AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056136

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056136.t1 MTR_7g451380 85.460 619 90 0 14 632 1 619 0.0 1092
MS.gene056136.t1 MTR_2g038260 73.829 619 159 3 14 631 1 617 0.0 948
MS.gene056136.t1 MTR_2g032550 72.581 620 167 3 14 631 1 619 0.0 930
MS.gene056136.t1 MTR_7g451360 75.405 618 93 2 14 631 1 559 0.0 926
MS.gene056136.t1 MTR_4g079590 73.443 610 161 1 14 623 1 609 0.0 923
MS.gene056136.t1 MTR_7g021440 71.707 615 172 2 14 628 1 613 0.0 920
MS.gene056136.t1 MTR_5g066800 71.815 628 164 3 14 630 1 626 0.0 913
MS.gene056136.t1 MTR_7g025770 71.197 618 177 1 14 631 1 617 0.0 907
MS.gene056136.t1 MTR_7g026110 70.340 617 179 3 14 630 1 613 0.0 897
MS.gene056136.t1 MTR_7g011590 71.683 618 160 3 14 631 1 603 0.0 896
MS.gene056136.t1 MTR_7g026170 70.436 619 180 2 14 631 1 617 0.0 895
MS.gene056136.t1 MTR_7g029415 70.531 621 177 4 12 631 8 623 0.0 892
MS.gene056136.t1 MTR_2g022050 71.359 618 177 0 14 631 1 618 0.0 891
MS.gene056136.t1 MTR_2g437440 70.227 618 166 1 14 631 1 600 0.0 890
MS.gene056136.t1 MTR_2g038270 68.471 628 186 4 14 631 1 626 0.0 881
MS.gene056136.t1 MTR_7g074460 71.475 617 156 3 14 630 1 597 0.0 880
MS.gene056136.t1 MTR_8g103930 68.095 630 170 6 14 630 1 612 0.0 856
MS.gene056136.t1 MTR_7g026130 68.700 623 181 5 14 628 1 617 0.0 847
MS.gene056136.t1 MTR_7g026130 48.810 84 41 1 547 628 620 703 7.59e-14 75.5
MS.gene056136.t1 MTR_4g027145 66.719 631 195 4 14 631 1 629 0.0 847
MS.gene056136.t1 MTR_7g026140 68.182 616 177 4 14 628 1 598 0.0 844
MS.gene056136.t1 MTR_2g032580 67.367 619 169 3 14 631 1 587 0.0 837
MS.gene056136.t1 MTR_7g024390 66.397 619 202 5 14 630 1 615 0.0 828
MS.gene056136.t1 MTR_1g017130 66.450 614 165 3 14 627 1 573 0.0 827
MS.gene056136.t1 MTR_7g025720 64.830 617 214 2 14 630 1 614 0.0 822
MS.gene056136.t1 MTR_4g063720 65.105 619 210 5 14 630 1 615 0.0 818
MS.gene056136.t1 MTR_4g063710 65.267 619 209 5 14 630 1 615 0.0 817
MS.gene056136.t1 MTR_7g024580 64.943 619 211 5 14 630 1 615 0.0 815
MS.gene056136.t1 MTR_7g025760 63.695 617 222 2 14 630 1 615 0.0 814
MS.gene056136.t1 MTR_7g099680 64.782 619 212 5 14 630 1 615 0.0 813
MS.gene056136.t1 MTR_7g025620 63.799 616 220 2 14 629 1 613 0.0 806
MS.gene056136.t1 MTR_8g032650 64.019 617 219 2 14 630 1 614 0.0 803
MS.gene056136.t1 MTR_7g026030 63.371 617 223 2 14 630 1 614 0.0 802
MS.gene056136.t1 MTR_7g024030 63.785 613 217 3 14 625 1 609 0.0 800
MS.gene056136.t1 MTR_7g007000 65.154 617 168 5 14 628 1 572 0.0 798
MS.gene056136.t1 MTR_7g026090 64.065 615 217 3 14 628 1 611 0.0 791
MS.gene056136.t1 MTR_7g025820 65.025 589 205 1 14 602 1 588 0.0 788
MS.gene056136.t1 MTR_7g025790 61.912 617 232 2 14 630 1 614 0.0 783
MS.gene056136.t1 MTR_4g130540 62.520 619 225 6 14 630 1 614 0.0 781
MS.gene056136.t1 MTR_7g035155 64.078 618 167 4 14 631 1 563 0.0 778
MS.gene056136.t1 MTR_7g078190 61.774 620 232 4 14 630 1 618 0.0 769
MS.gene056136.t1 MTR_7g078210 63.005 619 225 3 14 630 1 617 0.0 768
MS.gene056136.t1 MTR_7g025740 61.452 620 229 5 14 625 1 618 0.0 766
MS.gene056136.t1 MTR_7g025630 62.399 617 215 4 14 630 1 600 0.0 761
MS.gene056136.t1 MTR_1g041565 62.378 614 158 7 19 631 2 543 0.0 738
MS.gene056136.t1 MTR_7g025260 61.646 571 213 5 63 630 20 587 0.0 711
MS.gene056136.t1 MTR_6g033850 56.796 618 262 4 14 630 1 614 0.0 689
MS.gene056136.t1 MTR_6g033760 56.958 618 261 4 14 630 1 614 0.0 674
MS.gene056136.t1 MTR_6g033870 55.285 615 266 5 22 630 10 621 0.0 653
MS.gene056136.t1 MTR_6g033820 53.933 623 277 5 14 630 1 619 0.0 644
MS.gene056136.t1 MTR_4g063720 55.574 619 198 9 14 630 1 544 0.0 635
MS.gene056136.t1 MTR_2g032160 78.667 375 80 0 14 388 1 375 0.0 634
MS.gene056136.t1 MTR_2g032160 47.794 136 58 2 506 630 329 462 3.43e-25 109
MS.gene056136.t1 MTR_8g099945 54.669 589 256 8 20 604 36 617 0.0 630
MS.gene056136.t1 MTR_8g099795 54.839 589 255 8 20 604 36 617 0.0 629
MS.gene056136.t1 MTR_2g017730 57.041 561 232 4 22 575 8 566 0.0 628
MS.gene056136.t1 MTR_6g033955 53.659 615 275 5 22 630 9 619 0.0 624
MS.gene056136.t1 MTR_6g033800 54.111 523 237 3 108 630 4 523 0.0 556
MS.gene056136.t1 MTR_2g040370 67.766 394 123 2 16 409 1023 1412 2.25e-178 551
MS.gene056136.t1 MTR_2g040370 66.324 389 126 3 16 403 1407 1791 5.92e-164 513
MS.gene056136.t1 MTR_2g040370 67.766 394 123 2 16 409 1023 1412 2.84e-178 551
MS.gene056136.t1 MTR_2g040370 66.237 388 126 3 16 402 1407 1790 5.75e-163 510
MS.gene056136.t1 MTR_2g040260 65.261 403 135 3 13 414 1029 1427 1.25e-176 541
MS.gene056136.t1 MTR_2g040160 64.764 403 137 3 13 414 1100 1498 1.56e-174 536
MS.gene056136.t1 MTR_1g077230 81.915 282 51 0 14 295 1 282 2.94e-168 481
MS.gene056136.t1 MTR_2g040350 64.824 398 131 4 22 414 820 1213 3.06e-168 513
MS.gene056136.t1 MTR_2g040220 64.359 390 135 2 12 399 1008 1395 4.43e-167 517
MS.gene056136.t1 MTR_2g040220 51.020 98 39 3 460 549 1397 1493 6.04e-19 92.0
MS.gene056136.t1 MTR_2g040350 64.824 398 131 4 22 414 1038 1431 2.82e-166 513
MS.gene056136.t1 MTR_2g010020 45.515 602 298 13 2 595 37 616 1.13e-164 487
MS.gene056136.t1 MTR_2g010020 45.515 602 298 13 2 595 36 615 1.58e-164 486
MS.gene056136.t1 MTR_4g092920 45.455 583 285 14 23 595 54 613 2.46e-157 468
MS.gene056136.t1 MTR_7g026050 61.968 376 112 4 258 631 1 347 1.29e-155 452
MS.gene056136.t1 MTR_2g005690 45.617 559 282 11 23 575 72 614 3.49e-151 453
MS.gene056136.t1 MTR_2g031670 57.801 391 74 3 34 424 43 342 1.50e-144 423
MS.gene056136.t1 MTR_7g026080 76.735 245 57 0 14 258 1 245 7.05e-140 408
MS.gene056136.t1 MTR_6g034005 43.590 546 287 7 95 630 2 536 4.02e-138 420
MS.gene056136.t1 MTR_4g088515 74.597 248 45 1 22 269 276 505 2.69e-129 394
MS.gene056136.t1 MTR_4g088515 75.758 99 24 0 352 450 521 619 5.96e-40 155
MS.gene056136.t1 MTR_4g092920 43.976 498 249 12 107 595 3 479 3.46e-126 383
MS.gene056136.t1 MTR_1g077240 62.963 297 102 2 335 631 1 289 1.04e-115 347
MS.gene056136.t1 MTR_6g033810 53.035 313 98 2 113 424 22 286 1.26e-101 311
MS.gene056136.t1 MTR_6g033855 46.006 363 111 3 113 475 22 299 8.20e-95 294
MS.gene056136.t1 MTR_7g451390 77.049 183 41 1 449 631 9 190 1.41e-94 289
MS.gene056136.t1 MTR_6g478100 67.925 212 54 2 51 262 10 207 5.17e-93 290
MS.gene056136.t1 MTR_6g478100 57.895 95 40 0 529 623 208 302 1.03e-28 117
MS.gene056136.t1 MTR_5g097190 58.635 249 56 3 16 264 152 353 1.76e-89 282
MS.gene056136.t1 MTR_7g074540 64.179 201 70 2 430 630 1 199 2.13e-80 253
MS.gene056136.t1 MTR_1g116250 52.768 271 87 3 361 631 60 289 2.46e-75 243
MS.gene056136.t1 MTR_4g012050 31.356 472 304 8 23 479 4 470 1.15e-72 250
MS.gene056136.t1 MTR_5g006180 33.665 502 295 14 22 508 29 507 8.72e-71 239
MS.gene056136.t1 MTR_2g102180 31.568 472 301 9 23 479 4 468 1.12e-70 245
MS.gene056136.t1 MTR_3g051300 30.266 489 333 7 23 510 4 485 2.86e-69 240
MS.gene056136.t1 MTR_1207s0010 61.932 176 66 1 121 296 1 175 3.23e-69 223
MS.gene056136.t1 MTR_7g026180 84.034 119 19 0 91 209 23 141 5.53e-65 217
MS.gene056136.t1 MTR_7g026180 40.826 218 97 3 415 631 144 330 1.16e-39 149
MS.gene056136.t1 MTR_5g092570 30.261 499 326 9 23 510 4 491 1.41e-64 227
MS.gene056136.t1 MTR_5g090110 31.753 485 288 13 22 493 28 482 3.59e-59 207
MS.gene056136.t1 MTR_4g115780 33.779 524 306 17 22 517 140 650 2.25e-56 203
MS.gene056136.t1 MTR_5g005870 38.384 297 164 6 311 601 68 351 3.95e-55 193
MS.gene056136.t1 MTR_3g081170 27.151 523 343 11 23 512 27 544 8.73e-55 201
MS.gene056136.t1 MTR_2g040355 33.652 419 120 12 212 630 10 270 8.43e-49 173
MS.gene056136.t1 MTR_6g033910 44.541 229 64 4 87 313 19 186 1.58e-48 168
MS.gene056136.t1 MTR_4g107920 27.416 507 330 14 23 511 21 507 1.22e-44 167
MS.gene056136.t1 MTR_1g068900 54.930 142 59 2 444 582 26 165 3.24e-43 153
MS.gene056136.t1 MTR_5g005890 35.965 228 93 5 87 312 5 181 2.05e-36 135
MS.gene056136.t1 MTR_4g027235 77.333 75 17 0 14 88 1 75 7.79e-36 129
MS.gene056136.t1 MTR_4g027085 77.333 75 17 0 14 88 1 75 7.79e-36 129
MS.gene056136.t1 MTR_7g026190 60.396 101 31 2 294 394 2 93 4.99e-30 118
MS.gene056136.t1 MTR_7g026190 45.528 123 59 2 512 632 94 210 1.91e-23 99.4
MS.gene056136.t1 MTR_7g026095 61.111 90 35 0 496 585 256 345 8.21e-30 121
MS.gene056136.t1 MTR_7g026095 55.056 89 24 2 100 188 188 260 5.59e-21 95.1
MS.gene056136.t1 MTR_6g033805 64.384 73 24 1 14 86 1 71 1.44e-24 97.8
MS.gene056136.t1 MTR_2g017710 33.984 256 83 7 238 490 17 189 3.10e-24 103
MS.gene056136.t1 MTR_4g115860 40.860 93 53 2 410 501 29 120 2.74e-15 73.2
MS.gene056136.t1 MTR_7g021430 47.143 70 37 0 228 297 1 70 2.12e-14 72.8
MS.gene056136.t1 MTR_7g026160 37.500 128 42 4 311 406 72 193 4.32e-12 67.0
MS.gene056136.t1 MTR_3g114360 48.352 91 30 2 463 553 192 265 4.35e-12 67.4
MS.gene056136.t1 MTR_7g025680 78.788 33 7 0 23 55 10 42 1.23e-11 60.5
MS.gene056136.t1 MTR_6g033995 50.000 66 27 1 14 79 1 60 3.33e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056136.t1 AT3G12580 64.620 619 213 5 14 630 1 615 0.0 813
MS.gene056136.t1 AT5G02500 63.974 619 217 5 14 630 1 615 0.0 807
MS.gene056136.t1 AT3G09440 63.813 619 218 5 14 630 1 615 0.0 801
MS.gene056136.t1 AT3G09440 63.813 619 218 5 14 630 1 615 0.0 801
MS.gene056136.t1 AT3G09440 63.813 619 218 5 14 630 1 615 0.0 801
MS.gene056136.t1 AT3G09440 63.813 619 218 5 14 630 1 615 0.0 801
MS.gene056136.t1 AT5G02490 63.489 619 220 5 14 630 1 615 0.0 798
MS.gene056136.t1 AT1G56410 64.136 619 214 6 14 630 1 613 0.0 791
MS.gene056136.t1 AT1G16030 62.036 619 228 6 14 630 1 614 0.0 774
MS.gene056136.t1 AT5G28540 54.812 613 265 9 20 628 35 639 0.0 641
MS.gene056136.t1 AT5G42020 53.397 633 277 11 6 628 15 639 0.0 640
MS.gene056136.t1 AT5G42020 54.486 613 267 9 20 628 40 644 0.0 639
MS.gene056136.t1 AT1G09080 54.412 612 268 8 20 628 50 653 0.0 623
MS.gene056136.t1 AT1G09080 54.412 612 268 8 20 628 40 643 0.0 622
MS.gene056136.t1 AT5G02500 72.821 390 104 1 14 403 1 388 0.0 606
MS.gene056136.t1 AT5G42020 57.058 503 200 9 6 499 15 510 0.0 558
MS.gene056136.t1 AT5G09590 45.611 581 287 13 23 595 60 619 4.24e-155 462
MS.gene056136.t1 AT4G37910 45.743 599 296 13 5 595 37 614 3.42e-153 457
MS.gene056136.t1 AT4G37910 45.743 599 296 13 5 595 37 614 3.42e-153 457
MS.gene056136.t1 AT4G24280 44.774 574 293 12 23 590 81 636 7.22e-151 453
MS.gene056136.t1 AT5G49910 45.617 559 282 11 23 575 81 623 7.72e-149 447
MS.gene056136.t1 AT2G32120 33.462 517 311 12 22 524 30 527 2.12e-75 251
MS.gene056136.t1 AT2G32120 33.462 517 311 12 22 524 30 527 2.12e-75 251
MS.gene056136.t1 AT1G79930 32.000 475 303 8 23 482 4 473 6.25e-74 253
MS.gene056136.t1 AT1G79920 32.211 475 302 8 23 482 4 473 1.17e-73 251
MS.gene056136.t1 AT1G79920 32.211 475 302 8 23 482 4 473 1.34e-73 251
MS.gene056136.t1 AT1G79920 32.211 475 302 8 23 482 4 473 1.34e-73 251
MS.gene056136.t1 AT1G79920 32.211 475 302 8 23 482 4 473 1.34e-73 251
MS.gene056136.t1 AT1G79930 32.000 475 303 8 23 482 4 473 2.55e-73 252
MS.gene056136.t1 AT1G11660 33.416 404 261 6 23 423 4 402 1.24e-68 238
MS.gene056136.t1 AT1G11660 33.416 404 261 6 23 423 4 402 1.24e-68 238
MS.gene056136.t1 AT1G11660 33.416 404 261 6 23 423 4 402 1.24e-68 238
MS.gene056136.t1 AT1G11660 33.967 368 237 5 59 423 1 365 3.52e-61 217
MS.gene056136.t1 AT4G16660 27.186 526 346 12 19 512 47 567 3.21e-57 208
MS.gene056136.t1 AT4G16660 27.186 526 346 12 19 512 23 543 3.98e-57 207

Find 129 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGTTCTTTCACTCTTTC+TGG 0.008941 7.3:-54587907 MS.gene056136:CDS
TCAACACCATTTGGTGTTTC+TGG 0.103705 7.3:-54589824 MS.gene056136:CDS
CTCAACCTCCTTAGGGCTTT+TGG 0.111076 7.3:+54588501 None:intergenic
TGAGGTCGATGCTTTGTTTC+AGG 0.236745 7.3:-54588424 MS.gene056136:CDS
TCCTTGTTGGTGGATCTTCT+AGG 0.269778 7.3:-54588266 MS.gene056136:CDS
TGCAATAGTTGCTGCACTTT+AGG 0.278166 7.3:+54588240 None:intergenic
GCAAGTGACAATCATCTTCT+TGG 0.280969 7.3:-54587925 MS.gene056136:CDS
ACAGATGCCAAGAGGCTAAT+TGG 0.308993 7.3:-54589077 MS.gene056136:intron
CCTGATGAGGCAATTGCTTA+TGG 0.315040 7.3:-54588177 MS.gene056136:CDS
ACGCAGTTCTCAACCTCCTT+AGG 0.321307 7.3:+54588493 None:intergenic
AGTATGTATGAGCGCATTAT+AGG 0.322524 7.3:-54587469 MS.gene056136:CDS
ACATCAATCAACACCAAGTT+TGG 0.324598 7.3:+54588108 None:intergenic
GGAGATTGCAGAGGCATATC+TGG 0.336106 7.3:-54588892 MS.gene056136:CDS
TGTGTCTCTTCTTACAATTA+AGG 0.339763 7.3:-54588652 MS.gene056136:CDS
AACCTAGAAAACACTGTCTT+TGG 0.346525 7.3:-54589438 MS.gene056136:intron
AAACATGATTCAACACCATT+TGG 0.352346 7.3:-54589833 None:intergenic
ATAGATGCTGGTGTCATTGC+TGG 0.352626 7.3:-54588801 MS.gene056136:CDS
AAATGAAAGTGATGTTCTTC+AGG 0.352646 7.3:-54587512 MS.gene056136:CDS
GTTGATGATGTTGTCCTTGT+TGG 0.355323 7.3:-54588279 MS.gene056136:CDS
CCATAAGCAATTGCCTCATC+AGG 0.361201 7.3:+54588177 None:intergenic
TAAAGTGCAGCAACTATTGC+AGG 0.380400 7.3:-54588238 MS.gene056136:CDS
TGCTGAGGAAATCTCGTCTA+TGG 0.383573 7.3:-54588931 MS.gene056136:CDS
AGCAATGACACCAGCATCTA+TGG 0.384494 7.3:+54588803 None:intergenic
TGCTTATGGCGCAGCTGTCC+AGG 0.385814 7.3:-54588163 MS.gene056136:CDS
TGCTTTGATGTCAATCAAAA+TGG 0.391036 7.3:-54587844 MS.gene056136:CDS
CGCAGTTCTCAACCTCCTTA+GGG 0.394218 7.3:+54588494 None:intergenic
CTGCGTGCGAGAAGGCAAAA+AGG 0.396025 7.3:-54588476 MS.gene056136:CDS
CTCCTGTCCCTTGTACTTGA+GGG 0.399012 7.3:+54588965 None:intergenic
CTGGTGGAAACACTCACCTT+GGG 0.401415 7.3:-54588605 MS.gene056136:CDS
TCTTCTTACAATTAAGGATA+AGG 0.404002 7.3:-54588646 MS.gene056136:CDS
AATTGTTTCGTCTTCTTGAC+AGG 0.409676 7.3:+54588012 None:intergenic
GCTCAAGAGGAACGGTTGAT+TGG 0.410428 7.3:-54589489 MS.gene056136:CDS
TCTCCATGCACTCATTAAAA+AGG 0.412944 7.3:+54588346 None:intergenic
GATGTTGCACCACTGTCTCT+TGG 0.420444 7.3:-54588090 MS.gene056136:CDS
GGATAAGGTCTTCGAAGTTA+AGG 0.423231 7.3:-54588631 MS.gene056136:CDS
GGATGGCCACGAGCAGCTGC+AGG 0.428028 7.3:+54587877 None:intergenic
TGTCTTGATTAATGTTTATG+AGG 0.429671 7.3:-54587962 MS.gene056136:CDS
TGGCCATTCAAAGTCATTGC+GGG 0.433971 7.3:-54589011 MS.gene056136:CDS
AATCTCTCGTGCAAAGTTTG+AGG 0.447581 7.3:-54588382 MS.gene056136:CDS
ATCAAGCAAATTTGCGGCCA+CGG 0.447678 7.3:+54587549 None:intergenic
CTTCCTACCAATTAGCCTCT+TGG 0.451481 7.3:+54589070 None:intergenic
AGATGATTGTCACTTGCTCT+TGG 0.452190 7.3:+54587931 None:intergenic
GAACTGACTGTGATGGTAAA+CGG 0.453960 7.3:-54588713 MS.gene056136:CDS
CACCTCGAATGTTCCAAACT+TGG 0.456873 7.3:-54588121 MS.gene056136:CDS
ACACCCGCAATGACTTTGAA+TGG 0.458605 7.3:+54589008 None:intergenic
GACATTATTCACAATGATCA+AGG 0.459526 7.3:-54589543 MS.gene056136:CDS
CTATTGCAGGACTTCTTCTA+CGG 0.461154 7.3:-54588225 MS.gene056136:CDS
GAGGTCGATGCTTTGTTTCA+GGG 0.461220 7.3:-54588423 MS.gene056136:CDS
CTTTGTTGCTTTCGCTCAAG+AGG 0.462984 7.3:-54589502 MS.gene056136:CDS
GATGATGTTGTCCTTGTTGG+TGG 0.468097 7.3:-54588276 MS.gene056136:CDS
TTTGTCTTTGACCTTGGTGG+TGG 0.469354 7.3:-54588684 MS.gene056136:CDS
ACATCAAAGCATACATCAAA+AGG 0.475211 7.3:+54587856 None:intergenic
TGAGAATCGTTGAAATAAGC+AGG 0.477964 7.3:+54588837 None:intergenic
TCTCCTGTCCCTTGTACTTG+AGG 0.482957 7.3:+54588964 None:intergenic
GAGGCTTACCGTATCAATGA+TGG 0.483149 7.3:-54587706 MS.gene056136:CDS
TTGCACCACTGTCTCTTGGT+TGG 0.483274 7.3:-54588086 MS.gene056136:CDS
ACTGCTGCAGCTATTGCATA+TGG 0.483888 7.3:-54588747 MS.gene056136:CDS
ATTCACATCAAGCAAATTTG+CGG 0.488444 7.3:+54587543 None:intergenic
GGCTGAAGTCATGAATGCTC+TGG 0.489484 7.3:-54587668 MS.gene056136:CDS
TTGTCTTTGACCTTGGTGGT+GGG 0.491381 7.3:-54588683 MS.gene056136:CDS
GTCCAGGCTGCTTTGTTGAG+TGG 0.494089 7.3:-54588147 MS.gene056136:CDS
AAAGTTTGAGGAGATCAATA+TGG 0.505480 7.3:-54588370 MS.gene056136:CDS
TTTCGTCTTCTTGACAGGAA+TGG 0.511698 7.3:+54588017 None:intergenic
TGATGGGAAATTCTTGAGAA+AGG 0.520859 7.3:-54587689 MS.gene056136:CDS
GTCTTCGAAGTTAAGGCCAC+TGG 0.522470 7.3:-54588624 MS.gene056136:CDS
CATTATAGGCAAGTCCTGCT+AGG 0.523311 7.3:-54587455 None:intergenic
AGAATTTCCCATCATTGATA+CGG 0.526952 7.3:+54587698 None:intergenic
GAGAAATGTGTTGAAGAAGA+AGG 0.531211 7.3:-54587626 MS.gene056136:CDS
CACCAAGTTTGGAACATTCG+AGG 0.533491 7.3:+54588119 None:intergenic
TTCCCTCAAGTACAAGGGAC+AGG 0.533865 7.3:-54588967 MS.gene056136:CDS
GATGATTTCCCTCAAGTACA+AGG 0.534895 7.3:-54588973 MS.gene056136:CDS
AAGCTCGTTCTTACTGCCAG+TGG 0.534933 7.3:+54587792 None:intergenic
ACTGGTGGAAACACTCACCT+TGG 0.538678 7.3:-54588606 MS.gene056136:CDS
AAGGTGAGTGTTTCCACCAG+TGG 0.547001 7.3:+54588608 None:intergenic
AGAAAAGCCACCATAGATGC+TGG 0.548590 7.3:-54588813 MS.gene056136:CDS
TGCTGTTGTCACCAATGTTG+AGG 0.549124 7.3:-54588442 MS.gene056136:CDS
AAAGATGAAGGATATGCCAT+TGG 0.553215 7.3:-54589627 MS.gene056136:CDS
AGAGGCATATCTGGAATCAC+TGG 0.554460 7.3:-54588883 MS.gene056136:CDS
TATGCAATAGCTGCAGCAGT+TGG 0.558562 7.3:+54588750 None:intergenic
GTCTTGATTAATGTTTATGA+GGG 0.559792 7.3:-54587961 MS.gene056136:CDS
TTGCTTTCGCTCAAGAGGAA+CGG 0.559950 7.3:-54589497 MS.gene056136:CDS
AAGATTGATTGAAGAAGCTG+AGG 0.562890 7.3:-54587725 MS.gene056136:CDS
TGAGCGAAAGCAACAAAGGA+AGG 0.574959 7.3:+54589507 None:intergenic
GATGGCCACGAGCAGCTGCA+GGG 0.575202 7.3:+54587878 None:intergenic
TTCGAAGTTAAGGCCACTGG+TGG 0.576585 7.3:-54588621 MS.gene056136:CDS
TATGGTACTCACAAAGATGC+GGG 0.579590 7.3:-54588913 MS.gene056136:CDS
CAAAGCATCGACCTCAACAT+TGG 0.580273 7.3:+54588431 None:intergenic
TACTCTCAAGCTCATTCAAG+TGG 0.582438 7.3:+54587488 None:intergenic
CTCTTGAGCGAAAGCAACAA+AGG 0.582705 7.3:+54589503 None:intergenic
ATGGCCACGAGCAGCTGCAG+GGG 0.583174 7.3:+54587879 None:intergenic
TCTGCTATGGACAAATCCAC+TGG 0.583359 7.3:-54587808 MS.gene056136:CDS
TGCAGGCCAGAAACACCAAA+TGG 0.583490 7.3:+54589818 None:intergenic
CAATAATCAATGACAAAGGA+AGG 0.585916 7.3:-54587768 MS.gene056136:CDS
AGGCTTACCGTATCAATGAT+GGG 0.587696 7.3:-54587705 MS.gene056136:CDS
ACAGGAATGGAAGTGTTCCT+CGG 0.591496 7.3:+54588030 None:intergenic
GTTGAGAACTGCGTGCGAGA+AGG 0.591918 7.3:-54588484 MS.gene056136:CDS
TTGGGAACCCAAAAGCCCTA+AGG 0.593146 7.3:-54588509 MS.gene056136:CDS
CATAAGCAATTGCCTCATCA+GGG 0.597298 7.3:+54588178 None:intergenic
TTCCACTCAACAAAGCAGCC+TGG 0.598415 7.3:+54588145 None:intergenic
TGGTGGAAACACTCACCTTG+GGG 0.601557 7.3:-54588604 MS.gene056136:CDS
TATGCCATTGGAATAGACCT+TGG 0.603545 7.3:-54589615 MS.gene056136:CDS
TATTGCAGGACTTCTTCTAC+GGG 0.603960 7.3:-54588224 MS.gene056136:CDS
ATGCCAAGAGGCTAATTGGT+AGG 0.605854 7.3:-54589073 MS.gene056136:CDS
GCAGGACTTCTTCTACGGGA+AGG 0.609093 7.3:-54588220 MS.gene056136:CDS
CAAAGCATACATCAAAAGGA+TGG 0.615551 7.3:+54587860 None:intergenic
TGGCCACGAGCAGCTGCAGG+GGG 0.617063 7.3:+54587880 None:intergenic
AGTACCAAGGTCTATTCCAA+TGG 0.620372 7.3:+54589611 None:intergenic
TAGGAAGTTTACTGATCCTG+TGG 0.621004 7.3:-54589054 MS.gene056136:CDS
CAAGAGCATCAACCCTGATG+AGG 0.621114 7.3:-54588190 MS.gene056136:CDS
TTGTACTTGAGGGAAATCAT+CGG 0.621700 7.3:+54588975 None:intergenic
AGAGGACTTTGATAATAGAG+TGG 0.625955 7.3:-54588580 MS.gene056136:CDS
GAAAAGAGAACTGACTGTGA+TGG 0.633914 7.3:-54588720 MS.gene056136:CDS
CTATGGTACTCACAAAGATG+CGG 0.635011 7.3:-54588914 MS.gene056136:CDS
GGAACCCAAAAGCCCTAAGG+AGG 0.640087 7.3:-54588506 MS.gene056136:CDS
CTTACAATAATCAATGACAA+AGG 0.652145 7.3:-54587772 MS.gene056136:CDS
GTGGCCATTCAAAGTCATTG+CGG 0.653981 7.3:-54589012 MS.gene056136:CDS
CGTACTCTTGTGTTGCTGTG+TGG 0.655627 7.3:-54589587 MS.gene056136:CDS
GATCAATACTGCAATTGCCG+TGG 0.662061 7.3:-54587566 MS.gene056136:CDS
TCCTAGAAGATCCACCAACA+AGG 0.665374 7.3:+54588265 None:intergenic
TCATGACTGTGGTGATTCCG+AGG 0.667674 7.3:-54588047 MS.gene056136:CDS
AATGACACCAGCATCTATGG+TGG 0.667765 7.3:+54588806 None:intergenic
GGTGGAAACACTCACCTTGG+GGG 0.675471 7.3:-54588603 MS.gene056136:CDS
AAAGATGCGGGAGATTGCAG+AGG 0.680528 7.3:-54588901 MS.gene056136:CDS
CACAAGAGTACGTAGTACCA+AGG 0.684270 7.3:+54589598 None:intergenic
ATGATTTCCCTCAAGTACAA+GGG 0.686901 7.3:-54588972 MS.gene056136:CDS
AACTTCCAACCAAGAGACAG+TGG 0.687062 7.3:+54588081 None:intergenic
CATCAAAAGTCCCACCACCA+AGG 0.703356 7.3:+54588673 None:intergenic
AATACATGATGTCATGACTG+TGG 0.754095 7.3:-54588058 MS.gene056136:CDS
AGTGCATGGAGACTGTTGAG+AGG 0.754321 7.3:-54588335 MS.gene056136:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAGGTTTATTATTTG+TGG - chr7.3:54587518-54587537 MS.gene056136:CDS 15.0%
!!! AAAAAAATTTAGATCCATTT+TGG - chr7.3:54588013-54588032 MS.gene056136:CDS 15.0%
!! AAAATACATGAAGATCTATT+TGG + chr7.3:54588130-54588149 None:intergenic 20.0%
!! GCTATATAATTAAGAAAGAA+AGG - chr7.3:54587920-54587939 MS.gene056136:CDS 20.0%
!! TTTGATCTATGATATAATGT+TGG - chr7.3:54587971-54587990 MS.gene056136:CDS 20.0%
!!! TAGATCTTCATGTATTTTAT+TGG - chr7.3:54588132-54588151 MS.gene056136:CDS 20.0%
!!! TATTTGAGACTTATAAGATT+AGG - chr7.3:54588081-54588100 MS.gene056136:CDS 20.0%
!!! TTAAGTTGTTTATGACATTA+AGG - chr7.3:54587572-54587591 MS.gene056136:CDS 20.0%
! AAAAATGTCCCAAAAAATGA+TGG + chr7.3:54588040-54588059 None:intergenic 25.0%
! AAGAAAAATTTGGACATCAT+TGG - chr7.3:54588757-54588776 MS.gene056136:CDS 25.0%
! AGAAAAATTTGGACATCATT+GGG - chr7.3:54588758-54588777 MS.gene056136:CDS 25.0%
! CTTACAATAATCAATGACAA+AGG - chr7.3:54589513-54589532 MS.gene056136:CDS 25.0%
! GATCAAAAGGAAGAAAAATT+TGG - chr7.3:54588747-54588766 MS.gene056136:CDS 25.0%
! GTCTTGATTAATGTTTATGA+GGG - chr7.3:54589324-54589343 MS.gene056136:intron 25.0%
! GTTTATTATTTGTGGTAGAA+AGG - chr7.3:54587526-54587545 MS.gene056136:CDS 25.0%
! TACAAAAAGACATAATGTTG+TGG - chr7.3:54588254-54588273 MS.gene056136:CDS 25.0%
! TAGAAAGGTTTATGATTCAA+AGG - chr7.3:54587541-54587560 MS.gene056136:CDS 25.0%
! TCTTCTTACAATTAAGGATA+AGG - chr7.3:54588639-54588658 MS.gene056136:CDS 25.0%
! TGTCTTGATTAATGTTTATG+AGG - chr7.3:54589323-54589342 MS.gene056136:intron 25.0%
!!! AATATTTTTGTCTTTGACCT+TGG - chr7.3:54588595-54588614 MS.gene056136:CDS 25.0%
!!! ATTTTATTGGTGACTAGATT+AGG - chr7.3:54588145-54588164 MS.gene056136:CDS 25.0%
!!! ATTTTGGTCCATCATTTTTT+GGG - chr7.3:54588029-54588048 MS.gene056136:CDS 25.0%
AAAGTTTGAGGAGATCAATA+TGG - chr7.3:54588915-54588934 MS.gene056136:CDS 30.0%
AAATGAAAGTGATGTTCTTC+AGG - chr7.3:54589773-54589792 MS.gene056136:intron 30.0%
ACATCAAAGCATACATCAAA+AGG + chr7.3:54589432-54589451 None:intergenic 30.0%
AGAATTTCCCATCATTGATA+CGG + chr7.3:54589590-54589609 None:intergenic 30.0%
ATTATGGCGAAAAAAGATGA+AGG - chr7.3:54587646-54587665 MS.gene056136:CDS 30.0%
ATTCACATCAAGCAAATTTG+CGG + chr7.3:54589745-54589764 None:intergenic 30.0%
CAATAATCAATGACAAAGGA+AGG - chr7.3:54589517-54589536 MS.gene056136:CDS 30.0%
GACATTATTCACAATGATCA+AGG - chr7.3:54587742-54587761 MS.gene056136:CDS 30.0%
TCTTGCAATGAAAACGAATA+AGG + chr7.3:54587627-54587646 None:intergenic 30.0%
TGCTTTGATGTCAATCAAAA+TGG - chr7.3:54589441-54589460 MS.gene056136:CDS 30.0%
TGTGTCTCTTCTTACAATTA+AGG - chr7.3:54588633-54588652 MS.gene056136:CDS 30.0%
! ATTATGTCTTTTTGTACCAC+AGG + chr7.3:54588250-54588269 None:intergenic 30.0%
! ATTTTGTTGAGGAGATCAAA+AGG - chr7.3:54588734-54588753 MS.gene056136:CDS 30.0%
! TCGTTTTCATTGCAAGATTA+TGG - chr7.3:54587630-54587649 MS.gene056136:CDS 30.0%
! TTAATTTTACAGATGCCAAG+AGG - chr7.3:54588200-54588219 MS.gene056136:CDS 30.0%
!! CAAAAAATGATGGACCAAAA+TGG + chr7.3:54588030-54588049 None:intergenic 30.0%
!! CATTTTGGTCCATCATTTTT+TGG - chr7.3:54588028-54588047 MS.gene056136:CDS 30.0%
!!! TATTTTGACAGTTTCTGCTA+TGG - chr7.3:54589464-54589483 MS.gene056136:CDS 30.0%
AAAGATGAAGGATATGCCAT+TGG - chr7.3:54587658-54587677 MS.gene056136:CDS 35.0%
AACCTAGAAAACACTGTCTT+TGG - chr7.3:54587847-54587866 MS.gene056136:CDS 35.0%
AAGATTGATTGAAGAAGCTG+AGG - chr7.3:54589560-54589579 MS.gene056136:CDS 35.0%
AATACATGATGTCATGACTG+TGG - chr7.3:54589227-54589246 MS.gene056136:intron 35.0%
AATTGTTTCGTCTTCTTGAC+AGG + chr7.3:54589276-54589295 None:intergenic 35.0%
ACATCAATCAACACCAAGTT+TGG + chr7.3:54589180-54589199 None:intergenic 35.0%
ACCATTGCTTGAGCTTAAAA+AGG - chr7.3:54587504-54587523 MS.gene056136:CDS 35.0%
AGTATGTATGAGCGCATTAT+AGG - chr7.3:54589816-54589835 MS.gene056136:CDS 35.0%
ATGATTTCCCTCAAGTACAA+GGG - chr7.3:54588313-54588332 MS.gene056136:CDS 35.0%
CAAAGCATACATCAAAAGGA+TGG + chr7.3:54589428-54589447 None:intergenic 35.0%
GAGAAATGTGTTGAAGAAGA+AGG - chr7.3:54589659-54589678 MS.gene056136:intron 35.0%
GGTTGAAAAACTTACTTTGC+AGG + chr7.3:54587487-54587506 None:intergenic 35.0%
TCTCCATGCACTCATTAAAA+AGG + chr7.3:54588942-54588961 None:intergenic 35.0%
TGAGAATCGTTGAAATAAGC+AGG + chr7.3:54588451-54588470 None:intergenic 35.0%
TGATGGGAAATTCTTGAGAA+AGG - chr7.3:54589596-54589615 MS.gene056136:CDS 35.0%
TTGTACTTGAGGGAAATCAT+CGG + chr7.3:54588313-54588332 None:intergenic 35.0%
! AGAGGACTTTGATAATAGAG+TGG - chr7.3:54588705-54588724 MS.gene056136:CDS 35.0%
! AGTGGTGAACTATTTTGTTG+AGG - chr7.3:54588723-54588742 MS.gene056136:CDS 35.0%
! ATTTTTGTCTTTGACCTTGG+TGG - chr7.3:54588598-54588617 MS.gene056136:CDS 35.0%
! GTGTTTTACTGATGCTAAGA+TGG - chr7.3:54588972-54588991 MS.gene056136:CDS 35.0%
! TACCAAAGACAGTGTTTTCT+AGG + chr7.3:54587852-54587871 None:intergenic 35.0%
!! ACCTTTTTAAGCTCAAGCAA+TGG + chr7.3:54587508-54587527 None:intergenic 35.0%
AATCTCTCGTGCAAAGTTTG+AGG - chr7.3:54588903-54588922 MS.gene056136:CDS 40.0%
AGGCTTACCGTATCAATGAT+GGG - chr7.3:54589580-54589599 MS.gene056136:CDS 40.0%
AGTACCAAGGTCTATTCCAA+TGG + chr7.3:54587677-54587696 None:intergenic 40.0%
CATAAGCAATTGCCTCATCA+GGG + chr7.3:54589110-54589129 None:intergenic 40.0%
CTATGGTACTCACAAAGATG+CGG - chr7.3:54588371-54588390 MS.gene056136:CDS 40.0%
CTATTGCAGGACTTCTTCTA+CGG - chr7.3:54589060-54589079 MS.gene056136:CDS 40.0%
GAAAAGAGAACTGACTGTGA+TGG - chr7.3:54588565-54588584 MS.gene056136:CDS 40.0%
GAACTGACTGTGATGGTAAA+CGG - chr7.3:54588572-54588591 MS.gene056136:CDS 40.0%
GATGATTTCCCTCAAGTACA+AGG - chr7.3:54588312-54588331 MS.gene056136:CDS 40.0%
GCAAGTGACAATCATCTTCT+TGG - chr7.3:54589360-54589379 MS.gene056136:intron 40.0%
GGATAAGGTCTTCGAAGTTA+AGG - chr7.3:54588654-54588673 MS.gene056136:CDS 40.0%
TAAAGTGCAGCAACTATTGC+AGG - chr7.3:54589047-54589066 MS.gene056136:CDS 40.0%
TACTCTCAAGCTCATTCAAG+TGG + chr7.3:54589800-54589819 None:intergenic 40.0%
TAGGAAGTTTACTGATCCTG+TGG - chr7.3:54588231-54588250 MS.gene056136:CDS 40.0%
TATGCCATTGGAATAGACCT+TGG - chr7.3:54587670-54587689 MS.gene056136:CDS 40.0%
TATGGTACTCACAAAGATGC+GGG - chr7.3:54588372-54588391 MS.gene056136:CDS 40.0%
TATTGCAGGACTTCTTCTAC+GGG - chr7.3:54589061-54589080 MS.gene056136:CDS 40.0%
TGCAATAGTTGCTGCACTTT+AGG + chr7.3:54589048-54589067 None:intergenic 40.0%
TTTCGTCTTCTTGACAGGAA+TGG + chr7.3:54589271-54589290 None:intergenic 40.0%
! AGATGATTGTCACTTGCTCT+TGG + chr7.3:54589357-54589376 None:intergenic 40.0%
! CACAGTCAGTTCTCTTTTCA+AGG + chr7.3:54588564-54588583 None:intergenic 40.0%
! CTTGGTTCTTTCACTCTTTC+TGG - chr7.3:54589378-54589397 MS.gene056136:intron 40.0%
! GGACCTTTTTAATGAGTGCA+TGG - chr7.3:54588936-54588955 MS.gene056136:CDS 40.0%
!! GTTGATGATGTTGTCCTTGT+TGG - chr7.3:54589006-54589025 MS.gene056136:CDS 40.0%
!! TCAACACCATTTGGTGTTTC+TGG - chr7.3:54587461-54587480 MS.gene056136:CDS 40.0%
!! TGCTGGTCTCAATGTTTTGA+AGG - chr7.3:54588501-54588520 MS.gene056136:CDS 40.0%
AACTTCCAACCAAGAGACAG+TGG + chr7.3:54589207-54589226 None:intergenic 45.0%
AATGACACCAGCATCTATGG+TGG + chr7.3:54588482-54588501 None:intergenic 45.0%
ACACCCGCAATGACTTTGAA+TGG + chr7.3:54588280-54588299 None:intergenic 45.0%
ACAGATGCCAAGAGGCTAAT+TGG - chr7.3:54588208-54588227 MS.gene056136:CDS 45.0%
ACTGCTGCAGCTATTGCATA+TGG - chr7.3:54588538-54588557 MS.gene056136:CDS 45.0%
AGAAAAGCCACCATAGATGC+TGG - chr7.3:54588472-54588491 MS.gene056136:CDS 45.0%
AGCAATGACACCAGCATCTA+TGG + chr7.3:54588485-54588504 None:intergenic 45.0%
ATCAAGCAAATTTGCGGCCA+CGG + chr7.3:54589739-54589758 None:intergenic 45.0%
ATGCCAAGAGGCTAATTGGT+AGG - chr7.3:54588212-54588231 MS.gene056136:CDS 45.0%
CACCTCGAATGTTCCAAACT+TGG - chr7.3:54589164-54589183 MS.gene056136:intron 45.0%
CCATAAGCAATTGCCTCATC+AGG + chr7.3:54589111-54589130 None:intergenic 45.0%
CCTGATGAGGCAATTGCTTA+TGG - chr7.3:54589108-54589127 MS.gene056136:intron 45.0%
CTCTTGAGCGAAAGCAACAA+AGG + chr7.3:54587785-54587804 None:intergenic 45.0%
GAGGCTTACCGTATCAATGA+TGG - chr7.3:54589579-54589598 MS.gene056136:CDS 45.0%
GATCAATACTGCAATTGCCG+TGG - chr7.3:54589719-54589738 MS.gene056136:intron 45.0%
GATGATGTTGTCCTTGTTGG+TGG - chr7.3:54589009-54589028 MS.gene056136:CDS 45.0%
GTGGCCATTCAAAGTCATTG+CGG - chr7.3:54588273-54588292 MS.gene056136:CDS 45.0%
TATGCAATAGCTGCAGCAGT+TGG + chr7.3:54588538-54588557 None:intergenic 45.0%
TCCTAGAAGATCCACCAACA+AGG + chr7.3:54589023-54589042 None:intergenic 45.0%
TCTGCTATGGACAAATCCAC+TGG - chr7.3:54589477-54589496 MS.gene056136:CDS 45.0%
TGAGCGAAAGCAACAAAGGA+AGG + chr7.3:54587781-54587800 None:intergenic 45.0%
TGCTGAGGAAATCTCGTCTA+TGG - chr7.3:54588354-54588373 MS.gene056136:CDS 45.0%
TGCTGTTGTCACCAATGTTG+AGG - chr7.3:54588843-54588862 MS.gene056136:CDS 45.0%
TGGCCATTCAAAGTCATTGC+GGG - chr7.3:54588274-54588293 MS.gene056136:CDS 45.0%
TTGCTTTCGCTCAAGAGGAA+CGG - chr7.3:54587788-54587807 MS.gene056136:CDS 45.0%
TTTGTCTTTGACCTTGGTGG+TGG - chr7.3:54588601-54588620 MS.gene056136:CDS 45.0%
! AGAGGCATATCTGGAATCAC+TGG - chr7.3:54588402-54588421 MS.gene056136:CDS 45.0%
! CACAAGAGTACGTAGTACCA+AGG + chr7.3:54587690-54587709 None:intergenic 45.0%
! CACCAAGTTTGGAACATTCG+AGG + chr7.3:54589169-54589188 None:intergenic 45.0%
! CTTCCTACCAATTAGCCTCT+TGG + chr7.3:54588218-54588237 None:intergenic 45.0%
! TCAACCTCCTTAGGGCTTTT+GGG + chr7.3:54588786-54588805 None:intergenic 45.0%
! TCCTTGTTGGTGGATCTTCT+AGG - chr7.3:54589019-54589038 MS.gene056136:CDS 45.0%
! TTGTCTTTGACCTTGGTGGT+GGG - chr7.3:54588602-54588621 MS.gene056136:CDS 45.0%
!! ACAGGAATGGAAGTGTTCCT+CGG + chr7.3:54589258-54589277 None:intergenic 45.0%
!! ATAGATGCTGGTGTCATTGC+TGG - chr7.3:54588484-54588503 MS.gene056136:CDS 45.0%
!! CAAAGCATCGACCTCAACAT+TGG + chr7.3:54588857-54588876 None:intergenic 45.0%
!! CTTTGTTGCTTTCGCTCAAG+AGG - chr7.3:54587783-54587802 MS.gene056136:CDS 45.0%
!! GAGGTCGATGCTTTGTTTCA+GGG - chr7.3:54588862-54588881 MS.gene056136:CDS 45.0%
!! TGAGGTCGATGCTTTGTTTC+AGG - chr7.3:54588861-54588880 MS.gene056136:CDS 45.0%
AAAGATGCGGGAGATTGCAG+AGG - chr7.3:54588384-54588403 MS.gene056136:CDS 50.0%
AAGCTCGTTCTTACTGCCAG+TGG + chr7.3:54589496-54589515 None:intergenic 50.0%
AAGGTGAGTGTTTCCACCAG+TGG + chr7.3:54588680-54588699 None:intergenic 50.0%
ACGCAGTTCTCAACCTCCTT+AGG + chr7.3:54588795-54588814 None:intergenic 50.0%
ACTGGTGGAAACACTCACCT+TGG - chr7.3:54588679-54588698 MS.gene056136:CDS 50.0%
AGTGCATGGAGACTGTTGAG+AGG - chr7.3:54588950-54588969 MS.gene056136:CDS 50.0%
CATCAAAAGTCCCACCACCA+AGG + chr7.3:54588615-54588634 None:intergenic 50.0%
CGCAGTTCTCAACCTCCTTA+GGG + chr7.3:54588794-54588813 None:intergenic 50.0%
CTCCTGTCCCTTGTACTTGA+GGG + chr7.3:54588323-54588342 None:intergenic 50.0%
CTGGTGGAAACACTCACCTT+GGG - chr7.3:54588680-54588699 MS.gene056136:CDS 50.0%
GATGTTGCACCACTGTCTCT+TGG - chr7.3:54589195-54589214 MS.gene056136:intron 50.0%
GCTCAAGAGGAACGGTTGAT+TGG - chr7.3:54587796-54587815 MS.gene056136:CDS 50.0%
GGCTGAAGTCATGAATGCTC+TGG - chr7.3:54589617-54589636 MS.gene056136:CDS 50.0%
GTCTTCGAAGTTAAGGCCAC+TGG - chr7.3:54588661-54588680 MS.gene056136:CDS 50.0%
TATCAAAGTCCTCTCCCCCA+AGG + chr7.3:54588699-54588718 None:intergenic 50.0%
TCATGACTGTGGTGATTCCG+AGG - chr7.3:54589238-54589257 MS.gene056136:intron 50.0%
TCTCCTGTCCCTTGTACTTG+AGG + chr7.3:54588324-54588343 None:intergenic 50.0%
TGCAGGCCAGAAACACCAAA+TGG + chr7.3:54587470-54587489 None:intergenic 50.0%
TGGTGGAAACACTCACCTTG+GGG - chr7.3:54588681-54588700 MS.gene056136:CDS 50.0%
TTCCACTCAACAAAGCAGCC+TGG + chr7.3:54589143-54589162 None:intergenic 50.0%
TTCCCTCAAGTACAAGGGAC+AGG - chr7.3:54588318-54588337 MS.gene056136:CDS 50.0%
TTCGAAGTTAAGGCCACTGG+TGG - chr7.3:54588664-54588683 MS.gene056136:CDS 50.0%
TTGCACCACTGTCTCTTGGT+TGG - chr7.3:54589199-54589218 MS.gene056136:intron 50.0%
TTGGGAACCCAAAAGCCCTA+AGG - chr7.3:54588776-54588795 MS.gene056136:CDS 50.0%
! CGTACTCTTGTGTTGCTGTG+TGG - chr7.3:54587698-54587717 MS.gene056136:CDS 50.0%
! CTCAACCTCCTTAGGGCTTT+TGG + chr7.3:54588787-54588806 None:intergenic 50.0%
! GGAGAAGCTCTTTTGTGCTG+AGG - chr7.3:54588339-54588358 MS.gene056136:CDS 50.0%
! GGAGATTGCAGAGGCATATC+TGG - chr7.3:54588393-54588412 MS.gene056136:CDS 50.0%
!! CAAGAGCATCAACCCTGATG+AGG - chr7.3:54589095-54589114 MS.gene056136:intron 50.0%
AAACACTCACCTTGGGGGAG+AGG - chr7.3:54588687-54588706 MS.gene056136:CDS 55.0%
CTGCGTGCGAGAAGGCAAAA+AGG - chr7.3:54588809-54588828 MS.gene056136:CDS 55.0%
GCAGGACTTCTTCTACGGGA+AGG - chr7.3:54589065-54589084 MS.gene056136:CDS 55.0%
GGAACCCAAAAGCCCTAAGG+AGG - chr7.3:54588779-54588798 MS.gene056136:CDS 55.0%
GGTGGAAACACTCACCTTGG+GGG - chr7.3:54588682-54588701 MS.gene056136:CDS 55.0%
GTTGAGAACTGCGTGCGAGA+AGG - chr7.3:54588801-54588820 MS.gene056136:CDS 55.0%
! GTCCAGGCTGCTTTGTTGAG+TGG - chr7.3:54589138-54589157 MS.gene056136:intron 55.0%
TGCTTATGGCGCAGCTGTCC+AGG - chr7.3:54589122-54589141 MS.gene056136:intron 60.0%
ATGGCCACGAGCAGCTGCAG+GGG + chr7.3:54589409-54589428 None:intergenic 65.0%
GATGGCCACGAGCAGCTGCA+GGG + chr7.3:54589410-54589429 None:intergenic 65.0%
CACGAGCAGCTGCAGGGGGT+AGG + chr7.3:54589404-54589423 None:intergenic 70.0%
CTACCCCCTGCAGCTGCTCG+TGG - chr7.3:54589402-54589421 MS.gene056136:intron 70.0%
GGATGGCCACGAGCAGCTGC+AGG + chr7.3:54589411-54589430 None:intergenic 70.0%
TGGCCACGAGCAGCTGCAGG+GGG + chr7.3:54589408-54589427 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 54587456 54589851 54587456 ID=MS.gene056136
chr7.3 mRNA 54587456 54589851 54587456 ID=MS.gene056136.t1;Parent=MS.gene056136
chr7.3 exon 54589816 54589851 54589816 ID=MS.gene056136.t1.exon1;Parent=MS.gene056136.t1
chr7.3 CDS 54589816 54589851 54589816 ID=cds.MS.gene056136.t1;Parent=MS.gene056136.t1
chr7.3 exon 54589439 54589661 54589439 ID=MS.gene056136.t1.exon2;Parent=MS.gene056136.t1
chr7.3 CDS 54589439 54589661 54589439 ID=cds.MS.gene056136.t1;Parent=MS.gene056136.t1
chr7.3 exon 54587456 54589095 54587456 ID=MS.gene056136.t1.exon3;Parent=MS.gene056136.t1
chr7.3 CDS 54587456 54589095 54587456 ID=cds.MS.gene056136.t1;Parent=MS.gene056136.t1
Gene Sequence

>MS.gene056136

ATGATTCAACACCATTTGGTGTTTCTGGCCTGCAAAGTAAGTTTTTCAACCATTGCTTGAGCTTAAAAAGGTTTATTATTTGTGGTAGAAAGGTTTATGATTCAAAGGTTTGAGCTTTAAGTTGTTTATGACATTAAGGATATTGATGAATTTAAAGTTATTTTTTTACCTTATTCGTTTTCATTGCAAGATTATGGCGAAAAAAGATGAAGGATATGCCATTGGAATAGACCTTGGTACTACGTACTCTTGTGTTGCTGTGTGGCAAGAACAACATAGTAGAGTTGACATTATTCACAATGATCAAGGTAACAAAACTACTCCTTCCTTTGTTGCTTTCGCTCAAGAGGAACGGTTGATTGGTAATGCTGCTAAGAATCAAGCTGCTACAAACCTAGAAAACACTGTCTTTGGTAAGTTCTATTATTATATCTACTCTTTTATACATTTGATTATTGAGTAAAGCTATATAATTAAGAAAGAAAGGATGATAAAAGAAAATAAAAGAAAAACTATTTGATCTATGATATAATGTTGGCTAAATCAGTCTTTTTTATAAAAAAATTTAGATCCATTTTGGTCCATCATTTTTTGGGACATTTTTTCATAAGATTATCTTGATTGATATTTGAGACTTATAAGATTAGGTTCTTACTTTTGACTTATCAAAACCAAATAGATCTTCATGTATTTTATTGGTGACTAGATTAGGTGTTCACTCATAGAACAAATGATAAATAATAATTAATTTTACAGATGCCAAGAGGCTAATTGGTAGGAAGTTTACTGATCCTGTGGTACAAAAAGACATAATGTTGTGGCCATTCAAAGTCATTGCGGGTGTGAATGACAAACCGATGATTTCCCTCAAGTACAAGGGACAGGAGAAGCTCTTTTGTGCTGAGGAAATCTCGTCTATGGTACTCACAAAGATGCGGGAGATTGCAGAGGCATATCTGGAATCACTGGTTAAGAATGCTGTCATTACTGTGCCTGCTTATTTCAACGATTCTCAAAGAAAAGCCACCATAGATGCTGGTGTCATTGCTGGTCTCAATGTTTTGAAGGTAATCAATGAACCAACTGCTGCAGCTATTGCATATGGCCTTGAAAAGAGAACTGACTGTGATGGTAAACGGAATATTTTTGTCTTTGACCTTGGTGGTGGGACTTTTGATGTGTCTCTTCTTACAATTAAGGATAAGGTCTTCGAAGTTAAGGCCACTGGTGGAAACACTCACCTTGGGGGAGAGGACTTTGATAATAGAGTGGTGAACTATTTTGTTGAGGAGATCAAAAGGAAGAAAAATTTGGACATCATTGGGAACCCAAAAGCCCTAAGGAGGTTGAGAACTGCGTGCGAGAAGGCAAAAAGGACATTATCTTTTGCTGTTGTCACCAATGTTGAGGTCGATGCTTTGTTTCAGGGTGTTGATTTTTCTTCATCAATCTCTCGTGCAAAGTTTGAGGAGATCAATATGGACCTTTTTAATGAGTGCATGGAGACTGTTGAGAGGTGTTTTACTGATGCTAAGATGGACAAGAATAGTGTTGATGATGTTGTCCTTGTTGGTGGATCTTCTAGGATTCCTAAAGTGCAGCAACTATTGCAGGACTTCTTCTACGGGAAGGAATTATGCAAGAGCATCAACCCTGATGAGGCAATTGCTTATGGCGCAGCTGTCCAGGCTGCTTTGTTGAGTGGAAGCACCTCGAATGTTCCAAACTTGGTGTTGATTGATGTTGCACCACTGTCTCTTGGTTGGAAGTTAATACATGATGTCATGACTGTGGTGATTCCGAGGAACACTTCCATTCCTGTCAAGAAGACGAAACAATTTGTTACTACTAAAGATTATCAAACGAGTGTCTTGATTAATGTTTATGAGGGTGAGAGACCAAGAGCAAGTGACAATCATCTTCTTGGTTCTTTCACTCTTTCTGGCCTACCCCCTGCAGCTGCTCGTGGCCATCCTTTTGATGTATGCTTTGATGTCAATCAAAATGGTATTTTGACAGTTTCTGCTATGGACAAATCCACTGGCAGTAAGAACGAGCTTACAATAATCAATGACAAAGGAAGGTTGTCGACTGAAGAAATTAAAAGATTGATTGAAGAAGCTGAGGCTTACCGTATCAATGATGGGAAATTCTTGAGAAAGGCTGAAGTCATGAATGCTCTGGATCACTGTATTTACAAATTGAGAAATGTGTTGAAGAAGAAGGATATTAATCTAAAGCTCTCTTCAGAAGAAAACAAGAAGATCAATACTGCAATTGCCGTGGCCGCAAATTTGCTTGATGTGAATGATCGTCAAAATGAAAGTGATGTTCTTCAGGACCACTTGAATGAGCTTGAGAGTATGTATGAGCGCATTATAGGCAAGTCCTGCTAG
Protein sequence

>MS.gene056136.t1

MIQHHLVFLACKIMAKKDEGYAIGIDLGTTYSCVAVWQEQHSRVDIIHNDQGNKTTPSFVAFAQEERLIGNAAKNQAATNLENTVFDAKRLIGRKFTDPVVQKDIMLWPFKVIAGVNDKPMISLKYKGQEKLFCAEEISSMVLTKMREIAEAYLESLVKNAVITVPAYFNDSQRKATIDAGVIAGLNVLKVINEPTAAAIAYGLEKRTDCDGKRNIFVFDLGGGTFDVSLLTIKDKVFEVKATGGNTHLGGEDFDNRVVNYFVEEIKRKKNLDIIGNPKALRRLRTACEKAKRTLSFAVVTNVEVDALFQGVDFSSSISRAKFEEINMDLFNECMETVERCFTDAKMDKNSVDDVVLVGGSSRIPKVQQLLQDFFYGKELCKSINPDEAIAYGAAVQAALLSGSTSNVPNLVLIDVAPLSLGWKLIHDVMTVVIPRNTSIPVKKTKQFVTTKDYQTSVLINVYEGERPRASDNHLLGSFTLSGLPPAAARGHPFDVCFDVNQNGILTVSAMDKSTGSKNELTIINDKGRLSTEEIKRLIEEAEAYRINDGKFLRKAEVMNALDHCIYKLRNVLKKKDINLKLSSEENKKINTAIAVAANLLDVNDRQNESDVLQDHLNELESMYERIIGKSC