AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61401


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61401.t1 MTR_6g086625 97.304 408 10 1 1 407 1 408 0.0 818
MS.gene61401.t1 MTR_6g086575 93.857 407 25 0 1 407 1 407 0.0 791
MS.gene61401.t1 MTR_1g077480 90.580 414 32 1 1 407 1 414 0.0 773
MS.gene61401.t1 MTR_1g077520 80.988 405 73 2 3 404 4 407 0.0 692
MS.gene61401.t1 MTR_6g069140 77.519 387 81 1 24 404 33 419 0.0 634
MS.gene61401.t1 MTR_1g077520 81.325 332 58 2 3 331 4 334 0.0 574
MS.gene61401.t1 MTR_7g073640 60.599 401 153 4 7 404 9 407 5.77e-180 507
MS.gene61401.t1 MTR_7g073650 62.992 381 138 3 27 404 26 406 7.24e-180 507
MS.gene61401.t1 MTR_3g094160 61.995 371 136 3 41 407 59 428 2.90e-174 493
MS.gene61401.t1 MTR_1g078410 63.380 213 19 3 1 206 1 161 2.94e-82 250
MS.gene61401.t1 MTR_0279s0030 51.220 123 58 2 284 404 101 223 2.32e-35 130
MS.gene61401.t1 MTR_0279s0030 51.220 123 58 2 284 404 185 307 3.24e-34 129
MS.gene61401.t1 MTR_0279s0030 51.220 123 58 2 284 404 250 372 8.61e-34 130
MS.gene61401.t1 MTR_8g089725 25.437 515 255 21 7 405 4 505 5.58e-25 107
MS.gene61401.t1 MTR_8g089735 25.243 515 256 21 7 405 4 505 4.37e-24 104
MS.gene61401.t1 MTR_3g086580 25.253 396 196 13 8 312 3 389 1.84e-21 97.1
MS.gene61401.t1 MTR_8g089745 24.810 395 200 14 4 313 1 383 8.31e-21 94.4
MS.gene61401.t1 MTR_8g089745 24.810 395 200 14 4 313 1 383 1.86e-20 94.0
MS.gene61401.t1 MTR_8g089740 25.641 390 192 15 10 313 2 379 4.55e-20 92.8
MS.gene61401.t1 MTR_2g096530 26.934 349 165 12 51 312 40 385 4.80e-20 92.8
MS.gene61401.t1 MTR_3g094180 48.611 72 34 1 317 385 7 78 1.54e-13 66.6
MS.gene61401.t1 MTR_3g086580 29.050 179 98 6 161 312 26 202 7.20e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61401.t1 AT5G08370 68.069 404 114 2 4 407 8 396 0.0 581
MS.gene61401.t1 AT5G08370 72.404 366 101 0 42 407 5 370 0.0 579
MS.gene61401.t1 AT5G08380 59.360 406 160 3 3 404 4 408 0.0 511
MS.gene61401.t1 AT3G56310 63.760 367 128 4 43 405 65 430 1.72e-174 494
MS.gene61401.t1 AT3G56310 59.673 367 119 5 43 405 65 406 8.81e-156 446
MS.gene61401.t1 AT5G08380 61.022 313 120 1 3 313 4 316 2.93e-144 413
MS.gene61401.t1 AT3G26380 25.501 349 170 12 51 312 42 387 2.87e-20 92.8
MS.gene61401.t1 AT3G26380 25.501 349 170 12 51 312 42 387 5.85e-20 92.4

Find 103 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCAGCTGCTCGATTATT+AGG 0.206376 6.3:-79977672 MS.gene61401:CDS
CAACATATAACTCTTAATTT+TGG 0.213476 6.3:+79977635 None:intergenic
TCAACACAATCATTGGTTTC+TGG 0.218008 6.3:-79974837 MS.gene61401:CDS
TAGTTGATGCAAGAGATTTA+TGG 0.246206 6.3:-79974952 MS.gene61401:CDS
TTAAATATGTTAGGGAAATA+TGG 0.256152 6.3:-79976786 MS.gene61401:intron
ATGCCAAAACATTTGCTTCT+TGG 0.258381 6.3:-79976547 MS.gene61401:CDS
CCAACTATTTCCCACACTTT+TGG 0.260055 6.3:+79976079 None:intergenic
TGGAATAGTTGGAACCATTT+TGG 0.262795 6.3:-79977415 MS.gene61401:CDS
ACAAAGTAGCAGTGGTCTTA+TGG 0.274504 6.3:-79975042 MS.gene61401:CDS
ATCGTGCCCATTTCAGCATT+TGG 0.278804 6.3:-79975657 MS.gene61401:CDS
TGCCAAAACATTTGCTTCTT+GGG 0.290074 6.3:-79976546 MS.gene61401:intron
CATTTATATCACAACCAAAA+TGG 0.295557 6.3:+79977401 None:intergenic
GGGTACAAGTATATCAATTT+AGG 0.295779 6.3:-79977216 MS.gene61401:intron
TTTCCAACTTCGAGCATATC+AGG 0.305679 6.3:+79975703 None:intergenic
AAGAGTTATATGTTGCAAAA+TGG 0.307994 6.3:-79977627 MS.gene61401:CDS
TGCAGATAAACTTGGAGTTC+AGG 0.311238 6.3:-79975359 MS.gene61401:intron
TTTAATAAGGCTTCACTCAT+TGG 0.327142 6.3:+79976248 None:intergenic
CAGGAGATATTGAAGATAAC+TGG 0.351324 6.3:-79976049 MS.gene61401:CDS
CTAATGCCCAAATGCTGAAA+TGG 0.353093 6.3:+79975650 None:intergenic
CAAAAGCAACAATGATTTAG+AGG 0.357578 6.3:-79975326 MS.gene61401:intron
AGTTGATGCAAGAGATTTAT+GGG 0.361924 6.3:-79974951 MS.gene61401:CDS
TCGTGCCCATTTCAGCATTT+GGG 0.362441 6.3:-79975656 MS.gene61401:CDS
TACCCAAGAAGCAAATGTTT+TGG 0.362595 6.3:+79976544 None:intergenic
TGTATGTTCTGACACCTAAA+AGG 0.366627 6.3:-79974776 MS.gene61401:CDS
TATGATAATTGTGAAAATAA+TGG 0.367657 6.3:-79976395 MS.gene61401:CDS
GAGTGAAGCCTTATTAAAAT+CGG 0.376993 6.3:-79976243 MS.gene61401:CDS
TAATAGATGTAAATGACAAA+TGG 0.395220 6.3:-79975871 MS.gene61401:CDS
GCAGCACTCAACACAATCAT+TGG 0.401559 6.3:-79974844 MS.gene61401:intron
TGAAGGAAACGTTGAAGCCT+TGG 0.402252 6.3:+79976760 None:intergenic
GCAGATAAACTTGGAGTTCA+GGG 0.405966 6.3:-79975358 MS.gene61401:intron
TGATGTTCAGATGGAATAGT+TGG 0.418115 6.3:-79977426 MS.gene61401:intron
AAATAGGCCTCTTTATTAGT+TGG 0.419468 6.3:-79975537 MS.gene61401:intron
ACTGCATCCTGGTCAGATAT+AGG 0.424252 6.3:-79974992 MS.gene61401:CDS
TGTCAGAACATACATCTTGC+AGG 0.425297 6.3:+79974785 None:intergenic
GAAAGTTTAATCCGAGATAC+AGG 0.426792 6.3:-79977379 MS.gene61401:intron
GCTGATGCGATGGTGTCAAC+TGG 0.433263 6.3:-79977252 MS.gene61401:CDS
TCAACTGGACTTGCTGCCCT+AGG 0.444646 6.3:-79977237 MS.gene61401:CDS
CATCGGAAAGGCTTGAAGTT+GGG 0.448224 6.3:-79976710 MS.gene61401:CDS
TAGAGCAATGGCTAGATTGA+TGG 0.453710 6.3:-79977748 None:intergenic
GGAAATAGTTGGAGAACAAC+AGG 0.462081 6.3:-79976068 MS.gene61401:CDS
AATAGATGTAAATGACAAAT+GGG 0.464657 6.3:-79975870 MS.gene61401:CDS
GATATGCTCGAAGTTGGAAA+TGG 0.467367 6.3:-79975700 MS.gene61401:CDS
ATTTCATGTCCTAGTGATCC+AGG 0.469966 6.3:+79976575 None:intergenic
TAATGCCCAAATGCTGAAAT+GGG 0.470549 6.3:+79975651 None:intergenic
GACAAATGGGCATCTTATGC+TGG 0.477215 6.3:-79975857 MS.gene61401:CDS
ATATTGAAGATAACTGGAAT+AGG 0.480224 6.3:-79976043 MS.gene61401:intron
TGTGGTATTGCAGATAAACT+TGG 0.480571 6.3:-79975367 MS.gene61401:intron
TTGGGAATTTATTCAGATGC+CGG 0.482913 6.3:-79976692 MS.gene61401:CDS
CAGCATTTGGGCATTAGCTA+AGG 0.486215 6.3:-79975644 MS.gene61401:intron
AATTGATATACTTGTACCCT+AGG 0.490789 6.3:+79977220 None:intergenic
TCTTCTTCTCTATGTGTGAA+TGG 0.495440 6.3:-79976211 MS.gene61401:intron
AAGGCTTCAACGTTTCCTTC+AGG 0.495513 6.3:-79976758 MS.gene61401:CDS
ACTTGTAGTAAACGTATGCC+TGG 0.499229 6.3:-79976593 MS.gene61401:CDS
GATCCTGATATGCTCGAAGT+TGG 0.500070 6.3:-79975706 MS.gene61401:CDS
TCATCGGAAAGGCTTGAAGT+TGG 0.502672 6.3:-79976711 MS.gene61401:CDS
ATTACAACCAACTAATAAAG+AGG 0.506505 6.3:+79975530 None:intergenic
AGTGAAGCCTTATTAAAATC+GGG 0.508984 6.3:-79976242 MS.gene61401:CDS
GAAGGAAACGTTGAAGCCTT+GGG 0.511297 6.3:+79976761 None:intergenic
ATGGTATAAGTGTTAGAGAA+AGG 0.512588 6.3:-79976376 MS.gene61401:intron
AATCGAGCAGCTGAAGATGA+TGG 0.516977 6.3:+79977678 None:intergenic
TCAGATATAGGTCTGAAATC+AGG 0.516980 6.3:-79974980 MS.gene61401:CDS
CTCTAGCTCATTATATTCAT+CGG 0.518908 6.3:-79976727 MS.gene61401:CDS
AATAAGGCTTCACTCATTGG+TGG 0.521866 6.3:+79976251 None:intergenic
GCTACTTTGTTATTATTGAG+AGG 0.523143 6.3:+79975055 None:intergenic
TAATTACCATTCCATCCTCC+AGG 0.523855 6.3:+79975833 None:intergenic
CCAAAAGTGTGGGAAATAGT+TGG 0.526021 6.3:-79976079 MS.gene61401:CDS
CAACTGGACTTGCTGCCCTA+GGG 0.527150 6.3:-79977236 MS.gene61401:CDS
TGGGAATTTATTCAGATGCC+GGG 0.530152 6.3:-79976691 MS.gene61401:intron
TATATGTTGCAAAATGGACT+TGG 0.531723 6.3:-79977621 MS.gene61401:CDS
AGCAACATGGGCCAAAAGTG+TGG 0.542837 6.3:-79976090 MS.gene61401:CDS
CTTATGCTGGACCTGGAGGA+TGG 0.545149 6.3:-79975844 MS.gene61401:CDS
CTATGGATATAGGTTTGGGC+AGG 0.545776 6.3:-79975079 MS.gene61401:intron
ATGGGAAGATCCAGCAACAT+GGG 0.549059 6.3:-79976102 MS.gene61401:CDS
TGGGCATCTTATGCTGGACC+TGG 0.550800 6.3:-79975851 MS.gene61401:CDS
ATGCAACGGTAACTGCATCC+TGG 0.556007 6.3:-79975003 MS.gene61401:CDS
TGGTTGTAATATTCAAGCAA+TGG 0.558395 6.3:-79975517 MS.gene61401:CDS
TTATTTGAAACATAGGGGAT+GGG 0.561757 6.3:-79976120 MS.gene61401:intron
AAACGTATGCCTGGATCACT+AGG 0.565228 6.3:-79976584 MS.gene61401:CDS
AAACATATATACCTGTATCT+CGG 0.565473 6.3:+79977368 None:intergenic
TATCATTTCAGCTGATGCGA+TGG 0.569529 6.3:-79977262 MS.gene61401:intron
GATGGGAAGATCCAGCAACA+TGG 0.570848 6.3:-79976103 MS.gene61401:CDS
TTAGGGAAATATGGTTCCCA+AGG 0.571959 6.3:-79976777 MS.gene61401:intron
AGAACTTAATCGAGACTCAC+AGG 0.572244 6.3:-79976959 MS.gene61401:intron
GCTAGAGCTTTAATTCCTGA+AGG 0.574804 6.3:+79976743 None:intergenic
ACTTGGTCAGACACCTCCCA+TGG 0.576039 6.3:-79977604 MS.gene61401:CDS
GCTCATTATATTCATCGGAA+AGG 0.586081 6.3:-79976722 MS.gene61401:CDS
CTTGGTCAGACACCTCCCAT+GGG 0.589037 6.3:-79977603 MS.gene61401:CDS
GCTGGACCTGGAGGATGGAA+TGG 0.600529 6.3:-79975839 MS.gene61401:intron
ATGCTCGAAGTTGGAAATGG+AGG 0.603679 6.3:-79975697 MS.gene61401:CDS
CAATAATAACAAAGTAGCAG+TGG 0.606485 6.3:-79975050 MS.gene61401:CDS
GCAACATGGGCCAAAAGTGT+GGG 0.608316 6.3:-79976089 MS.gene61401:CDS
TAGAAGTTCATCAAATGCAA+CGG 0.621482 6.3:-79975017 MS.gene61401:CDS
TTTCAGACCTATATCTGACC+AGG 0.624392 6.3:+79974985 None:intergenic
GAAGTTATTGCAGTAAACCA+AGG 0.635887 6.3:-79975462 MS.gene61401:intron
AAGCCTTATTAAAATCGGGA+AGG 0.639835 6.3:-79976238 MS.gene61401:CDS
ATTGATATACTTGTACCCTA+GGG 0.641607 6.3:+79977221 None:intergenic
GCATCTTATGCTGGACCTGG+AGG 0.645529 6.3:-79975848 MS.gene61401:CDS
GAGGGTATAGCATACCCCAT+GGG 0.653031 6.3:+79977588 None:intergenic
CAATAATATTCAGCAACACG+AGG 0.675415 6.3:+79977709 None:intergenic
AAATGGAGGCATGACAACAG+AGG 0.691145 6.3:-79975683 MS.gene61401:CDS
GGTATAGCATACCCCATGGG+AGG 0.697835 6.3:+79977591 None:intergenic
TGATGCAAGAGATTTATGGG+AGG 0.716729 6.3:-79974948 MS.gene61401:intron
TTGGTCAGACACCTCCCATG+GGG 0.730500 6.3:-79977602 MS.gene61401:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTCTATTTAAAAAAAAAAT+AGG - chr6.3:79975646-79975665 MS.gene61401:CDS 10.0%
!! AAAATAAACATACAAATCAA+TGG + chr6.3:79975609-79975628 None:intergenic 15.0%
!! AACTATAAAAATAATAGCTT+AGG + chr6.3:79975190-79975209 None:intergenic 15.0%
!! ACTATAAAAATAATAGCTTA+GGG + chr6.3:79975189-79975208 None:intergenic 15.0%
!! CAAAACAATTTAAATTCATT+TGG - chr6.3:79977620-79977639 MS.gene61401:CDS 15.0%
!! TATACTTTCATGTATTTAAT+TGG + chr6.3:79975041-79975060 None:intergenic 15.0%
!! TATGATAATTGTGAAAATAA+TGG - chr6.3:79976116-79976135 MS.gene61401:intron 15.0%
!! TCAAATAATGTATGTATATA+TGG + chr6.3:79975995-79976014 None:intergenic 15.0%
!!! AATTTCTTATTTGAAACATA+GGG - chr6.3:79976385-79976404 MS.gene61401:CDS 15.0%
!!! TAATTTCTTATTTGAAACAT+AGG - chr6.3:79976384-79976403 MS.gene61401:CDS 15.0%
!!! TTGTTTTTAACTATTTTACT+CGG - chr6.3:79976948-79976967 MS.gene61401:intron 15.0%
!! AAACTTAAACACCATATAAA+GGG + chr6.3:79977227-79977246 None:intergenic 20.0%
!! AAATTTAATATGTTCATACC+CGG + chr6.3:79975841-79975860 None:intergenic 20.0%
!! AATAGATGTAAATGACAAAT+GGG - chr6.3:79976641-79976660 MS.gene61401:intron 20.0%
!! ACACAAATGATTTGATTATA+AGG + chr6.3:79977344-79977363 None:intergenic 20.0%
!! ACTAAAAATTCTATGGATAT+AGG - chr6.3:79977422-79977441 MS.gene61401:intron 20.0%
!! ACTTCTTACTAAAAATTCTA+TGG - chr6.3:79977415-79977434 MS.gene61401:CDS 20.0%
!! AGAAAAATTTGAACCAATAT+TGG + chr6.3:79976074-79976093 None:intergenic 20.0%
!! ATTTGAATTTGAATGAACAA+TGG + chr6.3:79974967-79974986 None:intergenic 20.0%
!! GAGAATCATAAAAGAAAAAA+TGG + chr6.3:79974994-79975013 None:intergenic 20.0%
!! TAATAGATGTAAATGACAAA+TGG - chr6.3:79976640-79976659 MS.gene61401:intron 20.0%
!! TATTACTTTGTCTTAACAAT+AGG + chr6.3:79976915-79976934 None:intergenic 20.0%
!! TTAAATATGTTAGGGAAATA+TGG - chr6.3:79975725-79975744 MS.gene61401:intron 20.0%
!! TTAACTTTCAAATCAATACA+TGG - chr6.3:79977281-79977300 MS.gene61401:intron 20.0%
!! TTATTATCTTTCCCTTTATA+TGG - chr6.3:79977213-79977232 MS.gene61401:intron 20.0%
!!! ATTGGTTCAAATTTTTCTTT+AGG - chr6.3:79976076-79976095 MS.gene61401:CDS 20.0%
!!! ATTTCTTATTTGAAACATAG+GGG - chr6.3:79976386-79976405 MS.gene61401:CDS 20.0%
!!! CAACATATAACTCTTAATTT+TGG + chr6.3:79974879-79974898 None:intergenic 20.0%
!!! TTAAATTCATTTGGTTTTGA+TGG - chr6.3:79977629-79977648 MS.gene61401:CDS 20.0%
!!! TTGGTTCAAATTTTTCTTTA+GGG - chr6.3:79976077-79976096 MS.gene61401:CDS 20.0%
! AAACATATATACCTGTATCT+CGG + chr6.3:79975146-79975165 None:intergenic 25.0%
! AAATTCTATGGATATAGGTT+TGG - chr6.3:79977427-79977446 MS.gene61401:intron 25.0%
! AAGAGTTATATGTTGCAAAA+TGG - chr6.3:79974884-79974903 MS.gene61401:intron 25.0%
! AATTCTATGGATATAGGTTT+GGG - chr6.3:79977428-79977447 MS.gene61401:intron 25.0%
! ACAAGTATATCAATTTAGGT+AGG - chr6.3:79975299-79975318 MS.gene61401:intron 25.0%
! ATATTGAAGATAACTGGAAT+AGG - chr6.3:79976468-79976487 MS.gene61401:intron 25.0%
! ATGAGAATGACAAATAAAGA+GGG + chr6.3:79974944-79974963 None:intergenic 25.0%
! ATTACAACCAACTAATAAAG+AGG + chr6.3:79976984-79977003 None:intergenic 25.0%
! CAAACTTAAACACCATATAA+AGG + chr6.3:79977228-79977247 None:intergenic 25.0%
! CATTCATAAAATTACTAGTG+AGG + chr6.3:79976709-79976728 None:intergenic 25.0%
! CATTTATATCACAACCAAAA+TGG + chr6.3:79975113-79975132 None:intergenic 25.0%
! TAGTATCATTATAAGTTGTG+AGG + chr6.3:79977254-79977273 None:intergenic 25.0%
! TTATATTCATGATGTTCAGA+TGG - chr6.3:79975076-79975095 MS.gene61401:intron 25.0%
! TTTCATATGTTGTGTAAATC+AGG - chr6.3:79976234-79976253 MS.gene61401:CDS 25.0%
!! CTATTTTACTCGGTTTAAAT+AGG - chr6.3:79976958-79976977 MS.gene61401:intron 25.0%
!! CTGACTAGTTAAATATGTTA+GGG - chr6.3:79975717-79975736 MS.gene61401:intron 25.0%
!! CTTATGTTGTTTACCAATAT+TGG - chr6.3:79976058-79976077 MS.gene61401:CDS 25.0%
!! TCTGACTAGTTAAATATGTT+AGG - chr6.3:79975716-79975735 MS.gene61401:intron 25.0%
!! TTTGCGTAATAATTTAGCTT+AGG - chr6.3:79976538-79976557 MS.gene61401:intron 25.0%
AAACATTAATGACACATACG+AGG + chr6.3:79976777-79976796 None:intergenic 30.0%
AAATAGGCCTCTTTATTAGT+TGG - chr6.3:79976974-79976993 MS.gene61401:CDS 30.0%
AATTGATATACTTGTACCCT+AGG + chr6.3:79975294-79975313 None:intergenic 30.0%
AGTATATCAATTTAGGTAGG+TGG - chr6.3:79975302-79975321 MS.gene61401:intron 30.0%
AGTGATCAACAATCATATTC+AGG + chr6.3:79975875-79975894 None:intergenic 30.0%
ATGGTATAAGTGTTAGAGAA+AGG - chr6.3:79976135-79976154 MS.gene61401:intron 30.0%
ATTGATATACTTGTACCCTA+GGG + chr6.3:79975293-79975312 None:intergenic 30.0%
CAAAAGCAACAATGATTTAG+AGG - chr6.3:79977185-79977204 MS.gene61401:intron 30.0%
CAATAATAACAAAGTAGCAG+TGG - chr6.3:79977461-79977480 MS.gene61401:intron 30.0%
CTATTATAGAAGTCATGCTA+GGG + chr6.3:79976626-79976645 None:intergenic 30.0%
GATGAGAATGACAAATAAAG+AGG + chr6.3:79974945-79974964 None:intergenic 30.0%
GGGTACAAGTATATCAATTT+AGG - chr6.3:79975295-79975314 MS.gene61401:intron 30.0%
TAGAAGTTCATCAAATGCAA+CGG - chr6.3:79977494-79977513 MS.gene61401:intron 30.0%
TCTATTATAGAAGTCATGCT+AGG + chr6.3:79976627-79976646 None:intergenic 30.0%
TGGTTGTAATATTCAAGCAA+TGG - chr6.3:79976994-79977013 MS.gene61401:intron 30.0%
TTTAATAAGGCTTCACTCAT+TGG + chr6.3:79976266-79976285 None:intergenic 30.0%
! AGTTGATGCAAGAGATTTAT+GGG - chr6.3:79977560-79977579 MS.gene61401:intron 30.0%
! CTCTAGCTCATTATATTCAT+CGG - chr6.3:79975784-79975803 MS.gene61401:intron 30.0%
! TAGTTGATGCAAGAGATTTA+TGG - chr6.3:79977559-79977578 MS.gene61401:intron 30.0%
! TATATGTTGCAAAATGGACT+TGG - chr6.3:79974890-79974909 MS.gene61401:intron 30.0%
! TCGTATGTGTCATTAATGTT+TGG - chr6.3:79976776-79976795 MS.gene61401:CDS 30.0%
! TTATTTGAAACATAGGGGAT+GGG - chr6.3:79976391-79976410 MS.gene61401:CDS 30.0%
!! AGTGAAGCCTTATTAAAATC+GGG - chr6.3:79976269-79976288 MS.gene61401:intron 30.0%
!! CATTAGTTTGCATATATCAC+AGG + chr6.3:79977318-79977337 None:intergenic 30.0%
!! GAGTGAAGCCTTATTAAAAT+CGG - chr6.3:79976268-79976287 MS.gene61401:intron 30.0%
!! GCTACTTTGTTATTATTGAG+AGG + chr6.3:79977459-79977478 None:intergenic 30.0%
!!! TTTTTTCCCAGATGATTGTT+GGG - chr6.3:79975528-79975547 MS.gene61401:CDS 30.0%
!!! TTTTTTTCCCAGATGATTGT+TGG - chr6.3:79975527-79975546 MS.gene61401:CDS 30.0%
AGGGATGGAATAAAGTTAGT+TGG + chr6.3:79976607-79976626 None:intergenic 35.0%
ATGCCAAAACATTTGCTTCT+TGG - chr6.3:79975964-79975983 MS.gene61401:intron 35.0%
CAATAATATTCAGCAACACG+AGG + chr6.3:79974805-79974824 None:intergenic 35.0%
CAGGAGATATTGAAGATAAC+TGG - chr6.3:79976462-79976481 MS.gene61401:intron 35.0%
GAAAGTTTAATCCGAGATAC+AGG - chr6.3:79975132-79975151 MS.gene61401:intron 35.0%
GAAGTTATTGCAGTAAACCA+AGG - chr6.3:79977049-79977068 MS.gene61401:intron 35.0%
GCTCATTATATTCATCGGAA+AGG - chr6.3:79975789-79975808 MS.gene61401:intron 35.0%
TAATGCCCAAATGCTGAAAT+GGG + chr6.3:79976863-79976882 None:intergenic 35.0%
TCAAGAAAGTCTTCTTACCT+TGG + chr6.3:79977069-79977088 None:intergenic 35.0%
TCTTCTTCTCTATGTGTGAA+TGG - chr6.3:79976300-79976319 MS.gene61401:intron 35.0%
TGAAACTTACACGTTTCTTG+TGG - chr6.3:79977126-79977145 MS.gene61401:intron 35.0%
TGATGTTCAGATGGAATAGT+TGG - chr6.3:79975085-79975104 MS.gene61401:intron 35.0%
TGCCAAAACATTTGCTTCTT+GGG - chr6.3:79975965-79975984 MS.gene61401:intron 35.0%
TGTATGTTCTGACACCTAAA+AGG - chr6.3:79977735-79977754 MS.gene61401:CDS 35.0%
TGTGGTATTGCAGATAAACT+TGG - chr6.3:79977144-79977163 MS.gene61401:intron 35.0%
TTGGGAATTTATTCAGATGC+CGG - chr6.3:79975819-79975838 MS.gene61401:intron 35.0%
! CTTATTTGAAACATAGGGGA+TGG - chr6.3:79976390-79976409 MS.gene61401:CDS 35.0%
! TACCCAAGAAGCAAATGTTT+TGG + chr6.3:79975970-79975989 None:intergenic 35.0%
! TCAGATATAGGTCTGAAATC+AGG - chr6.3:79977531-79977550 MS.gene61401:intron 35.0%
! TGGAATAGTTGGAACCATTT+TGG - chr6.3:79975096-79975115 MS.gene61401:intron 35.0%
!! AAGCCTTATTAAAATCGGGA+AGG - chr6.3:79976273-79976292 MS.gene61401:intron 35.0%
!! TCAACACAATCATTGGTTTC+TGG - chr6.3:79977674-79977693 MS.gene61401:CDS 35.0%
!! TGACCTTCCCGATTTTAATA+AGG + chr6.3:79976279-79976298 None:intergenic 35.0%
AATAAGGCTTCACTCATTGG+TGG + chr6.3:79976263-79976282 None:intergenic 40.0%
ACTTGTAGTAAACGTATGCC+TGG - chr6.3:79975918-79975937 MS.gene61401:intron 40.0%
AGAACTTAATCGAGACTCAC+AGG - chr6.3:79975552-79975571 MS.gene61401:intron 40.0%
ATTTCATGTCCTAGTGATCC+AGG + chr6.3:79975939-79975958 None:intergenic 40.0%
CTAATGCCCAAATGCTGAAA+TGG + chr6.3:79976864-79976883 None:intergenic 40.0%
GATATGCTCGAAGTTGGAAA+TGG - chr6.3:79976811-79976830 MS.gene61401:intron 40.0%
GCAGATAAACTTGGAGTTCA+GGG - chr6.3:79977153-79977172 MS.gene61401:intron 40.0%
GGAAATAGTTGGAGAACAAC+AGG - chr6.3:79976443-79976462 MS.gene61401:intron 40.0%
GTGTGAATGGTGAGTTAGAT+TGG - chr6.3:79976313-79976332 MS.gene61401:intron 40.0%
TAATTACCATTCCATCCTCC+AGG + chr6.3:79976681-79976700 None:intergenic 40.0%
TATAGAAGTCATGCTAGGGA+TGG + chr6.3:79976622-79976641 None:intergenic 40.0%
TATCATTTCAGCTGATGCGA+TGG - chr6.3:79975249-79975268 MS.gene61401:intron 40.0%
TCTTCAGCTGCTCGATTATT+AGG - chr6.3:79974839-79974858 MS.gene61401:CDS 40.0%
TGATGCAAGAGATTTATGGG+AGG - chr6.3:79977563-79977582 MS.gene61401:intron 40.0%
TGCAGATAAACTTGGAGTTC+AGG - chr6.3:79977152-79977171 MS.gene61401:intron 40.0%
TGGGAATTTATTCAGATGCC+GGG - chr6.3:79975820-79975839 MS.gene61401:intron 40.0%
TGTCAGAACATACATCTTGC+AGG + chr6.3:79977729-79977748 None:intergenic 40.0%
TTAGGGAAATATGGTTCCCA+AGG - chr6.3:79975734-79975753 MS.gene61401:intron 40.0%
TTATGGGAGGTAAGAGAGTT+AGG - chr6.3:79977576-79977595 MS.gene61401:intron 40.0%
TTTCAGACCTATATCTGACC+AGG + chr6.3:79977529-79977548 None:intergenic 40.0%
TTTCCAACTTCGAGCATATC+AGG + chr6.3:79976811-79976830 None:intergenic 40.0%
! ACAAAGTAGCAGTGGTCTTA+TGG - chr6.3:79977469-79977488 MS.gene61401:intron 40.0%
! CCAAAAGTGTGGGAAATAGT+TGG - chr6.3:79976432-79976451 MS.gene61401:intron 40.0%
! CCAACTATTTCCCACACTTT+TGG + chr6.3:79976435-79976454 None:intergenic 40.0%
! GCTAGAGCTTTAATTCCTGA+AGG + chr6.3:79975771-79975790 None:intergenic 40.0%
AAACGTATGCCTGGATCACT+AGG - chr6.3:79975927-79975946 MS.gene61401:intron 45.0%
AAGGCTTCAACGTTTCCTTC+AGG - chr6.3:79975753-79975772 MS.gene61401:intron 45.0%
AATCGAGCAGCTGAAGATGA+TGG + chr6.3:79974836-79974855 None:intergenic 45.0%
ACTGCATCCTGGTCAGATAT+AGG - chr6.3:79977519-79977538 MS.gene61401:intron 45.0%
AGTTCTGCCCAACAATCATC+TGG + chr6.3:79975538-79975557 None:intergenic 45.0%
ATCGTGCCCATTTCAGCATT+TGG - chr6.3:79976854-79976873 MS.gene61401:intron 45.0%
ATGCTCGAAGTTGGAAATGG+AGG - chr6.3:79976814-79976833 MS.gene61401:intron 45.0%
ATGGGAAGATCCAGCAACAT+GGG - chr6.3:79976409-79976428 MS.gene61401:CDS 45.0%
CAATTTAGGTAGGTGGCAAG+TGG - chr6.3:79975309-79975328 MS.gene61401:intron 45.0%
CAGCATTTGGGCATTAGCTA+AGG - chr6.3:79976867-79976886 MS.gene61401:intron 45.0%
CATCGGAAAGGCTTGAAGTT+GGG - chr6.3:79975801-79975820 MS.gene61401:intron 45.0%
CTATGGATATAGGTTTGGGC+AGG - chr6.3:79977432-79977451 MS.gene61401:intron 45.0%
GAAGGAAACGTTGAAGCCTT+GGG + chr6.3:79975753-79975772 None:intergenic 45.0%
GACAAATGGGCATCTTATGC+TGG - chr6.3:79976654-79976673 MS.gene61401:intron 45.0%
GATCCTGATATGCTCGAAGT+TGG - chr6.3:79976805-79976824 MS.gene61401:intron 45.0%
GCAGCACTCAACACAATCAT+TGG - chr6.3:79977667-79977686 MS.gene61401:CDS 45.0%
GTTCTGCCCAACAATCATCT+GGG + chr6.3:79975537-79975556 None:intergenic 45.0%
TCATCGGAAAGGCTTGAAGT+TGG - chr6.3:79975800-79975819 MS.gene61401:intron 45.0%
TCGTGCCCATTTCAGCATTT+GGG - chr6.3:79976855-79976874 MS.gene61401:intron 45.0%
TGAAGGAAACGTTGAAGCCT+TGG + chr6.3:79975754-79975773 None:intergenic 45.0%
! AAATGGAGGCATGACAACAG+AGG - chr6.3:79976828-79976847 MS.gene61401:intron 45.0%
AGCAACATGGGCCAAAAGTG+TGG - chr6.3:79976421-79976440 MS.gene61401:intron 50.0%
ATGCAACGGTAACTGCATCC+TGG - chr6.3:79977508-79977527 MS.gene61401:intron 50.0%
GATGGGAAGATCCAGCAACA+TGG - chr6.3:79976408-79976427 MS.gene61401:CDS 50.0%
! ACACTTTTGGCCCATGTTGC+TGG + chr6.3:79976422-79976441 None:intergenic 50.0%
! AGAGGGTATAGCATACCCCA+TGG + chr6.3:79974927-79974946 None:intergenic 50.0%
! GAGGGTATAGCATACCCCAT+GGG + chr6.3:79974926-79974945 None:intergenic 50.0%
! GCAACATGGGCCAAAAGTGT+GGG - chr6.3:79976422-79976441 MS.gene61401:intron 50.0%
ACTTGGTCAGACACCTCCCA+TGG - chr6.3:79974907-79974926 MS.gene61401:intron 55.0%
CTTATGCTGGACCTGGAGGA+TGG - chr6.3:79976667-79976686 MS.gene61401:intron 55.0%
CTTGGTCAGACACCTCCCAT+GGG - chr6.3:79974908-79974927 MS.gene61401:intron 55.0%
GCATCTTATGCTGGACCTGG+AGG - chr6.3:79976663-79976682 MS.gene61401:intron 55.0%
GGTATAGCATACCCCATGGG+AGG + chr6.3:79974923-79974942 None:intergenic 55.0%
TGGGCATCTTATGCTGGACC+TGG - chr6.3:79976660-79976679 MS.gene61401:intron 55.0%
TTGGTCAGACACCTCCCATG+GGG - chr6.3:79974909-79974928 MS.gene61401:intron 55.0%
! GCTGATGCGATGGTGTCAAC+TGG - chr6.3:79975259-79975278 MS.gene61401:intron 55.0%
!! CAACTGGACTTGCTGCCCTA+GGG - chr6.3:79975275-79975294 MS.gene61401:intron 55.0%
!! TCAACTGGACTTGCTGCCCT+AGG - chr6.3:79975274-79975293 MS.gene61401:intron 55.0%
GCTGGACCTGGAGGATGGAA+TGG - chr6.3:79976672-79976691 MS.gene61401:intron 60.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 79974770 79977763 79974770 ID=MS.gene61401
chr6.3 mRNA 79974770 79977763 79974770 ID=MS.gene61401.t1;Parent=MS.gene61401
chr6.3 exon 79977603 79977763 79977603 ID=MS.gene61401.t1.exon1;Parent=MS.gene61401.t1
chr6.3 CDS 79977603 79977763 79977603 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79977380 79977438 79977380 ID=MS.gene61401.t1.exon2;Parent=MS.gene61401.t1
chr6.3 CDS 79977380 79977438 79977380 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79977217 79977273 79977217 ID=MS.gene61401.t1.exon3;Parent=MS.gene61401.t1
chr6.3 CDS 79977217 79977273 79977217 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79976960 79976994 79976960 ID=MS.gene61401.t1.exon4;Parent=MS.gene61401.t1
chr6.3 CDS 79976960 79976994 79976960 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79976692 79976795 79976692 ID=MS.gene61401.t1.exon5;Parent=MS.gene61401.t1
chr6.3 CDS 79976692 79976795 79976692 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79976547 79976622 79976547 ID=MS.gene61401.t1.exon6;Parent=MS.gene61401.t1
chr6.3 CDS 79976547 79976622 79976547 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79976377 79976435 79976377 ID=MS.gene61401.t1.exon7;Parent=MS.gene61401.t1
chr6.3 CDS 79976377 79976435 79976377 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79976212 79976277 79976212 ID=MS.gene61401.t1.exon8;Parent=MS.gene61401.t1
chr6.3 CDS 79976212 79976277 79976212 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79976044 79976127 79976044 ID=MS.gene61401.t1.exon9;Parent=MS.gene61401.t1
chr6.3 CDS 79976044 79976127 79976044 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79975840 79975904 79975840 ID=MS.gene61401.t1.exon10;Parent=MS.gene61401.t1
chr6.3 CDS 79975840 79975904 79975840 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79975645 79975727 79975645 ID=MS.gene61401.t1.exon11;Parent=MS.gene61401.t1
chr6.3 CDS 79975645 79975727 79975645 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79975463 79975553 79975463 ID=MS.gene61401.t1.exon12;Parent=MS.gene61401.t1
chr6.3 CDS 79975463 79975553 79975463 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79975327 79975376 79975327 ID=MS.gene61401.t1.exon13;Parent=MS.gene61401.t1
chr6.3 CDS 79975327 79975376 79975327 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79974949 79975089 79974949 ID=MS.gene61401.t1.exon14;Parent=MS.gene61401.t1
chr6.3 CDS 79974949 79975089 79974949 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
chr6.3 exon 79974770 79974862 79974770 ID=MS.gene61401.t1.exon15;Parent=MS.gene61401.t1
chr6.3 CDS 79974770 79974862 79974770 ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1
Gene Sequence

>MS.gene61401

ATGGCTAGATTGATGGTGCTTGCATTTTGTATCCTCGTGTTGCTGAATATTATTGCAAGTGTTCCATCATCTTCAGCTGCTCGATTATTAGGAAACAACAATGTAACCAAAATTAAGAGTTATATGTTGCAAAATGGACTTGGTCAGACACCTCCCATGGGGTATGCTATACCCTCTTTATTTGTCATTCTCATCCATTGTTCATTCAAATTCAAATATATCCATTTTTTCTTTTATGATTCTCACATAAAAATACACATAATTTTCTCCAATTAAATACATGAAAGTATATAGTTTCTTAATCAATTATATTCATGATGTTCAGATGGAATAGTTGGAACCATTTTGGTTGTGATATAAATGAAAGTTTAATCCGAGATACAGGTATATATGTTTATTATCATTATTATGATGTTCCCTAAGCTATTATTTTTATAGTTTAAATATATTTAATTCAATTGAAGTAAACAATATTGATTTATCATTTCAGCTGATGCGATGGTGTCAACTGGACTTGCTGCCCTAGGGTACAAGTATATCAATTTAGGTAGGTGGCAAGTGGCAACTACAACGATCATTGCTGCTACTATACTTACTCTTTATTTTGTTGATGAGTGAATATTTAGTTGATAATTTGTTAAAGTTTCTTGTAGAGAATTTTTTTTAAATATTAATGTATTTTTTTATTATGTGTAAAATATTATATAGACATTTATTTATGTATGAAAATATATTTTAATAATATAAATTTGCATGTTTTTTTTCCCAGATGATTGTTGGGCAGAACTTAATCGAGACTCACAGGTATTTAATATATATCGTCTTTTAAAAAAATTCCATTGATTTGTATGTTTATTTTCTTCATGTACTTTTATGTGTCTATTTAAAAAAAAAATAGGTTAAGTGAATTTAAATTAATAGATTAACATATCATAGTGTTTATAACTCTGACTAGTTAAATATGTTAGGGAAATATGGTTCCCAAGGCTTCAACGTTTCCTTCAGGAATTAAAGCTCTAGCTCATTATATTCATCGGAAAGGCTTGAAGTTGGGAATTTATTCAGATGCCGGGTATGAACATATTAAATTTTATTTGATGATCCTGAATATGATTGTTGATCACTTGCAATTGCTATGCAGAAATCAAACTTGTAGTAAACGTATGCCTGGATCACTAGGACATGAAATACAAGATGCCAAAACATTTGCTTCTTGGGTAAACCATATATACATACATTATTTGAAAATCATTTTTCGCTTTTATCAACATTATATTCTATTTATAATCTTATGTTGTTTACCAATATTGGTTCAAATTTTTCTTTAGGGAGTCGATTATTTGAAGTATGATAATTGTGAAAATAATGGTATAAGTGTTAGAGAAAGGTATTTAATTTATTTTCTTCAAATTCAAATAGTTATATCAACATACTTAATATTTTGTAAAAAATAGTACTTACTAGTTTCATATGTTGTGTAAATCAGGTATCCACCAATGAGTGAAGCCTTATTAAAATCGGGAAGGTCAATCTTCTTCTCTATGTGTGAATGGTGAGTTAGATTGGTGATAATGTTTCTCATACATAATTGATATTTCATTTTCTATTTCATTCTAATTTCTTATTTGAAACATAGGGGATGGGAAGATCCAGCAACATGGGCCAAAAGTGTGGGAAATAGTTGGAGAACAACAGGAGATATTGAAGATAACTGGAATAGGTAAAATTAATATGATAACTCACATTCTCACATTTTACATTGTTTCTTTTTGCGTAATAATTTAGCTTAGGAAAATAAATTTTCAATTCTTTTCTTCATTTTCTTATATTATGACCAACTAACTTTATTCCATCCCTAGCATGACTTCTATAATAGATGTAAATGACAAATGGGCATCTTATGCTGGACCTGGAGGATGGAATGGTAATTAACTAACCTCACTAGTAATTTTATGAATGTTAAATTTAAGATCATTACAAGTACATCAAACTTCAATATTAATTCCTCGTATGTGTCATTAATGTTTGGATATTAGATCCTGATATGCTCGAAGTTGGAAATGGAGGCATGACAACAGAGGAATATCGTGCCCATTTCAGCATTTGGGCATTAGCTAAGGTGCATGAAATAATTTTTATATACCTATTGTTAAGACAAAGTAATATGTCTTGAATTCGTTGTTTTTAACTATTTTACTCGGTTTAAATAGGCCTCTTTATTAGTTGGTTGTAATATTCAAGCAATGGATAATATCACGTATGAATTGATAAGCAACTCTGAAGTTATTGCAGTAAACCAAGGTAAGAAGACTTTCTTGAAAGATAAATGTATTAATTTCTTCAATAAAGAATGCTTTGAAACTTACACGTTTCTTGTGGTATTGCAGATAAACTTGGAGTTCAGGGAAAGAAAGTCAAAAGCAACAATGATTTAGAGGTGACTTTATTATCTTTCCCTTTATATGGTGTTTAAGTTTGATTCCTCACAACTTATAATGATACTAAATTTGTTTAACTTTCAAATCAATACATGGATCTAGAGCAGCCTGTGATATATGCAAACTAATGCAACCTTATAATCAAATCATTTGTGTATTATATACATACATATGCATGTGAAAATTGTATCATAGTTCTTGCATACAACTTCTTACTAAAAATTCTATGGATATAGGTTTGGGCAGGTCCTCTCAATAATAACAAAGTAGCAGTGGTCTTATGGAATAGAAGTTCATCAAATGCAACGGTAACTGCATCCTGGTCAGATATAGGTCTGAAATCAGGAACTATAGTTGATGCAAGAGATTTATGGGAGGTAAGAGAGTTAGGCTCATTTTTCATTGTATTGTGCAAAACAATTTAAATTCATTTGGTTTTGATGGTGTGTAATGATTTTTGCAGCACTCAACACAATCATTGGTTTCTGGAGAAATCTCTGATGAGTTAGATTCACATGCCTGCAAGATGTATGTTCTGACACCTAAAAGGAGTTAA

Protein sequence

>MS.gene61401.t1

MARLMVLAFCILVLLNIIASVPSSSAARLLGNNNVTKIKSYMLQNGLGQTPPMGWNSWNHFGCDINESLIRDTADAMVSTGLAALGYKYINLDDCWAELNRDSQGNMVPKASTFPSGIKALAHYIHRKGLKLGIYSDAGNQTCSKRMPGSLGHEIQDAKTFASWGVDYLKYDNCENNGISVRERYPPMSEALLKSGRSIFFSMCEWGWEDPATWAKSVGNSWRTTGDIEDNWNSMTSIIDVNDKWASYAGPGGWNDPDMLEVGNGGMTTEEYRAHFSIWALAKASLLVGCNIQAMDNITYELISNSEVIAVNQDKLGVQGKKVKSNNDLEVWAGPLNNNKVAVVLWNRSSSNATVTASWSDIGLKSGTIVDARDLWEHSTQSLVSGEISDELDSHACKMYVLTPKRS