Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61401.t1 | KEH27106.1 | 97.3 | 408 | 10 | 1 | 1 | 407 | 1 | 408 | 2.20E-228 | 801.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61401.t1 | P14749 | 80.4 | 368 | 72 | 0 | 38 | 405 | 43 | 410 | 2.9e-176 | 619.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61401.t1 | A0A072UCB8 | 97.3 | 408 | 10 | 1 | 1 | 407 | 1 | 408 | 1.6e-228 | 801.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene05536 | MS.gene61401 | 0.897081 | 1.99E-76 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene61401 | MS.gene87685 | PPI |
MS.gene61401 | MS.gene27501 | PPI |
MS.gene61401 | MS.gene049391 | PPI |
MS.gene87684 | MS.gene61401 | PPI |
MS.gene92763 | MS.gene61401 | PPI |
MS.gene61401 | MS.gene92764 | PPI |
MS.gene61401 | MS.gene036941 | PPI |
MS.gene059347 | MS.gene61401 | PPI |
MS.gene61401 | MS.gene06516 | PPI |
MS.gene61401 | MS.gene013419 | PPI |
MS.gene036942 | MS.gene61401 | PPI |
MS.gene27500 | MS.gene61401 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61401.t1 | MTR_6g086625 | 97.304 | 408 | 10 | 1 | 1 | 407 | 1 | 408 | 0.0 | 818 |
MS.gene61401.t1 | MTR_6g086575 | 93.857 | 407 | 25 | 0 | 1 | 407 | 1 | 407 | 0.0 | 791 |
MS.gene61401.t1 | MTR_1g077480 | 90.580 | 414 | 32 | 1 | 1 | 407 | 1 | 414 | 0.0 | 773 |
MS.gene61401.t1 | MTR_1g077520 | 80.988 | 405 | 73 | 2 | 3 | 404 | 4 | 407 | 0.0 | 692 |
MS.gene61401.t1 | MTR_6g069140 | 77.519 | 387 | 81 | 1 | 24 | 404 | 33 | 419 | 0.0 | 634 |
MS.gene61401.t1 | MTR_1g077520 | 81.325 | 332 | 58 | 2 | 3 | 331 | 4 | 334 | 0.0 | 574 |
MS.gene61401.t1 | MTR_7g073640 | 60.599 | 401 | 153 | 4 | 7 | 404 | 9 | 407 | 5.77e-180 | 507 |
MS.gene61401.t1 | MTR_7g073650 | 62.992 | 381 | 138 | 3 | 27 | 404 | 26 | 406 | 7.24e-180 | 507 |
MS.gene61401.t1 | MTR_3g094160 | 61.995 | 371 | 136 | 3 | 41 | 407 | 59 | 428 | 2.90e-174 | 493 |
MS.gene61401.t1 | MTR_1g078410 | 63.380 | 213 | 19 | 3 | 1 | 206 | 1 | 161 | 2.94e-82 | 250 |
MS.gene61401.t1 | MTR_0279s0030 | 51.220 | 123 | 58 | 2 | 284 | 404 | 101 | 223 | 2.32e-35 | 130 |
MS.gene61401.t1 | MTR_0279s0030 | 51.220 | 123 | 58 | 2 | 284 | 404 | 185 | 307 | 3.24e-34 | 129 |
MS.gene61401.t1 | MTR_0279s0030 | 51.220 | 123 | 58 | 2 | 284 | 404 | 250 | 372 | 8.61e-34 | 130 |
MS.gene61401.t1 | MTR_8g089725 | 25.437 | 515 | 255 | 21 | 7 | 405 | 4 | 505 | 5.58e-25 | 107 |
MS.gene61401.t1 | MTR_8g089735 | 25.243 | 515 | 256 | 21 | 7 | 405 | 4 | 505 | 4.37e-24 | 104 |
MS.gene61401.t1 | MTR_3g086580 | 25.253 | 396 | 196 | 13 | 8 | 312 | 3 | 389 | 1.84e-21 | 97.1 |
MS.gene61401.t1 | MTR_8g089745 | 24.810 | 395 | 200 | 14 | 4 | 313 | 1 | 383 | 8.31e-21 | 94.4 |
MS.gene61401.t1 | MTR_8g089745 | 24.810 | 395 | 200 | 14 | 4 | 313 | 1 | 383 | 1.86e-20 | 94.0 |
MS.gene61401.t1 | MTR_8g089740 | 25.641 | 390 | 192 | 15 | 10 | 313 | 2 | 379 | 4.55e-20 | 92.8 |
MS.gene61401.t1 | MTR_2g096530 | 26.934 | 349 | 165 | 12 | 51 | 312 | 40 | 385 | 4.80e-20 | 92.8 |
MS.gene61401.t1 | MTR_3g094180 | 48.611 | 72 | 34 | 1 | 317 | 385 | 7 | 78 | 1.54e-13 | 66.6 |
MS.gene61401.t1 | MTR_3g086580 | 29.050 | 179 | 98 | 6 | 161 | 312 | 26 | 202 | 7.20e-12 | 67.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61401.t1 | AT5G08370 | 68.069 | 404 | 114 | 2 | 4 | 407 | 8 | 396 | 0.0 | 581 |
MS.gene61401.t1 | AT5G08370 | 72.404 | 366 | 101 | 0 | 42 | 407 | 5 | 370 | 0.0 | 579 |
MS.gene61401.t1 | AT5G08380 | 59.360 | 406 | 160 | 3 | 3 | 404 | 4 | 408 | 0.0 | 511 |
MS.gene61401.t1 | AT3G56310 | 63.760 | 367 | 128 | 4 | 43 | 405 | 65 | 430 | 1.72e-174 | 494 |
MS.gene61401.t1 | AT3G56310 | 59.673 | 367 | 119 | 5 | 43 | 405 | 65 | 406 | 8.81e-156 | 446 |
MS.gene61401.t1 | AT5G08380 | 61.022 | 313 | 120 | 1 | 3 | 313 | 4 | 316 | 2.93e-144 | 413 |
MS.gene61401.t1 | AT3G26380 | 25.501 | 349 | 170 | 12 | 51 | 312 | 42 | 387 | 2.87e-20 | 92.8 |
MS.gene61401.t1 | AT3G26380 | 25.501 | 349 | 170 | 12 | 51 | 312 | 42 | 387 | 5.85e-20 | 92.4 |
Find 103 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCTTCAGCTGCTCGATTATT+AGG | 0.206376 | 6.3:-79977672 | MS.gene61401:CDS |
CAACATATAACTCTTAATTT+TGG | 0.213476 | 6.3:+79977635 | None:intergenic |
TCAACACAATCATTGGTTTC+TGG | 0.218008 | 6.3:-79974837 | MS.gene61401:CDS |
TAGTTGATGCAAGAGATTTA+TGG | 0.246206 | 6.3:-79974952 | MS.gene61401:CDS |
TTAAATATGTTAGGGAAATA+TGG | 0.256152 | 6.3:-79976786 | MS.gene61401:intron |
ATGCCAAAACATTTGCTTCT+TGG | 0.258381 | 6.3:-79976547 | MS.gene61401:CDS |
CCAACTATTTCCCACACTTT+TGG | 0.260055 | 6.3:+79976079 | None:intergenic |
TGGAATAGTTGGAACCATTT+TGG | 0.262795 | 6.3:-79977415 | MS.gene61401:CDS |
ACAAAGTAGCAGTGGTCTTA+TGG | 0.274504 | 6.3:-79975042 | MS.gene61401:CDS |
ATCGTGCCCATTTCAGCATT+TGG | 0.278804 | 6.3:-79975657 | MS.gene61401:CDS |
TGCCAAAACATTTGCTTCTT+GGG | 0.290074 | 6.3:-79976546 | MS.gene61401:intron |
CATTTATATCACAACCAAAA+TGG | 0.295557 | 6.3:+79977401 | None:intergenic |
GGGTACAAGTATATCAATTT+AGG | 0.295779 | 6.3:-79977216 | MS.gene61401:intron |
TTTCCAACTTCGAGCATATC+AGG | 0.305679 | 6.3:+79975703 | None:intergenic |
AAGAGTTATATGTTGCAAAA+TGG | 0.307994 | 6.3:-79977627 | MS.gene61401:CDS |
TGCAGATAAACTTGGAGTTC+AGG | 0.311238 | 6.3:-79975359 | MS.gene61401:intron |
TTTAATAAGGCTTCACTCAT+TGG | 0.327142 | 6.3:+79976248 | None:intergenic |
CAGGAGATATTGAAGATAAC+TGG | 0.351324 | 6.3:-79976049 | MS.gene61401:CDS |
CTAATGCCCAAATGCTGAAA+TGG | 0.353093 | 6.3:+79975650 | None:intergenic |
CAAAAGCAACAATGATTTAG+AGG | 0.357578 | 6.3:-79975326 | MS.gene61401:intron |
AGTTGATGCAAGAGATTTAT+GGG | 0.361924 | 6.3:-79974951 | MS.gene61401:CDS |
TCGTGCCCATTTCAGCATTT+GGG | 0.362441 | 6.3:-79975656 | MS.gene61401:CDS |
TACCCAAGAAGCAAATGTTT+TGG | 0.362595 | 6.3:+79976544 | None:intergenic |
TGTATGTTCTGACACCTAAA+AGG | 0.366627 | 6.3:-79974776 | MS.gene61401:CDS |
TATGATAATTGTGAAAATAA+TGG | 0.367657 | 6.3:-79976395 | MS.gene61401:CDS |
GAGTGAAGCCTTATTAAAAT+CGG | 0.376993 | 6.3:-79976243 | MS.gene61401:CDS |
TAATAGATGTAAATGACAAA+TGG | 0.395220 | 6.3:-79975871 | MS.gene61401:CDS |
GCAGCACTCAACACAATCAT+TGG | 0.401559 | 6.3:-79974844 | MS.gene61401:intron |
TGAAGGAAACGTTGAAGCCT+TGG | 0.402252 | 6.3:+79976760 | None:intergenic |
GCAGATAAACTTGGAGTTCA+GGG | 0.405966 | 6.3:-79975358 | MS.gene61401:intron |
TGATGTTCAGATGGAATAGT+TGG | 0.418115 | 6.3:-79977426 | MS.gene61401:intron |
AAATAGGCCTCTTTATTAGT+TGG | 0.419468 | 6.3:-79975537 | MS.gene61401:intron |
ACTGCATCCTGGTCAGATAT+AGG | 0.424252 | 6.3:-79974992 | MS.gene61401:CDS |
TGTCAGAACATACATCTTGC+AGG | 0.425297 | 6.3:+79974785 | None:intergenic |
GAAAGTTTAATCCGAGATAC+AGG | 0.426792 | 6.3:-79977379 | MS.gene61401:intron |
GCTGATGCGATGGTGTCAAC+TGG | 0.433263 | 6.3:-79977252 | MS.gene61401:CDS |
TCAACTGGACTTGCTGCCCT+AGG | 0.444646 | 6.3:-79977237 | MS.gene61401:CDS |
CATCGGAAAGGCTTGAAGTT+GGG | 0.448224 | 6.3:-79976710 | MS.gene61401:CDS |
TAGAGCAATGGCTAGATTGA+TGG | 0.453710 | 6.3:-79977748 | None:intergenic |
GGAAATAGTTGGAGAACAAC+AGG | 0.462081 | 6.3:-79976068 | MS.gene61401:CDS |
AATAGATGTAAATGACAAAT+GGG | 0.464657 | 6.3:-79975870 | MS.gene61401:CDS |
GATATGCTCGAAGTTGGAAA+TGG | 0.467367 | 6.3:-79975700 | MS.gene61401:CDS |
ATTTCATGTCCTAGTGATCC+AGG | 0.469966 | 6.3:+79976575 | None:intergenic |
TAATGCCCAAATGCTGAAAT+GGG | 0.470549 | 6.3:+79975651 | None:intergenic |
GACAAATGGGCATCTTATGC+TGG | 0.477215 | 6.3:-79975857 | MS.gene61401:CDS |
ATATTGAAGATAACTGGAAT+AGG | 0.480224 | 6.3:-79976043 | MS.gene61401:intron |
TGTGGTATTGCAGATAAACT+TGG | 0.480571 | 6.3:-79975367 | MS.gene61401:intron |
TTGGGAATTTATTCAGATGC+CGG | 0.482913 | 6.3:-79976692 | MS.gene61401:CDS |
CAGCATTTGGGCATTAGCTA+AGG | 0.486215 | 6.3:-79975644 | MS.gene61401:intron |
AATTGATATACTTGTACCCT+AGG | 0.490789 | 6.3:+79977220 | None:intergenic |
TCTTCTTCTCTATGTGTGAA+TGG | 0.495440 | 6.3:-79976211 | MS.gene61401:intron |
AAGGCTTCAACGTTTCCTTC+AGG | 0.495513 | 6.3:-79976758 | MS.gene61401:CDS |
ACTTGTAGTAAACGTATGCC+TGG | 0.499229 | 6.3:-79976593 | MS.gene61401:CDS |
GATCCTGATATGCTCGAAGT+TGG | 0.500070 | 6.3:-79975706 | MS.gene61401:CDS |
TCATCGGAAAGGCTTGAAGT+TGG | 0.502672 | 6.3:-79976711 | MS.gene61401:CDS |
ATTACAACCAACTAATAAAG+AGG | 0.506505 | 6.3:+79975530 | None:intergenic |
AGTGAAGCCTTATTAAAATC+GGG | 0.508984 | 6.3:-79976242 | MS.gene61401:CDS |
GAAGGAAACGTTGAAGCCTT+GGG | 0.511297 | 6.3:+79976761 | None:intergenic |
ATGGTATAAGTGTTAGAGAA+AGG | 0.512588 | 6.3:-79976376 | MS.gene61401:intron |
AATCGAGCAGCTGAAGATGA+TGG | 0.516977 | 6.3:+79977678 | None:intergenic |
TCAGATATAGGTCTGAAATC+AGG | 0.516980 | 6.3:-79974980 | MS.gene61401:CDS |
CTCTAGCTCATTATATTCAT+CGG | 0.518908 | 6.3:-79976727 | MS.gene61401:CDS |
AATAAGGCTTCACTCATTGG+TGG | 0.521866 | 6.3:+79976251 | None:intergenic |
GCTACTTTGTTATTATTGAG+AGG | 0.523143 | 6.3:+79975055 | None:intergenic |
TAATTACCATTCCATCCTCC+AGG | 0.523855 | 6.3:+79975833 | None:intergenic |
CCAAAAGTGTGGGAAATAGT+TGG | 0.526021 | 6.3:-79976079 | MS.gene61401:CDS |
CAACTGGACTTGCTGCCCTA+GGG | 0.527150 | 6.3:-79977236 | MS.gene61401:CDS |
TGGGAATTTATTCAGATGCC+GGG | 0.530152 | 6.3:-79976691 | MS.gene61401:intron |
TATATGTTGCAAAATGGACT+TGG | 0.531723 | 6.3:-79977621 | MS.gene61401:CDS |
AGCAACATGGGCCAAAAGTG+TGG | 0.542837 | 6.3:-79976090 | MS.gene61401:CDS |
CTTATGCTGGACCTGGAGGA+TGG | 0.545149 | 6.3:-79975844 | MS.gene61401:CDS |
CTATGGATATAGGTTTGGGC+AGG | 0.545776 | 6.3:-79975079 | MS.gene61401:intron |
ATGGGAAGATCCAGCAACAT+GGG | 0.549059 | 6.3:-79976102 | MS.gene61401:CDS |
TGGGCATCTTATGCTGGACC+TGG | 0.550800 | 6.3:-79975851 | MS.gene61401:CDS |
ATGCAACGGTAACTGCATCC+TGG | 0.556007 | 6.3:-79975003 | MS.gene61401:CDS |
TGGTTGTAATATTCAAGCAA+TGG | 0.558395 | 6.3:-79975517 | MS.gene61401:CDS |
TTATTTGAAACATAGGGGAT+GGG | 0.561757 | 6.3:-79976120 | MS.gene61401:intron |
AAACGTATGCCTGGATCACT+AGG | 0.565228 | 6.3:-79976584 | MS.gene61401:CDS |
AAACATATATACCTGTATCT+CGG | 0.565473 | 6.3:+79977368 | None:intergenic |
TATCATTTCAGCTGATGCGA+TGG | 0.569529 | 6.3:-79977262 | MS.gene61401:intron |
GATGGGAAGATCCAGCAACA+TGG | 0.570848 | 6.3:-79976103 | MS.gene61401:CDS |
TTAGGGAAATATGGTTCCCA+AGG | 0.571959 | 6.3:-79976777 | MS.gene61401:intron |
AGAACTTAATCGAGACTCAC+AGG | 0.572244 | 6.3:-79976959 | MS.gene61401:intron |
GCTAGAGCTTTAATTCCTGA+AGG | 0.574804 | 6.3:+79976743 | None:intergenic |
ACTTGGTCAGACACCTCCCA+TGG | 0.576039 | 6.3:-79977604 | MS.gene61401:CDS |
GCTCATTATATTCATCGGAA+AGG | 0.586081 | 6.3:-79976722 | MS.gene61401:CDS |
CTTGGTCAGACACCTCCCAT+GGG | 0.589037 | 6.3:-79977603 | MS.gene61401:CDS |
GCTGGACCTGGAGGATGGAA+TGG | 0.600529 | 6.3:-79975839 | MS.gene61401:intron |
ATGCTCGAAGTTGGAAATGG+AGG | 0.603679 | 6.3:-79975697 | MS.gene61401:CDS |
CAATAATAACAAAGTAGCAG+TGG | 0.606485 | 6.3:-79975050 | MS.gene61401:CDS |
GCAACATGGGCCAAAAGTGT+GGG | 0.608316 | 6.3:-79976089 | MS.gene61401:CDS |
TAGAAGTTCATCAAATGCAA+CGG | 0.621482 | 6.3:-79975017 | MS.gene61401:CDS |
TTTCAGACCTATATCTGACC+AGG | 0.624392 | 6.3:+79974985 | None:intergenic |
GAAGTTATTGCAGTAAACCA+AGG | 0.635887 | 6.3:-79975462 | MS.gene61401:intron |
AAGCCTTATTAAAATCGGGA+AGG | 0.639835 | 6.3:-79976238 | MS.gene61401:CDS |
ATTGATATACTTGTACCCTA+GGG | 0.641607 | 6.3:+79977221 | None:intergenic |
GCATCTTATGCTGGACCTGG+AGG | 0.645529 | 6.3:-79975848 | MS.gene61401:CDS |
GAGGGTATAGCATACCCCAT+GGG | 0.653031 | 6.3:+79977588 | None:intergenic |
CAATAATATTCAGCAACACG+AGG | 0.675415 | 6.3:+79977709 | None:intergenic |
AAATGGAGGCATGACAACAG+AGG | 0.691145 | 6.3:-79975683 | MS.gene61401:CDS |
GGTATAGCATACCCCATGGG+AGG | 0.697835 | 6.3:+79977591 | None:intergenic |
TGATGCAAGAGATTTATGGG+AGG | 0.716729 | 6.3:-79974948 | MS.gene61401:intron |
TTGGTCAGACACCTCCCATG+GGG | 0.730500 | 6.3:-79977602 | MS.gene61401:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGTCTATTTAAAAAAAAAAT+AGG | - | chr6.3:79975646-79975665 | MS.gene61401:CDS | 10.0% |
!! | AAAATAAACATACAAATCAA+TGG | + | chr6.3:79975609-79975628 | None:intergenic | 15.0% |
!! | AACTATAAAAATAATAGCTT+AGG | + | chr6.3:79975190-79975209 | None:intergenic | 15.0% |
!! | ACTATAAAAATAATAGCTTA+GGG | + | chr6.3:79975189-79975208 | None:intergenic | 15.0% |
!! | CAAAACAATTTAAATTCATT+TGG | - | chr6.3:79977620-79977639 | MS.gene61401:CDS | 15.0% |
!! | TATACTTTCATGTATTTAAT+TGG | + | chr6.3:79975041-79975060 | None:intergenic | 15.0% |
!! | TATGATAATTGTGAAAATAA+TGG | - | chr6.3:79976116-79976135 | MS.gene61401:intron | 15.0% |
!! | TCAAATAATGTATGTATATA+TGG | + | chr6.3:79975995-79976014 | None:intergenic | 15.0% |
!!! | AATTTCTTATTTGAAACATA+GGG | - | chr6.3:79976385-79976404 | MS.gene61401:CDS | 15.0% |
!!! | TAATTTCTTATTTGAAACAT+AGG | - | chr6.3:79976384-79976403 | MS.gene61401:CDS | 15.0% |
!!! | TTGTTTTTAACTATTTTACT+CGG | - | chr6.3:79976948-79976967 | MS.gene61401:intron | 15.0% |
!! | AAACTTAAACACCATATAAA+GGG | + | chr6.3:79977227-79977246 | None:intergenic | 20.0% |
!! | AAATTTAATATGTTCATACC+CGG | + | chr6.3:79975841-79975860 | None:intergenic | 20.0% |
!! | AATAGATGTAAATGACAAAT+GGG | - | chr6.3:79976641-79976660 | MS.gene61401:intron | 20.0% |
!! | ACACAAATGATTTGATTATA+AGG | + | chr6.3:79977344-79977363 | None:intergenic | 20.0% |
!! | ACTAAAAATTCTATGGATAT+AGG | - | chr6.3:79977422-79977441 | MS.gene61401:intron | 20.0% |
!! | ACTTCTTACTAAAAATTCTA+TGG | - | chr6.3:79977415-79977434 | MS.gene61401:CDS | 20.0% |
!! | AGAAAAATTTGAACCAATAT+TGG | + | chr6.3:79976074-79976093 | None:intergenic | 20.0% |
!! | ATTTGAATTTGAATGAACAA+TGG | + | chr6.3:79974967-79974986 | None:intergenic | 20.0% |
!! | GAGAATCATAAAAGAAAAAA+TGG | + | chr6.3:79974994-79975013 | None:intergenic | 20.0% |
!! | TAATAGATGTAAATGACAAA+TGG | - | chr6.3:79976640-79976659 | MS.gene61401:intron | 20.0% |
!! | TATTACTTTGTCTTAACAAT+AGG | + | chr6.3:79976915-79976934 | None:intergenic | 20.0% |
!! | TTAAATATGTTAGGGAAATA+TGG | - | chr6.3:79975725-79975744 | MS.gene61401:intron | 20.0% |
!! | TTAACTTTCAAATCAATACA+TGG | - | chr6.3:79977281-79977300 | MS.gene61401:intron | 20.0% |
!! | TTATTATCTTTCCCTTTATA+TGG | - | chr6.3:79977213-79977232 | MS.gene61401:intron | 20.0% |
!!! | ATTGGTTCAAATTTTTCTTT+AGG | - | chr6.3:79976076-79976095 | MS.gene61401:CDS | 20.0% |
!!! | ATTTCTTATTTGAAACATAG+GGG | - | chr6.3:79976386-79976405 | MS.gene61401:CDS | 20.0% |
!!! | CAACATATAACTCTTAATTT+TGG | + | chr6.3:79974879-79974898 | None:intergenic | 20.0% |
!!! | TTAAATTCATTTGGTTTTGA+TGG | - | chr6.3:79977629-79977648 | MS.gene61401:CDS | 20.0% |
!!! | TTGGTTCAAATTTTTCTTTA+GGG | - | chr6.3:79976077-79976096 | MS.gene61401:CDS | 20.0% |
! | AAACATATATACCTGTATCT+CGG | + | chr6.3:79975146-79975165 | None:intergenic | 25.0% |
! | AAATTCTATGGATATAGGTT+TGG | - | chr6.3:79977427-79977446 | MS.gene61401:intron | 25.0% |
! | AAGAGTTATATGTTGCAAAA+TGG | - | chr6.3:79974884-79974903 | MS.gene61401:intron | 25.0% |
! | AATTCTATGGATATAGGTTT+GGG | - | chr6.3:79977428-79977447 | MS.gene61401:intron | 25.0% |
! | ACAAGTATATCAATTTAGGT+AGG | - | chr6.3:79975299-79975318 | MS.gene61401:intron | 25.0% |
! | ATATTGAAGATAACTGGAAT+AGG | - | chr6.3:79976468-79976487 | MS.gene61401:intron | 25.0% |
! | ATGAGAATGACAAATAAAGA+GGG | + | chr6.3:79974944-79974963 | None:intergenic | 25.0% |
! | ATTACAACCAACTAATAAAG+AGG | + | chr6.3:79976984-79977003 | None:intergenic | 25.0% |
! | CAAACTTAAACACCATATAA+AGG | + | chr6.3:79977228-79977247 | None:intergenic | 25.0% |
! | CATTCATAAAATTACTAGTG+AGG | + | chr6.3:79976709-79976728 | None:intergenic | 25.0% |
! | CATTTATATCACAACCAAAA+TGG | + | chr6.3:79975113-79975132 | None:intergenic | 25.0% |
! | TAGTATCATTATAAGTTGTG+AGG | + | chr6.3:79977254-79977273 | None:intergenic | 25.0% |
! | TTATATTCATGATGTTCAGA+TGG | - | chr6.3:79975076-79975095 | MS.gene61401:intron | 25.0% |
! | TTTCATATGTTGTGTAAATC+AGG | - | chr6.3:79976234-79976253 | MS.gene61401:CDS | 25.0% |
!! | CTATTTTACTCGGTTTAAAT+AGG | - | chr6.3:79976958-79976977 | MS.gene61401:intron | 25.0% |
!! | CTGACTAGTTAAATATGTTA+GGG | - | chr6.3:79975717-79975736 | MS.gene61401:intron | 25.0% |
!! | CTTATGTTGTTTACCAATAT+TGG | - | chr6.3:79976058-79976077 | MS.gene61401:CDS | 25.0% |
!! | TCTGACTAGTTAAATATGTT+AGG | - | chr6.3:79975716-79975735 | MS.gene61401:intron | 25.0% |
!! | TTTGCGTAATAATTTAGCTT+AGG | - | chr6.3:79976538-79976557 | MS.gene61401:intron | 25.0% |
AAACATTAATGACACATACG+AGG | + | chr6.3:79976777-79976796 | None:intergenic | 30.0% | |
AAATAGGCCTCTTTATTAGT+TGG | - | chr6.3:79976974-79976993 | MS.gene61401:CDS | 30.0% | |
AATTGATATACTTGTACCCT+AGG | + | chr6.3:79975294-79975313 | None:intergenic | 30.0% | |
AGTATATCAATTTAGGTAGG+TGG | - | chr6.3:79975302-79975321 | MS.gene61401:intron | 30.0% | |
AGTGATCAACAATCATATTC+AGG | + | chr6.3:79975875-79975894 | None:intergenic | 30.0% | |
ATGGTATAAGTGTTAGAGAA+AGG | - | chr6.3:79976135-79976154 | MS.gene61401:intron | 30.0% | |
ATTGATATACTTGTACCCTA+GGG | + | chr6.3:79975293-79975312 | None:intergenic | 30.0% | |
CAAAAGCAACAATGATTTAG+AGG | - | chr6.3:79977185-79977204 | MS.gene61401:intron | 30.0% | |
CAATAATAACAAAGTAGCAG+TGG | - | chr6.3:79977461-79977480 | MS.gene61401:intron | 30.0% | |
CTATTATAGAAGTCATGCTA+GGG | + | chr6.3:79976626-79976645 | None:intergenic | 30.0% | |
GATGAGAATGACAAATAAAG+AGG | + | chr6.3:79974945-79974964 | None:intergenic | 30.0% | |
GGGTACAAGTATATCAATTT+AGG | - | chr6.3:79975295-79975314 | MS.gene61401:intron | 30.0% | |
TAGAAGTTCATCAAATGCAA+CGG | - | chr6.3:79977494-79977513 | MS.gene61401:intron | 30.0% | |
TCTATTATAGAAGTCATGCT+AGG | + | chr6.3:79976627-79976646 | None:intergenic | 30.0% | |
TGGTTGTAATATTCAAGCAA+TGG | - | chr6.3:79976994-79977013 | MS.gene61401:intron | 30.0% | |
TTTAATAAGGCTTCACTCAT+TGG | + | chr6.3:79976266-79976285 | None:intergenic | 30.0% | |
! | AGTTGATGCAAGAGATTTAT+GGG | - | chr6.3:79977560-79977579 | MS.gene61401:intron | 30.0% |
! | CTCTAGCTCATTATATTCAT+CGG | - | chr6.3:79975784-79975803 | MS.gene61401:intron | 30.0% |
! | TAGTTGATGCAAGAGATTTA+TGG | - | chr6.3:79977559-79977578 | MS.gene61401:intron | 30.0% |
! | TATATGTTGCAAAATGGACT+TGG | - | chr6.3:79974890-79974909 | MS.gene61401:intron | 30.0% |
! | TCGTATGTGTCATTAATGTT+TGG | - | chr6.3:79976776-79976795 | MS.gene61401:CDS | 30.0% |
! | TTATTTGAAACATAGGGGAT+GGG | - | chr6.3:79976391-79976410 | MS.gene61401:CDS | 30.0% |
!! | AGTGAAGCCTTATTAAAATC+GGG | - | chr6.3:79976269-79976288 | MS.gene61401:intron | 30.0% |
!! | CATTAGTTTGCATATATCAC+AGG | + | chr6.3:79977318-79977337 | None:intergenic | 30.0% |
!! | GAGTGAAGCCTTATTAAAAT+CGG | - | chr6.3:79976268-79976287 | MS.gene61401:intron | 30.0% |
!! | GCTACTTTGTTATTATTGAG+AGG | + | chr6.3:79977459-79977478 | None:intergenic | 30.0% |
!!! | TTTTTTCCCAGATGATTGTT+GGG | - | chr6.3:79975528-79975547 | MS.gene61401:CDS | 30.0% |
!!! | TTTTTTTCCCAGATGATTGT+TGG | - | chr6.3:79975527-79975546 | MS.gene61401:CDS | 30.0% |
AGGGATGGAATAAAGTTAGT+TGG | + | chr6.3:79976607-79976626 | None:intergenic | 35.0% | |
ATGCCAAAACATTTGCTTCT+TGG | - | chr6.3:79975964-79975983 | MS.gene61401:intron | 35.0% | |
CAATAATATTCAGCAACACG+AGG | + | chr6.3:79974805-79974824 | None:intergenic | 35.0% | |
CAGGAGATATTGAAGATAAC+TGG | - | chr6.3:79976462-79976481 | MS.gene61401:intron | 35.0% | |
GAAAGTTTAATCCGAGATAC+AGG | - | chr6.3:79975132-79975151 | MS.gene61401:intron | 35.0% | |
GAAGTTATTGCAGTAAACCA+AGG | - | chr6.3:79977049-79977068 | MS.gene61401:intron | 35.0% | |
GCTCATTATATTCATCGGAA+AGG | - | chr6.3:79975789-79975808 | MS.gene61401:intron | 35.0% | |
TAATGCCCAAATGCTGAAAT+GGG | + | chr6.3:79976863-79976882 | None:intergenic | 35.0% | |
TCAAGAAAGTCTTCTTACCT+TGG | + | chr6.3:79977069-79977088 | None:intergenic | 35.0% | |
TCTTCTTCTCTATGTGTGAA+TGG | - | chr6.3:79976300-79976319 | MS.gene61401:intron | 35.0% | |
TGAAACTTACACGTTTCTTG+TGG | - | chr6.3:79977126-79977145 | MS.gene61401:intron | 35.0% | |
TGATGTTCAGATGGAATAGT+TGG | - | chr6.3:79975085-79975104 | MS.gene61401:intron | 35.0% | |
TGCCAAAACATTTGCTTCTT+GGG | - | chr6.3:79975965-79975984 | MS.gene61401:intron | 35.0% | |
TGTATGTTCTGACACCTAAA+AGG | - | chr6.3:79977735-79977754 | MS.gene61401:CDS | 35.0% | |
TGTGGTATTGCAGATAAACT+TGG | - | chr6.3:79977144-79977163 | MS.gene61401:intron | 35.0% | |
TTGGGAATTTATTCAGATGC+CGG | - | chr6.3:79975819-79975838 | MS.gene61401:intron | 35.0% | |
! | CTTATTTGAAACATAGGGGA+TGG | - | chr6.3:79976390-79976409 | MS.gene61401:CDS | 35.0% |
! | TACCCAAGAAGCAAATGTTT+TGG | + | chr6.3:79975970-79975989 | None:intergenic | 35.0% |
! | TCAGATATAGGTCTGAAATC+AGG | - | chr6.3:79977531-79977550 | MS.gene61401:intron | 35.0% |
! | TGGAATAGTTGGAACCATTT+TGG | - | chr6.3:79975096-79975115 | MS.gene61401:intron | 35.0% |
!! | AAGCCTTATTAAAATCGGGA+AGG | - | chr6.3:79976273-79976292 | MS.gene61401:intron | 35.0% |
!! | TCAACACAATCATTGGTTTC+TGG | - | chr6.3:79977674-79977693 | MS.gene61401:CDS | 35.0% |
!! | TGACCTTCCCGATTTTAATA+AGG | + | chr6.3:79976279-79976298 | None:intergenic | 35.0% |
AATAAGGCTTCACTCATTGG+TGG | + | chr6.3:79976263-79976282 | None:intergenic | 40.0% | |
ACTTGTAGTAAACGTATGCC+TGG | - | chr6.3:79975918-79975937 | MS.gene61401:intron | 40.0% | |
AGAACTTAATCGAGACTCAC+AGG | - | chr6.3:79975552-79975571 | MS.gene61401:intron | 40.0% | |
ATTTCATGTCCTAGTGATCC+AGG | + | chr6.3:79975939-79975958 | None:intergenic | 40.0% | |
CTAATGCCCAAATGCTGAAA+TGG | + | chr6.3:79976864-79976883 | None:intergenic | 40.0% | |
GATATGCTCGAAGTTGGAAA+TGG | - | chr6.3:79976811-79976830 | MS.gene61401:intron | 40.0% | |
GCAGATAAACTTGGAGTTCA+GGG | - | chr6.3:79977153-79977172 | MS.gene61401:intron | 40.0% | |
GGAAATAGTTGGAGAACAAC+AGG | - | chr6.3:79976443-79976462 | MS.gene61401:intron | 40.0% | |
GTGTGAATGGTGAGTTAGAT+TGG | - | chr6.3:79976313-79976332 | MS.gene61401:intron | 40.0% | |
TAATTACCATTCCATCCTCC+AGG | + | chr6.3:79976681-79976700 | None:intergenic | 40.0% | |
TATAGAAGTCATGCTAGGGA+TGG | + | chr6.3:79976622-79976641 | None:intergenic | 40.0% | |
TATCATTTCAGCTGATGCGA+TGG | - | chr6.3:79975249-79975268 | MS.gene61401:intron | 40.0% | |
TCTTCAGCTGCTCGATTATT+AGG | - | chr6.3:79974839-79974858 | MS.gene61401:CDS | 40.0% | |
TGATGCAAGAGATTTATGGG+AGG | - | chr6.3:79977563-79977582 | MS.gene61401:intron | 40.0% | |
TGCAGATAAACTTGGAGTTC+AGG | - | chr6.3:79977152-79977171 | MS.gene61401:intron | 40.0% | |
TGGGAATTTATTCAGATGCC+GGG | - | chr6.3:79975820-79975839 | MS.gene61401:intron | 40.0% | |
TGTCAGAACATACATCTTGC+AGG | + | chr6.3:79977729-79977748 | None:intergenic | 40.0% | |
TTAGGGAAATATGGTTCCCA+AGG | - | chr6.3:79975734-79975753 | MS.gene61401:intron | 40.0% | |
TTATGGGAGGTAAGAGAGTT+AGG | - | chr6.3:79977576-79977595 | MS.gene61401:intron | 40.0% | |
TTTCAGACCTATATCTGACC+AGG | + | chr6.3:79977529-79977548 | None:intergenic | 40.0% | |
TTTCCAACTTCGAGCATATC+AGG | + | chr6.3:79976811-79976830 | None:intergenic | 40.0% | |
! | ACAAAGTAGCAGTGGTCTTA+TGG | - | chr6.3:79977469-79977488 | MS.gene61401:intron | 40.0% |
! | CCAAAAGTGTGGGAAATAGT+TGG | - | chr6.3:79976432-79976451 | MS.gene61401:intron | 40.0% |
! | CCAACTATTTCCCACACTTT+TGG | + | chr6.3:79976435-79976454 | None:intergenic | 40.0% |
! | GCTAGAGCTTTAATTCCTGA+AGG | + | chr6.3:79975771-79975790 | None:intergenic | 40.0% |
AAACGTATGCCTGGATCACT+AGG | - | chr6.3:79975927-79975946 | MS.gene61401:intron | 45.0% | |
AAGGCTTCAACGTTTCCTTC+AGG | - | chr6.3:79975753-79975772 | MS.gene61401:intron | 45.0% | |
AATCGAGCAGCTGAAGATGA+TGG | + | chr6.3:79974836-79974855 | None:intergenic | 45.0% | |
ACTGCATCCTGGTCAGATAT+AGG | - | chr6.3:79977519-79977538 | MS.gene61401:intron | 45.0% | |
AGTTCTGCCCAACAATCATC+TGG | + | chr6.3:79975538-79975557 | None:intergenic | 45.0% | |
ATCGTGCCCATTTCAGCATT+TGG | - | chr6.3:79976854-79976873 | MS.gene61401:intron | 45.0% | |
ATGCTCGAAGTTGGAAATGG+AGG | - | chr6.3:79976814-79976833 | MS.gene61401:intron | 45.0% | |
ATGGGAAGATCCAGCAACAT+GGG | - | chr6.3:79976409-79976428 | MS.gene61401:CDS | 45.0% | |
CAATTTAGGTAGGTGGCAAG+TGG | - | chr6.3:79975309-79975328 | MS.gene61401:intron | 45.0% | |
CAGCATTTGGGCATTAGCTA+AGG | - | chr6.3:79976867-79976886 | MS.gene61401:intron | 45.0% | |
CATCGGAAAGGCTTGAAGTT+GGG | - | chr6.3:79975801-79975820 | MS.gene61401:intron | 45.0% | |
CTATGGATATAGGTTTGGGC+AGG | - | chr6.3:79977432-79977451 | MS.gene61401:intron | 45.0% | |
GAAGGAAACGTTGAAGCCTT+GGG | + | chr6.3:79975753-79975772 | None:intergenic | 45.0% | |
GACAAATGGGCATCTTATGC+TGG | - | chr6.3:79976654-79976673 | MS.gene61401:intron | 45.0% | |
GATCCTGATATGCTCGAAGT+TGG | - | chr6.3:79976805-79976824 | MS.gene61401:intron | 45.0% | |
GCAGCACTCAACACAATCAT+TGG | - | chr6.3:79977667-79977686 | MS.gene61401:CDS | 45.0% | |
GTTCTGCCCAACAATCATCT+GGG | + | chr6.3:79975537-79975556 | None:intergenic | 45.0% | |
TCATCGGAAAGGCTTGAAGT+TGG | - | chr6.3:79975800-79975819 | MS.gene61401:intron | 45.0% | |
TCGTGCCCATTTCAGCATTT+GGG | - | chr6.3:79976855-79976874 | MS.gene61401:intron | 45.0% | |
TGAAGGAAACGTTGAAGCCT+TGG | + | chr6.3:79975754-79975773 | None:intergenic | 45.0% | |
! | AAATGGAGGCATGACAACAG+AGG | - | chr6.3:79976828-79976847 | MS.gene61401:intron | 45.0% |
AGCAACATGGGCCAAAAGTG+TGG | - | chr6.3:79976421-79976440 | MS.gene61401:intron | 50.0% | |
ATGCAACGGTAACTGCATCC+TGG | - | chr6.3:79977508-79977527 | MS.gene61401:intron | 50.0% | |
GATGGGAAGATCCAGCAACA+TGG | - | chr6.3:79976408-79976427 | MS.gene61401:CDS | 50.0% | |
! | ACACTTTTGGCCCATGTTGC+TGG | + | chr6.3:79976422-79976441 | None:intergenic | 50.0% |
! | AGAGGGTATAGCATACCCCA+TGG | + | chr6.3:79974927-79974946 | None:intergenic | 50.0% |
! | GAGGGTATAGCATACCCCAT+GGG | + | chr6.3:79974926-79974945 | None:intergenic | 50.0% |
! | GCAACATGGGCCAAAAGTGT+GGG | - | chr6.3:79976422-79976441 | MS.gene61401:intron | 50.0% |
ACTTGGTCAGACACCTCCCA+TGG | - | chr6.3:79974907-79974926 | MS.gene61401:intron | 55.0% | |
CTTATGCTGGACCTGGAGGA+TGG | - | chr6.3:79976667-79976686 | MS.gene61401:intron | 55.0% | |
CTTGGTCAGACACCTCCCAT+GGG | - | chr6.3:79974908-79974927 | MS.gene61401:intron | 55.0% | |
GCATCTTATGCTGGACCTGG+AGG | - | chr6.3:79976663-79976682 | MS.gene61401:intron | 55.0% | |
GGTATAGCATACCCCATGGG+AGG | + | chr6.3:79974923-79974942 | None:intergenic | 55.0% | |
TGGGCATCTTATGCTGGACC+TGG | - | chr6.3:79976660-79976679 | MS.gene61401:intron | 55.0% | |
TTGGTCAGACACCTCCCATG+GGG | - | chr6.3:79974909-79974928 | MS.gene61401:intron | 55.0% | |
! | GCTGATGCGATGGTGTCAAC+TGG | - | chr6.3:79975259-79975278 | MS.gene61401:intron | 55.0% |
!! | CAACTGGACTTGCTGCCCTA+GGG | - | chr6.3:79975275-79975294 | MS.gene61401:intron | 55.0% |
!! | TCAACTGGACTTGCTGCCCT+AGG | - | chr6.3:79975274-79975293 | MS.gene61401:intron | 55.0% |
GCTGGACCTGGAGGATGGAA+TGG | - | chr6.3:79976672-79976691 | MS.gene61401:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.3 | gene | 79974770 | 79977763 | 79974770 | ID=MS.gene61401 |
chr6.3 | mRNA | 79974770 | 79977763 | 79974770 | ID=MS.gene61401.t1;Parent=MS.gene61401 |
chr6.3 | exon | 79977603 | 79977763 | 79977603 | ID=MS.gene61401.t1.exon1;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79977603 | 79977763 | 79977603 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79977380 | 79977438 | 79977380 | ID=MS.gene61401.t1.exon2;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79977380 | 79977438 | 79977380 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79977217 | 79977273 | 79977217 | ID=MS.gene61401.t1.exon3;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79977217 | 79977273 | 79977217 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79976960 | 79976994 | 79976960 | ID=MS.gene61401.t1.exon4;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79976960 | 79976994 | 79976960 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79976692 | 79976795 | 79976692 | ID=MS.gene61401.t1.exon5;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79976692 | 79976795 | 79976692 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79976547 | 79976622 | 79976547 | ID=MS.gene61401.t1.exon6;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79976547 | 79976622 | 79976547 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79976377 | 79976435 | 79976377 | ID=MS.gene61401.t1.exon7;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79976377 | 79976435 | 79976377 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79976212 | 79976277 | 79976212 | ID=MS.gene61401.t1.exon8;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79976212 | 79976277 | 79976212 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79976044 | 79976127 | 79976044 | ID=MS.gene61401.t1.exon9;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79976044 | 79976127 | 79976044 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79975840 | 79975904 | 79975840 | ID=MS.gene61401.t1.exon10;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79975840 | 79975904 | 79975840 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79975645 | 79975727 | 79975645 | ID=MS.gene61401.t1.exon11;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79975645 | 79975727 | 79975645 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79975463 | 79975553 | 79975463 | ID=MS.gene61401.t1.exon12;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79975463 | 79975553 | 79975463 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79975327 | 79975376 | 79975327 | ID=MS.gene61401.t1.exon13;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79975327 | 79975376 | 79975327 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79974949 | 79975089 | 79974949 | ID=MS.gene61401.t1.exon14;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79974949 | 79975089 | 79974949 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
chr6.3 | exon | 79974770 | 79974862 | 79974770 | ID=MS.gene61401.t1.exon15;Parent=MS.gene61401.t1 |
chr6.3 | CDS | 79974770 | 79974862 | 79974770 | ID=cds.MS.gene61401.t1;Parent=MS.gene61401.t1 |
Gene Sequence |
Protein sequence |