AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05536

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05536.t1 MTR_6g086625 98.193 332 5 1 1 331 1 332 0.0 676
MS.gene05536.t1 MTR_6g086575 94.864 331 17 0 1 331 1 331 0.0 656
MS.gene05536.t1 MTR_1g077480 90.533 338 25 1 1 331 1 338 0.0 637
MS.gene05536.t1 MTR_1g077520 81.194 335 59 2 3 334 4 337 0.0 577
MS.gene05536.t1 MTR_1g077520 81.325 332 58 2 3 331 4 334 0.0 575
MS.gene05536.t1 MTR_6g069140 76.752 314 67 1 24 331 33 346 0.0 513
MS.gene05536.t1 MTR_7g073640 63.497 326 116 2 7 331 9 332 1.09e-153 437
MS.gene05536.t1 MTR_7g073650 66.993 306 100 1 27 331 26 331 1.29e-153 437
MS.gene05536.t1 MTR_3g094160 67.719 285 91 1 41 325 59 342 5.99e-148 424
MS.gene05536.t1 MTR_1g078410 60.000 230 33 3 1 223 1 178 1.93e-82 248
MS.gene05536.t1 MTR_3g086580 25.505 396 195 13 8 312 3 389 6.82e-23 100
MS.gene05536.t1 MTR_8g089725 27.919 394 184 18 7 313 4 384 1.44e-22 98.6
MS.gene05536.t1 MTR_8g089735 27.919 394 184 18 7 313 4 384 1.88e-22 98.2
MS.gene05536.t1 MTR_8g089745 25.063 395 199 14 4 313 1 383 3.81e-22 97.4
MS.gene05536.t1 MTR_8g089745 25.063 395 199 14 4 313 1 383 7.09e-22 97.1
MS.gene05536.t1 MTR_8g089740 25.897 390 191 15 10 313 2 379 2.59e-21 95.5
MS.gene05536.t1 MTR_2g096530 27.221 349 164 12 51 312 40 385 2.81e-21 95.1
MS.gene05536.t1 MTR_3g086580 29.609 179 97 6 161 312 26 202 5.80e-13 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05536.t1 AT5G08370 71.037 328 80 2 4 331 8 320 1.94e-174 490
MS.gene05536.t1 AT5G08370 76.897 290 67 0 42 331 5 294 4.59e-174 488
MS.gene05536.t1 AT5G08380 61.329 331 126 1 3 331 4 334 4.05e-153 436
MS.gene05536.t1 AT3G56310 67.000 300 95 3 43 340 65 362 2.69e-148 425
MS.gene05536.t1 AT5G08380 61.342 313 119 1 3 313 4 316 2.81e-146 416
MS.gene05536.t1 AT3G56310 62.000 300 86 4 43 340 65 338 7.13e-130 377
MS.gene05536.t1 AT3G26380 25.788 349 169 12 51 312 42 387 7.73e-22 96.3
MS.gene05536.t1 AT3G26380 25.788 349 169 12 51 312 42 387 1.77e-21 95.9

Find 92 sgRNAs with CRISPR-Local

Find 137 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAGCTGCTCGATTATT+AGG 0.206376 6.2:-84843837 MS.gene05536:CDS
CAACATATAACTCTTAATTT+TGG 0.213476 6.2:+84843800 None:intergenic
TTAAATATGTTAGGGAAATA+TGG 0.256152 6.2:-84842952 MS.gene05536:intron
ATGCCAAAACATTTGCTTCT+TGG 0.258381 6.2:-84842713 MS.gene05536:CDS
CCAACTATTTCCCACACTTT+TGG 0.260055 6.2:+84842245 None:intergenic
TTATTATCTTTCCCTTTATA+TGG 0.265504 6.2:-84841464 MS.gene05536:CDS
ATCGTGCCCATTTCAGCATT+TGG 0.278804 6.2:-84841823 MS.gene05536:CDS
TGCCAAAACATTTGCTTCTT+GGG 0.290074 6.2:-84842712 MS.gene05536:intron
GGGTACAAGTATATCAATTT+AGG 0.295779 6.2:-84843379 MS.gene05536:intron
TTTCCAACTTCGAGCATATC+AGG 0.305679 6.2:+84841869 None:intergenic
AAGAGTTATATGTTGCAAAA+TGG 0.307994 6.2:-84843792 MS.gene05536:CDS
TGCAGATAAACTTGGAGTTC+AGG 0.311238 6.2:-84841525 MS.gene05536:intron
ATATTACAACCAACTAATAA+AGG 0.326535 6.2:+84841694 None:intergenic
TTTAATAAGGCTTCACTCAT+TGG 0.327142 6.2:+84842414 None:intergenic
CAAACTTAAACACCATATAA+AGG 0.336028 6.2:+84841452 None:intergenic
CAGGAGATATTGAAGATAAC+TGG 0.351324 6.2:-84842215 MS.gene05536:CDS
CTAATGCCCAAATGCTGAAA+TGG 0.353093 6.2:+84841816 None:intergenic
CAAAAGCAACAATGATTTAG+AGG 0.357578 6.2:-84841492 MS.gene05536:CDS
TCGTGCCCATTTCAGCATTT+GGG 0.362441 6.2:-84841822 MS.gene05536:CDS
TACCCAAGAAGCAAATGTTT+TGG 0.362595 6.2:+84842710 None:intergenic
TATGATAATTGTGAAAATAA+TGG 0.367657 6.2:-84842561 MS.gene05536:CDS
TGGAATAGTTGGAACCATTT+CGG 0.372287 6.2:-84843578 MS.gene05536:CDS
GAGTGAAGCCTTATTAAAAT+CGG 0.376993 6.2:-84842409 MS.gene05536:CDS
TATTACAACCAACTAATAAA+GGG 0.382437 6.2:+84841695 None:intergenic
TGATGTTCAGATGGAATAGT+TGG 0.389098 6.2:-84843589 MS.gene05536:intron
TAATAGATGTAAATGACAAA+TGG 0.395220 6.2:-84842037 MS.gene05536:CDS
TGAAGGAAACGTTGAAGCCT+TGG 0.402252 6.2:+84842926 None:intergenic
GCAGATAAACTTGGAGTTCA+GGG 0.405966 6.2:-84841524 MS.gene05536:intron
AAATAGGCCCCTTTATTAGT+TGG 0.414998 6.2:-84841703 MS.gene05536:intron
GAAAGTTTAATCCGAGATAC+AGG 0.426792 6.2:-84843542 MS.gene05536:intron
GCTGATGCGATGGTGTCAAC+TGG 0.433263 6.2:-84843415 MS.gene05536:CDS
AAACTTAAACACCATATAAA+GGG 0.436354 6.2:+84841453 None:intergenic
TCAACTGGACTTGCTGCCCT+AGG 0.444646 6.2:-84843400 MS.gene05536:CDS
CATTTATATCACAGCCGAAA+TGG 0.445979 6.2:+84843564 None:intergenic
CATCGGAAAGGCTTGAAGTT+GGG 0.448224 6.2:-84842876 MS.gene05536:CDS
TAGAGCAATGGCTAGATTGA+TGG 0.453710 6.2:-84843913 None:intergenic
GGAAATAGTTGGAGAACAAC+AGG 0.462081 6.2:-84842234 MS.gene05536:CDS
AATAGATGTAAATGACAAAT+GGG 0.464657 6.2:-84842036 MS.gene05536:CDS
GATATGCTCGAAGTTGGAAA+TGG 0.467367 6.2:-84841866 MS.gene05536:CDS
ATTTCATGTCCTAGTGATCC+AGG 0.469966 6.2:+84842741 None:intergenic
TAATGCCCAAATGCTGAAAT+GGG 0.470549 6.2:+84841817 None:intergenic
GACAAATGGGCATCTTATGC+TGG 0.477215 6.2:-84842023 MS.gene05536:CDS
ATATTGAAGATAACTGGAAT+AGG 0.480224 6.2:-84842209 MS.gene05536:intron
TGTGGTATTGCAGATAAACT+TGG 0.480571 6.2:-84841533 MS.gene05536:intron
TTGGGAATTTATTCAGATGC+CGG 0.482913 6.2:-84842858 MS.gene05536:CDS
CAGCATTTGGGCATTAGCTA+AGG 0.486215 6.2:-84841810 MS.gene05536:intron
AATTGATATACTTGTACCCT+AGG 0.490789 6.2:+84843383 None:intergenic
TCTTCTTCTCTATGTGTGAA+TGG 0.495440 6.2:-84842377 MS.gene05536:intron
AAGGCTTCAACGTTTCCTTC+AGG 0.495513 6.2:-84842924 MS.gene05536:CDS
ACTTGTAGTAAACGTATGCC+TGG 0.499229 6.2:-84842759 MS.gene05536:CDS
GATCCTGATATGCTCGAAGT+TGG 0.500070 6.2:-84841872 MS.gene05536:CDS
TCATCGGAAAGGCTTGAAGT+TGG 0.502672 6.2:-84842877 MS.gene05536:CDS
AGTGAAGCCTTATTAAAATC+GGG 0.508984 6.2:-84842408 MS.gene05536:CDS
GAAGGAAACGTTGAAGCCTT+GGG 0.511297 6.2:+84842927 None:intergenic
ATGGTATAAGTGTTAGAGAA+AGG 0.512588 6.2:-84842542 MS.gene05536:intron
AATCGAGCAGCTGAAGATGA+TGG 0.516977 6.2:+84843843 None:intergenic
CTCTAGCTCATTATATTCAT+CGG 0.518908 6.2:-84842893 MS.gene05536:CDS
AATAAGGCTTCACTCATTGG+TGG 0.521866 6.2:+84842417 None:intergenic
TAATTACCATTCCATCCTCC+AGG 0.523855 6.2:+84841999 None:intergenic
CCAAAAGTGTGGGAAATAGT+TGG 0.526021 6.2:-84842245 MS.gene05536:CDS
CAACTGGACTTGCTGCCCTA+GGG 0.527150 6.2:-84843399 MS.gene05536:CDS
TGGGAATTTATTCAGATGCC+GGG 0.530152 6.2:-84842857 MS.gene05536:intron
TATATGTTGCAAAATGGACT+TGG 0.531723 6.2:-84843786 MS.gene05536:CDS
AGCAACATGGGCCAAAAGTG+TGG 0.542837 6.2:-84842256 MS.gene05536:CDS
CTTATGCTGGACCTGGAGGA+TGG 0.545149 6.2:-84842010 MS.gene05536:CDS
ATGGGAAGATCCAGCAACAT+GGG 0.549059 6.2:-84842268 MS.gene05536:CDS
TGGGCATCTTATGCTGGACC+TGG 0.550800 6.2:-84842017 MS.gene05536:CDS
TTATTTGAAACATAGGGGAT+GGG 0.561757 6.2:-84842286 MS.gene05536:intron
AAACGTATGCCTGGATCACT+AGG 0.565228 6.2:-84842750 MS.gene05536:CDS
AAACATATATACCTGTATCT+CGG 0.565473 6.2:+84843531 None:intergenic
TATCATTTCAGCTGATGCGA+TGG 0.569529 6.2:-84843425 MS.gene05536:intron
GATGGGAAGATCCAGCAACA+TGG 0.570848 6.2:-84842269 MS.gene05536:CDS
TTAGGGAAATATGGTTCCCA+AGG 0.571959 6.2:-84842943 MS.gene05536:intron
AGAACTTAATCGAGACTCAC+AGG 0.572244 6.2:-84843124 MS.gene05536:intron
GCTAGAGCTTTAATTCCTGA+AGG 0.574804 6.2:+84842909 None:intergenic
ACTTGGTCAGACACCTCCCA+TGG 0.576039 6.2:-84843769 MS.gene05536:CDS
TGGTTGTAATATTCAAACAA+TGG 0.580473 6.2:-84841683 MS.gene05536:CDS
GCTCATTATATTCATCGGAA+AGG 0.586081 6.2:-84842888 MS.gene05536:CDS
CTTGGTCAGACACCTCCCAT+GGG 0.589037 6.2:-84843768 MS.gene05536:CDS
GCTGGACCTGGAGGATGGAA+TGG 0.600529 6.2:-84842005 MS.gene05536:intron
ATGCTCGAAGTTGGAAATGG+AGG 0.603679 6.2:-84841863 MS.gene05536:CDS
GCAACATGGGCCAAAAGTGT+GGG 0.608316 6.2:-84842255 MS.gene05536:CDS
ATTACAACCAACTAATAAAG+GGG 0.610550 6.2:+84841696 None:intergenic
GAAGTTATTGCAGTAAACCA+AGG 0.635887 6.2:-84841628 MS.gene05536:intron
AAGCCTTATTAAAATCGGGA+AGG 0.639835 6.2:-84842404 MS.gene05536:CDS
ATTGATATACTTGTACCCTA+GGG 0.641607 6.2:+84843384 None:intergenic
GCATCTTATGCTGGACCTGG+AGG 0.645529 6.2:-84842014 MS.gene05536:CDS
GAGGGTATAGCATACCCCAT+GGG 0.653031 6.2:+84843753 None:intergenic
CAATAATATTCAGCAACACG+AGG 0.675415 6.2:+84843874 None:intergenic
AAATGGAGGCATGACAACAG+AGG 0.691145 6.2:-84841849 MS.gene05536:CDS
GGTATAGCATACCCCATGGG+AGG 0.697835 6.2:+84843756 None:intergenic
TTGGTCAGACACCTCCCATG+GGG 0.730500 6.2:-84843767 MS.gene05536:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTGTAAAAATAATAGTTT+AGG + chr6.2:84841879-84841898 None:intergenic 10.0%
!! ATTGTAAAAATAATAGTTTA+GGG + chr6.2:84841878-84841897 None:intergenic 10.0%
!! TCATAAATATATAATTGATT+AGG + chr6.2:84841757-84841776 None:intergenic 10.0%
!! AAAATAAACATACAAATCAA+TGG + chr6.2:84842296-84842315 None:intergenic 15.0%
!! GTGTCTATTTAAAAAAAAAT+AGG - chr6.2:84842332-84842351 MS.gene05536:intron 15.0%
!! TATACTTTCATGTATTTAAT+TGG + chr6.2:84841728-84841747 None:intergenic 15.0%
!! TATGATAATTGTGAAAATAA+TGG - chr6.2:84842802-84842821 MS.gene05536:intron 15.0%
!! TCAAATAATGTATGTATATA+TGG + chr6.2:84842681-84842700 None:intergenic 15.0%
!!! AATTTCTTATTTGAAACATA+GGG - chr6.2:84843071-84843090 MS.gene05536:intron 15.0%
!!! TAATTTCTTATTTGAAACAT+AGG - chr6.2:84843070-84843089 MS.gene05536:intron 15.0%
!!! TTGTTTTTAACTATTTTACT+CGG - chr6.2:84843634-84843653 MS.gene05536:intron 15.0%
!! AAATTTAATATGTTCATACC+CGG + chr6.2:84842527-84842546 None:intergenic 20.0%
!! AACAAAATAAAGAGTAAGTA+TGG + chr6.2:84842048-84842067 None:intergenic 20.0%
!! AATAGATGTAAATGACAAAT+GGG - chr6.2:84843327-84843346 MS.gene05536:intron 20.0%
!! AGAAAAATTTGAACCAATAT+TGG + chr6.2:84842760-84842779 None:intergenic 20.0%
!! ATATATTTATGATGTTCAGA+TGG - chr6.2:84841765-84841784 MS.gene05536:intron 20.0%
!! ATATTACAACCAACTAATAA+AGG + chr6.2:84843672-84843691 None:intergenic 20.0%
!! ATTTGAATTTGAATGAACAA+TGG + chr6.2:84841654-84841673 None:intergenic 20.0%
!! GAGAATCATAAAAGAAAAAA+TGG + chr6.2:84841681-84841700 None:intergenic 20.0%
!! TAATAGATGTAAATGACAAA+TGG - chr6.2:84843326-84843345 MS.gene05536:intron 20.0%
!! TATTACAACCAACTAATAAA+GGG + chr6.2:84843671-84843690 None:intergenic 20.0%
!! TTAAATATGTTAGGGAAATA+TGG - chr6.2:84842411-84842430 MS.gene05536:CDS 20.0%
!! TTATTATCTTTCCCTTTATA+TGG - chr6.2:84843899-84843918 MS.gene05536:CDS 20.0%
!!! ATTGGTTCAAATTTTTCTTT+AGG - chr6.2:84842762-84842781 MS.gene05536:CDS 20.0%
!!! ATTTCTTATTTGAAACATAG+GGG - chr6.2:84843072-84843091 MS.gene05536:intron 20.0%
!!! CAACATATAACTCTTAATTT+TGG + chr6.2:84841566-84841585 None:intergenic 20.0%
!!! TTGGTTCAAATTTTTCTTTA+GGG - chr6.2:84842763-84842782 MS.gene05536:CDS 20.0%
! AAACATATATACCTGTATCT+CGG + chr6.2:84841835-84841854 None:intergenic 25.0%
! AAGAGTTATATGTTGCAAAA+TGG - chr6.2:84841571-84841590 MS.gene05536:intron 25.0%
! ACAAGTATATCAATTTAGGT+AGG - chr6.2:84841988-84842007 MS.gene05536:intron 25.0%
! ATATTGAAGATAACTGGAAT+AGG - chr6.2:84843154-84843173 MS.gene05536:intron 25.0%
! ATGAGAATGACAAATAAAGA+GGG + chr6.2:84841631-84841650 None:intergenic 25.0%
! ATTACAACCAACTAATAAAG+GGG + chr6.2:84843670-84843689 None:intergenic 25.0%
! CATTCATAAAATTACTAGTG+AGG + chr6.2:84843395-84843414 None:intergenic 25.0%
! TATTACTTTGTCTCAACAAT+AGG + chr6.2:84843601-84843620 None:intergenic 25.0%
! TGGTTGTAATATTCAAACAA+TGG - chr6.2:84843680-84843699 MS.gene05536:intron 25.0%
! TTTCATATGTTGTGTAAATC+AGG - chr6.2:84842920-84842939 MS.gene05536:CDS 25.0%
!! CTATTTTACTCGGTTTAAAT+AGG - chr6.2:84843644-84843663 MS.gene05536:intron 25.0%
!! CTGACTAGTTAAATATGTTA+GGG - chr6.2:84842403-84842422 MS.gene05536:CDS 25.0%
!! CTTATGTTGTTTACCAATAT+TGG - chr6.2:84842744-84842763 MS.gene05536:CDS 25.0%
!! TCTGACTAGTTAAATATGTT+AGG - chr6.2:84842402-84842421 MS.gene05536:CDS 25.0%
!! TTTGCGTAATAATTTAGCTT+AGG - chr6.2:84843224-84843243 MS.gene05536:intron 25.0%
!! TTTTTCTTCAGATGATTGTT+GGG - chr6.2:84842215-84842234 MS.gene05536:CDS 25.0%
!!! TTTTTTCTTCAGATGATTGT+TGG - chr6.2:84842214-84842233 MS.gene05536:CDS 25.0%
AAACATTAATGACACATACG+AGG + chr6.2:84843463-84843482 None:intergenic 30.0%
AATTGATATACTTGTACCCT+AGG + chr6.2:84841983-84842002 None:intergenic 30.0%
AGTATATCAATTTAGGTAGG+TGG - chr6.2:84841991-84842010 MS.gene05536:intron 30.0%
AGTGATCAACAATCATATTC+AGG + chr6.2:84842561-84842580 None:intergenic 30.0%
ATGGTATAAGTGTTAGAGAA+AGG - chr6.2:84842821-84842840 MS.gene05536:intron 30.0%
ATTGATATACTTGTACCCTA+GGG + chr6.2:84841982-84842001 None:intergenic 30.0%
CAAAAGCAACAATGATTTAG+AGG - chr6.2:84843871-84843890 MS.gene05536:CDS 30.0%
CTATTATAGAAGTCATGCTA+GGG + chr6.2:84843312-84843331 None:intergenic 30.0%
GATGAGAATGACAAATAAAG+AGG + chr6.2:84841632-84841651 None:intergenic 30.0%
GGGTACAAGTATATCAATTT+AGG - chr6.2:84841984-84842003 MS.gene05536:intron 30.0%
TCTATTATAGAAGTCATGCT+AGG + chr6.2:84843313-84843332 None:intergenic 30.0%
TTTAATAAGGCTTCACTCAT+TGG + chr6.2:84842952-84842971 None:intergenic 30.0%
! CTCTAGCTCATTATATTCAT+CGG - chr6.2:84842470-84842489 MS.gene05536:intron 30.0%
! TATATGTTGCAAAATGGACT+TGG - chr6.2:84841577-84841596 MS.gene05536:intron 30.0%
! TCGTATGTGTCATTAATGTT+TGG - chr6.2:84843462-84843481 MS.gene05536:intron 30.0%
! TTATTTGAAACATAGGGGAT+GGG - chr6.2:84843077-84843096 MS.gene05536:intron 30.0%
!! AGTGAAGCCTTATTAAAATC+GGG - chr6.2:84842955-84842974 MS.gene05536:intron 30.0%
!! GAGTGAAGCCTTATTAAAAT+CGG - chr6.2:84842954-84842973 MS.gene05536:intron 30.0%
AAATAGGCCCCTTTATTAGT+TGG - chr6.2:84843660-84843679 MS.gene05536:intron 35.0%
AGGGATGGAATAAAGTTAGT+TGG + chr6.2:84843293-84843312 None:intergenic 35.0%
ATGCCAAAACATTTGCTTCT+TGG - chr6.2:84842650-84842669 MS.gene05536:intron 35.0%
CAATAATATTCAGCAACACG+AGG + chr6.2:84841492-84841511 None:intergenic 35.0%
CAGGAGATATTGAAGATAAC+TGG - chr6.2:84843148-84843167 MS.gene05536:intron 35.0%
CATTTATATCACAGCCGAAA+TGG + chr6.2:84841802-84841821 None:intergenic 35.0%
GAAAGTTTAATCCGAGATAC+AGG - chr6.2:84841821-84841840 MS.gene05536:CDS 35.0%
GAAGTTATTGCAGTAAACCA+AGG - chr6.2:84843735-84843754 MS.gene05536:intron 35.0%
GCTCATTATATTCATCGGAA+AGG - chr6.2:84842475-84842494 MS.gene05536:intron 35.0%
TAATGCCCAAATGCTGAAAT+GGG + chr6.2:84843549-84843568 None:intergenic 35.0%
TCAAGAAAGTCTTCTTACCT+TGG + chr6.2:84843755-84843774 None:intergenic 35.0%
TCTTCTTCTCTATGTGTGAA+TGG - chr6.2:84842986-84843005 MS.gene05536:intron 35.0%
TGAAACTTACACGTTTCTTG+TGG - chr6.2:84843812-84843831 MS.gene05536:CDS 35.0%
TGATGTTCAGATGGAATAGT+TGG - chr6.2:84841774-84841793 MS.gene05536:intron 35.0%
TGCCAAAACATTTGCTTCTT+GGG - chr6.2:84842651-84842670 MS.gene05536:intron 35.0%
TGGAATAGTTGGAACCATTT+CGG - chr6.2:84841785-84841804 MS.gene05536:intron 35.0%
TGTGGTATTGCAGATAAACT+TGG - chr6.2:84843830-84843849 MS.gene05536:CDS 35.0%
TTGGGAATTTATTCAGATGC+CGG - chr6.2:84842505-84842524 MS.gene05536:intron 35.0%
! CTTATTTGAAACATAGGGGA+TGG - chr6.2:84843076-84843095 MS.gene05536:intron 35.0%
! TACCCAAGAAGCAAATGTTT+TGG + chr6.2:84842656-84842675 None:intergenic 35.0%
!! AAGCCTTATTAAAATCGGGA+AGG - chr6.2:84842959-84842978 MS.gene05536:intron 35.0%
!! TGACCTTCCCGATTTTAATA+AGG + chr6.2:84842965-84842984 None:intergenic 35.0%
AATAAGGCTTCACTCATTGG+TGG + chr6.2:84842949-84842968 None:intergenic 40.0%
ACTTGTAGTAAACGTATGCC+TGG - chr6.2:84842604-84842623 MS.gene05536:intron 40.0%
AGAACTTAATCGAGACTCAC+AGG - chr6.2:84842239-84842258 MS.gene05536:CDS 40.0%
ATTTCATGTCCTAGTGATCC+AGG + chr6.2:84842625-84842644 None:intergenic 40.0%
CTAATGCCCAAATGCTGAAA+TGG + chr6.2:84843550-84843569 None:intergenic 40.0%
GATATGCTCGAAGTTGGAAA+TGG - chr6.2:84843497-84843516 MS.gene05536:intron 40.0%
GCAGATAAACTTGGAGTTCA+GGG - chr6.2:84843839-84843858 MS.gene05536:CDS 40.0%
GGAAATAGTTGGAGAACAAC+AGG - chr6.2:84843129-84843148 MS.gene05536:CDS 40.0%
GTGTGAATGGTGAGTTAGAT+TGG - chr6.2:84842999-84843018 MS.gene05536:intron 40.0%
TAATTACCATTCCATCCTCC+AGG + chr6.2:84843367-84843386 None:intergenic 40.0%
TATAGAAGTCATGCTAGGGA+TGG + chr6.2:84843308-84843327 None:intergenic 40.0%
TATCATTTCAGCTGATGCGA+TGG - chr6.2:84841938-84841957 MS.gene05536:intron 40.0%
TCTTCAGCTGCTCGATTATT+AGG - chr6.2:84841526-84841545 MS.gene05536:intron 40.0%
TGCAGATAAACTTGGAGTTC+AGG - chr6.2:84843838-84843857 MS.gene05536:CDS 40.0%
TGGGAATTTATTCAGATGCC+GGG - chr6.2:84842506-84842525 MS.gene05536:intron 40.0%
TTAGGGAAATATGGTTCCCA+AGG - chr6.2:84842420-84842439 MS.gene05536:CDS 40.0%
TTTCCAACTTCGAGCATATC+AGG + chr6.2:84843497-84843516 None:intergenic 40.0%
! CCAAAAGTGTGGGAAATAGT+TGG - chr6.2:84843118-84843137 MS.gene05536:intron 40.0%
! CCAACTATTTCCCACACTTT+TGG + chr6.2:84843121-84843140 None:intergenic 40.0%
! GCTAGAGCTTTAATTCCTGA+AGG + chr6.2:84842457-84842476 None:intergenic 40.0%
AAACGTATGCCTGGATCACT+AGG - chr6.2:84842613-84842632 MS.gene05536:intron 45.0%
AAGGCTTCAACGTTTCCTTC+AGG - chr6.2:84842439-84842458 MS.gene05536:intron 45.0%
AATCGAGCAGCTGAAGATGA+TGG + chr6.2:84841523-84841542 None:intergenic 45.0%
ATCGTGCCCATTTCAGCATT+TGG - chr6.2:84843540-84843559 MS.gene05536:intron 45.0%
ATGCTCGAAGTTGGAAATGG+AGG - chr6.2:84843500-84843519 MS.gene05536:intron 45.0%
ATGGGAAGATCCAGCAACAT+GGG - chr6.2:84843095-84843114 MS.gene05536:intron 45.0%
CAATTTAGGTAGGTGGCAAG+TGG - chr6.2:84841998-84842017 MS.gene05536:intron 45.0%
CAGCATTTGGGCATTAGCTA+AGG - chr6.2:84843553-84843572 MS.gene05536:CDS 45.0%
CATCGGAAAGGCTTGAAGTT+GGG - chr6.2:84842487-84842506 MS.gene05536:intron 45.0%
GAAGGAAACGTTGAAGCCTT+GGG + chr6.2:84842439-84842458 None:intergenic 45.0%
GACAAATGGGCATCTTATGC+TGG - chr6.2:84843340-84843359 MS.gene05536:intron 45.0%
GATCCTGATATGCTCGAAGT+TGG - chr6.2:84843491-84843510 MS.gene05536:intron 45.0%
TCATCGGAAAGGCTTGAAGT+TGG - chr6.2:84842486-84842505 MS.gene05536:intron 45.0%
TCGTGCCCATTTCAGCATTT+GGG - chr6.2:84843541-84843560 MS.gene05536:intron 45.0%
TGAAGGAAACGTTGAAGCCT+TGG + chr6.2:84842440-84842459 None:intergenic 45.0%
! AAATGGAGGCATGACAACAG+AGG - chr6.2:84843514-84843533 MS.gene05536:intron 45.0%
AGCAACATGGGCCAAAAGTG+TGG - chr6.2:84843107-84843126 MS.gene05536:intron 50.0%
GATGGGAAGATCCAGCAACA+TGG - chr6.2:84843094-84843113 MS.gene05536:intron 50.0%
! ACACTTTTGGCCCATGTTGC+TGG + chr6.2:84843108-84843127 None:intergenic 50.0%
! AGAGGGTATAGCATACCCCA+TGG + chr6.2:84841614-84841633 None:intergenic 50.0%
! GAGGGTATAGCATACCCCAT+GGG + chr6.2:84841613-84841632 None:intergenic 50.0%
! GCAACATGGGCCAAAAGTGT+GGG - chr6.2:84843108-84843127 MS.gene05536:intron 50.0%
ACTTGGTCAGACACCTCCCA+TGG - chr6.2:84841594-84841613 MS.gene05536:intron 55.0%
CTTATGCTGGACCTGGAGGA+TGG - chr6.2:84843353-84843372 MS.gene05536:intron 55.0%
CTTGGTCAGACACCTCCCAT+GGG - chr6.2:84841595-84841614 MS.gene05536:intron 55.0%
GCATCTTATGCTGGACCTGG+AGG - chr6.2:84843349-84843368 MS.gene05536:intron 55.0%
GGTATAGCATACCCCATGGG+AGG + chr6.2:84841610-84841629 None:intergenic 55.0%
TGGGCATCTTATGCTGGACC+TGG - chr6.2:84843346-84843365 MS.gene05536:intron 55.0%
TTGGTCAGACACCTCCCATG+GGG - chr6.2:84841596-84841615 MS.gene05536:intron 55.0%
! GCTGATGCGATGGTGTCAAC+TGG - chr6.2:84841948-84841967 MS.gene05536:intron 55.0%
!! CAACTGGACTTGCTGCCCTA+GGG - chr6.2:84841964-84841983 MS.gene05536:intron 55.0%
!! TCAACTGGACTTGCTGCCCT+AGG - chr6.2:84841963-84841982 MS.gene05536:intron 55.0%
GCTGGACCTGGAGGATGGAA+TGG - chr6.2:84843358-84843377 MS.gene05536:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 84841457 84843928 84841457 ID=MS.gene05536
chr6.2 mRNA 84841457 84843928 84841457 ID=MS.gene05536.t1;Parent=MS.gene05536
chr6.2 exon 84843768 84843928 84843768 ID=MS.gene05536.t1.exon1;Parent=MS.gene05536.t1
chr6.2 CDS 84843768 84843928 84843768 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84843543 84843601 84843543 ID=MS.gene05536.t1.exon2;Parent=MS.gene05536.t1
chr6.2 CDS 84843543 84843601 84843543 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84843380 84843436 84843380 ID=MS.gene05536.t1.exon3;Parent=MS.gene05536.t1
chr6.2 CDS 84843380 84843436 84843380 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84843125 84843159 84843125 ID=MS.gene05536.t1.exon4;Parent=MS.gene05536.t1
chr6.2 CDS 84843125 84843159 84843125 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84842858 84842961 84842858 ID=MS.gene05536.t1.exon5;Parent=MS.gene05536.t1
chr6.2 CDS 84842858 84842961 84842858 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84842713 84842788 84842713 ID=MS.gene05536.t1.exon6;Parent=MS.gene05536.t1
chr6.2 CDS 84842713 84842788 84842713 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84842543 84842601 84842543 ID=MS.gene05536.t1.exon7;Parent=MS.gene05536.t1
chr6.2 CDS 84842543 84842601 84842543 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84842378 84842443 84842378 ID=MS.gene05536.t1.exon8;Parent=MS.gene05536.t1
chr6.2 CDS 84842378 84842443 84842378 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84842210 84842293 84842210 ID=MS.gene05536.t1.exon9;Parent=MS.gene05536.t1
chr6.2 CDS 84842210 84842293 84842210 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84842006 84842070 84842006 ID=MS.gene05536.t1.exon10;Parent=MS.gene05536.t1
chr6.2 CDS 84842006 84842070 84842006 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84841811 84841893 84841811 ID=MS.gene05536.t1.exon11;Parent=MS.gene05536.t1
chr6.2 CDS 84841811 84841893 84841811 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84841629 84841719 84841629 ID=MS.gene05536.t1.exon12;Parent=MS.gene05536.t1
chr6.2 CDS 84841629 84841719 84841629 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
chr6.2 exon 84841457 84841542 84841457 ID=MS.gene05536.t1.exon13;Parent=MS.gene05536.t1
chr6.2 CDS 84841457 84841542 84841457 ID=cds.MS.gene05536.t1;Parent=MS.gene05536.t1
Gene Sequence

>MS.gene05536

ATGGCTAGATTGATGGTGCTTGCATTTTGTATCCTCGTGTTGCTGAATATTATTGCAAGTGTTCCATCATCTTCAGCTGCTCGATTATTAGGAAACAACAATGTAACCAAAATTAAGAGTTATATGTTGCAAAATGGACTTGGTCAGACACCTCCCATGGGGTATGCTATACCCTCTTTATTTGTCATTCTCATCCATTGTTCATTCAAATTCAAATATATCCATTTTTTCTTTTATGATTCTCACATAAAAATATACATAATTTTCTCCAATTAAATACATGAAAGTATATAGTTTCCTAATCAATTATATATTTATGATGTTCAGATGGAATAGTTGGAACCATTTCGGCTGTGATATAAATGAAAGTTTAATCCGAGATACAGGTATATATGTTTATTATCATTATTATGATGTTCCCTAAACTATTATTTTTACAATTTAAATATGTTTAATTCAATTGAACTAAACTATATTGATTTATCATTTCAGCTGATGCGATGGTGTCAACTGGACTTGCTGCCCTAGGGTACAAGTATATCAATTTAGGTAGGTGGCAAGTGGCAACTTCAATGATCATTACTGCTACCATACTTACTCTTTATTTTGTTGATGAGTGAATTTTTAGTTAATAATTTTTTAAAGTTTCTTGTAGAGAATTTTTTTAAATATTAATGTATTTCTTTATTATGTGTAAAATATTATATAAACATTTATTTATTTATGAAAATATATTTTAATAATATAAATTTGCATTTTTTTTCTTCAGATGATTGTTGGGCAGAACTTAATCGAGACTCACAGGTATTTAATAAATATCGTCTTTAAAAAAAATTCCATTGATTTGTATGTTTATTTTCTTCATGTACTTTTATGTGTCTATTTAAAAAAAAATAGGTTAAGTGAATTTAAATTAATAGATTAATATATCATAGTGTTTATAACTCTGACTAGTTAAATATGTTAGGGAAATATGGTTCCCAAGGCTTCAACGTTTCCTTCAGGAATTAAAGCTCTAGCTCATTATATTCATCGGAAAGGCTTGAAGTTGGGAATTTATTCAGATGCCGGGTATGAACATATTAAATTTTATTTGATGATCCTGAATATGATTGTTGATCACTTGCAATTGCTATGCAGAAATCAAACTTGTAGTAAACGTATGCCTGGATCACTAGGACATGAAATACAAGATGCCAAAACATTTGCTTCTTGGGTAAACCATATATACATACATTATTTGAAAATCATTTTTCGCTTTTATCAACATTATATTCTATTTATAATCTTATGTTGTTTACCAATATTGGTTCAAATTTTTCTTTAGGGAGTCGATTATTTGAAGTATGATAATTGTGAAAATAATGGTATAAGTGTTAGAGAAAGGTATTTAATTTATTTTCTTCAAATTCAAATAGTTATATCAACATACTTAATATTTTGTAAAAAATAGTACTTACTAGTTTCATATGTTGTGTAAATCAGGTATCCACCAATGAGTGAAGCCTTATTAAAATCGGGAAGGTCAATCTTCTTCTCTATGTGTGAATGGTGAGTTAGATTGGTGATAATGTTTCTCATACATAATTGATATTTCATTTTCTATTTCATTCTAATTTCTTATTTGAAACATAGGGGATGGGAAGATCCAGCAACATGGGCCAAAAGTGTGGGAAATAGTTGGAGAACAACAGGAGATATTGAAGATAACTGGAATAGGTAAAATTAATATGATAACTCACATTCTCACATTTTACATTGTTTCTTTTTGCGTAATAATTTAGCTTAGGAAAATAAATTTTCAATTCTTTTCTTCATTTTCTTATATTATGACCAACTAACTTTATTCCATCCCTAGCATGACTTCTATAATAGATGTAAATGACAAATGGGCATCTTATGCTGGACCTGGAGGATGGAATGGTAATTAACTAACCTCACTAGTAATTTTATGAATGTTAAATTTAAGATCATTACAAGTACATCAAACTTCAATATTAATTCCTCGTATGTGTCATTAATGTTTGGATATTAGATCCTGATATGCTCGAAGTTGGAAATGGAGGCATGACAACAGAGGAATATCGTGCCCATTTCAGCATTTGGGCATTAGCTAAGGTGCATGAAATAATTTTTATATACCTATTGTTGAGACAAAGTAATATGTCTTGAATTCGTTGTTTTTAACTATTTTACTCGGTTTAAATAGGCCCCTTTATTAGTTGGTTGTAATATTCAAACAATGGATAATATCACGTATGAATTGATAAGCAACTCTGAAGTTATTGCAGTAAACCAAGGTAAGAAGACTTTCTTGAAAGATAAATGTATTAATTTCTTCAATAAAGAATGCTTTGAAACTTACACGTTTCTTGTGGTATTGCAGATAAACTTGGAGTTCAGGGAAAGAAAGTCAAAAGCAACAATGATTTAGAGGTGACTTTATTATCTTTCCCTTTATATGGTGTTTAA
Protein sequence

>MS.gene05536.t1

MARLMVLAFCILVLLNIIASVPSSSAARLLGNNNVTKIKSYMLQNGLGQTPPMGWNSWNHFGCDINESLIRDTADAMVSTGLAALGYKYINLDDCWAELNRDSQGNMVPKASTFPSGIKALAHYIHRKGLKLGIYSDAGNQTCSKRMPGSLGHEIQDAKTFASWGVDYLKYDNCENNGISVRERYPPMSEALLKSGRSIFFSMCEWGWEDPATWAKSVGNSWRTTGDIEDNWNSMTSIIDVNDKWASYAGPGGWNDPDMLEVGNGGMTTEEYRAHFSIWALAKAPLLVGCNIQTMDNITYELISNSEVIAVNQDKLGVQGKKVKSNNDLEVTLLSFPLYGV