Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31650.t1 | XP_024630955.1 | 96.6 | 709 | 24 | 0 | 1 | 709 | 1 | 709 | 0.00E+00 | 1345.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31650.t1 | Q9XSC3 | 30.7 | 417 | 269 | 9 | 209 | 616 | 459 | 864 | 2.5e-42 | 175.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31650.t1 | A0A396JHT0 | 96.6 | 709 | 24 | 0 | 1 | 709 | 1 | 709 | 0.0e+00 | 1345.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene31650 | 0.819444 | 1.16E-52 | -1.69E-46 |
| MS.gene049178 | MS.gene31650 | 0.803406 | 3.54E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene31650 | 0.812507 | 4.10E-51 | -1.69E-46 |
| MS.gene049807 | MS.gene31650 | 0.825648 | 4.18E-54 | -1.69E-46 |
| MS.gene049821 | MS.gene31650 | 0.809578 | 1.77E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene31650 | 0.804821 | 1.80E-49 | -1.69E-46 |
| MS.gene050253 | MS.gene31650 | 0.800725 | 1.26E-48 | -1.69E-46 |
| MS.gene050300 | MS.gene31650 | -0.809775 | 1.60E-50 | -1.69E-46 |
| MS.gene050556 | MS.gene31650 | 0.800579 | 1.35E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene31650 | 0.842957 | 1.88E-58 | -1.69E-46 |
| MS.gene050808 | MS.gene31650 | 0.811416 | 7.08E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene31650 | 0.838395 | 2.95E-57 | -1.69E-46 |
| MS.gene050901 | MS.gene31650 | 0.831835 | 1.33E-55 | -1.69E-46 |
| MS.gene051102 | MS.gene31650 | 0.813948 | 1.98E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene31650 | 0.812766 | 3.59E-51 | -1.69E-46 |
| MS.gene051343 | MS.gene31650 | 0.802487 | 5.48E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene31650 | 0.812038 | 5.18E-51 | -1.69E-46 |
| MS.gene051720 | MS.gene31650 | 0.808086 | 3.68E-50 | -1.69E-46 |
| MS.gene051885 | MS.gene31650 | 0.80574 | 1.15E-49 | -1.69E-46 |
| MS.gene052133 | MS.gene31650 | 0.806376 | 8.48E-50 | -1.69E-46 |
| MS.gene052242 | MS.gene31650 | -0.821829 | 3.28E-53 | -1.69E-46 |
| MS.gene052307 | MS.gene31650 | 0.825977 | 3.49E-54 | -1.69E-46 |
| MS.gene052463 | MS.gene31650 | 0.805471 | 1.31E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene31650 | 0.827056 | 1.93E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene31650 | 0.826765 | 2.27E-54 | -1.69E-46 |
| MS.gene052665 | MS.gene31650 | 0.809554 | 1.79E-50 | -1.69E-46 |
| MS.gene052673 | MS.gene31650 | -0.808156 | 3.56E-50 | -1.69E-46 |
| MS.gene052732 | MS.gene31650 | 0.801535 | 8.60E-49 | -1.69E-46 |
| MS.gene052932 | MS.gene31650 | 0.802588 | 5.23E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene31650 | 0.820609 | 6.27E-53 | -1.69E-46 |
| MS.gene053143 | MS.gene31650 | 0.811053 | 8.49E-51 | -1.69E-46 |
| MS.gene053144 | MS.gene31650 | 0.810736 | 9.94E-51 | -1.69E-46 |
| MS.gene053563 | MS.gene31650 | 0.804598 | 2.00E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene31650 | 0.83991 | 1.19E-57 | -1.69E-46 |
| MS.gene054584 | MS.gene31650 | 0.805767 | 1.14E-49 | -1.69E-46 |
| MS.gene054824 | MS.gene31650 | 0.807033 | 6.16E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene31650 | 0.805779 | 1.13E-49 | -1.69E-46 |
| MS.gene055313 | MS.gene31650 | 0.8218 | 3.33E-53 | -1.69E-46 |
| MS.gene055314 | MS.gene31650 | 0.806547 | 7.80E-50 | -1.69E-46 |
| MS.gene055465 | MS.gene31650 | 0.82725 | 1.74E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene31650 | 0.803026 | 4.24E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene31650 | 0.814116 | 1.81E-51 | -1.69E-46 |
| MS.gene055469 | MS.gene31650 | 0.867274 | 1.54E-65 | -1.69E-46 |
| MS.gene055513 | MS.gene31650 | 0.81963 | 1.05E-52 | -1.69E-46 |
| MS.gene055891 | MS.gene31650 | 0.814998 | 1.16E-51 | -1.69E-46 |
| MS.gene056136 | MS.gene31650 | 0.818098 | 2.34E-52 | -1.69E-46 |
| MS.gene056308 | MS.gene31650 | 0.856696 | 2.70E-62 | -1.69E-46 |
| MS.gene056390 | MS.gene31650 | 0.801873 | 7.33E-49 | -1.69E-46 |
| MS.gene056507 | MS.gene31650 | 0.812407 | 4.31E-51 | -1.69E-46 |
| MS.gene056522 | MS.gene31650 | -0.810626 | 1.05E-50 | -1.69E-46 |
| MS.gene058638 | MS.gene31650 | 0.825851 | 3.74E-54 | -1.69E-46 |
| MS.gene058639 | MS.gene31650 | 0.833119 | 6.40E-56 | -1.69E-46 |
| MS.gene058852 | MS.gene31650 | 0.861068 | 1.33E-63 | -1.69E-46 |
| MS.gene059171 | MS.gene31650 | 0.88844 | 5.89E-73 | -1.69E-46 |
| MS.gene059713 | MS.gene31650 | 0.801497 | 8.76E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene31650 | 0.814878 | 1.23E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene31650 | 0.819894 | 9.14E-53 | -1.69E-46 |
| MS.gene060603 | MS.gene31650 | 0.802945 | 4.41E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene31650 | 0.83896 | 2.11E-57 | -1.69E-46 |
| MS.gene061100 | MS.gene31650 | 0.831383 | 1.72E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene057883 | MS.gene31650 | PPI |
| MS.gene31650 | MS.gene056653 | PPI |
| MS.gene016758 | MS.gene31650 | PPI |
| MS.gene81617 | MS.gene31650 | PPI |
| MS.gene057886 | MS.gene31650 | PPI |
| MS.gene070509 | MS.gene31650 | PPI |
| MS.gene070503 | MS.gene31650 | PPI |
| MS.gene81620 | MS.gene31650 | PPI |
| MS.gene070505 | MS.gene31650 | PPI |
| MS.gene81615 | MS.gene31650 | PPI |
| MS.gene070507 | MS.gene31650 | PPI |
| MS.gene40671 | MS.gene31650 | PPI |
| MS.gene31650 | MS.gene070511 | PPI |
| MS.gene070492 | MS.gene31650 | PPI |
| MS.gene003811 | MS.gene31650 | PPI |
| MS.gene016742 | MS.gene31650 | PPI |
| MS.gene070510 | MS.gene31650 | PPI |
| MS.gene81622 | MS.gene31650 | PPI |
| MS.gene67840 | MS.gene31650 | PPI |
| MS.gene016743 | MS.gene31650 | PPI |
| MS.gene45734 | MS.gene31650 | PPI |
| MS.gene37911 | MS.gene31650 | PPI |
| MS.gene057884 | MS.gene31650 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31650.t1 | MTR_1g007740 | 96.464 | 707 | 25 | 0 | 1 | 707 | 1 | 707 | 0.0 | 1411 |
| MS.gene31650.t1 | MTR_3g491920 | 62.534 | 726 | 227 | 14 | 1 | 707 | 1 | 700 | 0.0 | 855 |
| MS.gene31650.t1 | MTR_8g100005 | 45.254 | 727 | 350 | 12 | 8 | 707 | 7 | 712 | 0.0 | 582 |
| MS.gene31650.t1 | MTR_8g092890 | 36.111 | 684 | 328 | 18 | 50 | 709 | 47 | 645 | 4.66e-124 | 384 |
| MS.gene31650.t1 | MTR_2g079740 | 41.493 | 576 | 260 | 17 | 196 | 709 | 298 | 858 | 6.39e-123 | 387 |
| MS.gene31650.t1 | MTR_8g100005 | 44.016 | 493 | 234 | 10 | 8 | 474 | 7 | 483 | 1.98e-122 | 375 |
| MS.gene31650.t1 | MTR_3g095780 | 44.928 | 483 | 238 | 10 | 233 | 709 | 168 | 628 | 8.81e-120 | 372 |
| MS.gene31650.t1 | MTR_7g060420 | 46.253 | 387 | 169 | 8 | 234 | 595 | 392 | 764 | 3.62e-91 | 306 |
| MS.gene31650.t1 | MTR_1g072140 | 27.119 | 236 | 152 | 8 | 338 | 566 | 48 | 270 | 2.96e-17 | 84.0 |
| MS.gene31650.t1 | MTR_4g119620 | 26.482 | 253 | 152 | 9 | 251 | 487 | 19 | 253 | 3.72e-16 | 80.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene31650.t1 | AT5G24320 | 48.767 | 730 | 293 | 20 | 10 | 707 | 12 | 692 | 0.0 | 610 |
| MS.gene31650.t1 | AT5G24320 | 48.774 | 734 | 291 | 21 | 10 | 707 | 12 | 696 | 0.0 | 608 |
| MS.gene31650.t1 | AT5G53500 | 48.801 | 709 | 293 | 17 | 6 | 707 | 7 | 652 | 0.0 | 595 |
| MS.gene31650.t1 | AT5G53500 | 48.801 | 709 | 293 | 17 | 6 | 707 | 7 | 652 | 0.0 | 595 |
| MS.gene31650.t1 | AT5G42010 | 49.074 | 540 | 236 | 14 | 186 | 707 | 189 | 707 | 2.49e-162 | 485 |
| MS.gene31650.t1 | AT1G64610 | 48.190 | 525 | 225 | 12 | 191 | 707 | 160 | 645 | 3.15e-157 | 469 |
| MS.gene31650.t1 | AT1G64610 | 48.190 | 525 | 225 | 12 | 191 | 707 | 160 | 645 | 3.15e-157 | 469 |
| MS.gene31650.t1 | AT5G42010 | 52.589 | 367 | 165 | 5 | 186 | 548 | 189 | 550 | 5.69e-128 | 392 |
| MS.gene31650.t1 | AT5G54200 | 44.467 | 497 | 250 | 11 | 232 | 709 | 336 | 825 | 1.25e-124 | 391 |
| MS.gene31650.t1 | AT3G15470 | 40.497 | 563 | 277 | 11 | 194 | 709 | 332 | 883 | 5.86e-120 | 380 |
| MS.gene31650.t1 | AT1G48870 | 39.666 | 479 | 228 | 12 | 231 | 706 | 170 | 590 | 2.09e-98 | 315 |
| MS.gene31650.t1 | AT1G48870 | 39.666 | 479 | 228 | 12 | 231 | 706 | 170 | 590 | 2.09e-98 | 315 |
| MS.gene31650.t1 | AT1G48870 | 39.666 | 479 | 228 | 12 | 231 | 706 | 170 | 590 | 2.09e-98 | 315 |
| MS.gene31650.t1 | AT5G02430 | 39.768 | 518 | 263 | 11 | 232 | 706 | 384 | 895 | 4.04e-96 | 317 |
| MS.gene31650.t1 | AT2G37670 | 39.615 | 520 | 262 | 12 | 234 | 706 | 380 | 894 | 2.79e-93 | 310 |
| MS.gene31650.t1 | AT2G37670 | 39.615 | 520 | 262 | 12 | 234 | 706 | 379 | 893 | 3.44e-93 | 309 |
| MS.gene31650.t1 | AT3G49660 | 24.534 | 322 | 170 | 11 | 253 | 567 | 18 | 273 | 1.38e-18 | 87.8 |
| MS.gene31650.t1 | AT2G16405 | 22.881 | 236 | 166 | 4 | 348 | 567 | 199 | 434 | 4.95e-12 | 69.3 |
Find 151 sgRNAs with CRISPR-Local
Find 223 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTGACACCCTTGTTTA+TGG | 0.143018 | 1.1:-11840562 | MS.gene31650:CDS |
| CTTATACAGGTAGGGATTAT+TGG | 0.170811 | 1.1:-11839814 | MS.gene31650:intron |
| GAGGGTTTGCTGAGAGATTT+TGG | 0.182081 | 1.1:-11841386 | MS.gene31650:CDS |
| TCCATGAATTCTTCAGAATT+TGG | 0.194639 | 1.1:-11841131 | MS.gene31650:CDS |
| AAGAGGAATAACCGGCTTTC+AGG | 0.207009 | 1.1:-11839400 | MS.gene31650:intron |
| TACATCCTGTATTTACTTTA+CGG | 0.214087 | 1.1:-11840598 | MS.gene31650:CDS |
| CTTGAGGCGACCTCTTATTT+AGG | 0.234458 | 1.1:+11838819 | None:intergenic |
| TGGTCATGGAGGTGAAATTT+TGG | 0.235145 | 1.1:-11840427 | MS.gene31650:CDS |
| TTCTTTGTTTCTTGCATTGA+CGG | 0.263293 | 1.1:+11840799 | None:intergenic |
| GGAACTTTCAGCTCTTTATA+TGG | 0.266044 | 1.1:-11840775 | MS.gene31650:CDS |
| AAAGTGGATGGAATTGAGTT+TGG | 0.304155 | 1.1:-11841306 | MS.gene31650:CDS |
| GTGTTTCATTCTCTGGTTGT+AGG | 0.305208 | 1.1:-11840839 | MS.gene31650:CDS |
| TTCTTCAGAATTTGGTGCTT+TGG | 0.317391 | 1.1:-11841123 | MS.gene31650:CDS |
| TCCTAAGGTCTTCCGTTTGA+TGG | 0.319986 | 1.1:-11840472 | MS.gene31650:CDS |
| ATACAGGATGTATCAGCTTC+TGG | 0.324470 | 1.1:+11840609 | None:intergenic |
| CGCATCTGTTGCAGTACCTT+GGG | 0.326050 | 1.1:-11838888 | MS.gene31650:CDS |
| GGATAAGTTGCGGAACCTTT+CGG | 0.326663 | 1.1:+11838734 | None:intergenic |
| TTGATAAAACTGTTCGTCTA+TGG | 0.334885 | 1.1:-11840236 | MS.gene31650:CDS |
| TTTGGATCAGTCAGTGGTTT+CGG | 0.338155 | 1.1:-11841054 | MS.gene31650:CDS |
| CTGATTGTCATGTTGTTGAT+TGG | 0.342478 | 1.1:-11839961 | MS.gene31650:CDS |
| CAATCACAACTATGCTTACT+TGG | 0.344066 | 1.1:-11839441 | MS.gene31650:CDS |
| GACAACCCTGAAGTTGATTC+TGG | 0.347739 | 1.1:-11841422 | MS.gene31650:CDS |
| TGGTGCTTTGGTGGAGAATT+CGG | 0.352335 | 1.1:-11841111 | MS.gene31650:CDS |
| ATAAAATCATTCCACAATTA+CGG | 0.355391 | 1.1:-11838563 | MS.gene31650:CDS |
| ACCAAATTCTGAAGAATTCA+TGG | 0.356917 | 1.1:+11841130 | None:intergenic |
| ACCAGTTACCAGCATGAGTT+TGG | 0.360497 | 1.1:-11840999 | MS.gene31650:CDS |
| TTCATTAGCGGATCAATAGA+TGG | 0.362082 | 1.1:-11840007 | MS.gene31650:CDS |
| GACACCCTTGTTTATGGATA+AGG | 0.363962 | 1.1:-11840556 | MS.gene31650:CDS |
| AGTTGATTCTGGTCCTCCTT+TGG | 0.373369 | 1.1:-11841411 | MS.gene31650:CDS |
| GGAGGACCAGAATCAACTTC+AGG | 0.378263 | 1.1:+11841416 | None:intergenic |
| AACCTTGAGAATTCGGTAGA+TGG | 0.380774 | 1.1:-11841275 | MS.gene31650:CDS |
| TAGATGGAAAAGTGCGCATA+TGG | 0.387508 | 1.1:-11839991 | MS.gene31650:CDS |
| TGATGGAGTGGAAGTAGGTT+TGG | 0.393251 | 1.1:-11841072 | MS.gene31650:CDS |
| ACCAAACTCATGCTGGTAAC+TGG | 0.395389 | 1.1:+11840998 | None:intergenic |
| GAACTTTCAGCTCTTTATAT+GGG | 0.405806 | 1.1:-11840774 | MS.gene31650:CDS |
| CTTGCTAGTGCCGGCGAAGA+TGG | 0.410754 | 1.1:-11840687 | MS.gene31650:CDS |
| GAAGACGGTGTTTCATTCTC+TGG | 0.423222 | 1.1:-11840846 | MS.gene31650:CDS |
| TTCTGGTCCTCCTTTGGTGG+AGG | 0.423302 | 1.1:-11841405 | MS.gene31650:CDS |
| TGAATTGTGGACCAGGAGTC+CGG | 0.426510 | 1.1:-11841360 | MS.gene31650:CDS |
| CGCCGGCACTAGCAAGATAC+TGG | 0.427472 | 1.1:+11840694 | None:intergenic |
| TGATTCTGGTCCTCCTTTGG+TGG | 0.429534 | 1.1:-11841408 | MS.gene31650:CDS |
| TTCAGAATTTGGTGCTTTGG+TGG | 0.430345 | 1.1:-11841120 | MS.gene31650:CDS |
| TCTTCTGGAAGAGGAATAAC+CGG | 0.432558 | 1.1:-11839408 | MS.gene31650:CDS |
| TCTGGTCCTCCTTTGGTGGA+GGG | 0.438960 | 1.1:-11841404 | MS.gene31650:CDS |
| AAACCACTTCATGAGTTTCA+TGG | 0.440737 | 1.1:-11840447 | MS.gene31650:CDS |
| AACAAGGAGAATCTGATAAC+AGG | 0.441398 | 1.1:-11840875 | MS.gene31650:CDS |
| TCCATCAAACGGAAGACCTT+AGG | 0.442471 | 1.1:+11840471 | None:intergenic |
| AGGAATGATGGAGTGGAAGT+AGG | 0.444491 | 1.1:-11841077 | MS.gene31650:CDS |
| AGAAATTATACCTGTCCATC+AGG | 0.448537 | 1.1:+11839899 | None:intergenic |
| TAGACCCCATGCATGACAAT+TGG | 0.455729 | 1.1:+11838616 | None:intergenic |
| TTGTAGGATTCAGCGAGTTA+AGG | 0.455745 | 1.1:-11840823 | MS.gene31650:CDS |
| AGTAATCGTGACTGCTGGTT+GGG | 0.456343 | 1.1:-11838594 | MS.gene31650:CDS |
| GTGCTATCGGCCTGATGGAC+AGG | 0.464270 | 1.1:-11839909 | MS.gene31650:intron |
| AGAATTCGGCATGCGAAGAT+AGG | 0.469347 | 1.1:-11841097 | MS.gene31650:CDS |
| GGTGAGGAGTTCGAGGGGAC+AGG | 0.481217 | 1.1:-11840978 | MS.gene31650:CDS |
| ATTCACCGTAAAGTAAATAC+AGG | 0.481895 | 1.1:+11840593 | None:intergenic |
| GGGATTATTGGCTCCATGAC+AGG | 0.482718 | 1.1:-11839802 | MS.gene31650:CDS |
| CTTTACGGTGAATGATCTCT+CGG | 0.483120 | 1.1:-11840583 | MS.gene31650:CDS |
| TACTTCCAATTGTCATGCAT+GGG | 0.483434 | 1.1:-11838621 | MS.gene31650:CDS |
| CTTCATGAGTTTCATGGTCA+TGG | 0.484621 | 1.1:-11840441 | MS.gene31650:CDS |
| CAATCAACAACATGACAATC+AGG | 0.489078 | 1.1:+11839962 | None:intergenic |
| ATAACTTTGTTAAAATCTTG+TGG | 0.491780 | 1.1:+11839262 | None:intergenic |
| CTTTCATTTCAAAGGAGTAC+AGG | 0.491830 | 1.1:+11838536 | None:intergenic |
| GATGATGATTATTTCATTAG+CGG | 0.495396 | 1.1:-11840019 | MS.gene31650:CDS |
| TTACTCTTGGGGCTTGAAGT+AGG | 0.496923 | 1.1:+11838698 | None:intergenic |
| ACGCATCTGTTGCAGTACCT+TGG | 0.499424 | 1.1:-11838889 | MS.gene31650:CDS |
| GCTCCATGACAGGCAATTGT+CGG | 0.502618 | 1.1:-11839792 | MS.gene31650:CDS |
| GCAGTATTTGCTGTCATCGT+CGG | 0.510836 | 1.1:-11840259 | MS.gene31650:intron |
| GAAGTAGGAAGTTTCTCCTC+GGG | 0.512166 | 1.1:+11838713 | None:intergenic |
| ATCGTGACTGCTGGTTGGGA+TGG | 0.512730 | 1.1:-11838590 | MS.gene31650:CDS |
| GAGGACCAGAATCAACTTCA+GGG | 0.513061 | 1.1:+11841417 | None:intergenic |
| TTGTCACCGCAGTGTGCTAT+CGG | 0.513075 | 1.1:-11839922 | MS.gene31650:CDS |
| CTAGCAAGATACTGGCCGTC+CGG | 0.518249 | 1.1:+11840702 | None:intergenic |
| AATTGGATGTCCTAAATAAG+AGG | 0.531200 | 1.1:-11838829 | MS.gene31650:CDS |
| TGAGTTTGGTGAGGAGTTCG+AGG | 0.532574 | 1.1:-11840985 | MS.gene31650:CDS |
| GAATTGTGGACCAGGAGTCC+GGG | 0.534742 | 1.1:-11841359 | MS.gene31650:CDS |
| GAGATTAATAGAATGAAAGA+TGG | 0.537127 | 1.1:-11841230 | MS.gene31650:CDS |
| TAGTAATCGTGACTGCTGGT+TGG | 0.539202 | 1.1:-11838595 | MS.gene31650:CDS |
| GCATGCGAAGATAGGAATGA+TGG | 0.541227 | 1.1:-11841089 | MS.gene31650:CDS |
| ATGAAATAATCATCATCCAC+AGG | 0.541795 | 1.1:+11840025 | None:intergenic |
| TCTAACACTACCCGGACTCC+TGG | 0.545596 | 1.1:+11841349 | None:intergenic |
| TTCCATCTACCGAATTCTCA+AGG | 0.548317 | 1.1:+11841273 | None:intergenic |
| TCACAAGTCAGAATCATTGA+AGG | 0.548563 | 1.1:-11839223 | MS.gene31650:CDS |
| GGCCAGTATCTTGCTAGTGC+CGG | 0.549193 | 1.1:-11840696 | MS.gene31650:CDS |
| GAAGTGGTTTCTCCATCAAA+CGG | 0.549389 | 1.1:+11840460 | None:intergenic |
| GAGTAAGTTTATAAAGTGGA+TGG | 0.549532 | 1.1:-11841318 | MS.gene31650:CDS |
| GCAGTGTGCTATCGGCCTGA+TGG | 0.550180 | 1.1:-11839914 | MS.gene31650:CDS |
| GTAGGAGTAAGTTTATAAAG+TGG | 0.551153 | 1.1:-11841322 | MS.gene31650:CDS |
| AAACCGACAATTGCCTGTCA+TGG | 0.552139 | 1.1:+11839789 | None:intergenic |
| GTACTTCCAATTGTCATGCA+TGG | 0.556893 | 1.1:-11838622 | MS.gene31650:CDS |
| TCGTGACTGCTGGTTGGGAT+GGG | 0.557894 | 1.1:-11838589 | MS.gene31650:CDS |
| TGTGGAATGTTAGTGACGAC+GGG | 0.565541 | 1.1:-11838964 | MS.gene31650:CDS |
| AACTGTTCGTCTATGGCAAG+TGG | 0.567280 | 1.1:-11840229 | MS.gene31650:CDS |
| CTCAGCAAACCCTCCACCAA+AGG | 0.567962 | 1.1:+11841395 | None:intergenic |
| TTTATCCTTATCCATAAACA+AGG | 0.568961 | 1.1:+11840551 | None:intergenic |
| ACTCCTCACCAAACTCATGC+TGG | 0.572712 | 1.1:+11840991 | None:intergenic |
| TATTTGGATTCTATTCCGAA+AGG | 0.577615 | 1.1:-11838749 | MS.gene31650:CDS |
| CTGTGGAATGTTAGTGACGA+CGG | 0.578440 | 1.1:-11838965 | MS.gene31650:CDS |
| AAGATGGAATTGTGCGATTG+TGG | 0.579171 | 1.1:-11840671 | MS.gene31650:CDS |
| TTGGATATGAATTGTGGACC+AGG | 0.579478 | 1.1:-11841367 | MS.gene31650:CDS |
| TCAATGCAAGAAACAAAGAA+AGG | 0.579785 | 1.1:-11840796 | MS.gene31650:CDS |
| TGAAGTAGGAAGTTTCTCCT+CGG | 0.582779 | 1.1:+11838712 | None:intergenic |
| ATTAATAGAATGAAAGATGG+TGG | 0.583671 | 1.1:-11841227 | MS.gene31650:CDS |
| ATCAAACGGAAGACCTTAGG+AGG | 0.585403 | 1.1:+11840474 | None:intergenic |
| GTGTCAATCTCAGATGCAAA+TGG | 0.586470 | 1.1:-11841452 | MS.gene31650:CDS |
| ATATACATTTGAGTCTTCAC+AGG | 0.587540 | 1.1:+11838988 | None:intergenic |
| GAATAAGAAGCACAATGGCT+AGG | 0.588859 | 1.1:-11841520 | None:intergenic |
| AGATGGAAAAGTGCGCATAT+GGG | 0.590347 | 1.1:-11839990 | MS.gene31650:CDS |
| CTACGCTCTCTAACACTACC+CGG | 0.590841 | 1.1:+11841341 | None:intergenic |
| GCGATTGTGGCAAGTTGTTG+AGG | 0.591064 | 1.1:-11840658 | MS.gene31650:CDS |
| CACAAGTCAGAATCATTGAA+GGG | 0.591839 | 1.1:-11839222 | MS.gene31650:CDS |
| CGGGTAGTGTTAGAGAGCGT+AGG | 0.595315 | 1.1:-11841340 | MS.gene31650:CDS |
| TCTGTTGCAGTACCTTGGGG+TGG | 0.600067 | 1.1:-11838884 | MS.gene31650:CDS |
| GTTTGAGTCGTGGACAAAGA+GGG | 0.600126 | 1.1:-11840952 | MS.gene31650:CDS |
| TTTCTCCTCGGGATAAGTTG+CGG | 0.600952 | 1.1:+11838724 | None:intergenic |
| TCTGACTTGTGAATCAGCAC+AGG | 0.603387 | 1.1:+11839234 | None:intergenic |
| TCGCACAATTCCATCTTCGC+CGG | 0.604000 | 1.1:+11840677 | None:intergenic |
| GTACAGGTAATCCGTAATTG+TGG | 0.604825 | 1.1:+11838552 | None:intergenic |
| AGTAGGTTTGGATCAGTCAG+TGG | 0.606958 | 1.1:-11841060 | MS.gene31650:CDS |
| AGCAAACCCTCCACCAAAGG+AGG | 0.608011 | 1.1:+11841398 | None:intergenic |
| GGTCTAGTAATCGTGACTGC+TGG | 0.608692 | 1.1:-11838599 | MS.gene31650:CDS |
| TGACCATGAAACTCATGAAG+TGG | 0.609680 | 1.1:+11840444 | None:intergenic |
| GTTTGAAAAGAACCGCTCGC+AGG | 0.610721 | 1.1:+11838910 | None:intergenic |
| GAGTTTGGTGAGGAGTTCGA+GGG | 0.610769 | 1.1:-11840984 | MS.gene31650:CDS |
| GGATCAAGGCATACAGCTTG+AGG | 0.611489 | 1.1:+11838803 | None:intergenic |
| GCGTTCAATGACATGCATGA+TGG | 0.613983 | 1.1:-11840904 | MS.gene31650:CDS |
| TGAATCTGTGAACGCTGCTG+AGG | 0.618609 | 1.1:-11841030 | MS.gene31650:CDS |
| ACTATGAAATTTAGTCCGGA+CGG | 0.619533 | 1.1:-11840717 | MS.gene31650:CDS |
| TGTTTGAGTCGTGGACAAAG+AGG | 0.619572 | 1.1:-11840953 | MS.gene31650:CDS |
| GATAACAGGAAGCACGAAGA+CGG | 0.624901 | 1.1:-11840861 | MS.gene31650:CDS |
| TTATCCTTATCCATAAACAA+GGG | 0.630847 | 1.1:+11840552 | None:intergenic |
| CGAAGATAGGAATGATGGAG+TGG | 0.631147 | 1.1:-11841084 | MS.gene31650:CDS |
| TCCATCCGAAGTAAAAGATG+CGG | 0.632163 | 1.1:+11839027 | None:intergenic |
| AAGACTCAAATGTATATCTG+TGG | 0.633398 | 1.1:-11838982 | MS.gene31650:CDS |
| GGACAGGTATGTTTGAGTCG+TGG | 0.645058 | 1.1:-11840962 | MS.gene31650:CDS |
| GGCAAGTTGTTGAGGATGAG+AGG | 0.647793 | 1.1:-11840650 | MS.gene31650:CDS |
| TGTTGATTGGACTGATGTCA+AGG | 0.649634 | 1.1:-11839948 | MS.gene31650:CDS |
| TCAGATTTCAAACCACCCCA+AGG | 0.650854 | 1.1:+11838872 | None:intergenic |
| ATGCATACAATTCAATCCTG+TGG | 0.653407 | 1.1:-11840041 | MS.gene31650:CDS |
| ACTGTTCGTCTATGGCAAGT+GGG | 0.654097 | 1.1:-11840228 | MS.gene31650:CDS |
| GCATCTGTTGCAGTACCTTG+GGG | 0.656255 | 1.1:-11838887 | MS.gene31650:CDS |
| TTACCAGCATGAGTTTGGTG+AGG | 0.658249 | 1.1:-11840994 | MS.gene31650:CDS |
| CATGAGTTTCATGGTCATGG+AGG | 0.673674 | 1.1:-11840438 | MS.gene31650:CDS |
| AGTAGTGTGAGCAAAAGTCA+TGG | 0.676316 | 1.1:-11841203 | MS.gene31650:CDS |
| AGGTTCCGCAACTTATCCCG+AGG | 0.678766 | 1.1:-11838729 | MS.gene31650:CDS |
| ACTTCCAATTGTCATGCATG+GGG | 0.679789 | 1.1:-11838620 | MS.gene31650:CDS |
| CAAGATATTCAAGCGCACGA+AGG | 0.706142 | 1.1:-11840750 | MS.gene31650:CDS |
| AGTTTGGTGAGGAGTTCGAG+GGG | 0.707819 | 1.1:-11840983 | MS.gene31650:CDS |
| TGCATGATGGATGTACAACA+AGG | 0.718046 | 1.1:-11840891 | MS.gene31650:CDS |
| AGAAGATTAAGTCCTGCGAG+CGG | 0.742727 | 1.1:-11838922 | MS.gene31650:CDS |
| ATCAGGCCGATAGCACACTG+CGG | 0.805171 | 1.1:+11839916 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATCAATTAATTAACTA+CGG | + | chr1.1:11840752-11840771 | None:intergenic | 10.0% |
| !! | CTAAATTTCATAGTAAAAAT+TGG | + | chr1.1:11839327-11839346 | None:intergenic | 15.0% |
| !! | TTCAAAATTCTATGAAAAAT+TGG | - | chr1.1:11839733-11839752 | MS.gene31650:intron | 15.0% |
| !!! | CATTGAAAATTCTAAAAAAT+TGG | - | chr1.1:11841204-11841223 | MS.gene31650:CDS | 15.0% |
| !! | AAAAGTCAAATTAGATAGAT+AGG | + | chr1.1:11840932-11840951 | None:intergenic | 20.0% |
| !! | ATAAAATCATTCCACAATTA+CGG | - | chr1.1:11841487-11841506 | MS.gene31650:CDS | 20.0% |
| !! | ATAACTTTGTTAAAATCTTG+TGG | + | chr1.1:11840791-11840810 | None:intergenic | 20.0% |
| !! | TAATTTCTTTACATTTCCTT+CGG | - | chr1.1:11840166-11840185 | MS.gene31650:intron | 20.0% |
| !! | TAGAATCCAAATAAAAATCT+TGG | + | chr1.1:11841294-11841313 | None:intergenic | 20.0% |
| !! | TGAAAAATTGGAAATTGATT+TGG | - | chr1.1:11839745-11839764 | MS.gene31650:intron | 20.0% |
| !!! | AAATTTGTTTTGTGAAAAGA+GGG | - | chr1.1:11840527-11840546 | MS.gene31650:CDS | 20.0% |
| !!! | ACAAGATTTTAACAAAGTTA+TGG | - | chr1.1:11840790-11840809 | MS.gene31650:CDS | 20.0% |
| !!! | CAATTTTCTCAAACTATTAT+CGG | - | chr1.1:11840430-11840449 | MS.gene31650:CDS | 20.0% |
| !!! | TTTTACTATGAAATTTAGTC+CGG | - | chr1.1:11839329-11839348 | MS.gene31650:intron | 20.0% |
| ! | AAAAGACAACAGAACTTAAT+TGG | + | chr1.1:11840707-11840726 | None:intergenic | 25.0% |
| ! | AATACATAAGAAGAACAGAA+AGG | + | chr1.1:11839902-11839921 | None:intergenic | 25.0% |
| ! | AATGTCGTTGAAAAATTCAA+AGG | - | chr1.1:11840854-11840873 | MS.gene31650:CDS | 25.0% |
| ! | ATTAATAGAATGAAAGATGG+TGG | - | chr1.1:11838823-11838842 | MS.gene31650:CDS | 25.0% |
| ! | GAACTTAATTGGTGTAAAAA+AGG | + | chr1.1:11840696-11840715 | None:intergenic | 25.0% |
| ! | GAGATTAATAGAATGAAAGA+TGG | - | chr1.1:11838820-11838839 | MS.gene31650:CDS | 25.0% |
| ! | GATGATGATTATTTCATTAG+CGG | - | chr1.1:11840031-11840050 | MS.gene31650:CDS | 25.0% |
| ! | TACATCCTGTATTTACTTTA+CGG | - | chr1.1:11839452-11839471 | MS.gene31650:CDS | 25.0% |
| ! | TTATCCTTATCCATAAACAA+GGG | + | chr1.1:11839501-11839520 | None:intergenic | 25.0% |
| ! | TTTATCCTTATCCATAAACA+AGG | + | chr1.1:11839502-11839521 | None:intergenic | 25.0% |
| !! | TCTAAGCCAAGATTTTTATT+TGG | - | chr1.1:11841285-11841304 | MS.gene31650:CDS | 25.0% |
| !! | TGAATTTGTTTACCTTATAC+AGG | - | chr1.1:11840223-11840242 | MS.gene31650:CDS | 25.0% |
| !!! | AGTGAAGATTTTTTACTCTT+GGG | + | chr1.1:11841367-11841386 | None:intergenic | 25.0% |
| !!! | CAAATTTGTTTTGTGAAAAG+AGG | - | chr1.1:11840526-11840545 | MS.gene31650:CDS | 25.0% |
| !!! | CATTTCATGTTTTAAGTCTA+AGG | - | chr1.1:11840957-11840976 | MS.gene31650:CDS | 25.0% |
| !!! | TTAGCTTTAACTTCTTGTTT+TGG | - | chr1.1:11839929-11839948 | MS.gene31650:CDS | 25.0% |
| AAAAAACAATACCTGAAAGC+CGG | + | chr1.1:11840664-11840683 | None:intergenic | 30.0% | |
| AAGACTCAAATGTATATCTG+TGG | - | chr1.1:11841068-11841087 | MS.gene31650:CDS | 30.0% | |
| AATTGGATGTCCTAAATAAG+AGG | - | chr1.1:11841221-11841240 | MS.gene31650:CDS | 30.0% | |
| AGGATTTCTATATTGTTGTC+AGG | - | chr1.1:11840977-11840996 | MS.gene31650:CDS | 30.0% | |
| ATATACATTTGAGTCTTCAC+AGG | + | chr1.1:11841065-11841084 | None:intergenic | 30.0% | |
| ATGAAATAATCATCATCCAC+AGG | + | chr1.1:11840028-11840047 | None:intergenic | 30.0% | |
| ATTCACCGTAAAGTAAATAC+AGG | + | chr1.1:11839460-11839479 | None:intergenic | 30.0% | |
| CTTGGTAAAAAGAAATCTTC+TGG | - | chr1.1:11840627-11840646 | MS.gene31650:CDS | 30.0% | |
| GAACCAAAACCTTATAAAGT+GGG | + | chr1.1:11840894-11840913 | None:intergenic | 30.0% | |
| GAACTTTCAGCTCTTTATAT+GGG | - | chr1.1:11839276-11839295 | MS.gene31650:intron | 30.0% | |
| GAGTAAGTTTATAAAGTGGA+TGG | - | chr1.1:11838732-11838751 | MS.gene31650:CDS | 30.0% | |
| GGAAGAAATGAAGATTCTAT+GGG | - | chr1.1:11840187-11840206 | MS.gene31650:CDS | 30.0% | |
| GGATTTCTATATTGTTGTCA+GGG | - | chr1.1:11840978-11840997 | MS.gene31650:CDS | 30.0% | |
| GTAGGAGTAAGTTTATAAAG+TGG | - | chr1.1:11838728-11838747 | MS.gene31650:CDS | 30.0% | |
| TATTTGGATTCTATTCCGAA+AGG | - | chr1.1:11841301-11841320 | MS.gene31650:CDS | 30.0% | |
| TCAATGCAAGAAACAAAGAA+AGG | - | chr1.1:11839254-11839273 | MS.gene31650:CDS | 30.0% | |
| TCAGAAAAACCTTGAGAATT+CGG | - | chr1.1:11838768-11838787 | MS.gene31650:CDS | 30.0% | |
| TCCATGAATTCTTCAGAATT+TGG | - | chr1.1:11838919-11838938 | MS.gene31650:CDS | 30.0% | |
| TGAACCAAAACCTTATAAAG+TGG | + | chr1.1:11840895-11840914 | None:intergenic | 30.0% | |
| TTGATAAAACTGTTCGTCTA+TGG | - | chr1.1:11839814-11839833 | MS.gene31650:intron | 30.0% | |
| TTGTTTACCTTATACAGGTA+GGG | - | chr1.1:11840228-11840247 | MS.gene31650:CDS | 30.0% | |
| TTTGTTTACCTTATACAGGT+AGG | - | chr1.1:11840227-11840246 | MS.gene31650:CDS | 30.0% | |
| ! | AAAAAGAAATCTTCTGGAAG+AGG | - | chr1.1:11840633-11840652 | MS.gene31650:CDS | 30.0% |
| ! | AAAGAGGGATAATAACTTGT+TGG | - | chr1.1:11840542-11840561 | MS.gene31650:CDS | 30.0% |
| ! | ACCAAATTCTGAAGAATTCA+TGG | + | chr1.1:11838923-11838942 | None:intergenic | 30.0% |
| ! | GAGATTTTGGATATGAATTG+TGG | - | chr1.1:11838677-11838696 | MS.gene31650:CDS | 30.0% |
| ! | TTCTTTGTTTCTTGCATTGA+CGG | + | chr1.1:11839254-11839273 | None:intergenic | 30.0% |
| !! | AAGAGGGATAATAACTTGTT+GGG | - | chr1.1:11840543-11840562 | MS.gene31650:CDS | 30.0% |
| !! | CTTAATCTTCTTAGCTTTTG+TGG | + | chr1.1:11841119-11841138 | None:intergenic | 30.0% |
| !! | TGAATCTGATGTCTTTTTCA+GGG | + | chr1.1:11839541-11839560 | None:intergenic | 30.0% |
| !!! | CAGTGAAGATTTTTTACTCT+TGG | + | chr1.1:11841368-11841387 | None:intergenic | 30.0% |
| !!! | GTGAAGATTTTTTACTCTTG+GGG | + | chr1.1:11841366-11841385 | None:intergenic | 30.0% |
| !!! | TTGTCGGTTTTACAATGTAT+CGG | - | chr1.1:11840274-11840293 | MS.gene31650:intron | 30.0% |
| AAACCACTTCATGAGTTTCA+TGG | - | chr1.1:11839603-11839622 | MS.gene31650:intron | 35.0% | |
| AAAGTGGATGGAATTGAGTT+TGG | - | chr1.1:11838744-11838763 | MS.gene31650:CDS | 35.0% | |
| AACAAGGAGAATCTGATAAC+AGG | - | chr1.1:11839175-11839194 | MS.gene31650:intron | 35.0% | |
| ACTATGAAATTTAGTCCGGA+CGG | - | chr1.1:11839333-11839352 | MS.gene31650:intron | 35.0% | |
| AGAAATTATACCTGTCCATC+AGG | + | chr1.1:11840154-11840173 | None:intergenic | 35.0% | |
| AGAATCTTCATTTCTTCCGA+AGG | + | chr1.1:11840185-11840204 | None:intergenic | 35.0% | |
| ATGCATACAATTCAATCCTG+TGG | - | chr1.1:11840009-11840028 | MS.gene31650:CDS | 35.0% | |
| CAAAGAGGGTTAAAAAGAGT+TGG | - | chr1.1:11839112-11839131 | MS.gene31650:intron | 35.0% | |
| CAATAATCCCTACCTGTATA+AGG | + | chr1.1:11840238-11840257 | None:intergenic | 35.0% | |
| CAATCAACAACATGACAATC+AGG | + | chr1.1:11840091-11840110 | None:intergenic | 35.0% | |
| CAATCACAACTATGCTTACT+TGG | - | chr1.1:11840609-11840628 | MS.gene31650:CDS | 35.0% | |
| CACAAGTCAGAATCATTGAA+GGG | - | chr1.1:11840828-11840847 | MS.gene31650:CDS | 35.0% | |
| CGGAAGAAATGAAGATTCTA+TGG | - | chr1.1:11840186-11840205 | MS.gene31650:intron | 35.0% | |
| CTGATTGTCATGTTGTTGAT+TGG | - | chr1.1:11840089-11840108 | MS.gene31650:intron | 35.0% | |
| CTTAGAGAAAAAGAAGATGG+TGG | + | chr1.1:11841271-11841290 | None:intergenic | 35.0% | |
| CTTATACAGGTAGGGATTAT+TGG | - | chr1.1:11840236-11840255 | MS.gene31650:CDS | 35.0% | |
| GAAAAAGATGCTTCGATCTT+TGG | + | chr1.1:11840730-11840749 | None:intergenic | 35.0% | |
| GGAACTTTCAGCTCTTTATA+TGG | - | chr1.1:11839275-11839294 | MS.gene31650:intron | 35.0% | |
| TACTTCCAATTGTCATGCAT+GGG | - | chr1.1:11841429-11841448 | MS.gene31650:CDS | 35.0% | |
| TCACAAGTCAGAATCATTGA+AGG | - | chr1.1:11840827-11840846 | MS.gene31650:CDS | 35.0% | |
| TGGCTTAGAGAAAAAGAAGA+TGG | + | chr1.1:11841274-11841293 | None:intergenic | 35.0% | |
| TTTATCTGCATATGTAGCAC+CGG | - | chr1.1:11840334-11840353 | MS.gene31650:intron | 35.0% | |
| ! | AATGTCCGCATCTTTTACTT+CGG | - | chr1.1:11841018-11841037 | MS.gene31650:CDS | 35.0% |
| ! | ATTTGAAGCACTTGCTAAAC+TGG | + | chr1.1:11840511-11840530 | None:intergenic | 35.0% |
| ! | CTGAATCTGATGTCTTTTTC+AGG | + | chr1.1:11839542-11839561 | None:intergenic | 35.0% |
| ! | GTGAAATTTTGGATCTCTCT+TGG | - | chr1.1:11839634-11839653 | MS.gene31650:intron | 35.0% |
| ! | GTTTTCTCACACAGTAACTA+TGG | - | chr1.1:11839864-11839883 | MS.gene31650:intron | 35.0% |
| ! | TTCATTAGCGGATCAATAGA+TGG | - | chr1.1:11840043-11840062 | MS.gene31650:CDS | 35.0% |
| !! | AAAAAGAAGATGGTGGATCA+AGG | + | chr1.1:11841264-11841283 | None:intergenic | 35.0% |
| !! | AACTATTATCGGTGTCAACA+TGG | - | chr1.1:11840441-11840460 | MS.gene31650:CDS | 35.0% |
| !! | GAGCAAAAGTCATGGTTTTA+TGG | - | chr1.1:11838855-11838874 | MS.gene31650:CDS | 35.0% |
| !! | TTCTTCAGAATTTGGTGCTT+TGG | - | chr1.1:11838927-11838946 | MS.gene31650:CDS | 35.0% |
| !! | TTGCATCATTTTTCCTCCTA+AGG | - | chr1.1:11839563-11839582 | MS.gene31650:intron | 35.0% |
| !!! | CAAAAGTCATGGTTTTATGG+AGG | - | chr1.1:11838858-11838877 | MS.gene31650:CDS | 35.0% |
| !!! | GTTGGGTTTGCTTTTGTTTT+TGG | - | chr1.1:11840560-11840579 | MS.gene31650:CDS | 35.0% |
| !!! | TGGAGGATTTCTTTTCAAGT+CGG | - | chr1.1:11838875-11838894 | MS.gene31650:CDS | 35.0% |
| !!! | TGTCGGTTTTACAATGTATC+GGG | - | chr1.1:11840275-11840294 | MS.gene31650:intron | 35.0% |
| AACCTTGAGAATTCGGTAGA+TGG | - | chr1.1:11838775-11838794 | MS.gene31650:CDS | 40.0% | |
| AAGATGGAATTGTGCGATTG+TGG | - | chr1.1:11839379-11839398 | MS.gene31650:intron | 40.0% | |
| ACGCATCCAATATGAAGTAC+CGG | + | chr1.1:11840356-11840375 | None:intergenic | 40.0% | |
| ACTTCCAATTGTCATGCATG+GGG | - | chr1.1:11841430-11841449 | MS.gene31650:CDS | 40.0% | |
| AGTAGTGTGAGCAAAAGTCA+TGG | - | chr1.1:11838847-11838866 | MS.gene31650:CDS | 40.0% | |
| ATACAGGATGTATCAGCTTC+TGG | + | chr1.1:11839444-11839463 | None:intergenic | 40.0% | |
| CTTCATGAGTTTCATGGTCA+TGG | - | chr1.1:11839609-11839628 | MS.gene31650:intron | 40.0% | |
| CTTTACGGTGAATGATCTCT+CGG | - | chr1.1:11839467-11839486 | MS.gene31650:intron | 40.0% | |
| GAAGTGGTTTCTCCATCAAA+CGG | + | chr1.1:11839593-11839612 | None:intergenic | 40.0% | |
| GTACAGGTAATCCGTAATTG+TGG | + | chr1.1:11841501-11841520 | None:intergenic | 40.0% | |
| GTACTTCCAATTGTCATGCA+TGG | - | chr1.1:11841428-11841447 | MS.gene31650:CDS | 40.0% | |
| GTGTCAATCTCAGATGCAAA+TGG | - | chr1.1:11838598-11838617 | MS.gene31650:CDS | 40.0% | |
| GTGTTTCATTCTCTGGTTGT+AGG | - | chr1.1:11839211-11839230 | MS.gene31650:CDS | 40.0% | |
| TCCATCCGAAGTAAAAGATG+CGG | + | chr1.1:11841026-11841045 | None:intergenic | 40.0% | |
| TGAAGTAGGAAGTTTCTCCT+CGG | + | chr1.1:11841341-11841360 | None:intergenic | 40.0% | |
| TGACCATGAAACTCATGAAG+TGG | + | chr1.1:11839609-11839628 | None:intergenic | 40.0% | |
| TGTTTCGCTCCCACTTTATA+AGG | - | chr1.1:11840882-11840901 | MS.gene31650:CDS | 40.0% | |
| TTCAACTTACGTATCGTGTC+TGG | - | chr1.1:11840468-11840487 | MS.gene31650:CDS | 40.0% | |
| TTCCATCTACCGAATTCTCA+AGG | + | chr1.1:11838780-11838799 | None:intergenic | 40.0% | |
| TTGAATGTTGCATGTCGTGT+CGG | + | chr1.1:11840405-11840424 | None:intergenic | 40.0% | |
| TTGGATATGAATTGTGGACC+AGG | - | chr1.1:11838683-11838702 | MS.gene31650:CDS | 40.0% | |
| TTGTAGGATTCAGCGAGTTA+AGG | - | chr1.1:11839227-11839246 | MS.gene31650:CDS | 40.0% | |
| TTTGGATCAGTCAGTGGTTT+CGG | - | chr1.1:11838996-11839015 | MS.gene31650:CDS | 40.0% | |
| ! | AGATGGAAAAGTGCGCATAT+GGG | - | chr1.1:11840060-11840079 | MS.gene31650:intron | 40.0% |
| ! | GACACCCTTGTTTATGGATA+AGG | - | chr1.1:11839494-11839513 | MS.gene31650:intron | 40.0% |
| ! | GCTCCCACTTTATAAGGTTT+TGG | - | chr1.1:11840888-11840907 | MS.gene31650:CDS | 40.0% |
| ! | GGAATTGACACCCTTGTTTA+TGG | - | chr1.1:11839488-11839507 | MS.gene31650:intron | 40.0% |
| ! | GGTGCTACATATGCAGATAA+AGG | + | chr1.1:11840335-11840354 | None:intergenic | 40.0% |
| ! | TAGATGGAAAAGTGCGCATA+TGG | - | chr1.1:11840059-11840078 | MS.gene31650:intron | 40.0% |
| ! | TCTTCTGGAAGAGGAATAAC+CGG | - | chr1.1:11840642-11840661 | MS.gene31650:CDS | 40.0% |
| ! | TGGTCATGGAGGTGAAATTT+TGG | - | chr1.1:11839623-11839642 | MS.gene31650:intron | 40.0% |
| ! | TGTTGATTGGACTGATGTCA+AGG | - | chr1.1:11840102-11840121 | MS.gene31650:intron | 40.0% |
| !! | TGCATGATGGATGTACAACA+AGG | - | chr1.1:11839159-11839178 | MS.gene31650:intron | 40.0% |
| !! | TTCAGAATTTGGTGCTTTGG+TGG | - | chr1.1:11838930-11838949 | MS.gene31650:CDS | 40.0% |
| AAACCGACAATTGCCTGTCA+TGG | + | chr1.1:11840264-11840283 | None:intergenic | 45.0% | |
| AACTGTTCGTCTATGGCAAG+TGG | - | chr1.1:11839821-11839840 | MS.gene31650:intron | 45.0% | |
| ACCAAACTCATGCTGGTAAC+TGG | + | chr1.1:11839055-11839074 | None:intergenic | 45.0% | |
| ACCAGTTACCAGCATGAGTT+TGG | - | chr1.1:11839051-11839070 | MS.gene31650:CDS | 45.0% | |
| ACTGTTCGTCTATGGCAAGT+GGG | - | chr1.1:11839822-11839841 | MS.gene31650:intron | 45.0% | |
| AGAAGATTAAGTCCTGCGAG+CGG | - | chr1.1:11841128-11841147 | MS.gene31650:CDS | 45.0% | |
| AGAATTCGGCATGCGAAGAT+AGG | - | chr1.1:11838953-11838972 | MS.gene31650:CDS | 45.0% | |
| AGTAGGTTTGGATCAGTCAG+TGG | - | chr1.1:11838990-11839009 | MS.gene31650:CDS | 45.0% | |
| ATCAAACGGAAGACCTTAGG+AGG | + | chr1.1:11839579-11839598 | None:intergenic | 45.0% | |
| CAAGATATTCAAGCGCACGA+AGG | - | chr1.1:11839300-11839319 | MS.gene31650:intron | 45.0% | |
| CATGAGTTTCATGGTCATGG+AGG | - | chr1.1:11839612-11839631 | MS.gene31650:intron | 45.0% | |
| CTGTGGAATGTTAGTGACGA+CGG | - | chr1.1:11841085-11841104 | MS.gene31650:CDS | 45.0% | |
| GAAGACGGTGTTTCATTCTC+TGG | - | chr1.1:11839204-11839223 | MS.gene31650:CDS | 45.0% | |
| GAAGTAGGAAGTTTCTCCTC+GGG | + | chr1.1:11841340-11841359 | None:intergenic | 45.0% | |
| GAGGACCAGAATCAACTTCA+GGG | + | chr1.1:11838636-11838655 | None:intergenic | 45.0% | |
| GCATGCGAAGATAGGAATGA+TGG | - | chr1.1:11838961-11838980 | MS.gene31650:CDS | 45.0% | |
| GCGTTCAATGACATGCATGA+TGG | - | chr1.1:11839146-11839165 | MS.gene31650:intron | 45.0% | |
| GGATAAGTTGCGGAACCTTT+CGG | + | chr1.1:11841319-11841338 | None:intergenic | 45.0% | |
| GTTTGAGTCGTGGACAAAGA+GGG | - | chr1.1:11839098-11839117 | MS.gene31650:intron | 45.0% | |
| TAGACCCCATGCATGACAAT+TGG | + | chr1.1:11841437-11841456 | None:intergenic | 45.0% | |
| TAGTAATCGTGACTGCTGGT+TGG | - | chr1.1:11841455-11841474 | MS.gene31650:CDS | 45.0% | |
| TCAGATTTCAAACCACCCCA+AGG | + | chr1.1:11841181-11841200 | None:intergenic | 45.0% | |
| TCCATCAAACGGAAGACCTT+AGG | + | chr1.1:11839582-11839601 | None:intergenic | 45.0% | |
| TCCTAAGGTCTTCCGTTTGA+TGG | - | chr1.1:11839578-11839597 | MS.gene31650:intron | 45.0% | |
| TGATGGAGTGGAAGTAGGTT+TGG | - | chr1.1:11838978-11838997 | MS.gene31650:CDS | 45.0% | |
| TGGTGCTTTGGTGGAGAATT+CGG | - | chr1.1:11838939-11838958 | MS.gene31650:CDS | 45.0% | |
| TGTGGAATGTTAGTGACGAC+GGG | - | chr1.1:11841086-11841105 | MS.gene31650:CDS | 45.0% | |
| TGTTTGAGTCGTGGACAAAG+AGG | - | chr1.1:11839097-11839116 | MS.gene31650:intron | 45.0% | |
| TTACTCTTGGGGCTTGAAGT+AGG | + | chr1.1:11841355-11841374 | None:intergenic | 45.0% | |
| TTTCTCCTCGGGATAAGTTG+CGG | + | chr1.1:11841329-11841348 | None:intergenic | 45.0% | |
| ! | AAGAGGAATAACCGGCTTTC+AGG | - | chr1.1:11840650-11840669 | MS.gene31650:CDS | 45.0% |
| ! | AGGAATGATGGAGTGGAAGT+AGG | - | chr1.1:11838973-11838992 | MS.gene31650:CDS | 45.0% |
| ! | AGTAATCGTGACTGCTGGTT+GGG | - | chr1.1:11841456-11841475 | MS.gene31650:CDS | 45.0% |
| ! | AGTTGATTCTGGTCCTCCTT+TGG | - | chr1.1:11838639-11838658 | MS.gene31650:CDS | 45.0% |
| ! | CGAAGATAGGAATGATGGAG+TGG | - | chr1.1:11838966-11838985 | MS.gene31650:CDS | 45.0% |
| ! | CTTGAGGCGACCTCTTATTT+AGG | + | chr1.1:11841234-11841253 | None:intergenic | 45.0% |
| ! | GACAACCCTGAAGTTGATTC+TGG | - | chr1.1:11838628-11838647 | MS.gene31650:CDS | 45.0% |
| ! | GATAACAGGAAGCACGAAGA+CGG | - | chr1.1:11839189-11839208 | MS.gene31650:intron | 45.0% |
| ! | TCCGCATCTTTTACTTCGGA+TGG | - | chr1.1:11841022-11841041 | MS.gene31650:CDS | 45.0% |
| ! | TCTGACTTGTGAATCAGCAC+AGG | + | chr1.1:11840819-11840838 | None:intergenic | 45.0% |
| ! | TTACCAGCATGAGTTTGGTG+AGG | - | chr1.1:11839056-11839075 | MS.gene31650:intron | 45.0% |
| !! | AGAAGAACAGAAAGGCGTTG+AGG | + | chr1.1:11839894-11839913 | None:intergenic | 45.0% |
| !! | GCAGTATTTGCTGTCATCGT+CGG | - | chr1.1:11839791-11839810 | MS.gene31650:CDS | 45.0% |
| !! | GTAGCACCGGTACTTCATAT+TGG | - | chr1.1:11840347-11840366 | MS.gene31650:intron | 45.0% |
| !!! | GAGGGTTTGCTGAGAGATTT+TGG | - | chr1.1:11838664-11838683 | MS.gene31650:CDS | 45.0% |
| ACGCATCTGTTGCAGTACCT+TGG | - | chr1.1:11841161-11841180 | MS.gene31650:CDS | 50.0% | |
| ACTCCTCACCAAACTCATGC+TGG | + | chr1.1:11839062-11839081 | None:intergenic | 50.0% | |
| CGCATCTGTTGCAGTACCTT+GGG | - | chr1.1:11841162-11841181 | MS.gene31650:CDS | 50.0% | |
| CTACGCTCTCTAACACTACC+CGG | + | chr1.1:11838712-11838731 | None:intergenic | 50.0% | |
| GCATCTGTTGCAGTACCTTG+GGG | - | chr1.1:11841163-11841182 | MS.gene31650:CDS | 50.0% | |
| GCGATTGTGGCAAGTTGTTG+AGG | - | chr1.1:11839392-11839411 | MS.gene31650:intron | 50.0% | |
| GCTCCATGACAGGCAATTGT+CGG | - | chr1.1:11840258-11840277 | MS.gene31650:CDS | 50.0% | |
| GGACAGGTATGTTTGAGTCG+TGG | - | chr1.1:11839088-11839107 | MS.gene31650:intron | 50.0% | |
| GGAGGACCAGAATCAACTTC+AGG | + | chr1.1:11838637-11838656 | None:intergenic | 50.0% | |
| GGATCAAGGCATACAGCTTG+AGG | + | chr1.1:11841250-11841269 | None:intergenic | 50.0% | |
| GGCAAGTTGTTGAGGATGAG+AGG | - | chr1.1:11839400-11839419 | MS.gene31650:intron | 50.0% | |
| GGTCTAGTAATCGTGACTGC+TGG | - | chr1.1:11841451-11841470 | MS.gene31650:CDS | 50.0% | |
| GTTTGAAAAGAACCGCTCGC+AGG | + | chr1.1:11841143-11841162 | None:intergenic | 50.0% | |
| TCGCACAATTCCATCTTCGC+CGG | + | chr1.1:11839376-11839395 | None:intergenic | 50.0% | |
| TGAATCTGTGAACGCTGCTG+AGG | - | chr1.1:11839020-11839039 | MS.gene31650:CDS | 50.0% | |
| TGAATTGTGGACCAGGAGTC+CGG | - | chr1.1:11838690-11838709 | MS.gene31650:CDS | 50.0% | |
| TGATTCTGGTCCTCCTTTGG+TGG | - | chr1.1:11838642-11838661 | MS.gene31650:CDS | 50.0% | |
| TTGTCACCGCAGTGTGCTAT+CGG | - | chr1.1:11840128-11840147 | MS.gene31650:intron | 50.0% | |
| ! | AGTTTGGTGAGGAGTTCGAG+GGG | - | chr1.1:11839067-11839086 | MS.gene31650:intron | 50.0% |
| ! | GAGTTTGGTGAGGAGTTCGA+GGG | - | chr1.1:11839066-11839085 | MS.gene31650:intron | 50.0% |
| ! | TGAGTTTGGTGAGGAGTTCG+AGG | - | chr1.1:11839065-11839084 | MS.gene31650:intron | 50.0% |
| !! | GGGATTATTGGCTCCATGAC+AGG | - | chr1.1:11840248-11840267 | MS.gene31650:CDS | 50.0% |
| AGCAAACCCTCCACCAAAGG+AGG | + | chr1.1:11838655-11838674 | None:intergenic | 55.0% | |
| AGGTTCCGCAACTTATCCCG+AGG | - | chr1.1:11841321-11841340 | MS.gene31650:CDS | 55.0% | |
| ATCAGGCCGATAGCACACTG+CGG | + | chr1.1:11840137-11840156 | None:intergenic | 55.0% | |
| CTAGCAAGATACTGGCCGTC+CGG | + | chr1.1:11839351-11839370 | None:intergenic | 55.0% | |
| CTCAGCAAACCCTCCACCAA+AGG | + | chr1.1:11838658-11838677 | None:intergenic | 55.0% | |
| GAATTGTGGACCAGGAGTCC+GGG | - | chr1.1:11838691-11838710 | MS.gene31650:CDS | 55.0% | |
| GGCCAGTATCTTGCTAGTGC+CGG | - | chr1.1:11839354-11839373 | MS.gene31650:intron | 55.0% | |
| TCTAACACTACCCGGACTCC+TGG | + | chr1.1:11838704-11838723 | None:intergenic | 55.0% | |
| TCTGGTCCTCCTTTGGTGGA+GGG | - | chr1.1:11838646-11838665 | MS.gene31650:CDS | 55.0% | |
| TCTGTTGCAGTACCTTGGGG+TGG | - | chr1.1:11841166-11841185 | MS.gene31650:CDS | 55.0% | |
| TGTCGGACACTGACACAGGT+GGG | + | chr1.1:11840388-11840407 | None:intergenic | 55.0% | |
| TTCTGGTCCTCCTTTGGTGG+AGG | - | chr1.1:11838645-11838664 | MS.gene31650:CDS | 55.0% | |
| ! | ATCGTGACTGCTGGTTGGGA+TGG | - | chr1.1:11841460-11841479 | MS.gene31650:CDS | 55.0% |
| ! | CGGGTAGTGTTAGAGAGCGT+AGG | - | chr1.1:11838710-11838729 | MS.gene31650:CDS | 55.0% |
| ! | TCGTGACTGCTGGTTGGGAT+GGG | - | chr1.1:11841461-11841480 | MS.gene31650:CDS | 55.0% |
| CGCCGGCACTAGCAAGATAC+TGG | + | chr1.1:11839359-11839378 | None:intergenic | 60.0% | |
| GCAGTGTGCTATCGGCCTGA+TGG | - | chr1.1:11840136-11840155 | MS.gene31650:intron | 60.0% | |
| GTCGTGTCGGACACTGACAC+AGG | + | chr1.1:11840392-11840411 | None:intergenic | 60.0% | |
| GTGTCGGACACTGACACAGG+TGG | + | chr1.1:11840389-11840408 | None:intergenic | 60.0% | |
| ! | GTGCTATCGGCCTGATGGAC+AGG | - | chr1.1:11840141-11840160 | MS.gene31650:intron | 60.0% |
| !! | CTTGCTAGTGCCGGCGAAGA+TGG | - | chr1.1:11839363-11839382 | MS.gene31650:intron | 60.0% |
| GGTGAGGAGTTCGAGGGGAC+AGG | - | chr1.1:11839072-11839091 | MS.gene31650:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 11838544 | 11841528 | 11838544 | ID=MS.gene31650 |
| chr1.1 | mRNA | 11838544 | 11841528 | 11838544 | ID=MS.gene31650.t1;Parent=MS.gene31650 |
| chr1.1 | exon | 11840404 | 11841528 | 11840404 | ID=MS.gene31650.t1.exon1;Parent=MS.gene31650.t1 |
| chr1.1 | CDS | 11840404 | 11841528 | 11840404 | ID=cds.MS.gene31650.t1;Parent=MS.gene31650.t1 |
| chr1.1 | exon | 11840187 | 11840277 | 11840187 | ID=MS.gene31650.t1.exon2;Parent=MS.gene31650.t1 |
| chr1.1 | CDS | 11840187 | 11840277 | 11840187 | ID=cds.MS.gene31650.t1;Parent=MS.gene31650.t1 |
| chr1.1 | exon | 11839910 | 11840067 | 11839910 | ID=MS.gene31650.t1.exon3;Parent=MS.gene31650.t1 |
| chr1.1 | CDS | 11839910 | 11840067 | 11839910 | ID=cds.MS.gene31650.t1;Parent=MS.gene31650.t1 |
| chr1.1 | exon | 11839776 | 11839827 | 11839776 | ID=MS.gene31650.t1.exon4;Parent=MS.gene31650.t1 |
| chr1.1 | CDS | 11839776 | 11839827 | 11839776 | ID=cds.MS.gene31650.t1;Parent=MS.gene31650.t1 |
| chr1.1 | exon | 11839401 | 11839480 | 11839401 | ID=MS.gene31650.t1.exon5;Parent=MS.gene31650.t1 |
| chr1.1 | CDS | 11839401 | 11839480 | 11839401 | ID=cds.MS.gene31650.t1;Parent=MS.gene31650.t1 |
| chr1.1 | exon | 11839197 | 11839290 | 11839197 | ID=MS.gene31650.t1.exon6;Parent=MS.gene31650.t1 |
| chr1.1 | CDS | 11839197 | 11839290 | 11839197 | ID=cds.MS.gene31650.t1;Parent=MS.gene31650.t1 |
| chr1.1 | exon | 11838544 | 11839073 | 11838544 | ID=MS.gene31650.t1.exon7;Parent=MS.gene31650.t1 |
| chr1.1 | CDS | 11838544 | 11839073 | 11838544 | ID=cds.MS.gene31650.t1;Parent=MS.gene31650.t1 |
| Gene Sequence |
| Protein sequence |
