Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062524.t1 | XP_013445797.1 | 94.7 | 914 | 45 | 2 | 1 | 912 | 1 | 913 | 0.00E+00 | 1780.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062524.t1 | Q94A41 | 66.5 | 843 | 256 | 9 | 69 | 908 | 66 | 885 | 0.0e+00 | 1169.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062524.t1 | A0A072TSJ2 | 94.7 | 914 | 45 | 2 | 1 | 912 | 1 | 913 | 0.0e+00 | 1780.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene062524 | 0.835244 | 1.88E-56 | -1.69E-46 |
| MS.gene049170 | MS.gene062524 | 0.807049 | 6.11E-50 | -1.69E-46 |
| MS.gene049488 | MS.gene062524 | 0.848708 | 5.16E-60 | -1.69E-46 |
| MS.gene050315 | MS.gene062524 | 0.800577 | 1.35E-48 | -1.69E-46 |
| MS.gene050426 | MS.gene062524 | -0.837034 | 6.60E-57 | -1.69E-46 |
| MS.gene050670 | MS.gene062524 | 0.84709 | 1.44E-59 | -1.69E-46 |
| MS.gene05081 | MS.gene062524 | 0.844414 | 7.67E-59 | -1.69E-46 |
| MS.gene05105 | MS.gene062524 | 0.835679 | 1.46E-56 | -1.69E-46 |
| MS.gene051208 | MS.gene062524 | 0.801005 | 1.10E-48 | -1.69E-46 |
| MS.gene051387 | MS.gene062524 | 0.814074 | 1.85E-51 | -1.69E-46 |
| MS.gene051525 | MS.gene062524 | 0.858143 | 1.01E-62 | -1.69E-46 |
| MS.gene051552 | MS.gene062524 | -0.803616 | 3.20E-49 | -1.69E-46 |
| MS.gene051588 | MS.gene062524 | 0.811047 | 8.51E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene062524 | 0.84887 | 4.65E-60 | -1.69E-46 |
| MS.gene052011 | MS.gene062524 | -0.850439 | 1.70E-60 | -1.69E-46 |
| MS.gene052128 | MS.gene062524 | -0.824764 | 6.76E-54 | -1.69E-46 |
| MS.gene052134 | MS.gene062524 | 0.835768 | 1.38E-56 | -1.69E-46 |
| MS.gene052135 | MS.gene062524 | 0.840645 | 7.68E-58 | -1.69E-46 |
| MS.gene052136 | MS.gene062524 | 0.816048 | 6.76E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene062524 | 0.81787 | 2.64E-52 | -1.69E-46 |
| MS.gene052253 | MS.gene062524 | 0.841326 | 5.09E-58 | -1.69E-46 |
| MS.gene052322 | MS.gene062524 | 0.80683 | 6.80E-50 | -1.69E-46 |
| MS.gene052340 | MS.gene062524 | 0.809734 | 1.63E-50 | -1.69E-46 |
| MS.gene052346 | MS.gene062524 | 0.821191 | 4.60E-53 | -1.69E-46 |
| MS.gene052414 | MS.gene062524 | 0.862199 | 6.00E-64 | -1.69E-46 |
| MS.gene052481 | MS.gene062524 | 0.844378 | 7.85E-59 | -1.69E-46 |
| MS.gene052485 | MS.gene062524 | 0.817815 | 2.71E-52 | -1.69E-46 |
| MS.gene052501 | MS.gene062524 | 0.837779 | 4.25E-57 | -1.69E-46 |
| MS.gene052505 | MS.gene062524 | 0.843179 | 1.64E-58 | -1.69E-46 |
| MS.gene052589 | MS.gene062524 | 0.831118 | 2.00E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene062524 | 0.806726 | 7.15E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene062524 | 0.836957 | 6.90E-57 | -1.69E-46 |
| MS.gene053330 | MS.gene062524 | 0.823548 | 1.31E-53 | -1.69E-46 |
| MS.gene053480 | MS.gene062524 | 0.801628 | 8.23E-49 | -1.69E-46 |
| MS.gene053758 | MS.gene062524 | 0.810829 | 9.49E-51 | -1.69E-46 |
| MS.gene053873 | MS.gene062524 | 0.839368 | 1.65E-57 | -1.69E-46 |
| MS.gene054102 | MS.gene062524 | 0.867411 | 1.40E-65 | -1.69E-46 |
| MS.gene054107 | MS.gene062524 | 0.829233 | 5.77E-55 | -1.69E-46 |
| MS.gene054110 | MS.gene062524 | 0.829026 | 6.48E-55 | -1.69E-46 |
| MS.gene054183 | MS.gene062524 | 0.812669 | 3.77E-51 | -1.69E-46 |
| MS.gene054349 | MS.gene062524 | 0.804614 | 1.99E-49 | -1.69E-46 |
| MS.gene054556 | MS.gene062524 | 0.811355 | 7.30E-51 | -1.69E-46 |
| MS.gene054719 | MS.gene062524 | 0.846768 | 1.76E-59 | -1.69E-46 |
| MS.gene055116 | MS.gene062524 | 0.818901 | 1.54E-52 | -1.69E-46 |
| MS.gene055369 | MS.gene062524 | 0.818914 | 1.53E-52 | -1.69E-46 |
| MS.gene055370 | MS.gene062524 | 0.832044 | 1.18E-55 | -1.69E-46 |
| MS.gene055539 | MS.gene062524 | 0.857224 | 1.89E-62 | -1.69E-46 |
| MS.gene05553 | MS.gene062524 | 0.838351 | 3.03E-57 | -1.69E-46 |
| MS.gene05556 | MS.gene062524 | 0.802797 | 4.73E-49 | -1.69E-46 |
| MS.gene05569 | MS.gene062524 | 0.80062 | 1.32E-48 | -1.69E-46 |
| MS.gene055741 | MS.gene062524 | 0.850418 | 1.72E-60 | -1.69E-46 |
| MS.gene055744 | MS.gene062524 | 0.855747 | 5.13E-62 | -1.69E-46 |
| MS.gene055909 | MS.gene062524 | 0.804151 | 2.48E-49 | -1.69E-46 |
| MS.gene055911 | MS.gene062524 | 0.809251 | 2.08E-50 | -1.69E-46 |
| MS.gene05594 | MS.gene062524 | 0.83753 | 4.92E-57 | -1.69E-46 |
| MS.gene056337 | MS.gene062524 | 0.834549 | 2.81E-56 | -1.69E-46 |
| MS.gene056351 | MS.gene062524 | 0.820016 | 8.57E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene062524 | 0.822901 | 1.85E-53 | -1.69E-46 |
| MS.gene056514 | MS.gene062524 | 0.83473 | 2.53E-56 | -1.69E-46 |
| MS.gene05664 | MS.gene062524 | 0.804602 | 2.00E-49 | -1.69E-46 |
| MS.gene056659 | MS.gene062524 | 0.845541 | 3.81E-59 | -1.69E-46 |
| MS.gene056782 | MS.gene062524 | 0.819264 | 1.27E-52 | -1.69E-46 |
| MS.gene056877 | MS.gene062524 | 0.822289 | 2.57E-53 | -1.69E-46 |
| MS.gene05702 | MS.gene062524 | 0.809463 | 1.87E-50 | -1.69E-46 |
| MS.gene057048 | MS.gene062524 | 0.820038 | 8.47E-53 | -1.69E-46 |
| MS.gene057124 | MS.gene062524 | 0.820812 | 5.63E-53 | -1.69E-46 |
| MS.gene057196 | MS.gene062524 | 0.811183 | 7.95E-51 | -1.69E-46 |
| MS.gene057289 | MS.gene062524 | 0.805957 | 1.04E-49 | -1.69E-46 |
| MS.gene057332 | MS.gene062524 | 0.81232 | 4.50E-51 | -1.69E-46 |
| MS.gene057476 | MS.gene062524 | 0.810224 | 1.28E-50 | -1.69E-46 |
| MS.gene057749 | MS.gene062524 | 0.883034 | 6.31E-71 | -1.69E-46 |
| MS.gene057823 | MS.gene062524 | 0.882888 | 7.14E-71 | -1.69E-46 |
| MS.gene057825 | MS.gene062524 | 0.838978 | 2.09E-57 | -1.69E-46 |
| MS.gene057888 | MS.gene062524 | 0.812713 | 3.69E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene062524 | 0.823972 | 1.04E-53 | -1.69E-46 |
| MS.gene058376 | MS.gene062524 | 0.856802 | 2.51E-62 | -1.69E-46 |
| MS.gene058444 | MS.gene062524 | 0.85605 | 4.18E-62 | -1.69E-46 |
| MS.gene058700 | MS.gene062524 | 0.820739 | 5.85E-53 | -1.69E-46 |
| MS.gene058710 | MS.gene062524 | 0.811787 | 5.88E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene062524 | 0.812492 | 4.13E-51 | -1.69E-46 |
| MS.gene05886 | MS.gene062524 | 0.808935 | 2.42E-50 | -1.69E-46 |
| MS.gene058948 | MS.gene062524 | 0.826327 | 2.88E-54 | -1.69E-46 |
| MS.gene059011 | MS.gene062524 | 0.821187 | 4.61E-53 | -1.69E-46 |
| MS.gene059141 | MS.gene062524 | 0.831293 | 1.81E-55 | -1.69E-46 |
| MS.gene059420 | MS.gene062524 | 0.865672 | 4.98E-65 | -1.69E-46 |
| MS.gene059455 | MS.gene062524 | 0.811794 | 5.86E-51 | -1.69E-46 |
| MS.gene059512 | MS.gene062524 | 0.835787 | 1.37E-56 | -1.69E-46 |
| MS.gene059688 | MS.gene062524 | 0.815163 | 1.06E-51 | -1.69E-46 |
| MS.gene059695 | MS.gene062524 | 0.801519 | 8.67E-49 | -1.69E-46 |
| MS.gene060403 | MS.gene062524 | 0.840643 | 7.68E-58 | -1.69E-46 |
| MS.gene060485 | MS.gene062524 | 0.84987 | 2.45E-60 | -1.69E-46 |
| MS.gene061154 | MS.gene062524 | 0.801493 | 8.77E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062524.t1 | MTR_8g468990 | 95.952 | 914 | 34 | 2 | 1 | 912 | 1 | 913 | 0.0 | 1776 |
| MS.gene062524.t1 | MTR_8g468990 | 95.771 | 804 | 31 | 2 | 1 | 802 | 1 | 803 | 0.0 | 1551 |
| MS.gene062524.t1 | MTR_8g468990 | 96.601 | 765 | 25 | 1 | 148 | 912 | 1 | 764 | 0.0 | 1528 |
| MS.gene062524.t1 | MTR_7g013300 | 61.000 | 400 | 149 | 5 | 513 | 907 | 562 | 959 | 5.98e-176 | 535 |
| MS.gene062524.t1 | MTR_1g026170 | 48.485 | 396 | 193 | 6 | 517 | 908 | 43 | 431 | 1.11e-131 | 402 |
| MS.gene062524.t1 | MTR_1g019440 | 48.259 | 402 | 190 | 8 | 520 | 908 | 25 | 421 | 2.77e-124 | 382 |
| MS.gene062524.t1 | MTR_1g019480 | 40.887 | 406 | 197 | 12 | 520 | 910 | 25 | 402 | 1.94e-90 | 293 |
| MS.gene062524.t1 | MTR_3g062030 | 41.250 | 160 | 67 | 5 | 632 | 789 | 90 | 224 | 5.53e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene062524.t1 | AT1G69830 | 67.378 | 843 | 249 | 9 | 69 | 908 | 66 | 885 | 0.0 | 1176 |
| MS.gene062524.t1 | AT1G76130 | 48.990 | 396 | 191 | 6 | 517 | 908 | 24 | 412 | 4.83e-132 | 402 |
| MS.gene062524.t1 | AT1G76130 | 48.990 | 396 | 191 | 6 | 517 | 908 | 24 | 412 | 4.83e-132 | 402 |
| MS.gene062524.t1 | AT4G25000 | 45.614 | 399 | 203 | 8 | 520 | 908 | 27 | 421 | 8.24e-110 | 345 |
Find 218 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTTCATTGGGGAGTTTC+TGG | 0.101267 | 8.1:+44648605 | MS.gene062524:CDS |
| GTAGCAAAAGTTTCAAATTT+TGG | 0.135634 | 8.1:-44647829 | None:intergenic |
| AAACTATTGTCTACCTTTAT+AGG | 0.158801 | 8.1:-44649170 | None:intergenic |
| CTCTTGGCTTTACTGTTATT+TGG | 0.163991 | 8.1:+44651426 | MS.gene062524:CDS |
| TTGACTTTGTCAGAGGATTT+TGG | 0.181955 | 8.1:+44653654 | MS.gene062524:CDS |
| AATGGTTTCTTGAGCTTCTT+TGG | 0.188878 | 8.1:-44651156 | None:intergenic |
| AAGGAGGATGGTAATTTAAT+TGG | 0.189825 | 8.1:+44649575 | MS.gene062524:CDS |
| AATGGTATTTGGAACATATT+TGG | 0.190723 | 8.1:+44652047 | MS.gene062524:CDS |
| TTGTATGCCAAGGGTTTAAT+TGG | 0.200911 | 8.1:+44651342 | MS.gene062524:CDS |
| GAAATAAGGCATTTGGTTAC+TGG | 0.216838 | 8.1:+44651101 | MS.gene062524:CDS |
| GAGAGAGAGTGTGAAGAATT+TGG | 0.220547 | 8.1:-44647733 | None:intergenic |
| CATTGGTTGCTTCCGAATTC+AGG | 0.249503 | 8.1:-44650117 | None:intergenic |
| CTTCCCTTTCCACTTCCTTT+TGG | 0.255177 | 8.1:-44650855 | None:intergenic |
| ATTTATATAATTTAAATTCT+AGG | 0.265509 | 8.1:+44651498 | MS.gene062524:CDS |
| ACTATGGTTCTTCTTGTTCT+TGG | 0.272636 | 8.1:+44647776 | MS.gene062524:CDS |
| ACAGTAACTTCCTTGGTTAA+AGG | 0.278492 | 8.1:-44650220 | None:intergenic |
| TATTTCATTGATTATTTCAT+TGG | 0.290467 | 8.1:-44651084 | None:intergenic |
| ATGAAATAATCAATGAAATA+AGG | 0.296161 | 8.1:+44651087 | MS.gene062524:CDS |
| GTTGCAATCTACCTGGAAAA+TGG | 0.298483 | 8.1:+44648582 | MS.gene062524:CDS |
| TGTGGAATCCGAGGTTGTTT+TGG | 0.299314 | 8.1:+44651259 | MS.gene062524:CDS |
| AAGAACACTGACGGAGTTCC+TGG | 0.299428 | 8.1:-44655003 | None:intergenic |
| ACTTCCGGTAGCTCAGTTAT+TGG | 0.310168 | 8.1:+44650990 | MS.gene062524:CDS |
| CTGGAAAATGGATTCTTCAT+TGG | 0.311736 | 8.1:+44648594 | MS.gene062524:CDS |
| ATTTGGCTTGAAACGGTTAA+TGG | 0.313857 | 8.1:-44647716 | None:intergenic |
| TTAAGATAAATGAAAATTCA+TGG | 0.318297 | 8.1:+44650928 | MS.gene062524:CDS |
| ATTAGATCAAGGGAAGGATT+TGG | 0.334020 | 8.1:+44648538 | MS.gene062524:CDS |
| TATTTGGAGGTCGTCTCAAC+TGG | 0.344947 | 8.1:+44652063 | MS.gene062524:CDS |
| TGGAAAATGGATTCTTCATT+GGG | 0.346361 | 8.1:+44648595 | MS.gene062524:CDS |
| ACTTCCAAGATTATTAACTA+TGG | 0.347819 | 8.1:+44647760 | MS.gene062524:CDS |
| TACGTCCCTCTCTCAACTTC+CGG | 0.350003 | 8.1:+44650975 | MS.gene062524:CDS |
| AGTTTGGCGAACTCAATTAA+AGG | 0.353674 | 8.1:+44650423 | MS.gene062524:CDS |
| GTGAAAGAATTTCATAAAGT+TGG | 0.354126 | 8.1:+44651966 | MS.gene062524:CDS |
| ATCAGAATAAGAATGGTATT+TGG | 0.356883 | 8.1:+44652036 | MS.gene062524:CDS |
| AAGTTCAGCACAAATCTCTT+TGG | 0.358310 | 8.1:+44650875 | MS.gene062524:CDS |
| GCTATCTTGAACTTTGTCAT+TGG | 0.359902 | 8.1:-44650134 | None:intergenic |
| AATCAATGAAATAAGGCATT+TGG | 0.365401 | 8.1:+44651094 | MS.gene062524:CDS |
| AATTGGGAGTCTAATAAATC+TGG | 0.367354 | 8.1:+44651359 | MS.gene062524:CDS |
| AAGAATGGTTATGCTGGTTA+AGG | 0.367519 | 8.1:+44652707 | MS.gene062524:CDS |
| TCCTGGATCTATTCCTATAA+AGG | 0.369975 | 8.1:+44649157 | MS.gene062524:CDS |
| ATCCCTTGGCATGTATCCTT+CGG | 0.372788 | 8.1:-44651477 | None:intergenic |
| ACGGAAGAGACTACAACATT+TGG | 0.373536 | 8.1:+44656061 | MS.gene062524:CDS |
| TACTCTCCCACGCAAAAGTA+TGG | 0.374781 | 8.1:-44653713 | None:intergenic |
| TACCAGTTCAATTCTGTTGA+TGG | 0.381799 | 8.1:-44647914 | None:intergenic |
| AGAACCATAGTTAATAATCT+TGG | 0.390357 | 8.1:-44647764 | None:intergenic |
| TCTCTATTCGGAAACGGAAC+GGG | 0.392449 | 8.1:+44655070 | MS.gene062524:CDS |
| AGAGATGAAATTGGATATGA+TGG | 0.395833 | 8.1:+44653623 | MS.gene062524:intron |
| GAGTTTCTGGTGTGGATGAT+AGG | 0.395879 | 8.1:+44648618 | MS.gene062524:CDS |
| ATCTAACGTTATCCTGAATT+CGG | 0.396073 | 8.1:+44650105 | MS.gene062524:CDS |
| AATTTAATTGGACCTAAAAC+AGG | 0.396876 | 8.1:+44649587 | MS.gene062524:CDS |
| TCCTCTGGTAAACTATCTTA+AGG | 0.405222 | 8.1:+44649556 | MS.gene062524:CDS |
| AGTTCAGCACAAATCTCTTT+GGG | 0.405517 | 8.1:+44650876 | MS.gene062524:CDS |
| CAGTTATACATATGGTGAAA+TGG | 0.406347 | 8.1:+44653748 | MS.gene062524:CDS |
| TAGAGATGATTCAAGAAGTT+GGG | 0.407862 | 8.1:+44650351 | MS.gene062524:CDS |
| TCCCTTGGCATGTATCCTTC+GGG | 0.412074 | 8.1:-44651476 | None:intergenic |
| GTAGAGATGATTCAAGAAGT+TGG | 0.415469 | 8.1:+44650350 | MS.gene062524:CDS |
| TCTTTATATGCTACAGTTTG+TGG | 0.420943 | 8.1:-44650397 | None:intergenic |
| TAGCGGCACTTCTCTCTATT+CGG | 0.421298 | 8.1:+44655058 | MS.gene062524:CDS |
| TGGAGGCAACTCAGGTGATT+CGG | 0.422854 | 8.1:-44651285 | None:intergenic |
| TTGGCGCTTGTCGGATCAGC+AGG | 0.425045 | 8.1:+44654468 | MS.gene062524:CDS |
| GAGAATTCAGAGCTTATAGT+TGG | 0.428613 | 8.1:+44648560 | MS.gene062524:CDS |
| TAGCATATAAAGACACAGTT+TGG | 0.430766 | 8.1:+44650407 | MS.gene062524:CDS |
| TCTTTCAATTTCTTGAAGAA+TGG | 0.430927 | 8.1:-44651174 | None:intergenic |
| TGAGGTTCTAAAGATACTAT+AGG | 0.434562 | 8.1:-44651210 | None:intergenic |
| ATAATGTCGGGAACAGGCAC+AGG | 0.439096 | 8.1:+44651311 | MS.gene062524:CDS |
| TCCTGTGAATGATCAATGTT+TGG | 0.444598 | 8.1:-44652664 | None:intergenic |
| CGGAAGAGACTACAACATTT+GGG | 0.449059 | 8.1:+44656062 | MS.gene062524:CDS |
| TGTATGCCAAGGGTTTAATT+GGG | 0.452945 | 8.1:+44651343 | MS.gene062524:CDS |
| TCAAGATAGCAGCAGTGAAT+CGG | 0.456884 | 8.1:+44650147 | MS.gene062524:CDS |
| CTCTCTATTCGGAAACGGAA+CGG | 0.458500 | 8.1:+44655069 | MS.gene062524:CDS |
| TAGACTCCCAATTAAACCCT+TGG | 0.463111 | 8.1:-44651349 | None:intergenic |
| ACCATTCTTATTCTGATGCT+CGG | 0.463781 | 8.1:-44652030 | None:intergenic |
| TCCCACGCAAAAGTATGGTT+TGG | 0.464670 | 8.1:-44653708 | None:intergenic |
| TCCCATCAACAGAATTGAAC+TGG | 0.465937 | 8.1:+44647912 | MS.gene062524:CDS |
| TGAGAAACGATATTAAAGAA+TGG | 0.466017 | 8.1:+44652692 | MS.gene062524:CDS |
| CACAGAGTGAAGAATCCCTT+TGG | 0.466936 | 8.1:-44653855 | None:intergenic |
| TTTAAATTATATAAATCCCT+TGG | 0.473963 | 8.1:-44651491 | None:intergenic |
| GTGAAGAATTTGGCTTGAAA+CGG | 0.474351 | 8.1:-44647723 | None:intergenic |
| ATCTTGATTGTGCAGTAAAT+GGG | 0.476190 | 8.1:+44649109 | MS.gene062524:intron |
| GATGTTGATGATTTCTTCAA+AGG | 0.480111 | 8.1:-44649291 | None:intergenic |
| GTTATTGACAGTAACTTCCT+TGG | 0.481501 | 8.1:-44650227 | None:intergenic |
| GATTCCCTCAGTTATACATA+TGG | 0.481642 | 8.1:+44653740 | MS.gene062524:CDS |
| AAGAAACTTCAAAGTTCCTC+TGG | 0.481998 | 8.1:+44649541 | MS.gene062524:CDS |
| CCCCGTGATATGATACCTCC+TGG | 0.484490 | 8.1:+44649140 | MS.gene062524:CDS |
| ATAAACGTCCCTTTCTGACT+TGG | 0.484661 | 8.1:-44655947 | None:intergenic |
| TCGACGCAGGACGAGGAGAC+TGG | 0.485438 | 8.1:+44649497 | MS.gene062524:intron |
| TCTTCAAGAAATTGAAAGAC+TGG | 0.486638 | 8.1:+44651178 | MS.gene062524:CDS |
| CAGAAGATTGAATCTGTTGA+AGG | 0.487387 | 8.1:-44647864 | None:intergenic |
| ATAGTTAATAATCTTGGAAG+TGG | 0.488514 | 8.1:-44647758 | None:intergenic |
| ACCAGTTCAATTCTGTTGAT+GGG | 0.490268 | 8.1:-44647913 | None:intergenic |
| ATGTGAGTATTGGCGCTTGT+CGG | 0.492772 | 8.1:+44654459 | MS.gene062524:CDS |
| GCTAAAGAACTAGCATCTCT+TGG | 0.494064 | 8.1:+44651410 | MS.gene062524:CDS |
| CTCTACAAACTCCCCAATGA+AGG | 0.495764 | 8.1:-44650333 | None:intergenic |
| CACTTCTCTCTATTCGGAAA+CGG | 0.499973 | 8.1:+44655064 | MS.gene062524:CDS |
| TAAAATTACCAAGTCAGAAA+GGG | 0.503731 | 8.1:+44655939 | MS.gene062524:CDS |
| CTCGGAGAAAGCTGGAACTG+AGG | 0.506669 | 8.1:-44651228 | None:intergenic |
| ATCGCTGAAATCTCATCGTT+AGG | 0.506955 | 8.1:-44649357 | None:intergenic |
| TTAAAATTACCAAGTCAGAA+AGG | 0.510445 | 8.1:+44655938 | MS.gene062524:CDS |
| GTGTTTATAAGATTAGATCA+AGG | 0.510606 | 8.1:+44648527 | MS.gene062524:CDS |
| CGATCTGTTATGTAGCCAAA+AGG | 0.511112 | 8.1:+44650840 | MS.gene062524:intron |
| CATTTGATGTTACAACCAAA+GGG | 0.513448 | 8.1:+44653840 | MS.gene062524:CDS |
| ATAGCTTCCTCGGAGAAAGC+TGG | 0.514012 | 8.1:-44651236 | None:intergenic |
| TCCAGGAGGTATCATATCAC+GGG | 0.519553 | 8.1:-44649141 | None:intergenic |
| GCATTTGATGTTACAACCAA+AGG | 0.521112 | 8.1:+44653839 | MS.gene062524:CDS |
| TAGCCAAAAGGAAGTGGAAA+GGG | 0.521578 | 8.1:+44650852 | MS.gene062524:intron |
| ACTCTATCAGTGTCTCCGTT+AGG | 0.521785 | 8.1:+44650248 | MS.gene062524:CDS |
| ATGAAATTGGATATGATGGA+TGG | 0.522482 | 8.1:+44653627 | MS.gene062524:CDS |
| CATTGGAAAGATGTGAGTAT+TGG | 0.524075 | 8.1:+44654449 | MS.gene062524:CDS |
| GGCAGTGAGATAGTTTGAAA+TGG | 0.524772 | 8.1:-44647681 | None:intergenic |
| ATTTCTTCTATACAGGGGAG+GGG | 0.526902 | 8.1:+44652607 | MS.gene062524:intron |
| GTTATGTAGCCAAAAGGAAG+TGG | 0.527882 | 8.1:+44650846 | MS.gene062524:intron |
| TAATCTGCAGGTGGAGGGAA+AGG | 0.530804 | 8.1:+44648505 | MS.gene062524:intron |
| TGTTTATAAGATTAGATCAA+GGG | 0.533768 | 8.1:+44648528 | MS.gene062524:CDS |
| GGTATTTGGAACATATTTGG+AGG | 0.534787 | 8.1:+44652050 | MS.gene062524:CDS |
| CACATCCTTCAGTTCATCAA+TGG | 0.535296 | 8.1:-44651943 | None:intergenic |
| ATATTAAAGAATGGTTATGC+TGG | 0.535991 | 8.1:+44652701 | MS.gene062524:CDS |
| TTATATGCTACAGTTTGTGG+TGG | 0.536406 | 8.1:-44650394 | None:intergenic |
| GGATTCCACAATAGCTTCCT+CGG | 0.538172 | 8.1:-44651246 | None:intergenic |
| GTTTGTGGTGGATGAGGAGC+AGG | 0.542061 | 8.1:-44650382 | None:intergenic |
| AGACTACAACATTTGGGAGC+TGG | 0.543972 | 8.1:+44656068 | MS.gene062524:CDS |
| TTTCTCCGAGGAAGCTATTG+TGG | 0.544731 | 8.1:+44651241 | MS.gene062524:CDS |
| AAAGTTGGAATCAAAGTGCT+AGG | 0.546749 | 8.1:+44651981 | MS.gene062524:CDS |
| AGTCTAATAAATCTGGAAGA+TGG | 0.547837 | 8.1:+44651366 | MS.gene062524:CDS |
| AGTGCTGCCGGTGGTACTGC+AGG | 0.548738 | 8.1:+44653815 | MS.gene062524:CDS |
| GTAAACTATCTTAAGGAGGA+TGG | 0.551258 | 8.1:+44649563 | MS.gene062524:CDS |
| GGCCACCATCCCATAACACC+GGG | 0.551856 | 8.1:-44654499 | None:intergenic |
| CACAAACAAACCTGAAAATG+TGG | 0.557470 | 8.1:-44652113 | None:intergenic |
| TCCAAACATTGATCATTCAC+AGG | 0.559398 | 8.1:+44652663 | MS.gene062524:CDS |
| TAAATCTGGAAGATGGTACA+TGG | 0.559670 | 8.1:+44651373 | MS.gene062524:CDS |
| AAATTCATGGTTAAATAACA+AGG | 0.562174 | 8.1:+44650941 | MS.gene062524:CDS |
| GGGTATGAAATTGTATGCCA+AGG | 0.563869 | 8.1:+44651332 | MS.gene062524:CDS |
| ATAGTTGGTTGCAATCTACC+TGG | 0.564115 | 8.1:+44648575 | MS.gene062524:CDS |
| GCTACAGTTTGTGGTGGATG+AGG | 0.564756 | 8.1:-44650388 | None:intergenic |
| ATCCAGGAGGTATCATATCA+CGG | 0.565082 | 8.1:-44649142 | None:intergenic |
| ACCTTTATAGGAATAGATCC+AGG | 0.566563 | 8.1:-44649158 | None:intergenic |
| GAAGAAATCATCAACATCAC+CGG | 0.568860 | 8.1:+44649296 | MS.gene062524:CDS |
| GTTGCCAATAACTGAGCTAC+CGG | 0.569553 | 8.1:-44650994 | None:intergenic |
| GCCGAGCATCAGAATAAGAA+TGG | 0.569584 | 8.1:+44652029 | MS.gene062524:CDS |
| TGTAGAACTGCCTTTAACCA+AGG | 0.570430 | 8.1:+44650210 | MS.gene062524:CDS |
| AGAACACTGACGGAGTTCCT+GGG | 0.576561 | 8.1:-44655002 | None:intergenic |
| CAATGAAGGAAAATATCACC+TGG | 0.578377 | 8.1:-44650319 | None:intergenic |
| GTTGCTATGAAGATCGGTCC+TGG | 0.578469 | 8.1:+44655991 | MS.gene062524:CDS |
| TTTATAGAAAACCACGACAC+TGG | 0.578589 | 8.1:+44654538 | MS.gene062524:CDS |
| AAATGCACCTGCAGTACCAC+CGG | 0.579580 | 8.1:-44653822 | None:intergenic |
| ACAGGCAGAGAATCGTTGAC+TGG | 0.580120 | 8.1:+44653789 | MS.gene062524:CDS |
| TGGTTATGTAAAGGACTACA+TGG | 0.581785 | 8.1:+44653679 | MS.gene062524:CDS |
| TGGAGGCTTGACTTTGTCAG+AGG | 0.583959 | 8.1:+44653647 | MS.gene062524:CDS |
| TATAAGATTAGATCAAGGGA+AGG | 0.583994 | 8.1:+44648532 | MS.gene062524:CDS |
| AAATATAATCTGCAGGTGGA+GGG | 0.585441 | 8.1:+44648500 | MS.gene062524:intron |
| GAGTGAAGAGGCAGGCGAAG+AGG | 0.586230 | 8.1:+44651043 | MS.gene062524:CDS |
| GAAAGTTGTAAAGAGTGAAG+AGG | 0.588257 | 8.1:+44651031 | MS.gene062524:CDS |
| GTTGTAAAGAGTGAAGAGGC+AGG | 0.590094 | 8.1:+44651035 | MS.gene062524:CDS |
| TGTTTCTGAGCATTTCCTAA+CGG | 0.590931 | 8.1:-44650263 | None:intergenic |
| ACAGGCTTTAGTTTGTCCCA+AGG | 0.592504 | 8.1:+44649605 | MS.gene062524:CDS |
| CGGCCACCATCCCATAACAC+CGG | 0.593039 | 8.1:-44654500 | None:intergenic |
| CACCCGAAGGATACATGCCA+AGG | 0.593755 | 8.1:+44651474 | MS.gene062524:CDS |
| GTAGCCAAAAGGAAGTGGAA+AGG | 0.595926 | 8.1:+44650851 | MS.gene062524:intron |
| GATTTAGAAACGGATATACC+AGG | 0.600340 | 8.1:+44650301 | MS.gene062524:CDS |
| GATAGTTTGAAATGGAAGAG+TGG | 0.602677 | 8.1:-44647673 | None:intergenic |
| AGGACGAGGAGACTGGTGCT+TGG | 0.603007 | 8.1:+44649504 | MS.gene062524:intron |
| CCACCATCCCATAACACCGG+GGG | 0.607637 | 8.1:-44654497 | None:intergenic |
| GATCAATGTTTGGAGCCGCA+TGG | 0.607937 | 8.1:-44652654 | None:intergenic |
| AAGGAAAATAGTCAAGCAGA+AGG | 0.609635 | 8.1:+44650181 | MS.gene062524:CDS |
| GGAGAGAGAAACTTATGGGG+TGG | 0.609688 | 8.1:-44647808 | None:intergenic |
| GGTATGAAATTGTATGCCAA+GGG | 0.609727 | 8.1:+44651333 | MS.gene062524:CDS |
| GGGAGGGGCAACAAGAGTAG+TGG | 0.612121 | 8.1:+44652622 | MS.gene062524:CDS |
| ATTTGGAGGTCGTCTCAACT+GGG | 0.613014 | 8.1:+44652064 | MS.gene062524:CDS |
| GAAACAGAGTCTGTAGGTGG+CGG | 0.614812 | 8.1:-44651452 | None:intergenic |
| CTAGGTGGTTCATAATGACC+AGG | 0.616324 | 8.1:-44656009 | None:intergenic |
| AGAAGATTGAATCTGTTGAA+GGG | 0.618052 | 8.1:-44647863 | None:intergenic |
| ATCATAATCAAGATGCACAC+AGG | 0.619941 | 8.1:+44653771 | MS.gene062524:CDS |
| TTCGGATTCCAAAACAACCT+CGG | 0.621124 | 8.1:-44651267 | None:intergenic |
| AGCTACCGGAAGTTGAGAGA+GGG | 0.621352 | 8.1:-44650980 | None:intergenic |
| CCACGACACTGGTTCTACAC+AGG | 0.621703 | 8.1:+44654549 | MS.gene062524:CDS |
| ATAAAAGTAACGGCACGAGA+CGG | 0.624117 | 8.1:-44654520 | None:intergenic |
| TCCTTAAGATAGTTTACCAG+AGG | 0.626240 | 8.1:-44649557 | None:intergenic |
| TGGTACCATTGATGAACTGA+AGG | 0.629503 | 8.1:+44651938 | MS.gene062524:CDS |
| TCATTGGGGAGTTTCTGGTG+TGG | 0.629899 | 8.1:+44648610 | MS.gene062524:CDS |
| CTACAACATTTGGGAGCTGG+AGG | 0.633243 | 8.1:+44656071 | MS.gene062524:CDS |
| GTTGACTGGATTAGTGCTGC+CGG | 0.635518 | 8.1:+44653803 | MS.gene062524:CDS |
| AATTCATGGTTAAATAACAA+GGG | 0.635549 | 8.1:+44650942 | MS.gene062524:CDS |
| TTCACCATATGTATAACTGA+GGG | 0.635616 | 8.1:-44653744 | None:intergenic |
| TGGTTCAGAGAAAACAGTGG+TGG | 0.636081 | 8.1:-44647653 | None:intergenic |
| ACAGACTCTGTTTCACCCGA+AGG | 0.638131 | 8.1:+44651461 | MS.gene062524:CDS |
| TCGGGTGAAACAGAGTCTGT+AGG | 0.639431 | 8.1:-44651458 | None:intergenic |
| AAAGATACTATAGGCTTCAG+CGG | 0.639584 | 8.1:-44651201 | None:intergenic |
| CATTGATGAACTGAAGGATG+TGG | 0.641184 | 8.1:+44651944 | MS.gene062524:CDS |
| TTTCACCATATGTATAACTG+AGG | 0.642730 | 8.1:-44653745 | None:intergenic |
| AAATGGAAATCAGCTTGGGA+CGG | 0.642874 | 8.1:+44656042 | MS.gene062524:CDS |
| GAGCTACCGGAAGTTGAGAG+AGG | 0.643646 | 8.1:-44650981 | None:intergenic |
| ACCCGAAGGATACATGCCAA+GGG | 0.644490 | 8.1:+44651475 | MS.gene062524:CDS |
| TGTGGTGGATGAGGAGCAGG+TGG | 0.645049 | 8.1:-44650379 | None:intergenic |
| ATGTGGTCAAAGAACACTGA+CGG | 0.646715 | 8.1:-44655012 | None:intergenic |
| AACAGTGGTGGAGATGCTCA+TGG | 0.648890 | 8.1:-44647641 | None:intergenic |
| TTTGGAGAGAGAAACTTATG+GGG | 0.652371 | 8.1:-44647811 | None:intergenic |
| CCCCACGGAAAAGAAATGCA+AGG | 0.652968 | 8.1:+44654958 | MS.gene062524:CDS |
| CTCAGTTCCAGCTTTCTCCG+AGG | 0.653474 | 8.1:+44651229 | MS.gene062524:CDS |
| TCTGGTAAACTATCTTAAGG+AGG | 0.654888 | 8.1:+44649559 | MS.gene062524:CDS |
| GGAAGCTATTGTGGAATCCG+AGG | 0.655431 | 8.1:+44651250 | MS.gene062524:CDS |
| AAATCATCAACATCACCGGA+AGG | 0.660435 | 8.1:+44649300 | MS.gene062524:CDS |
| TAATGTCGGGAACAGGCACA+GGG | 0.666101 | 8.1:+44651312 | MS.gene062524:CDS |
| AAATTGGATATGATGGATGG+AGG | 0.668330 | 8.1:+44653630 | MS.gene062524:CDS |
| CTCAGTTATTGGCAACAGAG+AGG | 0.668523 | 8.1:+44651001 | MS.gene062524:CDS |
| CCTGTGTAGAACCAGTGTCG+TGG | 0.669185 | 8.1:-44654549 | None:intergenic |
| GCTTATACTCTTACTCACCC+AGG | 0.670081 | 8.1:+44654985 | MS.gene062524:CDS |
| GGTTAATGGTAGCTAATCTG+TGG | 0.673415 | 8.1:-44647702 | None:intergenic |
| GGTGAAACAGAGTCTGTAGG+TGG | 0.678034 | 8.1:-44651455 | None:intergenic |
| GGAAAATGGATTCTTCATTG+GGG | 0.684283 | 8.1:+44648596 | MS.gene062524:CDS |
| CCAGGAGGTATCATATCACG+GGG | 0.685523 | 8.1:-44649140 | None:intergenic |
| GACTGGATTAGTGCTGCCGG+TGG | 0.691174 | 8.1:+44653806 | MS.gene062524:CDS |
| TGGCGCTTGTCGGATCAGCA+GGG | 0.692297 | 8.1:+44654469 | MS.gene062524:CDS |
| GCCACCATCCCATAACACCG+GGG | 0.702449 | 8.1:-44654498 | None:intergenic |
| CACCATCCCATAACACCGGG+GGG | 0.704813 | 8.1:-44654496 | None:intergenic |
| GGAGGTATCATATCACGGGG+TGG | 0.712340 | 8.1:-44649137 | None:intergenic |
| GGTGCTTGGTATCAACACAA+AGG | 0.723807 | 8.1:+44649518 | MS.gene062524:CDS |
| GGTCATTGGAGATTTCCCCA+CGG | 0.723859 | 8.1:+44654943 | MS.gene062524:CDS |
| TAGTGGAGATAGTTTCCATG+CGG | 0.748696 | 8.1:+44652639 | MS.gene062524:CDS |
| GAGTGGTTCAGAGAAAACAG+TGG | 0.759302 | 8.1:-44647656 | None:intergenic |
| TTTATAGGAATAGATCCAGG+AGG | 0.764420 | 8.1:-44649155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 44647643 | 44656101 | 44647643 | ID=MS.gene062524 |
| chr8.1 | mRNA | 44647643 | 44656101 | 44647643 | ID=MS.gene062524.t1;Parent=MS.gene062524 |
| chr8.1 | exon | 44647643 | 44647933 | 44647643 | ID=MS.gene062524.t1.exon1;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44647643 | 44647933 | 44647643 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44648515 | 44648639 | 44648515 | ID=MS.gene062524.t1.exon2;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44648515 | 44648639 | 44648515 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44649124 | 44649178 | 44649124 | ID=MS.gene062524.t1.exon3;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44649124 | 44649178 | 44649124 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44649273 | 44649395 | 44649273 | ID=MS.gene062524.t1.exon4;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44649273 | 44649395 | 44649273 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44649506 | 44649626 | 44649506 | ID=MS.gene062524.t1.exon5;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44649506 | 44649626 | 44649506 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44650089 | 44650444 | 44650089 | ID=MS.gene062524.t1.exon6;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44650089 | 44650444 | 44650089 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44650855 | 44651519 | 44650855 | ID=MS.gene062524.t1.exon7;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44650855 | 44651519 | 44650855 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44651935 | 44652124 | 44651935 | ID=MS.gene062524.t1.exon8;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44651935 | 44652124 | 44651935 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44652622 | 44652728 | 44652622 | ID=MS.gene062524.t1.exon9;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44652622 | 44652728 | 44652622 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44653625 | 44653874 | 44653625 | ID=MS.gene062524.t1.exon10;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44653625 | 44653874 | 44653625 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44654448 | 44654570 | 44654448 | ID=MS.gene062524.t1.exon11;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44654448 | 44654570 | 44654448 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44654943 | 44655110 | 44654943 | ID=MS.gene062524.t1.exon12;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44654943 | 44655110 | 44654943 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| chr8.1 | exon | 44655937 | 44656101 | 44655937 | ID=MS.gene062524.t1.exon13;Parent=MS.gene062524.t1 |
| chr8.1 | CDS | 44655937 | 44656101 | 44655937 | ID=cds.MS.gene062524.t1;Parent=MS.gene062524.t1 |
| Gene Sequence |
| Protein sequence |
