50.0% | |
| TTGCTCAGCGCATGGCATTT+GGG | - | chr7.2:33218842-33218861 | None:intergenic | 50.0% | |
| !!! | GGGTGTTTCCTGTTTTGGTG+TGG | - | chr7.2:33217046-33217065 | None:intergenic | 50.0% |
| ATGCCATGCGCTGAGCAATC+CGG | + | chr7.2:33218844-33218863 | MS.gene42887:CDS | 55.0% | |
| CTCCAACGCCTTCCTTATGC+TGG | + | chr7.2:33216568-33216587 | MS.gene42887:intron | 55.0% | |
| CTGAGCAATCCGGGAAAGTG+GGG | + | chr7.2:33218854-33218873 | MS.gene42887:CDS | 55.0% | |
| CTGGTGTTTGCAAGGAGTGG+AGG | + | chr7.2:33218114-33218133 | MS.gene42887:intron | 55.0% | |
| GCTGAGCAATCCGGGAAAGT+GGG | + | chr7.2:33218853-33218872 | MS.gene42887:CDS | 55.0% | |
| GGAAGTCGATGACCATCAGC+TGG | - | chr7.2:33218974-33218993 | None:intergenic | 55.0% | |
| GGTGCAAAGTCGTGTACGTG+AGG | + | chr7.2:33216463-33216482 | MS.gene42887:intron | 55.0% | |
| TCTAAGAGACCCCTGGTGGA+TGG | - | chr7.2:33217315-33217334 | None:intergenic | 55.0% | |
| ! | ACCCAGCATAAGGAAGGCGT+TGG | - | chr7.2:33216573-33216592 | None:intergenic | 55.0% |
| ! | CTAGGGGAAGGGCGCAATTA+AGG | - | chr7.2:33216507-33216526 | None:intergenic | 55.0% |
| !! | CAGCATAAGGAAGGCGTTGG+AGG | - | chr7.2:33216570-33216589 | None:intergenic | 55.0% |
| !! | GCGCGGTAAGCTCGTTTTTC+AGG | - | chr7.2:33218242-33218261 | None:intergenic | 55.0% |
| !! | TGGTTCTAAGAGACCCCTGG+TGG | - | chr7.2:33217319-33217338 | None:intergenic | 55.0% |
| CGCTGAGCAATCCGGGAAAG+TGG | + | chr7.2:33218852-33218871 | MS.gene42887:CDS | 60.0% | |
| TGCCATGCGCTGAGCAATCC+GGG | + | chr7.2:33218845-33218864 | MS.gene42887:CDS | 60.0% | |
| TTCCCGGATTGCTCAGCGCA+TGG | - | chr7.2:33218850-33218869 | None:intergenic | 60.0% | |
| ! | GGCGTTGGAGGTTGCCATGA+AGG | - | chr7.2:33216558-33216577 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.2 | gene | 33215883 | 33219072 | 33215883 | ID=MS.gene42887 |
| chr7.2 | mRNA | 33215883 | 33219072 | 33215883 | ID=MS.gene42887.t1;Parent=MS.gene42887 |
| chr7.2 | exon | 33215883 | 33215973 | 33215883 | ID=MS.gene42887.t1.exon1;Parent=MS.gene42887.t1 |
| chr7.2 | CDS | 33215883 | 33215973 | 33215883 | ID=cds.MS.gene42887.t1;Parent=MS.gene42887.t1 |
| chr7.2 | exon | 33218015 | 33218129 | 33218015 | ID=MS.gene42887.t1.exon2;Parent=MS.gene42887.t1 |
| chr7.2 | CDS | 33218015 | 33218129 | 33218015 | ID=cds.MS.gene42887.t1;Parent=MS.gene42887.t1 |
| chr7.2 | exon | 33218235 | 33218326 | 33218235 | ID=MS.gene42887.t1.exon3;Parent=MS.gene42887.t1 |
| chr7.2 | CDS | 33218235 | 33218326 | 33218235 | ID=cds.MS.gene42887.t1;Parent=MS.gene42887.t1 |
| chr7.2 | exon | 33218447 | 33219072 | 33218447 | ID=MS.gene42887.t1.exon4;Parent=MS.gene42887.t1 |
| chr7.2 | CDS | 33218447 | 33219072 | 33218447 | ID=cds.MS.gene42887.t1;Parent=MS.gene42887.t1 |
| Gene Sequence |
| Protein sequence |
