Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36105.t1 | XP_013445321.1 | 94 | 268 | 10 | 2 | 1 | 262 | 1 | 268 | 2.10E-139 | 505 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36105.t1 | Q32KT5 | 28.0 | 161 | 102 | 5 | 75 | 221 | 147 | 307 | 3.1e-06 | 53.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36105.t1 | A0A072TPP7 | 94.0 | 268 | 10 | 2 | 1 | 262 | 1 | 268 | 1.5e-139 | 505.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049170 | MS.gene36105 | 0.834504 | 2.88E-56 | -1.69E-46 |
| MS.gene049356 | MS.gene36105 | 0.838475 | 2.81E-57 | -1.69E-46 |
| MS.gene049369 | MS.gene36105 | 0.813894 | 2.03E-51 | -1.69E-46 |
| MS.gene049396 | MS.gene36105 | 0.819133 | 1.36E-52 | -1.69E-46 |
| MS.gene050060 | MS.gene36105 | 0.8202 | 7.78E-53 | -1.69E-46 |
| MS.gene050133 | MS.gene36105 | -0.810402 | 1.17E-50 | -1.69E-46 |
| MS.gene050400 | MS.gene36105 | 0.82224 | 2.63E-53 | -1.69E-46 |
| MS.gene050426 | MS.gene36105 | -0.850572 | 1.56E-60 | -1.69E-46 |
| MS.gene050670 | MS.gene36105 | 0.88288 | 7.19E-71 | -1.69E-46 |
| MS.gene05081 | MS.gene36105 | 0.802965 | 4.37E-49 | -1.69E-46 |
| MS.gene050971 | MS.gene36105 | 0.839512 | 1.52E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene36105 | 0.821183 | 4.62E-53 | -1.69E-46 |
| MS.gene051387 | MS.gene36105 | 0.803971 | 2.70E-49 | -1.69E-46 |
| MS.gene051521 | MS.gene36105 | 0.844991 | 5.37E-59 | -1.69E-46 |
| MS.gene051525 | MS.gene36105 | 0.863011 | 3.37E-64 | -1.69E-46 |
| MS.gene051588 | MS.gene36105 | 0.805547 | 1.27E-49 | -1.69E-46 |
| MS.gene051838 | MS.gene36105 | 0.835564 | 1.56E-56 | -1.69E-46 |
| MS.gene052011 | MS.gene36105 | -0.813843 | 2.08E-51 | -1.69E-46 |
| MS.gene052077 | MS.gene36105 | 0.84291 | 1.94E-58 | -1.69E-46 |
| MS.gene052128 | MS.gene36105 | -0.809108 | 2.23E-50 | -1.69E-46 |
| MS.gene052134 | MS.gene36105 | 0.816798 | 4.59E-52 | -1.69E-46 |
| MS.gene052135 | MS.gene36105 | 0.818252 | 2.16E-52 | -1.69E-46 |
| MS.gene052136 | MS.gene36105 | 0.808461 | 3.06E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene36105 | 0.848184 | 7.20E-60 | -1.69E-46 |
| MS.gene052253 | MS.gene36105 | 0.820603 | 6.29E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene36105 | 0.816444 | 5.51E-52 | -1.69E-46 |
| MS.gene052346 | MS.gene36105 | 0.81479 | 1.29E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene36105 | 0.889112 | 3.24E-73 | -1.69E-46 |
| MS.gene052421 | MS.gene36105 | 0.821207 | 4.56E-53 | -1.69E-46 |
| MS.gene052469 | MS.gene36105 | 0.807612 | 4.64E-50 | -1.69E-46 |
| MS.gene052501 | MS.gene36105 | 0.80608 | 9.79E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene36105 | 0.809225 | 2.10E-50 | -1.69E-46 |
| MS.gene053169 | MS.gene36105 | 0.838178 | 3.36E-57 | -1.69E-46 |
| MS.gene05316 | MS.gene36105 | 0.808308 | 3.30E-50 | -1.69E-46 |
| MS.gene053449 | MS.gene36105 | 0.844259 | 8.45E-59 | -1.69E-46 |
| MS.gene053758 | MS.gene36105 | 0.805254 | 1.46E-49 | -1.69E-46 |
| MS.gene053912 | MS.gene36105 | 0.830576 | 2.72E-55 | -1.69E-46 |
| MS.gene054183 | MS.gene36105 | 0.805257 | 1.46E-49 | -1.69E-46 |
| MS.gene054349 | MS.gene36105 | 0.843098 | 1.73E-58 | -1.69E-46 |
| MS.gene054556 | MS.gene36105 | 0.853363 | 2.51E-61 | -1.69E-46 |
| MS.gene05494 | MS.gene36105 | 0.800718 | 1.26E-48 | -1.69E-46 |
| MS.gene055116 | MS.gene36105 | 0.813784 | 2.15E-51 | -1.69E-46 |
| MS.gene055224 | MS.gene36105 | 0.804472 | 2.13E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene36105 | 0.836023 | 1.19E-56 | -1.69E-46 |
| MS.gene055539 | MS.gene36105 | 0.865974 | 4.00E-65 | -1.69E-46 |
| MS.gene05553 | MS.gene36105 | 0.847343 | 1.23E-59 | -1.69E-46 |
| MS.gene05556 | MS.gene36105 | 0.834488 | 2.91E-56 | -1.69E-46 |
| MS.gene05569 | MS.gene36105 | 0.805461 | 1.32E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene36105 | 0.865111 | 7.48E-65 | -1.69E-46 |
| MS.gene055744 | MS.gene36105 | 0.873641 | 1.26E-67 | -1.69E-46 |
| MS.gene055909 | MS.gene36105 | 0.832446 | 9.41E-56 | -1.69E-46 |
| MS.gene055911 | MS.gene36105 | 0.837668 | 4.54E-57 | -1.69E-46 |
| MS.gene056166 | MS.gene36105 | 0.800447 | 1.43E-48 | -1.69E-46 |
| MS.gene056233 | MS.gene36105 | 0.807056 | 6.09E-50 | -1.69E-46 |
| MS.gene056511 | MS.gene36105 | 0.861295 | 1.13E-63 | -1.69E-46 |
| MS.gene056514 | MS.gene36105 | 0.845334 | 4.33E-59 | -1.69E-46 |
| MS.gene056876 | MS.gene36105 | 0.833352 | 5.60E-56 | -1.69E-46 |
| MS.gene057019 | MS.gene36105 | 0.813195 | 2.89E-51 | -1.69E-46 |
| MS.gene057124 | MS.gene36105 | 0.836113 | 1.13E-56 | -1.69E-46 |
| MS.gene057356 | MS.gene36105 | -0.807888 | 4.06E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene36105 | 0.844162 | 8.97E-59 | -1.69E-46 |
| MS.gene057609 | MS.gene36105 | 0.823719 | 1.19E-53 | -1.69E-46 |
| MS.gene057610 | MS.gene36105 | 0.818352 | 2.05E-52 | -1.69E-46 |
| MS.gene057734 | MS.gene36105 | 0.820477 | 6.72E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene36105 | 0.812795 | 3.54E-51 | -1.69E-46 |
| MS.gene057823 | MS.gene36105 | 0.824215 | 9.11E-54 | -1.69E-46 |
| MS.gene057856 | MS.gene36105 | 0.808569 | 2.90E-50 | -1.69E-46 |
| MS.gene058007 | MS.gene36105 | 0.861922 | 7.29E-64 | -1.69E-46 |
| MS.gene058075 | MS.gene36105 | 0.805843 | 1.10E-49 | -1.69E-46 |
| MS.gene058090 | MS.gene36105 | 0.809143 | 2.19E-50 | -1.69E-46 |
| MS.gene058120 | MS.gene36105 | 0.82809 | 1.09E-54 | -1.69E-46 |
| MS.gene058376 | MS.gene36105 | 0.859198 | 4.88E-63 | -1.69E-46 |
| MS.gene058444 | MS.gene36105 | 0.849937 | 2.35E-60 | -1.69E-46 |
| MS.gene058700 | MS.gene36105 | 0.871753 | 5.37E-67 | -1.69E-46 |
| MS.gene058928 | MS.gene36105 | 0.822342 | 2.49E-53 | -1.69E-46 |
| MS.gene058948 | MS.gene36105 | 0.822201 | 2.69E-53 | -1.69E-46 |
| MS.gene059011 | MS.gene36105 | 0.809469 | 1.86E-50 | -1.69E-46 |
| MS.gene059082 | MS.gene36105 | 0.810152 | 1.33E-50 | -1.69E-46 |
| MS.gene059366 | MS.gene36105 | 0.806817 | 6.84E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene36105 | 0.846099 | 2.69E-59 | -1.69E-46 |
| MS.gene059455 | MS.gene36105 | 0.807799 | 4.24E-50 | -1.69E-46 |
| MS.gene059462 | MS.gene36105 | 0.801402 | 9.16E-49 | -1.69E-46 |
| MS.gene059674 | MS.gene36105 | 0.827656 | 1.39E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene36105 | 0.818417 | 1.98E-52 | -1.69E-46 |
| MS.gene059717 | MS.gene36105 | 0.82672 | 2.32E-54 | -1.69E-46 |
| MS.gene059807 | MS.gene36105 | 0.88386 | 3.14E-71 | -1.69E-46 |
| MS.gene059870 | MS.gene36105 | 0.831702 | 1.44E-55 | -1.69E-46 |
| MS.gene059876 | MS.gene36105 | 0.801639 | 8.19E-49 | -1.69E-46 |
| MS.gene059933 | MS.gene36105 | 0.805393 | 1.36E-49 | -1.69E-46 |
| MS.gene060372 | MS.gene36105 | 0.849559 | 2.99E-60 | -1.69E-46 |
| MS.gene060403 | MS.gene36105 | 0.844148 | 9.05E-59 | -1.69E-46 |
| MS.gene060835 | MS.gene36105 | 0.816469 | 5.44E-52 | -1.69E-46 |
| MS.gene060837 | MS.gene36105 | 0.824423 | 8.14E-54 | -1.69E-46 |
| MS.gene06097 | MS.gene36105 | 0.805721 | 1.16E-49 | -1.69E-46 |
| MS.gene061154 | MS.gene36105 | 0.862538 | 4.72E-64 | -1.69E-46 |
| MS.gene061159 | MS.gene36105 | 0.808243 | 3.41E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36105 | MS.gene066192 | PPI |
| MS.gene045724 | MS.gene36105 | PPI |
| MS.gene069717 | MS.gene36105 | PPI |
| MS.gene36105 | MS.gene42747 | PPI |
| MS.gene36105 | MS.gene62495 | PPI |
| MS.gene038976 | MS.gene36105 | PPI |
| MS.gene42746 | MS.gene36105 | PPI |
| MS.gene36105 | MS.gene068946 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36105.t1 | MTR_8g046460 | 93.284 | 268 | 12 | 2 | 1 | 262 | 1 | 268 | 1.13e-177 | 489 |
| MS.gene36105.t1 | MTR_2g064370 | 70.632 | 269 | 70 | 5 | 1 | 262 | 1 | 267 | 6.34e-131 | 372 |
| MS.gene36105.t1 | MTR_8g028425 | 57.143 | 154 | 63 | 2 | 72 | 223 | 92 | 244 | 6.34e-65 | 203 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36105.t1 | AT1G16320 | 69.545 | 220 | 66 | 1 | 44 | 262 | 54 | 273 | 4.07e-117 | 337 |
| MS.gene36105.t1 | AT1G79510 | 61.484 | 283 | 80 | 6 | 1 | 262 | 1 | 275 | 1.19e-116 | 335 |
| MS.gene36105.t1 | AT1G79510 | 61.484 | 283 | 80 | 6 | 1 | 262 | 1 | 275 | 1.19e-116 | 335 |
| MS.gene36105.t1 | AT2G46220 | 57.325 | 157 | 64 | 2 | 69 | 223 | 81 | 236 | 3.25e-66 | 206 |
Find 57 sgRNAs with CRISPR-Local
Find 101 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGAAACCGGTTTCGGTTT+TGG | 0.220818 | 8.3:+52626445 | MS.gene36105:CDS |
| GACCCTTTGAACACATTTAC+TGG | 0.240823 | 8.3:+52626161 | MS.gene36105:CDS |
| AGGTACTTCTCGGTATAAAT+TGG | 0.261999 | 8.3:+52626358 | MS.gene36105:CDS |
| AGAAGTACAAGTTGATCTTT+TGG | 0.270946 | 8.3:+52626189 | MS.gene36105:CDS |
| ACCTTAATTATGATATTTAT+AGG | 0.278702 | 8.3:+52625702 | MS.gene36105:CDS |
| ACCTATAAATATCATAATTA+AGG | 0.297853 | 8.3:-52625703 | None:intergenic |
| CCCCATGAAAATGTTGGATT+TGG | 0.313331 | 8.3:-52626494 | None:intergenic |
| TGGATTCTAGTTCATGTTCA+TGG | 0.337564 | 8.3:+52626522 | MS.gene36105:CDS |
| GAATAAAGAGTATTGAGAAA+TGG | 0.346750 | 8.3:-52625510 | None:intergenic |
| AATAAAGAGTATTGAGAAAT+GGG | 0.349742 | 8.3:-52625509 | None:intergenic |
| GTTTGGATGTATACAGAATA+TGG | 0.351747 | 8.3:+52626252 | MS.gene36105:CDS |
| TTGGTGTTTGAATCTTGATT+TGG | 0.370847 | 8.3:-52625468 | None:intergenic |
| TGTTTATCTTGAGTAGCTAA+TGG | 0.394872 | 8.3:-52625590 | None:intergenic |
| GAAGATGATGAAACCGGTTT+CGG | 0.396965 | 8.3:+52626439 | MS.gene36105:CDS |
| GTTGTTACCACCAGATGGTT+TGG | 0.412534 | 8.3:+52626592 | MS.gene36105:CDS |
| GTGAATTTCAAGGTACTTCT+CGG | 0.412707 | 8.3:+52626348 | MS.gene36105:CDS |
| GGAACTTGAGGGGTGTGCCT+AGG | 0.417152 | 8.3:+52626306 | MS.gene36105:CDS |
| TTTGTTTCGTGAGATTGGTT+TGG | 0.421815 | 8.3:+52626235 | MS.gene36105:CDS |
| GAACTTGAGGGGTGTGCCTA+GGG | 0.426698 | 8.3:+52626307 | MS.gene36105:CDS |
| ACCAAATCCAAAACCGAAAC+CGG | 0.442141 | 8.3:-52626452 | None:intergenic |
| CAACCTGTGCAGTGAAACTT+TGG | 0.444081 | 8.3:-52625553 | None:intergenic |
| AATGTTGGATTTGGACTAGC+AGG | 0.451399 | 8.3:-52626485 | None:intergenic |
| TTTCACTGCACAGGTTGCTC+AGG | 0.452221 | 8.3:+52625559 | MS.gene36105:CDS |
| GGGGTGTGCCTAGGGTTCCA+TGG | 0.454206 | 8.3:+52626315 | MS.gene36105:CDS |
| GGGTGTGCCTAGGGTTCCAT+GGG | 0.462556 | 8.3:+52626316 | MS.gene36105:CDS |
| TTGAATCTTGATTTGGATTG+AGG | 0.469278 | 8.3:-52625461 | None:intergenic |
| CAGAGAATGTGATATTGATC+AGG | 0.478427 | 8.3:+52626282 | MS.gene36105:CDS |
| TACCAGTAAATGTGTTCAAA+GGG | 0.481927 | 8.3:-52626163 | None:intergenic |
| TCCACAGAAGATGATGAAAC+CGG | 0.487224 | 8.3:+52626433 | MS.gene36105:CDS |
| AGTCCAAAGTTTCACTGCAC+AGG | 0.490628 | 8.3:+52625550 | MS.gene36105:CDS |
| GAACATGTAGCCAAACCATC+TGG | 0.493057 | 8.3:-52626602 | None:intergenic |
| ATACCAGTAAATGTGTTCAA+AGG | 0.496720 | 8.3:-52626164 | None:intergenic |
| GAAGCTAAAGGTGAATTTCA+AGG | 0.517611 | 8.3:+52626338 | MS.gene36105:CDS |
| GCAGTGAAACTTTGGACTAA+AGG | 0.527370 | 8.3:-52625545 | None:intergenic |
| ATCAATATCACATTCTCTGA+AGG | 0.533171 | 8.3:-52626278 | None:intergenic |
| AATTCACCTTTAGCTTCCCA+TGG | 0.534577 | 8.3:-52626332 | None:intergenic |
| TTAGCTTCCCATGGAACCCT+AGG | 0.536034 | 8.3:-52626323 | None:intergenic |
| TATTGATCAGGTGGAACTTG+AGG | 0.540071 | 8.3:+52626294 | MS.gene36105:CDS |
| AAAGGACCCCATGAAAATGT+TGG | 0.541364 | 8.3:-52626500 | None:intergenic |
| ATTGATCAGGTGGAACTTGA+GGG | 0.551874 | 8.3:+52626295 | MS.gene36105:CDS |
| ACCGGTTTCATCATCTTCTG+TGG | 0.561359 | 8.3:-52626434 | None:intergenic |
| GAAAGATTGAGATTGCAAAG+AGG | 0.569214 | 8.3:-52625431 | None:intergenic |
| AGGGTTCCATGGGAAGCTAA+AGG | 0.578430 | 8.3:+52626326 | MS.gene36105:CDS |
| AGGTCTTTAACAAAGATCAA+AGG | 0.587544 | 8.3:-52625683 | None:intergenic |
| AGACAGTTGTTACCACCAGA+TGG | 0.589181 | 8.3:+52626587 | MS.gene36105:CDS |
| TAAACAGAATCAGCATCAGA+AGG | 0.609028 | 8.3:+52625607 | MS.gene36105:CDS |
| AGAATGTGATATTGATCAGG+TGG | 0.610163 | 8.3:+52626285 | MS.gene36105:CDS |
| CTTCTCGGTATAAATTGGAT+CGG | 0.610878 | 8.3:+52626363 | MS.gene36105:CDS |
| TCAAGCAGTTAAGCACACAT+TGG | 0.624208 | 8.3:+52626556 | MS.gene36105:CDS |
| CGGTATAAATTGGATCGGAA+CGG | 0.634092 | 8.3:+52626368 | MS.gene36105:CDS |
| GAACATGAACTAGAATCCAA+AGG | 0.647700 | 8.3:-52626518 | None:intergenic |
| TGCTGTTAGAACCCTTCGTG+AGG | 0.651000 | 8.3:+52625655 | MS.gene36105:CDS |
| TTGATCAGGTGGAACTTGAG+GGG | 0.654298 | 8.3:+52626296 | MS.gene36105:CDS |
| CAAAGGCATATCCTCACGAA+GGG | 0.657035 | 8.3:-52625666 | None:intergenic |
| ATGTTGGATTTGGACTAGCA+GGG | 0.662829 | 8.3:-52626484 | None:intergenic |
| TCAAAGGCATATCCTCACGA+AGG | 0.664210 | 8.3:-52625667 | None:intergenic |
| CATGTAGCCAAACCATCTGG+TGG | 0.698747 | 8.3:-52626599 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACCTATAAATATCATAATTA+AGG | - | chr8.3:52625706-52625725 | None:intergenic | 15.0% |
| !! | ACCTTAATTATGATATTTAT+AGG | + | chr8.3:52625702-52625721 | MS.gene36105:CDS | 15.0% |
| !! | GATGATGTAATTAATATTTA+TGG | + | chr8.3:52625848-52625867 | MS.gene36105:intron | 15.0% |
| !!! | AAAAATTGGATTTTTAATGT+TGG | + | chr8.3:52625809-52625828 | MS.gene36105:intron | 15.0% |
| !!! | AAAATTGGATTTTTAATGTT+GGG | + | chr8.3:52625810-52625829 | MS.gene36105:intron | 15.0% |
| !!! | TAAAAAAAGTTAATTTTGAG+TGG | + | chr8.3:52626050-52626069 | MS.gene36105:intron | 15.0% |
| !!! | TAATTTGAATTGTGTTATTT+AGG | + | chr8.3:52625782-52625801 | MS.gene36105:intron | 15.0% |
| !! | GTTATTTAGGTGAAAAAAAT+TGG | + | chr8.3:52625795-52625814 | MS.gene36105:intron | 20.0% |
| !!! | AATAAAGAGTATTGAGAAAT+GGG | - | chr8.3:52625512-52625531 | None:intergenic | 20.0% |
| !!! | AATTTTGAGTGGAAAAAAAT+TGG | + | chr8.3:52626061-52626080 | MS.gene36105:intron | 20.0% |
| !!! | ATTTTGAGTGGAAAAAAATT+GGG | + | chr8.3:52626062-52626081 | MS.gene36105:intron | 20.0% |
| !!! | CTTTTTTTATACATACAAAG+TGG | - | chr8.3:52626039-52626058 | None:intergenic | 20.0% |
| !!! | GTGAATATATGGTTTTTAAT+TGG | + | chr8.3:52625882-52625901 | MS.gene36105:intron | 20.0% |
| ! | ACCATATATTCACATCTAAA+AGG | - | chr8.3:52625875-52625894 | None:intergenic | 25.0% |
| ! | TTGCTTTCGATGTAAATATA+TGG | + | chr8.3:52625755-52625774 | MS.gene36105:intron | 25.0% |
| !! | ACCTTTTAGATGTGAATATA+TGG | + | chr8.3:52625871-52625890 | MS.gene36105:intron | 25.0% |
| !! | TATAGGTAATTTTCTCATCT+GGG | + | chr8.3:52625719-52625738 | MS.gene36105:intron | 25.0% |
| !! | TGTTGGGTTTAGTAATTTTA+AGG | + | chr8.3:52625826-52625845 | MS.gene36105:intron | 25.0% |
| !! | TTATAGGTAATTTTCTCATC+TGG | + | chr8.3:52625718-52625737 | MS.gene36105:intron | 25.0% |
| !! | TTATTTTCTGCAAAAAGAGT+TGG | + | chr8.3:52626088-52626107 | MS.gene36105:intron | 25.0% |
| !!! | AAGAGTTGGAATTTTAATGT+TGG | + | chr8.3:52626102-52626121 | MS.gene36105:intron | 25.0% |
| !!! | AGAGTTGGAATTTTAATGTT+GGG | + | chr8.3:52626103-52626122 | MS.gene36105:intron | 25.0% |
| !!! | GAATAAAGAGTATTGAGAAA+TGG | - | chr8.3:52625513-52625532 | None:intergenic | 25.0% |
| !!! | TTGGGTTTGATAATTTTTCA+GGG | + | chr8.3:52626121-52626140 | MS.gene36105:intron | 25.0% |
| AGGTCTTTAACAAAGATCAA+AGG | - | chr8.3:52625686-52625705 | None:intergenic | 30.0% | |
| ATACCAGTAAATGTGTTCAA+AGG | - | chr8.3:52626167-52626186 | None:intergenic | 30.0% | |
| ATCAATATCACATTCTCTGA+AGG | - | chr8.3:52626281-52626300 | None:intergenic | 30.0% | |
| GTTTGGATGTATACAGAATA+TGG | + | chr8.3:52626252-52626271 | MS.gene36105:CDS | 30.0% | |
| TACCAGTAAATGTGTTCAAA+GGG | - | chr8.3:52626166-52626185 | None:intergenic | 30.0% | |
| TGTTTATCTTGAGTAGCTAA+TGG | - | chr8.3:52625593-52625612 | None:intergenic | 30.0% | |
| ! | CTAATTCTGAGTAACTTGTA+AGG | + | chr8.3:52625912-52625931 | MS.gene36105:intron | 30.0% |
| ! | TCCAAATCCAACATTTTCAT+GGG | + | chr8.3:52626493-52626512 | MS.gene36105:CDS | 30.0% |
| ! | TTGGTGTTTGAATCTTGATT+TGG | - | chr8.3:52625471-52625490 | None:intergenic | 30.0% |
| !! | AGAATTTTGTTTCGTGAGAT+TGG | + | chr8.3:52626230-52626249 | MS.gene36105:CDS | 30.0% |
| !! | GATGAGTTTTATCTCAATCT+TGG | + | chr8.3:52625629-52625648 | MS.gene36105:CDS | 30.0% |
| !! | GTTGGGTTTGATAATTTTTC+AGG | + | chr8.3:52626120-52626139 | MS.gene36105:intron | 30.0% |
| !! | TTGAATCTTGATTTGGATTG+AGG | - | chr8.3:52625464-52625483 | None:intergenic | 30.0% |
| !!! | AGAAGTACAAGTTGATCTTT+TGG | + | chr8.3:52626189-52626208 | MS.gene36105:CDS | 30.0% |
| !!! | GAAGTACAAGTTGATCTTTT+GGG | + | chr8.3:52626190-52626209 | MS.gene36105:CDS | 30.0% |
| !!! | GTTTTGAAGAAGAAAGTGTT+TGG | - | chr8.3:52625490-52625509 | None:intergenic | 30.0% |
| AGAATGTGATATTGATCAGG+TGG | + | chr8.3:52626285-52626304 | MS.gene36105:CDS | 35.0% | |
| AGGTACTTCTCGGTATAAAT+TGG | + | chr8.3:52626358-52626377 | MS.gene36105:CDS | 35.0% | |
| CAGAGAATGTGATATTGATC+AGG | + | chr8.3:52626282-52626301 | MS.gene36105:CDS | 35.0% | |
| CTTCTCGGTATAAATTGGAT+CGG | + | chr8.3:52626363-52626382 | MS.gene36105:CDS | 35.0% | |
| GAAAGATTGAGATTGCAAAG+AGG | - | chr8.3:52625434-52625453 | None:intergenic | 35.0% | |
| GAACATGAACTAGAATCCAA+AGG | - | chr8.3:52626521-52626540 | None:intergenic | 35.0% | |
| GAAGCTAAAGGTGAATTTCA+AGG | + | chr8.3:52626338-52626357 | MS.gene36105:CDS | 35.0% | |
| TAAACAGAATCAGCATCAGA+AGG | + | chr8.3:52625607-52625626 | MS.gene36105:CDS | 35.0% | |
| ! | CAGGGATGATGTAACATTTT+TGG | + | chr8.3:52626139-52626158 | MS.gene36105:intron | 35.0% |
| ! | CCAAATCCAACATTTTCATG+GGG | + | chr8.3:52626494-52626513 | MS.gene36105:CDS | 35.0% |
| ! | GTCCAAATCCAACATTTTCA+TGG | + | chr8.3:52626492-52626511 | MS.gene36105:CDS | 35.0% |
| ! | GTGAATTTCAAGGTACTTCT+CGG | + | chr8.3:52626348-52626367 | MS.gene36105:CDS | 35.0% |
| ! | TTTGTTTCGTGAGATTGGTT+TGG | + | chr8.3:52626235-52626254 | MS.gene36105:CDS | 35.0% |
| !! | TGGATTCTAGTTCATGTTCA+TGG | + | chr8.3:52626522-52626541 | MS.gene36105:CDS | 35.0% |
| AAAGGACCCCATGAAAATGT+TGG | - | chr8.3:52626503-52626522 | None:intergenic | 40.0% | |
| AAATGCCGATATAGTTAGGC+TGG | + | chr8.3:52625950-52625969 | MS.gene36105:intron | 40.0% | |
| ACCAAATCCAAAACCGAAAC+CGG | - | chr8.3:52626455-52626474 | None:intergenic | 40.0% | |
| ATTGATCAGGTGGAACTTGA+GGG | + | chr8.3:52626295-52626314 | MS.gene36105:CDS | 40.0% | |
| CCCCATGAAAATGTTGGATT+TGG | - | chr8.3:52626497-52626516 | None:intergenic | 40.0% | |
| CGGTATAAATTGGATCGGAA+CGG | + | chr8.3:52626368-52626387 | MS.gene36105:CDS | 40.0% | |
| GACCCTTTGAACACATTTAC+TGG | + | chr8.3:52626161-52626180 | MS.gene36105:CDS | 40.0% | |
| GCAGTGAAACTTTGGACTAA+AGG | - | chr8.3:52625548-52625567 | None:intergenic | 40.0% | |
| TATTGATCAGGTGGAACTTG+AGG | + | chr8.3:52626294-52626313 | MS.gene36105:CDS | 40.0% | |
| TCAAGCAGTTAAGCACACAT+TGG | + | chr8.3:52626556-52626575 | MS.gene36105:CDS | 40.0% | |
| TCCACAGAAGATGATGAAAC+CGG | + | chr8.3:52626433-52626452 | MS.gene36105:CDS | 40.0% | |
| TGGCAAATGCCGATATAGTT+AGG | + | chr8.3:52625946-52625965 | MS.gene36105:intron | 40.0% | |
| ! | AACATTTTCATGGGGTCCTT+TGG | + | chr8.3:52626502-52626521 | MS.gene36105:CDS | 40.0% |
| ! | AATTCACCTTTAGCTTCCCA+TGG | - | chr8.3:52626335-52626354 | None:intergenic | 40.0% |
| ! | GAAGATGATGAAACCGGTTT+CGG | + | chr8.3:52626439-52626458 | MS.gene36105:CDS | 40.0% |
| !! | AATGTTGGATTTGGACTAGC+AGG | - | chr8.3:52626488-52626507 | None:intergenic | 40.0% |
| !! | AGTTGATCTTTTGGGCATTG+AGG | + | chr8.3:52626198-52626217 | MS.gene36105:CDS | 40.0% |
| !! | ATGTTGGATTTGGACTAGCA+GGG | - | chr8.3:52626487-52626506 | None:intergenic | 40.0% |
| !!! | TTTTGGGCATTGAGGTTTCA+TGG | + | chr8.3:52626206-52626225 | MS.gene36105:CDS | 40.0% |
| AGACAGTTGTTACCACCAGA+TGG | + | chr8.3:52626587-52626606 | MS.gene36105:CDS | 45.0% | |
| AGTCCAAAGTTTCACTGCAC+AGG | + | chr8.3:52625550-52625569 | MS.gene36105:CDS | 45.0% | |
| CAACCTGTGCAGTGAAACTT+TGG | - | chr8.3:52625556-52625575 | None:intergenic | 45.0% | |
| GAACATGTAGCCAAACCATC+TGG | - | chr8.3:52626605-52626624 | None:intergenic | 45.0% | |
| GGTGTCCAGCCTAACTATAT+CGG | - | chr8.3:52625958-52625977 | None:intergenic | 45.0% | |
| GTTGTTACCACCAGATGGTT+TGG | + | chr8.3:52626592-52626611 | MS.gene36105:CDS | 45.0% | |
| TTGATCAGGTGGAACTTGAG+GGG | + | chr8.3:52626296-52626315 | MS.gene36105:CDS | 45.0% | |
| ! | ACCGGTTTCATCATCTTCTG+TGG | - | chr8.3:52626437-52626456 | None:intergenic | 45.0% |
| ! | CAAAGGCATATCCTCACGAA+GGG | - | chr8.3:52625669-52625688 | None:intergenic | 45.0% |
| ! | TCAAAGGCATATCCTCACGA+AGG | - | chr8.3:52625670-52625689 | None:intergenic | 45.0% |
| !! | GATGAAACCGGTTTCGGTTT+TGG | + | chr8.3:52626445-52626464 | MS.gene36105:CDS | 45.0% |
| !!! | ACCGGTTTCGGTTTTGGATT+TGG | + | chr8.3:52626451-52626470 | MS.gene36105:CDS | 45.0% |
| ACTACGAGTCGTTCGAACCT+AGG | - | chr8.3:52625985-52626004 | None:intergenic | 50.0% | |
| AGGGTTCCATGGGAAGCTAA+AGG | + | chr8.3:52626326-52626345 | MS.gene36105:CDS | 50.0% | |
| AGTCGTTCGAACCTAGGTGA+AGG | - | chr8.3:52625979-52625998 | None:intergenic | 50.0% | |
| CATGTAGCCAAACCATCTGG+TGG | - | chr8.3:52626602-52626621 | None:intergenic | 50.0% | |
| CTTGTAAGGCCTAGCTCAAC+TGG | + | chr8.3:52625926-52625945 | MS.gene36105:intron | 50.0% | |
| TAGGTTCGAACGACTCGTAG+TGG | + | chr8.3:52625984-52626003 | MS.gene36105:intron | 50.0% | |
| TGCTGTTAGAACCCTTCGTG+AGG | + | chr8.3:52625655-52625674 | MS.gene36105:CDS | 50.0% | |
| TTAGCTTCCCATGGAACCCT+AGG | - | chr8.3:52626326-52626345 | None:intergenic | 50.0% | |
| TTTCACTGCACAGGTTGCTC+AGG | + | chr8.3:52625559-52625578 | MS.gene36105:CDS | 50.0% | |
| CGGCATTTGCCAGTTGAGCT+AGG | - | chr8.3:52625938-52625957 | None:intergenic | 55.0% | |
| TAGGCTGGACACCTTCACCT+AGG | + | chr8.3:52625965-52625984 | MS.gene36105:intron | 55.0% | |
| ! | GAACTTGAGGGGTGTGCCTA+GGG | + | chr8.3:52626307-52626326 | MS.gene36105:CDS | 55.0% |
| ! | TCGAACGACTCGTAGTGGAG+TGG | + | chr8.3:52625989-52626008 | MS.gene36105:intron | 55.0% |
| GGGTGTGCCTAGGGTTCCAT+GGG | + | chr8.3:52626316-52626335 | MS.gene36105:CDS | 60.0% | |
| ! | GGAACTTGAGGGGTGTGCCT+AGG | + | chr8.3:52626306-52626325 | MS.gene36105:CDS | 60.0% |
| GGGGTGTGCCTAGGGTTCCA+TGG | + | chr8.3:52626315-52626334 | MS.gene36105:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 52625422 | 52626628 | 52625422 | ID=MS.gene36105 |
| chr8.3 | mRNA | 52625422 | 52626628 | 52625422 | ID=MS.gene36105.t1;Parent=MS.gene36105 |
| chr8.3 | exon | 52625422 | 52625723 | 52625422 | ID=MS.gene36105.t1.exon1;Parent=MS.gene36105.t1 |
| chr8.3 | CDS | 52625422 | 52625723 | 52625422 | ID=cds.MS.gene36105.t1;Parent=MS.gene36105.t1 |
| chr8.3 | exon | 52626142 | 52626628 | 52626142 | ID=MS.gene36105.t1.exon2;Parent=MS.gene36105.t1 |
| chr8.3 | CDS | 52626142 | 52626628 | 52626142 | ID=cds.MS.gene36105.t1;Parent=MS.gene36105.t1 |
| Gene Sequence |
| Protein sequence |
