AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene23105


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23105.t1 MTR_7g111260 98.214 224 4 0 1 224 1 224 1.25e-156 446
MS.gene23105.t1 MTR_1g085090 82.143 224 40 0 1 224 1 224 2.40e-133 388
MS.gene23105.t1 MTR_4g123537 54.327 208 95 0 3 210 25 232 1.21e-66 216
MS.gene23105.t1 MTR_3g100980 47.222 216 106 1 17 224 14 229 7.04e-64 207
MS.gene23105.t1 MTR_3g100980 47.222 216 106 1 17 224 14 229 1.62e-63 207
MS.gene23105.t1 MTR_8g087810 39.720 214 123 2 17 224 19 232 1.69e-44 157
MS.gene23105.t1 MTR_4g107670 37.811 201 117 3 17 212 22 219 4.37e-42 150
MS.gene23105.t1 MTR_2g017750 37.089 213 128 1 17 223 32 244 5.83e-42 150
MS.gene23105.t1 MTR_3g112460 35.238 210 132 2 17 223 21 229 1.80e-41 148
MS.gene23105.t1 MTR_5g038380 40.385 208 115 3 15 213 18 225 2.87e-41 148
MS.gene23105.t1 MTR_8g087780 39.437 213 123 2 17 223 19 231 1.15e-40 146
MS.gene23105.t1 MTR_3g112470 35.238 210 132 2 17 223 21 229 2.54e-40 145
MS.gene23105.t1 MTR_8g469310 40.704 199 115 1 19 214 26 224 1.52e-38 140
MS.gene23105.t1 MTR_3g112450 33.673 196 126 2 17 208 21 216 1.73e-37 137
MS.gene23105.t1 MTR_2g005130 34.928 209 130 3 17 221 38 244 1.58e-35 132
MS.gene23105.t1 MTR_7g051880 32.367 207 134 2 17 223 23 223 3.44e-35 130
MS.gene23105.t1 MTR_7g052600 34.146 205 129 2 17 221 23 221 3.96e-35 130
MS.gene23105.t1 MTR_7g051830 32.683 205 132 2 17 221 23 221 3.15e-34 128
MS.gene23105.t1 MTR_5g055000 36.667 210 124 4 17 220 16 222 2.02e-33 126
MS.gene23105.t1 MTR_4g015080 32.683 205 136 2 17 220 32 235 4.56e-33 125
MS.gene23105.t1 MTR_4g101380 36.041 197 121 3 17 208 25 221 2.35e-32 123
MS.gene23105.t1 MTR_1g116930 32.895 228 146 3 1 221 1 228 2.49e-31 120
MS.gene23105.t1 MTR_5g012270 31.905 210 134 4 17 220 27 233 2.55e-31 120
MS.gene23105.t1 MTR_3g462710 31.100 209 137 2 17 221 22 227 3.99e-30 117
MS.gene23105.t1 MTR_7g067010 30.233 215 142 2 4 214 9 219 8.52e-30 116
MS.gene23105.t1 MTR_3g072300 33.673 196 127 2 19 212 24 218 4.11e-29 114
MS.gene23105.t1 MTR_5g012290 32.836 201 125 4 21 214 29 226 4.52e-29 114
MS.gene23105.t1 MTR_1g042310 26.457 223 159 1 4 221 11 233 5.31e-28 111
MS.gene23105.t1 MTR_7g098040 29.224 219 143 2 4 213 19 234 2.47e-27 109
MS.gene23105.t1 MTR_7g006540 34.146 205 126 2 19 214 63 267 4.37e-27 108
MS.gene23105.t1 MTR_7g098200 30.876 217 142 3 4 213 14 229 5.32e-27 108
MS.gene23105.t1 MTR_7g098200 30.876 217 142 3 4 213 14 229 5.76e-27 108
MS.gene23105.t1 MTR_7g098150 28.700 223 147 2 4 217 18 237 5.97e-27 107
MS.gene23105.t1 MTR_7g098090 29.439 214 139 2 4 208 18 228 6.97e-27 108
MS.gene23105.t1 MTR_7g010820 30.288 208 141 1 17 220 24 231 2.97e-26 106
MS.gene23105.t1 MTR_7g098180 27.727 220 146 2 4 213 16 232 9.02e-26 105
MS.gene23105.t1 MTR_1g041835 27.354 223 157 1 4 221 12 234 1.01e-25 104
MS.gene23105.t1 MTR_4g019580 32.821 195 126 3 21 212 38 230 4.86e-25 102
MS.gene23105.t1 MTR_1g041875 25.561 223 161 2 4 221 14 236 7.44e-25 102
MS.gene23105.t1 MTR_7g098160 27.570 214 143 2 4 208 18 228 9.44e-25 102
MS.gene23105.t1 MTR_3g069500 30.151 199 135 2 17 213 33 229 9.53e-25 102
MS.gene23105.t1 MTR_7g065080 31.383 188 122 2 21 204 33 217 1.83e-24 101
MS.gene23105.t1 MTR_1g075440 28.448 232 151 4 1 220 6 234 2.32e-24 100
MS.gene23105.t1 MTR_4g098800 31.222 221 134 4 4 209 13 230 2.52e-24 100
MS.gene23105.t1 MTR_4g107610 34.300 207 121 7 18 214 30 231 2.92e-24 100
MS.gene23105.t1 MTR_4g098800 31.364 220 133 4 4 208 78 294 2.94e-24 100
MS.gene23105.t1 MTR_1g041815 26.577 222 158 1 4 220 12 233 3.28e-24 100
MS.gene23105.t1 MTR_1g041885 29.282 181 123 2 46 221 9 189 8.37e-24 99.0
MS.gene23105.t1 MTR_2g101610 31.754 211 138 4 3 208 11 220 8.58e-24 99.4
MS.gene23105.t1 MTR_7g088825 30.374 214 140 4 17 224 20 230 9.24e-24 99.4
MS.gene23105.t1 MTR_7g098220 27.679 224 156 2 4 221 15 238 1.41e-23 98.6
MS.gene23105.t1 MTR_5g014150 28.755 233 151 3 4 224 21 250 1.73e-23 98.6
MS.gene23105.t1 MTR_4g033395 29.268 205 138 2 17 221 30 227 1.86e-23 98.2
MS.gene23105.t1 MTR_7g005930 30.732 205 135 3 18 217 34 236 2.16e-23 98.2
MS.gene23105.t1 MTR_7g098230 29.353 201 133 4 20 213 28 226 2.25e-23 98.2
MS.gene23105.t1 MTR_1g042310 25.654 191 137 1 36 221 6 196 3.82e-23 97.4
MS.gene23105.t1 MTR_2g101590 30.660 212 141 4 7 213 14 224 4.55e-23 97.1
MS.gene23105.t1 MTR_1g042310 26.519 181 128 1 46 221 9 189 9.81e-23 96.3
MS.gene23105.t1 MTR_4g107510 29.187 209 144 2 3 207 20 228 1.94e-22 95.5
MS.gene23105.t1 MTR_4g114340 34.466 206 130 3 17 217 22 227 5.20e-22 94.0
MS.gene23105.t1 MTR_3g069440 29.524 210 144 2 17 224 31 238 5.92e-22 94.0
MS.gene23105.t1 MTR_7g088820 28.700 223 146 5 1 213 3 222 7.71e-22 93.6
MS.gene23105.t1 MTR_4g107580 26.761 213 148 3 2 210 11 219 9.04e-22 93.6
MS.gene23105.t1 MTR_4g033325 30.769 208 137 2 17 224 29 229 1.16e-21 93.2
MS.gene23105.t1 MTR_7g013270 29.952 207 136 4 18 217 89 293 1.82e-21 92.4
MS.gene23105.t1 MTR_7g064780 30.000 200 135 5 17 212 24 222 2.06e-21 92.4
MS.gene23105.t1 MTR_4g033375 29.808 208 139 2 17 224 30 230 2.58e-21 92.0
MS.gene23105.t1 MTR_8g103233 31.336 217 133 8 1 210 5 212 3.52e-21 91.7
MS.gene23105.t1 MTR_4g033315 29.808 208 139 2 17 224 29 229 4.58e-21 91.3
MS.gene23105.t1 MTR_4g033310 29.808 208 139 2 17 224 29 229 4.58e-21 91.3
MS.gene23105.t1 MTR_5g038060 29.126 206 137 3 17 214 29 233 6.91e-21 90.9
MS.gene23105.t1 MTR_7g098220 28.125 192 132 2 36 221 3 194 6.95e-21 90.9
MS.gene23105.t1 MTR_4g011280 29.082 196 133 4 18 208 31 225 1.04e-20 90.5
MS.gene23105.t1 MTR_3g069420 27.536 207 144 2 21 224 36 239 1.24e-20 90.1
MS.gene23105.t1 MTR_0294s0020 28.846 208 141 1 17 224 29 229 1.35e-20 90.1
MS.gene23105.t1 MTR_4g033330 30.097 206 137 2 19 224 31 229 5.46e-20 88.2
MS.gene23105.t1 MTR_4g107530 27.835 194 135 2 22 210 36 229 1.12e-19 87.4
MS.gene23105.t1 MTR_7g088790 29.487 234 146 6 1 224 13 237 1.28e-19 87.0
MS.gene23105.t1 MTR_4g024930 33.523 176 99 2 17 181 34 202 3.01e-19 86.3
MS.gene23105.t1 MTR_4g033310 33.129 163 102 2 17 179 29 184 3.30e-19 85.9
MS.gene23105.t1 MTR_3g014790 26.316 209 139 2 4 212 2 195 1.30e-18 84.3
MS.gene23105.t1 MTR_2g101640 29.146 199 135 4 15 208 19 216 1.36e-18 84.3
MS.gene23105.t1 MTR_7g064800 28.218 202 138 4 17 212 24 224 1.66e-18 84.0
MS.gene23105.t1 MTR_1g026750 29.911 224 145 7 7 224 6 223 5.56e-18 82.4
MS.gene23105.t1 MTR_1g026740 30.047 213 133 8 4 208 2 206 6.53e-18 82.0
MS.gene23105.t1 MTR_2g101650 26.131 199 138 4 17 208 22 218 1.26e-17 81.3
MS.gene23105.t1 MTR_1g057460 29.146 199 134 5 11 208 36 228 3.25e-17 80.1
MS.gene23105.t1 MTR_8g038880 26.341 205 135 3 1 204 1 190 3.46e-17 80.1
MS.gene23105.t1 MTR_7g088820 30.189 159 108 2 58 213 2 160 1.40e-16 78.2
MS.gene23105.t1 MTR_3g005010 29.293 198 129 2 17 214 28 214 4.06e-16 77.0
MS.gene23105.t1 MTR_1g009200 26.267 217 143 5 17 220 25 237 5.46e-16 76.6
MS.gene23105.t1 MTR_8g469480 29.508 183 119 3 39 214 61 240 7.03e-16 76.3
MS.gene23105.t1 MTR_5g085850 29.353 201 135 2 17 210 28 228 1.07e-15 75.9
MS.gene23105.t1 MTR_2g101560 27.619 210 148 3 3 208 11 220 1.49e-15 75.5
MS.gene23105.t1 MTR_1g026770 29.293 198 126 6 18 208 14 204 3.75e-15 74.3
MS.gene23105.t1 MTR_3g462710 33.884 121 73 2 105 221 1 118 2.77e-14 71.6
MS.gene23105.t1 MTR_0236s0050 30.675 163 106 5 47 208 1 157 5.74e-14 70.5
MS.gene23105.t1 MTR_7g065080 30.827 133 85 2 76 204 1 130 6.51e-14 70.5
MS.gene23105.t1 MTR_4g033325 36.000 100 64 0 125 224 6 105 2.36e-13 68.6
MS.gene23105.t1 MTR_4g033325 36.000 100 64 0 125 224 32 131 2.54e-13 68.6
MS.gene23105.t1 MTR_7g098200 33.621 116 69 3 105 213 1 115 4.08e-13 68.2
MS.gene23105.t1 MTR_5g038190 24.510 204 135 3 18 208 23 220 6.12e-13 67.8
MS.gene23105.t1 MTR_1g057460 30.061 163 107 5 47 208 1 157 1.35e-12 66.6
MS.gene23105.t1 MTR_8g469470 21.101 218 165 2 3 213 16 233 2.44e-12 65.9
MS.gene23105.t1 MTR_4g033385 34.737 95 62 0 127 221 32 126 5.95e-12 64.7
MS.gene23105.t1 MTR_2g093640 25.248 202 131 7 19 210 21 212 3.89e-11 62.4
MS.gene23105.t1 MTR_4g124330 34.653 101 45 2 122 222 9 88 9.20e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene23105.t1 AT1G69850 38.288 222 129 2 1 214 1 222 3.89e-42 150
MS.gene23105.t1 AT3G25280 35.965 228 124 5 3 224 4 215 8.35e-42 148
MS.gene23105.t1 AT1G59740 34.821 224 141 2 4 222 26 249 1.27e-38 140
MS.gene23105.t1 AT3G25260 35.135 222 128 5 4 217 2 215 8.83e-37 135
MS.gene23105.t1 AT1G27040 36.493 211 123 2 15 214 13 223 2.07e-35 132
MS.gene23105.t1 AT1G27040 36.493 211 123 2 15 214 17 227 2.36e-35 131
MS.gene23105.t1 AT3G54140 31.944 216 146 1 4 218 9 224 3.71e-34 128
MS.gene23105.t1 AT3G54140 31.944 216 146 1 4 218 9 224 3.71e-34 128
MS.gene23105.t1 AT5G62730 34.234 222 123 4 5 214 30 240 3.37e-33 125
MS.gene23105.t1 AT1G27040 38.378 185 109 1 35 214 11 195 2.14e-32 123
MS.gene23105.t1 AT5G62730 34.737 190 113 1 25 214 3 181 3.65e-31 119
MS.gene23105.t1 AT1G12110 34.286 210 129 4 17 217 25 234 6.67e-31 119
MS.gene23105.t1 AT5G01180 29.412 204 144 0 17 220 23 226 6.93e-31 119
MS.gene23105.t1 AT5G01180 29.412 204 144 0 17 220 23 226 6.93e-31 119
MS.gene23105.t1 AT5G01180 29.412 204 144 0 17 220 23 226 6.93e-31 119
MS.gene23105.t1 AT2G02020 29.680 219 141 2 8 213 20 238 5.44e-30 116
MS.gene23105.t1 AT2G02020 29.680 219 141 2 8 213 20 238 6.74e-30 116
MS.gene23105.t1 AT1G62200 31.220 205 130 2 17 213 50 251 4.88e-29 114
MS.gene23105.t1 AT1G62200 31.220 205 130 2 17 213 50 251 5.62e-29 114
MS.gene23105.t1 AT1G62200 31.220 205 130 2 17 213 64 265 6.29e-29 114
MS.gene23105.t1 AT1G33440 37.619 210 122 3 19 222 38 244 8.76e-29 113
MS.gene23105.t1 AT1G69870 33.663 202 127 2 17 212 49 249 1.28e-28 113
MS.gene23105.t1 AT1G68570 36.937 222 128 5 8 220 12 230 1.34e-28 113
MS.gene23105.t1 AT2G02040 30.653 199 136 1 17 213 39 237 4.56e-28 111
MS.gene23105.t1 AT5G13400 33.654 208 129 2 19 217 64 271 7.33e-28 110
MS.gene23105.t1 AT1G72140 31.959 194 132 0 17 210 32 225 1.33e-27 110
MS.gene23105.t1 AT2G40460 32.243 214 138 3 4 213 9 219 1.90e-27 109
MS.gene23105.t1 AT2G37900 29.612 206 141 2 17 220 36 239 2.61e-27 109
MS.gene23105.t1 AT3G53960 30.732 205 138 2 17 219 35 237 4.51e-27 108
MS.gene23105.t1 AT5G28470 32.864 213 137 3 17 224 15 226 3.80e-26 105
MS.gene23105.t1 AT5G28470 32.864 213 137 3 17 224 15 226 3.93e-26 105
MS.gene23105.t1 AT2G26690 32.850 207 136 1 17 220 22 228 1.32e-25 104
MS.gene23105.t1 AT1G68570 36.735 196 115 4 31 220 8 200 4.29e-25 102
MS.gene23105.t1 AT5G46040 27.919 197 137 2 17 208 25 221 8.30e-25 102
MS.gene23105.t1 AT2G26690 34.359 195 122 2 29 220 4 195 1.50e-24 101
MS.gene23105.t1 AT4G21680 31.472 197 131 2 17 209 26 222 1.58e-24 101
MS.gene23105.t1 AT1G22540 30.180 222 141 3 3 214 8 225 5.59e-24 99.8
MS.gene23105.t1 AT1G32450 29.327 208 143 1 17 220 35 242 1.77e-23 98.6
MS.gene23105.t1 AT2G26690 35.196 179 113 1 45 220 5 183 2.06e-23 98.2
MS.gene23105.t1 AT3G16180 28.182 220 149 4 2 213 5 223 9.93e-23 96.3
MS.gene23105.t1 AT1G27080 33.645 214 128 4 7 212 4 211 4.49e-22 94.4
MS.gene23105.t1 AT1G52190 28.436 211 143 4 6 208 7 217 9.79e-22 93.6
MS.gene23105.t1 AT1G72130 28.788 198 135 2 17 214 23 214 3.29e-21 91.7
MS.gene23105.t1 AT1G72125 32.367 207 131 3 21 224 31 231 3.61e-21 91.7
MS.gene23105.t1 AT3G47960 29.493 217 136 5 1 210 49 255 3.92e-21 91.7
MS.gene23105.t1 AT1G72120 30.392 204 139 1 17 220 27 227 5.12e-21 91.3
MS.gene23105.t1 AT5G46050 26.108 203 145 2 20 217 28 230 5.91e-21 91.3
MS.gene23105.t1 AT2G37900 33.553 152 97 2 71 220 11 160 6.71e-21 90.9
MS.gene23105.t1 AT1G22570 30.102 196 135 1 17 210 28 223 1.50e-20 90.1
MS.gene23105.t1 AT5G62680 29.817 218 138 5 6 213 30 242 2.52e-20 89.4
MS.gene23105.t1 AT5G19640 29.208 202 134 5 20 217 60 256 6.84e-20 88.2
MS.gene23105.t1 AT1G69860 26.606 218 152 3 3 213 2 218 7.62e-20 87.8
MS.gene23105.t1 AT1G18880 27.149 221 148 5 6 220 12 225 6.28e-19 85.1
MS.gene23105.t1 AT3G21670 29.577 213 143 2 5 210 15 227 4.40e-18 82.8
MS.gene23105.t1 AT3G45690 26.522 230 147 8 1 220 1 218 8.83e-18 81.6
MS.gene23105.t1 AT1G22570 31.737 167 112 1 46 210 20 186 1.62e-17 81.3
MS.gene23105.t1 AT3G45680 26.906 223 142 6 8 220 9 220 3.36e-17 80.1
MS.gene23105.t1 AT1G22550 28.643 199 137 2 17 210 28 226 3.78e-17 80.1
MS.gene23105.t1 AT3G54450 25.490 204 140 2 17 220 10 201 1.06e-16 78.6
MS.gene23105.t1 AT1G27080 34.104 173 102 3 48 212 1 169 1.48e-16 78.2
MS.gene23105.t1 AT5G14940 29.187 209 127 4 17 212 5 205 1.80e-16 78.2
MS.gene23105.t1 AT3G45660 25.221 226 148 6 5 220 7 221 1.06e-14 72.8
MS.gene23105.t1 AT3G45660 25.221 226 148 6 5 220 7 221 1.06e-14 72.8
MS.gene23105.t1 AT3G45660 25.221 226 148 6 5 220 28 242 1.28e-14 72.8
MS.gene23105.t1 AT3G45710 24.348 230 155 7 1 220 1 221 1.14e-13 69.7
MS.gene23105.t1 AT5G11570 28.788 198 125 6 20 208 14 204 1.71e-13 69.3
MS.gene23105.t1 AT3G45650 27.136 199 130 6 17 208 20 210 3.56e-13 68.6
MS.gene23105.t1 AT3G45650 27.136 199 130 6 17 208 20 210 4.21e-13 68.2
MS.gene23105.t1 AT3G01350 26.214 206 132 3 17 210 5 202 1.11e-12 67.0
MS.gene23105.t1 AT3G45700 26.455 189 121 7 39 220 39 216 1.14e-11 63.9
MS.gene23105.t1 AT3G45720 24.413 213 138 8 19 220 19 219 2.00e-11 63.2

Find 45 sgRNAs with CRISPR-Local

Find 64 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTTTCTTGCTTTCCCTTGT+TGG 0.265399 7.1:+4199541 MS.gene23105:CDS
ATAACTATAGCTTCTTCTAT+TGG 0.302689 7.1:+4200088 MS.gene23105:CDS
CTTGATTTCCCACATGCATT+TGG 0.310576 7.1:-4199812 None:intergenic
CAGGTGTTACTGGTGTTGTT+TGG 0.320066 7.1:+4200026 MS.gene23105:CDS
AGAGAAAGAAAGGTGGATTC+AGG 0.324478 7.1:+4199282 MS.gene23105:CDS
TCAACACTTGGAGCAATTAC+AGG 0.328425 7.1:+4200007 MS.gene23105:CDS
GGAGCAATTACAGGTGTTAC+TGG 0.364098 7.1:+4200016 MS.gene23105:CDS
GTTGTCAGCATTGGACAATA+TGG 0.372340 7.1:+4199417 MS.gene23105:CDS
AGGTGTTACTGGTGTTGTTT+GGG 0.383327 7.1:+4200027 MS.gene23105:CDS
CAATACTCTCACAAACTTCA+TGG 0.386414 7.1:+4199513 MS.gene23105:CDS
ACATTGTTGGCATTGGGAAT+AGG 0.397725 7.1:+4199878 MS.gene23105:CDS
GGCTTTGTCACACTTGCTCT+TGG 0.401789 7.1:+4200109 MS.gene23105:CDS
TACACAAAGAGCTTGGCATT+GGG 0.407882 7.1:+4200054 MS.gene23105:CDS
ATCACTGACATTGTTGGCAT+TGG 0.413030 7.1:+4199871 MS.gene23105:CDS
AGTTGTGTGAAAGGTGGAAT+AGG 0.413397 7.1:+4199833 MS.gene23105:CDS
TTCTTGCTTTCCCTTGTTGG+TGG 0.429198 7.1:+4199544 MS.gene23105:CDS
AGAGGATCTATGACTGCATT+TGG 0.431468 7.1:+4199908 MS.gene23105:CDS
AACTCAAGCTTCTCACTGAA+TGG 0.442712 7.1:+4199258 MS.gene23105:CDS
TTACACATCACTGACATTGT+TGG 0.446683 7.1:+4199865 MS.gene23105:CDS
TCACTGACATTGTTGGCATT+GGG 0.450521 7.1:+4199872 MS.gene23105:CDS
ATTGGACAATATGGGATTTG+TGG 0.458958 7.1:+4199426 MS.gene23105:CDS
TTGTCAGCATTGGACAATAT+GGG 0.463205 7.1:+4199418 MS.gene23105:CDS
CATGAAGTTTGTGAGAGTAT+TGG 0.463423 7.1:-4199512 None:intergenic
GTACACAAAGAGCTTGGCAT+TGG 0.480459 7.1:+4200053 MS.gene23105:CDS
GTGAGAGTATTGGCAGAACT+TGG 0.496595 7.1:-4199502 None:intergenic
TGATGTAGTGTTGTCAGCAT+TGG 0.504753 7.1:+4199408 MS.gene23105:intron
ACTGAATGGAAGAGAAAGAA+AGG 0.522276 7.1:+4199272 MS.gene23105:CDS
TTGGGAATAGGAGGGGTAAG+AGG 0.528722 7.1:+4199890 MS.gene23105:CDS
ACATTTGTAGGCTTTGGCAT+TGG 0.530795 7.1:+4199757 MS.gene23105:intron
TTGTTGGCATTGGGAATAGG+AGG 0.534414 7.1:+4199881 MS.gene23105:CDS
GAGAAAGAAAGGTGGATTCA+GGG 0.534643 7.1:+4199283 MS.gene23105:CDS
AATACTCTCACAAACTTCAT+GGG 0.541870 7.1:+4199514 MS.gene23105:CDS
TATGGGATTTGTGGCAAACA+TGG 0.549979 7.1:+4199435 MS.gene23105:CDS
GGGTTAGTACACAAAGAGCT+TGG 0.556525 7.1:+4200047 MS.gene23105:CDS
TGAGATGAAGCCACCAACAA+GGG 0.570574 7.1:-4199554 None:intergenic
CATTTACATCCAAATGCATG+TGG 0.585392 7.1:+4199803 MS.gene23105:CDS
TATAATACAGGCAGATCAAG+AGG 0.592502 7.1:+4199226 MS.gene23105:intron
CTGAGATGAAGCCACCAACA+AGG 0.596410 7.1:-4199555 None:intergenic
ACACAAAGAGCTTGGCATTG+GGG 0.612368 7.1:+4200055 MS.gene23105:CDS
GTTGGCATTGGGAATAGGAG+GGG 0.621646 7.1:+4199883 MS.gene23105:CDS
TGTTGGCATTGGGAATAGGA+GGG 0.626274 7.1:+4199882 MS.gene23105:CDS
GAATGGAAGAGAAAGAAAGG+TGG 0.633493 7.1:+4199275 MS.gene23105:CDS
AAATCAAGTTGTGTGAAAGG+TGG 0.639042 7.1:+4199827 MS.gene23105:CDS
GGGAAATCAAGTTGTGTGAA+AGG 0.644229 7.1:+4199824 MS.gene23105:CDS
ATTTACATCCAAATGCATGT+GGG 0.671883 7.1:+4199804 MS.gene23105:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGCTTAGTTTTATATTTTTA+TGG + chr7.1:4199460-4199479 MS.gene23105:CDS 15.0%
!!! TTTTTTGATATAACATTTGT+AGG + chr7.1:4199745-4199764 MS.gene23105:intron 15.0%
!! AAAAAAACTAAACTCTTTGT+TGG + chr7.1:4199335-4199354 MS.gene23105:intron 20.0%
!! AGTTTCAAATCTTATAATAC+AGG + chr7.1:4199214-4199233 MS.gene23105:intron 20.0%
!!! TAGTATATTGTTTAGAATCT+CGG - chr7.1:4199701-4199720 None:intergenic 20.0%
! AAACTCATCAAATATATGCA+TGG - chr7.1:4199199-4199218 None:intergenic 25.0%
! ATAACTATAGCTTCTTCTAT+TGG + chr7.1:4200088-4200107 MS.gene23105:CDS 25.0%
! GTTAACATGATCAATAGTTT+AGG - chr7.1:4199643-4199662 None:intergenic 25.0%
!! TTGGATCTTTTTCTTCAAAT+TGG - chr7.1:4199940-4199959 None:intergenic 25.0%
AATACTCTCACAAACTTCAT+GGG + chr7.1:4199514-4199533 MS.gene23105:CDS 30.0%
ATTTACATCCAAATGCATGT+GGG + chr7.1:4199804-4199823 MS.gene23105:CDS 30.0%
CAAATATATGCATGGAAACA+AGG - chr7.1:4199191-4199210 None:intergenic 30.0%
GATATAACATTTGTAGGCTT+TGG + chr7.1:4199751-4199770 MS.gene23105:intron 30.0%
TGAAGAAAAAGATCCAAATG+AGG + chr7.1:4199943-4199962 MS.gene23105:CDS 30.0%
!! AGGGCTTCTATGTTTATTTT+TGG + chr7.1:4199302-4199321 MS.gene23105:CDS 30.0%
!!! CACTTGCAAGTTTTTTCAAT+TGG + chr7.1:4199972-4199991 MS.gene23105:CDS 30.0%
ACTGAATGGAAGAGAAAGAA+AGG + chr7.1:4199272-4199291 MS.gene23105:CDS 35.0%
ATTGGACAATATGGGATTTG+TGG + chr7.1:4199426-4199445 MS.gene23105:CDS 35.0%
CAATACTCTCACAAACTTCA+TGG + chr7.1:4199513-4199532 MS.gene23105:CDS 35.0%
CATTTACATCCAAATGCATG+TGG + chr7.1:4199803-4199822 MS.gene23105:CDS 35.0%
CTTCTGATCAAATGTGTGTA+TGG - chr7.1:4199667-4199686 None:intergenic 35.0%
TATAATACAGGCAGATCAAG+AGG + chr7.1:4199226-4199245 MS.gene23105:intron 35.0%
TTACACATCACTGACATTGT+TGG + chr7.1:4199865-4199884 MS.gene23105:CDS 35.0%
! AAATCAAGTTGTGTGAAAGG+TGG + chr7.1:4199827-4199846 MS.gene23105:CDS 35.0%
! ACACATTTGATCAGAAGTGT+TGG + chr7.1:4199670-4199689 MS.gene23105:intron 35.0%
! CATGAAGTTTGTGAGAGTAT+TGG - chr7.1:4199515-4199534 None:intergenic 35.0%
! CTTTTGCTTAGTTCAACACT+TGG + chr7.1:4199995-4200014 MS.gene23105:CDS 35.0%
! TTGTCAGCATTGGACAATAT+GGG + chr7.1:4199418-4199437 MS.gene23105:CDS 35.0%
!! TTTTGGATCTCTAGAAGTTC+TGG + chr7.1:4199612-4199631 MS.gene23105:CDS 35.0%
AACTCAAGCTTCTCACTGAA+TGG + chr7.1:4199258-4199277 MS.gene23105:CDS 40.0%
ACTTTCTTGCTTTCCCTTGT+TGG + chr7.1:4199541-4199560 MS.gene23105:CDS 40.0%
AGAGGATCTATGACTGCATT+TGG + chr7.1:4199908-4199927 MS.gene23105:CDS 40.0%
AGATCCAAAAAGCAAGCAAG+TGG - chr7.1:4199602-4199621 None:intergenic 40.0%
AGTTGTGTGAAAGGTGGAAT+AGG + chr7.1:4199833-4199852 MS.gene23105:CDS 40.0%
ATCACTGACATTGTTGGCAT+TGG + chr7.1:4199871-4199890 MS.gene23105:CDS 40.0%
CTTGATTTCCCACATGCATT+TGG - chr7.1:4199815-4199834 None:intergenic 40.0%
GAATGGAAGAGAAAGAAAGG+TGG + chr7.1:4199275-4199294 MS.gene23105:CDS 40.0%
TACACAAAGAGCTTGGCATT+GGG + chr7.1:4200054-4200073 MS.gene23105:CDS 40.0%
TATGGGATTTGTGGCAAACA+TGG + chr7.1:4199435-4199454 MS.gene23105:CDS 40.0%
TCAACACTTGGAGCAATTAC+AGG + chr7.1:4200007-4200026 MS.gene23105:CDS 40.0%
TCACTGACATTGTTGGCATT+GGG + chr7.1:4199872-4199891 MS.gene23105:CDS 40.0%
TGATGTAGTGTTGTCAGCAT+TGG + chr7.1:4199408-4199427 MS.gene23105:intron 40.0%
! ACATTGTTGGCATTGGGAAT+AGG + chr7.1:4199878-4199897 MS.gene23105:CDS 40.0%
! ACATTTGTAGGCTTTGGCAT+TGG + chr7.1:4199757-4199776 MS.gene23105:intron 40.0%
! AGAGAAAGAAAGGTGGATTC+AGG + chr7.1:4199282-4199301 MS.gene23105:CDS 40.0%
! GAGAAAGAAAGGTGGATTCA+GGG + chr7.1:4199283-4199302 MS.gene23105:CDS 40.0%
! GGGAAATCAAGTTGTGTGAA+AGG + chr7.1:4199824-4199843 MS.gene23105:CDS 40.0%
! GTTGTCAGCATTGGACAATA+TGG + chr7.1:4199417-4199436 MS.gene23105:CDS 40.0%
!! AGGTGTTACTGGTGTTGTTT+GGG + chr7.1:4200027-4200046 MS.gene23105:CDS 40.0%
!! TTCACCACTTGCTTGCTTTT+TGG + chr7.1:4199595-4199614 MS.gene23105:CDS 40.0%
ACACAAAGAGCTTGGCATTG+GGG + chr7.1:4200055-4200074 MS.gene23105:CDS 45.0%
GTACACAAAGAGCTTGGCAT+TGG + chr7.1:4200053-4200072 MS.gene23105:CDS 45.0%
TGAGATGAAGCCACCAACAA+GGG - chr7.1:4199557-4199576 None:intergenic 45.0%
TTCTTGCTTTCCCTTGTTGG+TGG + chr7.1:4199544-4199563 MS.gene23105:CDS 45.0%
! GCAAGTGCTTTTGCCTCATT+TGG - chr7.1:4199959-4199978 None:intergenic 45.0%
! GGAGCAATTACAGGTGTTAC+TGG + chr7.1:4200016-4200035 MS.gene23105:CDS 45.0%
! GGGTTAGTACACAAAGAGCT+TGG + chr7.1:4200047-4200066 MS.gene23105:CDS 45.0%
! TGTTGGCATTGGGAATAGGA+GGG + chr7.1:4199882-4199901 MS.gene23105:CDS 45.0%
! TTGTTGGCATTGGGAATAGG+AGG + chr7.1:4199881-4199900 MS.gene23105:CDS 45.0%
!! CAGGTGTTACTGGTGTTGTT+TGG + chr7.1:4200026-4200045 MS.gene23105:CDS 45.0%
!! GTGAGAGTATTGGCAGAACT+TGG - chr7.1:4199505-4199524 None:intergenic 45.0%
CTGAGATGAAGCCACCAACA+AGG - chr7.1:4199558-4199577 None:intergenic 50.0%
TTGGGAATAGGAGGGGTAAG+AGG + chr7.1:4199890-4199909 MS.gene23105:CDS 50.0%
! GTTGGCATTGGGAATAGGAG+GGG + chr7.1:4199883-4199902 MS.gene23105:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 4199148 4200130 4199148 ID=MS.gene23105
chr7.1 mRNA 4199148 4200130 4199148 ID=MS.gene23105.t1;Parent=MS.gene23105
chr7.1 exon 4199148 4199150 4199148 ID=MS.gene23105.t1.exon1;Parent=MS.gene23105.t1
chr7.1 CDS 4199148 4199150 4199148 ID=cds.MS.gene23105.t1;Parent=MS.gene23105.t1
chr7.1 exon 4199236 4199323 4199236 ID=MS.gene23105.t1.exon2;Parent=MS.gene23105.t1
chr7.1 CDS 4199236 4199323 4199236 ID=cds.MS.gene23105.t1;Parent=MS.gene23105.t1
chr7.1 exon 4199416 4199633 4199416 ID=MS.gene23105.t1.exon3;Parent=MS.gene23105.t1
chr7.1 CDS 4199416 4199633 4199416 ID=cds.MS.gene23105.t1;Parent=MS.gene23105.t1
chr7.1 exon 4199767 4200130 4199767 ID=MS.gene23105.t1.exon4;Parent=MS.gene23105.t1
chr7.1 CDS 4199767 4200130 4199767 ID=cds.MS.gene23105.t1;Parent=MS.gene23105.t1
Gene Sequence

>MS.gene23105

ATGGTAAGGTTCTACTCATTCATCTCACTCATTTTTCTAACCTTGTTTCCATGCATATATTTGATGAGTTTCAAATCTTATAATACAGGCAGATCAAGAGGAAACTGAAGAACTCAAGCTTCTCACTGAATGGAAGAGAAAGAAAGGTGGATTCAGGGCTTCTATGTTTATTTTTGGTAAGCAAAAGAAAAAAACTAAACTCTTTGTTGGTTCTGTTTTTTGCTAATTTGAATTTGATGCAAACTATGTTCTTGTTTTTTTGATGTAGTGTTGTCAGCATTGGACAATATGGGATTTGTGGCAAACATGGTTAGCTTAGTTTTATATTTTTATGGAGTGATGCACTTTGATCTACCAAGTTCTGCCAATACTCTCACAAACTTCATGGGATCAACTTTCTTGCTTTCCCTTGTTGGTGGCTTCATCTCAGATACTTACTTAAATAGATTCACCACTTGCTTGCTTTTTGGATCTCTAGAAGTTCTGGTAAGTCCTAAACTATTGATCATGTTAACACCATACACACATTTGATCAGAAGTGTTGGTGTTACCGAGATTCTAAACAATATACTAATATTTAGTATCTTAATATCTTATTTTTTTGATATAACATTTGTAGGCTTTGGCATTGGTTACTTTTCAAGCTGCTTCAGATCATTTACATCCAAATGCATGTGGGAAATCAAGTTGTGTGAAAGGTGGAATAGGATTCATGTTTTACACATCACTGACATTGTTGGCATTGGGAATAGGAGGGGTAAGAGGATCTATGACTGCATTTGGTGCTGACCAATTTGAAGAAAAAGATCCAAATGAGGCAAAAGCACTTGCAAGTTTTTTCAATTGGCTTTTGCTTAGTTCAACACTTGGAGCAATTACAGGTGTTACTGGTGTTGTTTGGGTTAGTACACAAAGAGCTTGGCATTGGGGATTTTTCATCATAACTATAGCTTCTTCTATTGGCTTTGTCACACTTGCTCTTG

Protein sequence

>MS.gene23105.t1

MADQEETEELKLLTEWKRKKGGFRASMFIFVLSALDNMGFVANMVSLVLYFYGVMHFDLPSSANTLTNFMGSTFLLSLVGGFISDTYLNRFTTCLLFGSLEVLALALVTFQAASDHLHPNACGKSSCVKGGIGFMFYTSLTLLALGIGGVRGSMTAFGADQFEEKDPNEAKALASFFNWLLLSSTLGAITGVTGVVWVSTQRAWHWGFFIITIASSIGFVTLAL