AlfalfaGEDB | MS.gene73327

M. sativa cultivar XinJiangDaYe / MS.gene73327

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73327.t1	XP_024641827.1	99.2	604	5	0	1	604	238	841	0.00E+00	1201

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73327.t1	A0A396HMI3	99.2	604	5	0	1	604	238	841	0.0e+00	1201.0

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene73327	0.831042	2.09E-55	-1.69E-46
MS.gene049341	MS.gene73327	0.801897	7.25E-49	-1.69E-46
MS.gene049350	MS.gene73327	0.84208	3.22E-58	-1.69E-46
MS.gene049404	MS.gene73327	0.813265	2.79E-51	-1.69E-46
MS.gene049711	MS.gene73327	0.841703	4.05E-58	-1.69E-46
MS.gene049821	MS.gene73327	0.821345	4.24E-53	-1.69E-46
MS.gene049850	MS.gene73327	0.816874	4.42E-52	-1.69E-46
MS.gene049887	MS.gene73327	0.811991	5.31E-51	-1.69E-46
MS.gene050020	MS.gene73327	0.828431	9.03E-55	-1.69E-46
MS.gene050241	MS.gene73327	0.807623	4.62E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene73327.t1	AT1G62870	59.106	604	217	7	1	601	183	759	0.0	723
MS.gene73327.t1	AT1G12380	58.279	616	221	6	1	601	196	790	0.0	723

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Find 117 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGATGATTTATGTGCAT+TGG	0.530765	6.4:-44135766	MS.gene73327:CDS
AAAAGGCGGTGTTTACCGGC+GGG	0.560565	6.4:-44135305	MS.gene73327:CDS
AAACAAAGAGATCCAGTCAC+TGG	0.567086	6.4:-44134331	MS.gene73327:CDS
AAAGGCGGTGTTTACCGGCG+GGG	0.650088	6.4:-44135304	MS.gene73327:CDS
AACGGATCACATTTCGGCGA+AGG	0.553597	6.4:+44134940	None:intergenic
AAGAAGTATTTACCATCCAA+TGG	0.543075	6.4:+44135142	None:intergenic
AAGAGTCCTAAGACTTCACC+TGG	0.630400	6.4:-44135714	MS.gene73327:CDS
AAGGCGGTGTTTACCGGCGG+GGG	0.493111	6.4:-44135303	MS.gene73327:CDS
AATAATGATAGGAGTTTGTA+TGG	0.354700	6.4:-44135396	MS.gene73327:CDS
AATACTTCTTGTCAGCTTCA+AGG	0.424656	6.4:-44135129	MS.gene73327:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTAGCTACTTGAAAAAACA+TGG	+	chr6.4:44134313-44134332	None:intergenic	30.0%
ATTTGGAGAATCAAAACCAT+TGG	-	chr6.4:44134610-44134629	MS.gene73327:CDS	30.0%
CATGTGGATTTAAGAGTAAT+TGG	-	chr6.4:44135573-44135592	MS.gene73327:CDS	30.0%
GATTATTAAAGGAATGGTTC+AGG	-	chr6.4:44135040-44135059	MS.gene73327:CDS	30.0%
GATTGTTGCTGATAAGTTTA+AGG	-	chr6.4:44134572-44134591	MS.gene73327:CDS	30.0%
GTGTCTTTAATCAAGTAAAG+TGG	+	chr6.4:44135245-44135264	None:intergenic	30.0%
TAATTATAGAATGCAGGAGA+TGG	-	chr6.4:44134782-44134801	MS.gene73327:CDS	30.0%
TACTTCTTTGAGTAAAGAAC+AGG	-	chr6.4:44134077-44134096	MS.gene73327:CDS	30.0%
TACTTGATTAAAGACACAAG+TGG	-	chr6.4:44135248-44135267	MS.gene73327:CDS	30.0%
TCGCTTGTGAAGATTATTAA+AGG	-	chr6.4:44135029-44135048	MS.gene73327:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	44133988	44135802	44133988	ID=MS.gene73327
chr6.4	mRNA	44133988	44135802	44133988	ID=MS.gene73327.t1;Parent=MS.gene73327
chr6.4	exon	44133988	44135802	44133988	ID=MS.gene73327.t1.exon1;Parent=MS.gene73327.t1
chr6.4	CDS	44133988	44135802	44133988	ID=cds.MS.gene73327.t1;Parent=MS.gene73327.t1

Gene Sequence

>MS.gene73327

ATGTTGTCTGGTGGAAAAGATGATTTATGTGCATTGGCTATGTTTGAAGATAGTGTGAAGAAGTTGAAGAGTCCTAAGACTTCACCTGGTACTTCTTTGAGTAAAGAACAGGTGAATTCTGCTTTGGATTTACTTGCTGATTGGTTTTATGAATGTTGTGGTTCTGTTTCTTTGTCAACAATTGAGCATAGAAAGTTTCAAGCTTTTCTTTCTCAAGTTGGTTTGCCTGTAGGAAGTTGTTTGAGACGCGAGGTTTCCGGTCCAAGGCTCGATGCTAGGTTTAATGAAGTTAAGAGTGAATCCGAGGCGAAAATTAGGGATGCCATGTTTTTTCAAGTAGCTAGTGATGGTTGGAAGAGTTATGGTAATAGTAGTAGTAATTATAATAATGATAGGAGTTTGTATGGTTTGTGTTGTGGTGGTGAGAGTTTGGTTAAGTTTATGGTGAATCTACCAAATGGGAGTAGTGTTTTTGAAAAGGCGGTGTTTACCGGCGGGGGAGTGGTGAATTCGAAGTATGCTGAGGAGGTTTTGTGGGAGACTGTGACTGGTGTTAGTGGTAGTGTTGTTCAAAGATGTGTAGGGATTGTTGCTGATAAGTTTAAGGCTAAGGCATTGAGGAATTTGGAGAATCAAAACCATTGGATGGTAAATACTTCTTGTCAGCTTCAAGGGTTTGTTAGTTTAATCAAGGATTTTAACAACGAGCTCGAACTTTTCGGTATTGTTACTAAGAATTGTCTTAAAGTTGCAAATTTTATAGACAATGAATCTCAGGTGAGGAATGTTTTTGTTAATTATAGAATGCAGGAGATGGAGTATGGCGGGTTGATTCGTGTGCCTTCGCCGAAATGTGATCCGTTGAAGAACTTTGCGTCCGTGTTTCCGATGCTTGAGGATATTTTGAGCTGTGCTAGAGTGATTCAAATGGTTGTGATGGAGGACGCGTTTAAGGCAATGTTCATGGAGGATCCAAATGCTAGAGAAGTGGCTGGAATGGTTCAGAATGAGGTGTTTTGGAACGAGGTTGAAGCGGTTTATTCGCTTGTGAAGATTATTAAAGGAATGGTTCAGGATATAGAGGCGGAGAGGCCGTTGATAGGTCGATGTTTGCCTCTTTGGGAGGAGATGAGAACCAAAGTGAAGGAGTGGTGTAGTAAATACAATGTCGTCGAAGGACCAGTGGAGAAAATACTCGAAAAACGGTTTCGAAAAAACTACCACCCTGCATGGTCAGCGGCATTTATACTCGATCCACTTTACTTGATTAAAGACACAAGTGGAAAATATCTCCCGCCATTCAAGTTTCTGACACGCGAACAAGAGAAAGACGTCGATAAGTTACTTACAAGACTAGCTTCGAGAGAAGAAGCTCATGTCGTTTTGATGGAGCTAATGAAATGGAGATCAGAAGGACTCGACCCTCTTTATGCGCAAGCCGTTCAGATGAAACAAAGAGATCCAGTCACTGGTAAGATGAAAGTCGCAAATCCTCTTAGTAGTCGACTTGTTTGGGAAACATGTTTGTGTGAGTTTAAATCTTTAGGGAAGATAGCGGTGAGGCTCATTTTTCTTCATGCAACTTCATGTGGATTTAAGAGTAATTGGTCTTTCATGAGAAAAGTTTCTGGAAACAAAAACTCTAGAGTTGCATTGGAAAGAGCTCAGAAAATGATATACATTGCAGCTCATGCAAAGCTTGAAAGAAGAGATTTTTCTAGCGAGGAAGAAAAAGACGCAGAATTGTTTTCCATTTCTGGAAGTGACGAAGATAGCATGCTAGCTGAAGTCTATGCCGATGCAATGCAATCTTAA

Protein sequence

>MS.gene73327.t1

MLSGGKDDLCALAMFEDSVKKLKSPKTSPGTSLSKEQVNSALDLLADWFYECCGSVSLSTIEHRKFQAFLSQVGLPVGSCLRREVSGPRLDARFNEVKSESEAKIRDAMFFQVASDGWKSYGNSSSNYNNDRSLYGLCCGGESLVKFMVNLPNGSSVFEKAVFTGGGVVNSKYAEEVLWETVTGVSGSVVQRCVGIVADKFKAKALRNLENQNHWMVNTSCQLQGFVSLIKDFNNELELFGIVTKNCLKVANFIDNESQVRNVFVNYRMQEMEYGGLIRVPSPKCDPLKNFASVFPMLEDILSCARVIQMVVMEDAFKAMFMEDPNAREVAGMVQNEVFWNEVEAVYSLVKIIKGMVQDIEAERPLIGRCLPLWEEMRTKVKEWCSKYNVVEGPVEKILEKRFRKNYHPAWSAAFILDPLYLIKDTSGKYLPPFKFLTREQEKDVDKLLTRLASREEAHVVLMELMKWRSEGLDPLYAQAVQMKQRDPVTGKMKVANPLSSRLVWETCLCEFKSLGKIAVRLIFLHATSCGFKSNWSFMRKVSGNKNSRVALERAQKMIYIAAHAKLERRDFSSEEEKDAELFSISGSDEDSMLAEVYADAMQS