Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54547.t1 | XP_024630955.1 | 96.8 | 709 | 23 | 0 | 1 | 709 | 1 | 709 | 0.00E+00 | 1346.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54547.t1 | Q9XSC3 | 30.7 | 417 | 269 | 9 | 209 | 616 | 459 | 864 | 2.5e-42 | 175.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54547.t1 | A0A396JHT0 | 96.8 | 709 | 23 | 0 | 1 | 709 | 1 | 709 | 0.0e+00 | 1346.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene54547 | 0.811516 | 6.73E-51 | -1.69E-46 |
| MS.gene049178 | MS.gene54547 | 0.800656 | 1.30E-48 | -1.69E-46 |
| MS.gene049208 | MS.gene54547 | 0.820684 | 6.02E-53 | -1.69E-46 |
| MS.gene049807 | MS.gene54547 | 0.808254 | 3.39E-50 | -1.69E-46 |
| MS.gene049887 | MS.gene54547 | 0.863955 | 1.72E-64 | -1.69E-46 |
| MS.gene050085 | MS.gene54547 | 0.80541 | 1.35E-49 | -1.69E-46 |
| MS.gene050551 | MS.gene54547 | 0.808346 | 3.24E-50 | -1.69E-46 |
| MS.gene050689 | MS.gene54547 | 0.800632 | 1.32E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene54547 | 0.815261 | 1.01E-51 | -1.69E-46 |
| MS.gene050838 | MS.gene54547 | 0.90044 | 7.31E-78 | -1.69E-46 |
| MS.gene051063 | MS.gene54547 | 0.8179 | 2.59E-52 | -1.69E-46 |
| MS.gene051102 | MS.gene54547 | 0.855887 | 4.67E-62 | -1.69E-46 |
| MS.gene051233 | MS.gene54547 | 0.815371 | 9.57E-52 | -1.69E-46 |
| MS.gene051234 | MS.gene54547 | 0.805188 | 1.51E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene54547 | 0.820058 | 8.38E-53 | -1.69E-46 |
| MS.gene051381 | MS.gene54547 | 0.810751 | 9.86E-51 | -1.69E-46 |
| MS.gene051642 | MS.gene54547 | 0.82143 | 4.05E-53 | -1.69E-46 |
| MS.gene051676 | MS.gene54547 | 0.818387 | 2.01E-52 | -1.69E-46 |
| MS.gene051724 | MS.gene54547 | 0.80073 | 1.26E-48 | -1.69E-46 |
| MS.gene051746 | MS.gene54547 | 0.81027 | 1.25E-50 | -1.69E-46 |
| MS.gene051748 | MS.gene54547 | 0.831999 | 1.21E-55 | -1.69E-46 |
| MS.gene051850 | MS.gene54547 | 0.80109 | 1.06E-48 | -1.69E-46 |
| MS.gene051885 | MS.gene54547 | 0.854707 | 1.03E-61 | -1.69E-46 |
| MS.gene051902 | MS.gene54547 | 0.820152 | 7.98E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene54547 | 0.801045 | 1.08E-48 | -1.69E-46 |
| MS.gene052072 | MS.gene54547 | 0.825713 | 4.04E-54 | -1.69E-46 |
| MS.gene052133 | MS.gene54547 | 0.813504 | 2.48E-51 | -1.69E-46 |
| MS.gene052242 | MS.gene54547 | -0.830374 | 3.04E-55 | -1.69E-46 |
| MS.gene052307 | MS.gene54547 | 0.838195 | 3.32E-57 | -1.69E-46 |
| MS.gene052335 | MS.gene54547 | 0.804716 | 1.89E-49 | -1.69E-46 |
| MS.gene052397 | MS.gene54547 | 0.815769 | 7.80E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene54547 | 0.841409 | 4.84E-58 | -1.69E-46 |
| MS.gene052732 | MS.gene54547 | 0.804272 | 2.34E-49 | -1.69E-46 |
| MS.gene052932 | MS.gene54547 | 0.814242 | 1.70E-51 | -1.69E-46 |
| MS.gene052947 | MS.gene54547 | 0.819485 | 1.13E-52 | -1.69E-46 |
| MS.gene053143 | MS.gene54547 | 0.820379 | 7.08E-53 | -1.69E-46 |
| MS.gene053167 | MS.gene54547 | 0.819423 | 1.17E-52 | -1.69E-46 |
| MS.gene053581 | MS.gene54547 | 0.844145 | 9.06E-59 | -1.69E-46 |
| MS.gene053786 | MS.gene54547 | 0.806543 | 7.82E-50 | -1.69E-46 |
| MS.gene05380 | MS.gene54547 | 0.815463 | 9.13E-52 | -1.69E-46 |
| MS.gene053952 | MS.gene54547 | 0.806121 | 9.59E-50 | -1.69E-46 |
| MS.gene055311 | MS.gene54547 | 0.843122 | 1.70E-58 | -1.69E-46 |
| MS.gene055313 | MS.gene54547 | 0.834375 | 3.11E-56 | -1.69E-46 |
| MS.gene055314 | MS.gene54547 | 0.848766 | 4.97E-60 | -1.69E-46 |
| MS.gene055424 | MS.gene54547 | 0.821661 | 3.59E-53 | -1.69E-46 |
| MS.gene055469 | MS.gene54547 | 0.845212 | 4.68E-59 | -1.69E-46 |
| MS.gene055513 | MS.gene54547 | 0.811076 | 8.39E-51 | -1.69E-46 |
| MS.gene055591 | MS.gene54547 | -0.801858 | 7.38E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene54547 | 0.82775 | 1.32E-54 | -1.69E-46 |
| MS.gene056043 | MS.gene54547 | -0.807205 | 5.66E-50 | -1.69E-46 |
| MS.gene056136 | MS.gene54547 | 0.816515 | 5.32E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene54547 | 0.825383 | 4.83E-54 | -1.69E-46 |
| MS.gene056308 | MS.gene54547 | 0.803847 | 2.87E-49 | -1.69E-46 |
| MS.gene056390 | MS.gene54547 | 0.821865 | 3.22E-53 | -1.69E-46 |
| MS.gene056432 | MS.gene54547 | 0.80619 | 9.28E-50 | -1.69E-46 |
| MS.gene056522 | MS.gene54547 | -0.807555 | 4.77E-50 | -1.69E-46 |
| MS.gene056764 | MS.gene54547 | 0.805354 | 1.39E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene54547 | 0.838016 | 3.69E-57 | -1.69E-46 |
| MS.gene057094 | MS.gene54547 | 0.84197 | 3.44E-58 | -1.69E-46 |
| MS.gene057234 | MS.gene54547 | 0.808656 | 2.78E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene54547 | -0.807886 | 4.06E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene54547 | 0.803503 | 3.38E-49 | -1.69E-46 |
| MS.gene058055 | MS.gene54547 | 0.801204 | 1.01E-48 | -1.69E-46 |
| MS.gene058074 | MS.gene54547 | 0.804593 | 2.01E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene54547 | 0.856149 | 3.91E-62 | -1.69E-46 |
| MS.gene058639 | MS.gene54547 | 0.862686 | 4.25E-64 | -1.69E-46 |
| MS.gene058758 | MS.gene54547 | 0.826109 | 3.25E-54 | -1.69E-46 |
| MS.gene05880 | MS.gene54547 | 0.801426 | 9.05E-49 | -1.69E-46 |
| MS.gene058852 | MS.gene54547 | 0.869072 | 4.07E-66 | -1.69E-46 |
| MS.gene058906 | MS.gene54547 | 0.810475 | 1.13E-50 | -1.69E-46 |
| MS.gene059171 | MS.gene54547 | 0.987943 | 4.05E-172 | -1.69E-46 |
| MS.gene059227 | MS.gene54547 | 0.814357 | 1.61E-51 | -1.69E-46 |
| MS.gene059713 | MS.gene54547 | 0.802827 | 4.66E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene54547 | 0.828905 | 6.93E-55 | -1.69E-46 |
| MS.gene060465 | MS.gene54547 | 0.801389 | 9.21E-49 | -1.69E-46 |
| MS.gene060869 | MS.gene54547 | 0.829022 | 6.49E-55 | -1.69E-46 |
| MS.gene060870 | MS.gene54547 | 0.803764 | 2.98E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene54547 | 0.843968 | 1.01E-58 | -1.69E-46 |
| MS.gene061100 | MS.gene54547 | 0.816832 | 4.51E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene070492 | MS.gene54547 | PPI |
| MS.gene003811 | MS.gene54547 | PPI |
| MS.gene016742 | MS.gene54547 | PPI |
| MS.gene070510 | MS.gene54547 | PPI |
| MS.gene81622 | MS.gene54547 | PPI |
| MS.gene016743 | MS.gene54547 | PPI |
| MS.gene37911 | MS.gene54547 | PPI |
| MS.gene057883 | MS.gene54547 | PPI |
| MS.gene54547 | MS.gene40671 | PPI |
| MS.gene54547 | MS.gene45734 | PPI |
| MS.gene54547 | MS.gene016758 | PPI |
| MS.gene54547 | MS.gene070511 | PPI |
| MS.gene81617 | MS.gene54547 | PPI |
| MS.gene057886 | MS.gene54547 | PPI |
| MS.gene070509 | MS.gene54547 | PPI |
| MS.gene54547 | MS.gene057884 | PPI |
| MS.gene070503 | MS.gene54547 | PPI |
| MS.gene81620 | MS.gene54547 | PPI |
| MS.gene070505 | MS.gene54547 | PPI |
| MS.gene54547 | MS.gene056653 | PPI |
| MS.gene81615 | MS.gene54547 | PPI |
| MS.gene54547 | MS.gene67840 | PPI |
| MS.gene070507 | MS.gene54547 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54547.t1 | MTR_1g007740 | 96.605 | 707 | 24 | 0 | 1 | 707 | 1 | 707 | 0.0 | 1412 |
| MS.gene54547.t1 | MTR_3g491920 | 62.534 | 726 | 227 | 14 | 1 | 707 | 1 | 700 | 0.0 | 857 |
| MS.gene54547.t1 | MTR_8g100005 | 45.254 | 727 | 350 | 12 | 8 | 707 | 7 | 712 | 0.0 | 581 |
| MS.gene54547.t1 | MTR_8g092890 | 36.176 | 680 | 333 | 16 | 50 | 709 | 47 | 645 | 4.81e-124 | 384 |
| MS.gene54547.t1 | MTR_2g079740 | 41.493 | 576 | 260 | 17 | 196 | 709 | 298 | 858 | 1.12e-122 | 387 |
| MS.gene54547.t1 | MTR_8g100005 | 44.016 | 493 | 234 | 10 | 8 | 474 | 7 | 483 | 5.32e-122 | 374 |
| MS.gene54547.t1 | MTR_3g095780 | 44.742 | 485 | 236 | 11 | 233 | 709 | 168 | 628 | 4.45e-120 | 373 |
| MS.gene54547.t1 | MTR_7g060420 | 46.917 | 373 | 187 | 6 | 234 | 595 | 392 | 764 | 2.87e-91 | 307 |
| MS.gene54547.t1 | MTR_1g072140 | 27.119 | 236 | 152 | 8 | 338 | 566 | 48 | 270 | 2.78e-17 | 84.0 |
| MS.gene54547.t1 | MTR_4g119620 | 26.482 | 253 | 152 | 9 | 251 | 487 | 19 | 253 | 3.82e-16 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54547.t1 | AT5G24320 | 48.767 | 730 | 293 | 20 | 10 | 707 | 12 | 692 | 0.0 | 611 |
| MS.gene54547.t1 | AT5G24320 | 48.774 | 734 | 291 | 21 | 10 | 707 | 12 | 696 | 0.0 | 610 |
| MS.gene54547.t1 | AT5G53500 | 48.801 | 709 | 293 | 17 | 6 | 707 | 7 | 652 | 0.0 | 596 |
| MS.gene54547.t1 | AT5G53500 | 48.801 | 709 | 293 | 17 | 6 | 707 | 7 | 652 | 0.0 | 596 |
| MS.gene54547.t1 | AT5G42010 | 49.074 | 540 | 236 | 14 | 186 | 707 | 189 | 707 | 7.17e-162 | 484 |
| MS.gene54547.t1 | AT1G64610 | 48.381 | 525 | 224 | 12 | 191 | 707 | 160 | 645 | 5.62e-158 | 471 |
| MS.gene54547.t1 | AT1G64610 | 48.381 | 525 | 224 | 12 | 191 | 707 | 160 | 645 | 5.62e-158 | 471 |
| MS.gene54547.t1 | AT5G42010 | 52.589 | 367 | 165 | 5 | 186 | 548 | 189 | 550 | 1.95e-127 | 390 |
| MS.gene54547.t1 | AT5G54200 | 44.467 | 497 | 250 | 11 | 232 | 709 | 336 | 825 | 2.26e-124 | 390 |
| MS.gene54547.t1 | AT3G15470 | 40.497 | 563 | 277 | 11 | 194 | 709 | 332 | 883 | 6.86e-120 | 380 |
| MS.gene54547.t1 | AT1G48870 | 39.666 | 479 | 228 | 12 | 231 | 706 | 170 | 590 | 1.85e-98 | 315 |
| MS.gene54547.t1 | AT1G48870 | 39.666 | 479 | 228 | 12 | 231 | 706 | 170 | 590 | 1.85e-98 | 315 |
| MS.gene54547.t1 | AT1G48870 | 39.666 | 479 | 228 | 12 | 231 | 706 | 170 | 590 | 1.85e-98 | 315 |
| MS.gene54547.t1 | AT5G02430 | 39.768 | 518 | 263 | 11 | 232 | 706 | 384 | 895 | 1.82e-96 | 318 |
| MS.gene54547.t1 | AT2G37670 | 39.539 | 521 | 261 | 12 | 234 | 706 | 380 | 894 | 8.40e-93 | 308 |
| MS.gene54547.t1 | AT2G37670 | 39.539 | 521 | 261 | 12 | 234 | 706 | 379 | 893 | 9.43e-93 | 308 |
| MS.gene54547.t1 | AT3G49660 | 24.224 | 322 | 171 | 11 | 253 | 567 | 18 | 273 | 1.38e-18 | 87.8 |
| MS.gene54547.t1 | AT2G16405 | 22.881 | 236 | 166 | 4 | 348 | 567 | 199 | 434 | 5.13e-12 | 69.3 |
Find 151 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATTGACACCCTTGTTTA+TGG | 0.143018 | 1.3:+11886313 | MS.gene54547:CDS |
| CTTATACAGGTAGGGATTAT+TGG | 0.170811 | 1.3:+11887061 | MS.gene54547:intron |
| GAGGGTTTGCTGAGAGATTT+TGG | 0.182081 | 1.3:+11885489 | MS.gene54547:CDS |
| TCCATGAATTCTTCAGAATT+TGG | 0.194639 | 1.3:+11885744 | MS.gene54547:CDS |
| AAGAGGAATAACCGGCTTTC+AGG | 0.207009 | 1.3:+11887461 | MS.gene54547:CDS |
| TACATCCTGTATTTACTTTA+CGG | 0.216260 | 1.3:+11886277 | MS.gene54547:CDS |
| TGGTCATGGAGGTGAAATTT+TGG | 0.235145 | 1.3:+11886448 | MS.gene54547:CDS |
| CTTGAGGTGACCTCTTATTT+AGG | 0.243028 | 1.3:-11888042 | None:intergenic |
| TTCTTTGTTTCTTGCATTGA+CGG | 0.263293 | 1.3:-11886076 | None:intergenic |
| GGAACTTTCAGCTCTTTATA+TGG | 0.266044 | 1.3:+11886100 | MS.gene54547:CDS |
| AAAGTGGATGGAATTGAGTT+TGG | 0.304155 | 1.3:+11885569 | MS.gene54547:CDS |
| GTGTTTCATTCTCTGGTTGT+AGG | 0.305208 | 1.3:+11886036 | MS.gene54547:CDS |
| TTCTTCAGAATTTGGTGCTT+TGG | 0.317391 | 1.3:+11885752 | MS.gene54547:CDS |
| TCCTAAGGTCTTCCGTTTGA+TGG | 0.319986 | 1.3:+11886403 | MS.gene54547:CDS |
| ATACAGGATGTATCAACTTC+TGG | 0.321898 | 1.3:-11886266 | None:intergenic |
| CGCATCTGTTGCAGTACCTT+GGG | 0.326050 | 1.3:+11887973 | MS.gene54547:CDS |
| GGATAAGTTGCGGAACCTTT+CGG | 0.326663 | 1.3:-11888127 | None:intergenic |
| TTGATAAAACTGTTCGTCTA+TGG | 0.334885 | 1.3:+11886639 | MS.gene54547:CDS |
| TTTGGATCAGTCAGTGGTTT+CGG | 0.338155 | 1.3:+11885821 | MS.gene54547:CDS |
| CTGATTGTCATGTTGTTGAT+TGG | 0.342478 | 1.3:+11886914 | MS.gene54547:CDS |
| CAATCACAACTATGCTTACT+TGG | 0.344066 | 1.3:+11887420 | MS.gene54547:CDS |
| GACAACCCTGAAGTTGATTC+TGG | 0.347739 | 1.3:+11885453 | MS.gene54547:CDS |
| TGGTGCTTTGGTGGAGAATT+CGG | 0.352335 | 1.3:+11885764 | MS.gene54547:CDS |
| ATAAAATCATTCCACAATTA+CGG | 0.355391 | 1.3:+11888298 | MS.gene54547:CDS |
| ACCAAATTCTGAAGAATTCA+TGG | 0.356917 | 1.3:-11885745 | None:intergenic |
| ACCAGTTACCAGCATGAGTT+TGG | 0.360497 | 1.3:+11885876 | MS.gene54547:CDS |
| TTCATTAGCGGATCAATAGA+TGG | 0.362082 | 1.3:+11886868 | MS.gene54547:CDS |
| GACACCCTTGTTTATGGATA+AGG | 0.363962 | 1.3:+11886319 | MS.gene54547:CDS |
| AGTTGATTCTGGTCCTCCTT+TGG | 0.373369 | 1.3:+11885464 | MS.gene54547:CDS |
| GGAGGACCAGAATCAACTTC+AGG | 0.378263 | 1.3:-11885459 | None:intergenic |
| AACCTTGAGAATTCGGTAGA+TGG | 0.380774 | 1.3:+11885600 | MS.gene54547:CDS |
| TAGATGGAAAAGTGCGCATA+TGG | 0.387508 | 1.3:+11886884 | MS.gene54547:CDS |
| TGATGGAGTGGAAGTAGGTT+TGG | 0.393251 | 1.3:+11885803 | MS.gene54547:CDS |
| ACCAAACTCATGCTGGTAAC+TGG | 0.395389 | 1.3:-11885877 | None:intergenic |
| GAACTTTCAGCTCTTTATAT+GGG | 0.405806 | 1.3:+11886101 | MS.gene54547:CDS |
| CTTGCTAGTGCCGGCGAAGA+TGG | 0.410754 | 1.3:+11886188 | MS.gene54547:CDS |
| GAAGACGGTGTTTCATTCTC+TGG | 0.423222 | 1.3:+11886029 | MS.gene54547:CDS |
| TTCTGGTCCTCCTTTGGTGG+AGG | 0.423302 | 1.3:+11885470 | MS.gene54547:CDS |
| TGAATTGTGGACCAGGAGTC+CGG | 0.426510 | 1.3:+11885515 | MS.gene54547:CDS |
| CGCCGGCACTAGCAAGATAC+TGG | 0.427472 | 1.3:-11886181 | None:intergenic |
| TGATTCTGGTCCTCCTTTGG+TGG | 0.429534 | 1.3:+11885467 | MS.gene54547:CDS |
| TTCAGAATTTGGTGCTTTGG+TGG | 0.430345 | 1.3:+11885755 | MS.gene54547:CDS |
| TCTTCTGGAAGAGGAATAAC+CGG | 0.432558 | 1.3:+11887453 | MS.gene54547:CDS |
| TCTGGTCCTCCTTTGGTGGA+GGG | 0.438960 | 1.3:+11885471 | MS.gene54547:CDS |
| AAACCACTTCATGAGTTTCA+TGG | 0.440737 | 1.3:+11886428 | MS.gene54547:CDS |
| AACAAGGAGAATCTGATAAC+AGG | 0.441398 | 1.3:+11886000 | MS.gene54547:CDS |
| TCCATCAAACGGAAGACCTT+AGG | 0.442471 | 1.3:-11886404 | None:intergenic |
| AGGAATGATGGAGTGGAAGT+AGG | 0.444491 | 1.3:+11885798 | MS.gene54547:CDS |
| AGAAATTATACCTGTCCATC+AGG | 0.448537 | 1.3:-11886976 | None:intergenic |
| TAGACCCCATGCATGACAAT+TGG | 0.455729 | 1.3:-11888245 | None:intergenic |
| TTGTAGGATTCAGCGAGTTA+AGG | 0.455745 | 1.3:+11886052 | MS.gene54547:CDS |
| AGTAATCGTGACTGCTGGTT+GGG | 0.456343 | 1.3:+11888267 | MS.gene54547:CDS |
| GTGCTATCGGCCTGATGGAC+AGG | 0.464270 | 1.3:+11886966 | MS.gene54547:CDS |
| AGAATTCGGCATGCGAAGAT+AGG | 0.469347 | 1.3:+11885778 | MS.gene54547:CDS |
| GGTGAGGAGTTCGAGGGGAC+AGG | 0.481217 | 1.3:+11885897 | MS.gene54547:CDS |
| ATTCACCGTAAAGTAAATAC+AGG | 0.481895 | 1.3:-11886282 | None:intergenic |
| GGGATTATTGGCTCCATGAC+AGG | 0.482718 | 1.3:+11887073 | MS.gene54547:CDS |
| CTTTACGGTGAATGATCTCT+CGG | 0.483120 | 1.3:+11886292 | MS.gene54547:CDS |
| TACTTCCAATTGTCATGCAT+GGG | 0.483434 | 1.3:+11888240 | MS.gene54547:CDS |
| CTTCATGAGTTTCATGGTCA+TGG | 0.484621 | 1.3:+11886434 | MS.gene54547:CDS |
| CAATCAACAACATGACAATC+AGG | 0.489078 | 1.3:-11886913 | None:intergenic |
| ATAACTTTGTTAAAATCTTG+TGG | 0.491780 | 1.3:-11887599 | None:intergenic |
| CTTTCATTTCAAAGGAGTAC+AGG | 0.491830 | 1.3:-11888325 | None:intergenic |
| GATGATGATTATTTCATTAG+CGG | 0.495396 | 1.3:+11886856 | MS.gene54547:CDS |
| ACGCATCTGTTGCAGTACCT+TGG | 0.499424 | 1.3:+11887972 | MS.gene54547:CDS |
| GCTCCATGACAGGCAATTGT+CGG | 0.502618 | 1.3:+11887083 | MS.gene54547:CDS |
| GCAGTATTTGCTGTCATCGT+CGG | 0.510836 | 1.3:+11886616 | MS.gene54547:intron |
| GAAGTAGGAAGTTTCTCCTC+GGG | 0.512166 | 1.3:-11888148 | None:intergenic |
| ATCGTGACTGCTGGTTGGGA+TGG | 0.512730 | 1.3:+11888271 | MS.gene54547:CDS |
| GAGGACCAGAATCAACTTCA+GGG | 0.513061 | 1.3:-11885458 | None:intergenic |
| TTGTCACCGCAGTGTGCTAT+CGG | 0.513075 | 1.3:+11886953 | MS.gene54547:CDS |
| CTAGCAAGATACTGGCCGTC+CGG | 0.518249 | 1.3:-11886173 | None:intergenic |
| AATTGGATGTCCTAAATAAG+AGG | 0.531200 | 1.3:+11888032 | MS.gene54547:CDS |
| TGAGTTTGGTGAGGAGTTCG+AGG | 0.532574 | 1.3:+11885890 | MS.gene54547:CDS |
| GAATTGTGGACCAGGAGTCC+GGG | 0.534742 | 1.3:+11885516 | MS.gene54547:CDS |
| GAGATTAATAGAATGAAAGA+TGG | 0.537127 | 1.3:+11885645 | MS.gene54547:CDS |
| TAGTAATCGTGACTGCTGGT+TGG | 0.539202 | 1.3:+11888266 | MS.gene54547:CDS |
| GCATGCGAAGATAGGAATGA+TGG | 0.541227 | 1.3:+11885786 | MS.gene54547:CDS |
| ATGAAATAATCATCATCCAC+AGG | 0.541795 | 1.3:-11886850 | None:intergenic |
| TCTAACACTACCCGGACTCC+TGG | 0.545596 | 1.3:-11885526 | None:intergenic |
| TTCCATCTACCGAATTCTCA+AGG | 0.548317 | 1.3:-11885602 | None:intergenic |
| TCACAAGTCAGAATCATTGA+AGG | 0.548563 | 1.3:+11887638 | MS.gene54547:CDS |
| GGCCAGTATCTTGCTAGTGC+CGG | 0.549193 | 1.3:+11886179 | MS.gene54547:CDS |
| GAAGTGGTTTCTCCATCAAA+CGG | 0.549389 | 1.3:-11886415 | None:intergenic |
| GAGTAAGTTTATAAAGTGGA+TGG | 0.549532 | 1.3:+11885557 | MS.gene54547:CDS |
| GCAGTGTGCTATCGGCCTGA+TGG | 0.550180 | 1.3:+11886961 | MS.gene54547:CDS |
| GTAGGAGTAAGTTTATAAAG+TGG | 0.551153 | 1.3:+11885553 | MS.gene54547:CDS |
| AAACCGACAATTGCCTGTCA+TGG | 0.552139 | 1.3:-11887086 | None:intergenic |
| GTACTTCCAATTGTCATGCA+TGG | 0.556893 | 1.3:+11888239 | MS.gene54547:CDS |
| TCGTGACTGCTGGTTGGGAT+GGG | 0.557894 | 1.3:+11888272 | MS.gene54547:CDS |
| TTACTCTTAGGGCTTGAAGT+AGG | 0.562824 | 1.3:-11888163 | None:intergenic |
| TGTGGAATGTTAGTGACGAC+GGG | 0.565541 | 1.3:+11887897 | MS.gene54547:CDS |
| AACTGTTCGTCTATGGCAAG+TGG | 0.567280 | 1.3:+11886646 | MS.gene54547:CDS |
| CTCAGCAAACCCTCCACCAA+AGG | 0.567962 | 1.3:-11885480 | None:intergenic |
| TTTATCCTTATCCATAAACA+AGG | 0.568961 | 1.3:-11886324 | None:intergenic |
| ACTCCTCACCAAACTCATGC+TGG | 0.572712 | 1.3:-11885884 | None:intergenic |
| TATTTGGATTCTATTCCGAA+AGG | 0.577615 | 1.3:+11888112 | MS.gene54547:CDS |
| CTGTGGAATGTTAGTGACGA+CGG | 0.578440 | 1.3:+11887896 | MS.gene54547:CDS |
| AAGATGGAATTGTGCGATTG+TGG | 0.579171 | 1.3:+11886204 | MS.gene54547:CDS |
| TTGGATATGAATTGTGGACC+AGG | 0.579478 | 1.3:+11885508 | MS.gene54547:CDS |
| TCAATGCAAGAAACAAAGAA+AGG | 0.579785 | 1.3:+11886079 | MS.gene54547:CDS |
| TGAAGTAGGAAGTTTCTCCT+CGG | 0.582779 | 1.3:-11888149 | None:intergenic |
| ATTAATAGAATGAAAGATGG+TGG | 0.583671 | 1.3:+11885648 | MS.gene54547:CDS |
| ATCAAACGGAAGACCTTAGG+AGG | 0.585403 | 1.3:-11886401 | None:intergenic |
| GTGTCAATCTCAGATGCAAA+TGG | 0.586470 | 1.3:+11885423 | MS.gene54547:CDS |
| ATATACATTTGAGTCTTCAC+AGG | 0.587540 | 1.3:-11887873 | None:intergenic |
| GAATAAGAAGCACAATGGCT+AGG | 0.588859 | 1.3:+11885355 | None:intergenic |
| AGATGGAAAAGTGCGCATAT+GGG | 0.590347 | 1.3:+11886885 | MS.gene54547:CDS |
| CTACGCTCTCTAACACTACC+CGG | 0.590841 | 1.3:-11885534 | None:intergenic |
| GCGATTGTGGCAAGTTGTTG+AGG | 0.591064 | 1.3:+11886217 | MS.gene54547:CDS |
| CACAAGTCAGAATCATTGAA+GGG | 0.591839 | 1.3:+11887639 | MS.gene54547:CDS |
| CGGGTAGTGTTAGAGAGCGT+AGG | 0.595315 | 1.3:+11885535 | MS.gene54547:CDS |
| TCTGTTGCAGTACCTTGGGG+TGG | 0.600067 | 1.3:+11887977 | MS.gene54547:CDS |
| GTTTGAGTCGTGGACAAAGA+GGG | 0.600126 | 1.3:+11885923 | MS.gene54547:CDS |
| TTTCTCCTCGGGATAAGTTG+CGG | 0.600952 | 1.3:-11888137 | None:intergenic |
| GGATCAAGGCATACAGCTTG+AGG | 0.601512 | 1.3:-11888058 | None:intergenic |
| TCTGACTTGTGAATCAGCAC+AGG | 0.603387 | 1.3:-11887627 | None:intergenic |
| TCGCACAATTCCATCTTCGC+CGG | 0.604000 | 1.3:-11886198 | None:intergenic |
| GTACAGGTAATCCGTAATTG+TGG | 0.604825 | 1.3:-11888309 | None:intergenic |
| AGTAGGTTTGGATCAGTCAG+TGG | 0.606958 | 1.3:+11885815 | MS.gene54547:CDS |
| AGCAAACCCTCCACCAAAGG+AGG | 0.608011 | 1.3:-11885477 | None:intergenic |
| GGTCTAGTAATCGTGACTGC+TGG | 0.608692 | 1.3:+11888262 | MS.gene54547:CDS |
| TGACCATGAAACTCATGAAG+TGG | 0.609680 | 1.3:-11886431 | None:intergenic |
| GTTTGAAAAGAACCGCTCGC+AGG | 0.610721 | 1.3:-11887951 | None:intergenic |
| GAGTTTGGTGAGGAGTTCGA+GGG | 0.610769 | 1.3:+11885891 | MS.gene54547:CDS |
| GCGTTCAATGACATGCATGA+TGG | 0.613983 | 1.3:+11885971 | MS.gene54547:CDS |
| TGAATCTGTGAACGCTGCTG+AGG | 0.618609 | 1.3:+11885845 | MS.gene54547:CDS |
| ACTATGAAATTTAGTCCGGA+CGG | 0.619533 | 1.3:+11886158 | MS.gene54547:CDS |
| TGTTTGAGTCGTGGACAAAG+AGG | 0.619572 | 1.3:+11885922 | MS.gene54547:CDS |
| GATAACAGGAAGCACGAAGA+CGG | 0.624901 | 1.3:+11886014 | MS.gene54547:CDS |
| TTATCCTTATCCATAAACAA+GGG | 0.630847 | 1.3:-11886323 | None:intergenic |
| CGAAGATAGGAATGATGGAG+TGG | 0.631147 | 1.3:+11885791 | MS.gene54547:CDS |
| TCCATCCGAAGTAAAAGATG+CGG | 0.632163 | 1.3:-11887834 | None:intergenic |
| AAGACTCAAATGTATATCTG+TGG | 0.633398 | 1.3:+11887879 | MS.gene54547:CDS |
| GGACAGGTATGTTTGAGTCG+TGG | 0.645058 | 1.3:+11885913 | MS.gene54547:CDS |
| GGCAAGTTGTTGAGGATGAG+AGG | 0.647793 | 1.3:+11886225 | MS.gene54547:CDS |
| TGTTGATTGGACTGATGTCA+AGG | 0.649634 | 1.3:+11886927 | MS.gene54547:CDS |
| TCAGATTTCAAACCACCCCA+AGG | 0.650854 | 1.3:-11887989 | None:intergenic |
| ATGCATACAATTCAATCCTG+TGG | 0.653407 | 1.3:+11886834 | MS.gene54547:CDS |
| ACTGTTCGTCTATGGCAAGT+GGG | 0.654097 | 1.3:+11886647 | MS.gene54547:CDS |
| GCATCTGTTGCAGTACCTTG+GGG | 0.656255 | 1.3:+11887974 | MS.gene54547:CDS |
| TTACCAGCATGAGTTTGGTG+AGG | 0.658249 | 1.3:+11885881 | MS.gene54547:CDS |
| CATGAGTTTCATGGTCATGG+AGG | 0.673674 | 1.3:+11886437 | MS.gene54547:CDS |
| AGTAGTGTGAGCAAAAGTCA+TGG | 0.676316 | 1.3:+11885672 | MS.gene54547:CDS |
| AGGTTCCGCAACTTATCCCG+AGG | 0.678766 | 1.3:+11888132 | MS.gene54547:CDS |
| ACTTCCAATTGTCATGCATG+GGG | 0.679789 | 1.3:+11888241 | MS.gene54547:CDS |
| CAAGATATTCAAGCGCACGA+AGG | 0.706142 | 1.3:+11886125 | MS.gene54547:CDS |
| AGTTTGGTGAGGAGTTCGAG+GGG | 0.707819 | 1.3:+11885892 | MS.gene54547:CDS |
| TGCATGATGGATGTACAACA+AGG | 0.718046 | 1.3:+11885984 | MS.gene54547:CDS |
| AGAAGATTAAGTCCTGCGAG+CGG | 0.742727 | 1.3:+11887939 | MS.gene54547:CDS |
| ATCAGGCCGATAGCACACTG+CGG | 0.805171 | 1.3:-11886959 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAATCAATTAATTAACTA+CGG | - | chr1.3:11887563-11887582 | None:intergenic | 10.0% |
| !! | CTAAATTTCATAGTAAAAAT+TGG | - | chr1.3:11886152-11886171 | None:intergenic | 15.0% |
| !! | TTCAAAATTCTATGAAAAAT+TGG | + | chr1.3:11886558-11886577 | MS.gene54547:intron | 15.0% |
| !!! | AGAAAATTGAATTTTTGAAT+CGG | - | chr1.3:11887230-11887249 | None:intergenic | 15.0% |
| !!! | CATTGAAAATTCTAAAAAAT+TGG | + | chr1.3:11888015-11888034 | MS.gene54547:CDS | 15.0% |
| !! | AAAAGTCAAATTAGATAGAT+AGG | - | chr1.3:11887743-11887762 | None:intergenic | 20.0% |
| !! | ATAAAATCATTCCACAATTA+CGG | + | chr1.3:11888298-11888317 | MS.gene54547:CDS | 20.0% |
| !! | ATAACTTTGTTAAAATCTTG+TGG | - | chr1.3:11887602-11887621 | None:intergenic | 20.0% |
| !! | TAATTTCTTTACATTTCCTT+CGG | + | chr1.3:11886991-11887010 | MS.gene54547:intron | 20.0% |
| !! | TAGAATCCAAATAAAAATCT+TGG | - | chr1.3:11888105-11888124 | None:intergenic | 20.0% |
| !! | TGAAAAATTGGAAATTGATT+TGG | + | chr1.3:11886570-11886589 | MS.gene54547:intron | 20.0% |
| !!! | AAATTTGTTTTGTGAAAAGA+GGG | + | chr1.3:11887338-11887357 | MS.gene54547:intron | 20.0% |
| !!! | ACAAGATTTTAACAAAGTTA+TGG | + | chr1.3:11887601-11887620 | MS.gene54547:CDS | 20.0% |
| !!! | CAATTTTCTCAAACTATTAT+CGG | + | chr1.3:11887241-11887260 | MS.gene54547:intron | 20.0% |
| !!! | TTTTACTATGAAATTTAGTC+CGG | + | chr1.3:11886154-11886173 | MS.gene54547:CDS | 20.0% |
| ! | AAAAGACAACAGAACTTAAT+TGG | - | chr1.3:11887518-11887537 | None:intergenic | 25.0% |
| ! | AATACATAAGAAGAACAGAA+AGG | - | chr1.3:11886727-11886746 | None:intergenic | 25.0% |
| ! | AATGTCGTTGAAAAATTCAA+AGG | + | chr1.3:11887665-11887684 | MS.gene54547:CDS | 25.0% |
| ! | ATTAATAGAATGAAAGATGG+TGG | + | chr1.3:11885648-11885667 | MS.gene54547:CDS | 25.0% |
| ! | GAACTTAATTGGTGTAAAAA+AGG | - | chr1.3:11887507-11887526 | None:intergenic | 25.0% |
| ! | GAGATTAATAGAATGAAAGA+TGG | + | chr1.3:11885645-11885664 | MS.gene54547:CDS | 25.0% |
| ! | GATGATGATTATTTCATTAG+CGG | + | chr1.3:11886856-11886875 | MS.gene54547:CDS | 25.0% |
| ! | TACATCCTGTATTTACTTTA+CGG | + | chr1.3:11886277-11886296 | MS.gene54547:CDS | 25.0% |
| ! | TTATCCTTATCCATAAACAA+GGG | - | chr1.3:11886326-11886345 | None:intergenic | 25.0% |
| ! | TTTATCCTTATCCATAAACA+AGG | - | chr1.3:11886327-11886346 | None:intergenic | 25.0% |
| !! | TCTAAGCCAAGATTTTTATT+TGG | + | chr1.3:11888096-11888115 | MS.gene54547:CDS | 25.0% |
| !! | TGAATTTGTTTACCTTATAC+AGG | + | chr1.3:11887048-11887067 | MS.gene54547:intron | 25.0% |
| !!! | AGTGAAGATTTTTTACTCTT+AGG | - | chr1.3:11888178-11888197 | None:intergenic | 25.0% |
| !!! | CAAATTTGTTTTGTGAAAAG+AGG | + | chr1.3:11887337-11887356 | MS.gene54547:intron | 25.0% |
| !!! | CATTTCATGTTTTAAGTCTA+AGG | + | chr1.3:11887768-11887787 | MS.gene54547:intron | 25.0% |
| !!! | GTGAAGATTTTTTACTCTTA+GGG | - | chr1.3:11888177-11888196 | None:intergenic | 25.0% |
| !!! | TTAGCTTTAACTTCTTGTTT+TGG | + | chr1.3:11886754-11886773 | MS.gene54547:intron | 25.0% |
| AAAAAACAATACCTGAAAGC+CGG | - | chr1.3:11887475-11887494 | None:intergenic | 30.0% | |
| AAGACTCAAATGTATATCTG+TGG | + | chr1.3:11887879-11887898 | MS.gene54547:CDS | 30.0% | |
| AATTGGATGTCCTAAATAAG+AGG | + | chr1.3:11888032-11888051 | MS.gene54547:CDS | 30.0% | |
| AGGATTTCTATATTGTTGTC+AGG | + | chr1.3:11887788-11887807 | MS.gene54547:intron | 30.0% | |
| ATATACATTTGAGTCTTCAC+AGG | - | chr1.3:11887876-11887895 | None:intergenic | 30.0% | |
| ATGAAATAATCATCATCCAC+AGG | - | chr1.3:11886853-11886872 | None:intergenic | 30.0% | |
| ATTCACCGTAAAGTAAATAC+AGG | - | chr1.3:11886285-11886304 | None:intergenic | 30.0% | |
| CTTGGTAAAAAGAAATCTTC+TGG | + | chr1.3:11887438-11887457 | MS.gene54547:CDS | 30.0% | |
| GAACCAAAACCTTATAAAGT+GGG | - | chr1.3:11887705-11887724 | None:intergenic | 30.0% | |
| GAACTTTCAGCTCTTTATAT+GGG | + | chr1.3:11886101-11886120 | MS.gene54547:CDS | 30.0% | |
| GAGTAAGTTTATAAAGTGGA+TGG | + | chr1.3:11885557-11885576 | MS.gene54547:CDS | 30.0% | |
| GGAAGAAATGAAGATTCTAT+GGG | + | chr1.3:11887012-11887031 | MS.gene54547:intron | 30.0% | |
| GGATTTCTATATTGTTGTCA+GGG | + | chr1.3:11887789-11887808 | MS.gene54547:intron | 30.0% | |
| GTAGGAGTAAGTTTATAAAG+TGG | + | chr1.3:11885553-11885572 | MS.gene54547:CDS | 30.0% | |
| TATTTGGATTCTATTCCGAA+AGG | + | chr1.3:11888112-11888131 | MS.gene54547:CDS | 30.0% | |
| TCAATGCAAGAAACAAAGAA+AGG | + | chr1.3:11886079-11886098 | MS.gene54547:CDS | 30.0% | |
| TCAGAAAAACCTTGAGAATT+CGG | + | chr1.3:11885593-11885612 | MS.gene54547:CDS | 30.0% | |
| TCCATGAATTCTTCAGAATT+TGG | + | chr1.3:11885744-11885763 | MS.gene54547:CDS | 30.0% | |
| TGAACCAAAACCTTATAAAG+TGG | - | chr1.3:11887706-11887725 | None:intergenic | 30.0% | |
| TTGATAAAACTGTTCGTCTA+TGG | + | chr1.3:11886639-11886658 | MS.gene54547:CDS | 30.0% | |
| TTGTTTACCTTATACAGGTA+GGG | + | chr1.3:11887053-11887072 | MS.gene54547:intron | 30.0% | |
| TTTGTTTACCTTATACAGGT+AGG | + | chr1.3:11887052-11887071 | MS.gene54547:intron | 30.0% | |
| ! | AAAAAGAAATCTTCTGGAAG+AGG | + | chr1.3:11887444-11887463 | MS.gene54547:CDS | 30.0% |
| ! | AAAGAGGGATAATAACTTGT+TGG | + | chr1.3:11887353-11887372 | MS.gene54547:intron | 30.0% |
| ! | ACCAAATTCTGAAGAATTCA+TGG | - | chr1.3:11885748-11885767 | None:intergenic | 30.0% |
| ! | GAGATTTTGGATATGAATTG+TGG | + | chr1.3:11885502-11885521 | MS.gene54547:CDS | 30.0% |
| ! | TTCTTTGTTTCTTGCATTGA+CGG | - | chr1.3:11886079-11886098 | None:intergenic | 30.0% |
| !! | AAGAGGGATAATAACTTGTT+GGG | + | chr1.3:11887354-11887373 | MS.gene54547:intron | 30.0% |
| !! | CTTAATCTTCTTAGCTTTTG+TGG | - | chr1.3:11887930-11887949 | None:intergenic | 30.0% |
| !! | TGAATCTGATGTCTTTTTCA+GGG | - | chr1.3:11886366-11886385 | None:intergenic | 30.0% |
| AAACCACTTCATGAGTTTCA+TGG | + | chr1.3:11886428-11886447 | MS.gene54547:CDS | 35.0% | |
| AAAGTGGATGGAATTGAGTT+TGG | + | chr1.3:11885569-11885588 | MS.gene54547:CDS | 35.0% | |
| AACAAGGAGAATCTGATAAC+AGG | + | chr1.3:11886000-11886019 | MS.gene54547:CDS | 35.0% | |
| ACTATGAAATTTAGTCCGGA+CGG | + | chr1.3:11886158-11886177 | MS.gene54547:CDS | 35.0% | |
| AGAAATTATACCTGTCCATC+AGG | - | chr1.3:11886979-11886998 | None:intergenic | 35.0% | |
| AGAATCTTCATTTCTTCCGA+AGG | - | chr1.3:11887010-11887029 | None:intergenic | 35.0% | |
| ATACAGGATGTATCAACTTC+TGG | - | chr1.3:11886269-11886288 | None:intergenic | 35.0% | |
| ATGCATACAATTCAATCCTG+TGG | + | chr1.3:11886834-11886853 | MS.gene54547:CDS | 35.0% | |
| CAAAGAGGGTTAAAAAGAGT+TGG | + | chr1.3:11885937-11885956 | MS.gene54547:CDS | 35.0% | |
| CAATAATCCCTACCTGTATA+AGG | - | chr1.3:11887063-11887082 | None:intergenic | 35.0% | |
| CAATCAACAACATGACAATC+AGG | - | chr1.3:11886916-11886935 | None:intergenic | 35.0% | |
| CAATCACAACTATGCTTACT+TGG | + | chr1.3:11887420-11887439 | MS.gene54547:CDS | 35.0% | |
| CACAAGTCAGAATCATTGAA+GGG | + | chr1.3:11887639-11887658 | MS.gene54547:CDS | 35.0% | |
| CGGAAGAAATGAAGATTCTA+TGG | + | chr1.3:11887011-11887030 | MS.gene54547:intron | 35.0% | |
| CTGATTGTCATGTTGTTGAT+TGG | + | chr1.3:11886914-11886933 | MS.gene54547:CDS | 35.0% | |
| CTTAGAGAAAAAGAAGATGG+TGG | - | chr1.3:11888082-11888101 | None:intergenic | 35.0% | |
| CTTATACAGGTAGGGATTAT+TGG | + | chr1.3:11887061-11887080 | MS.gene54547:intron | 35.0% | |
| GAAAAAGATGCTTCGATCTT+TGG | - | chr1.3:11887541-11887560 | None:intergenic | 35.0% | |
| GGAACTTTCAGCTCTTTATA+TGG | + | chr1.3:11886100-11886119 | MS.gene54547:CDS | 35.0% | |
| TACTTCCAATTGTCATGCAT+GGG | + | chr1.3:11888240-11888259 | MS.gene54547:CDS | 35.0% | |
| TCACAAGTCAGAATCATTGA+AGG | + | chr1.3:11887638-11887657 | MS.gene54547:CDS | 35.0% | |
| TGGCTTAGAGAAAAAGAAGA+TGG | - | chr1.3:11888085-11888104 | None:intergenic | 35.0% | |
| TTTATCTGCATATGTAGCAC+CGG | + | chr1.3:11887159-11887178 | MS.gene54547:intron | 35.0% | |
| ! | AATGTCCGCATCTTTTACTT+CGG | + | chr1.3:11887829-11887848 | MS.gene54547:CDS | 35.0% |
| ! | ATTTGAAGCACTTGCTAAAC+TGG | - | chr1.3:11887322-11887341 | None:intergenic | 35.0% |
| ! | CTGAATCTGATGTCTTTTTC+AGG | - | chr1.3:11886367-11886386 | None:intergenic | 35.0% |
| ! | GTGAAATTTTGGATCTCTCT+TGG | + | chr1.3:11886459-11886478 | MS.gene54547:CDS | 35.0% |
| ! | GTTTTCTCACACAGTAACTA+TGG | + | chr1.3:11886689-11886708 | MS.gene54547:CDS | 35.0% |
| ! | TTCATTAGCGGATCAATAGA+TGG | + | chr1.3:11886868-11886887 | MS.gene54547:CDS | 35.0% |
| !! | AAAAAGAAGATGGTGGATCA+AGG | - | chr1.3:11888075-11888094 | None:intergenic | 35.0% |
| !! | AACTATTATCGGTGTCAACA+TGG | + | chr1.3:11887252-11887271 | MS.gene54547:intron | 35.0% |
| !! | GAGCAAAAGTCATGGTTTTA+TGG | + | chr1.3:11885680-11885699 | MS.gene54547:CDS | 35.0% |
| !! | TTCTTCAGAATTTGGTGCTT+TGG | + | chr1.3:11885752-11885771 | MS.gene54547:CDS | 35.0% |
| !! | TTGCATCATTTTTCCTCCTA+AGG | + | chr1.3:11886388-11886407 | MS.gene54547:CDS | 35.0% |
| !!! | CAAAAGTCATGGTTTTATGG+AGG | + | chr1.3:11885683-11885702 | MS.gene54547:CDS | 35.0% |
| !!! | GTTGGGTTTGCTTTTGTTTT+TGG | + | chr1.3:11887371-11887390 | MS.gene54547:intron | 35.0% |
| !!! | TGGAGGATTTCTTTTCAAGT+CGG | + | chr1.3:11885700-11885719 | MS.gene54547:CDS | 35.0% |
| !!! | TGTCGGTTTTACAATGTATC+AGG | + | chr1.3:11887100-11887119 | MS.gene54547:CDS | 35.0% |
| AACCTTGAGAATTCGGTAGA+TGG | + | chr1.3:11885600-11885619 | MS.gene54547:CDS | 40.0% | |
| AAGATGGAATTGTGCGATTG+TGG | + | chr1.3:11886204-11886223 | MS.gene54547:CDS | 40.0% | |
| ACGCATCCAATATGAAGTAC+CGG | - | chr1.3:11887181-11887200 | None:intergenic | 40.0% | |
| ACTTCCAATTGTCATGCATG+GGG | + | chr1.3:11888241-11888260 | MS.gene54547:CDS | 40.0% | |
| AGTAGTGTGAGCAAAAGTCA+TGG | + | chr1.3:11885672-11885691 | MS.gene54547:CDS | 40.0% | |
| CTTCATGAGTTTCATGGTCA+TGG | + | chr1.3:11886434-11886453 | MS.gene54547:CDS | 40.0% | |
| CTTTACGGTGAATGATCTCT+CGG | + | chr1.3:11886292-11886311 | MS.gene54547:CDS | 40.0% | |
| GAAGTGGTTTCTCCATCAAA+CGG | - | chr1.3:11886418-11886437 | None:intergenic | 40.0% | |
| GTACAGGTAATCCGTAATTG+TGG | - | chr1.3:11888312-11888331 | None:intergenic | 40.0% | |
| GTACTTCCAATTGTCATGCA+TGG | + | chr1.3:11888239-11888258 | MS.gene54547:CDS | 40.0% | |
| GTGTCAATCTCAGATGCAAA+TGG | + | chr1.3:11885423-11885442 | MS.gene54547:CDS | 40.0% | |
| GTGTTTCATTCTCTGGTTGT+AGG | + | chr1.3:11886036-11886055 | MS.gene54547:CDS | 40.0% | |
| TCCATCCGAAGTAAAAGATG+CGG | - | chr1.3:11887837-11887856 | None:intergenic | 40.0% | |
| TGAAGTAGGAAGTTTCTCCT+CGG | - | chr1.3:11888152-11888171 | None:intergenic | 40.0% | |
| TGACCATGAAACTCATGAAG+TGG | - | chr1.3:11886434-11886453 | None:intergenic | 40.0% | |
| TGTTTCGCTCCCACTTTATA+AGG | + | chr1.3:11887693-11887712 | MS.gene54547:intron | 40.0% | |
| TTACTCTTAGGGCTTGAAGT+AGG | - | chr1.3:11888166-11888185 | None:intergenic | 40.0% | |
| TTCAACTTACGTATCGTGTC+TGG | + | chr1.3:11887279-11887298 | MS.gene54547:intron | 40.0% | |
| TTCCATCTACCGAATTCTCA+AGG | - | chr1.3:11885605-11885624 | None:intergenic | 40.0% | |
| TTGGATATGAATTGTGGACC+AGG | + | chr1.3:11885508-11885527 | MS.gene54547:CDS | 40.0% | |
| TTGTAGGATTCAGCGAGTTA+AGG | + | chr1.3:11886052-11886071 | MS.gene54547:CDS | 40.0% | |
| TTTGGATCAGTCAGTGGTTT+CGG | + | chr1.3:11885821-11885840 | MS.gene54547:CDS | 40.0% | |
| ! | AGATGGAAAAGTGCGCATAT+GGG | + | chr1.3:11886885-11886904 | MS.gene54547:CDS | 40.0% |
| ! | CTTGAGGTGACCTCTTATTT+AGG | - | chr1.3:11888045-11888064 | None:intergenic | 40.0% |
| ! | GACACCCTTGTTTATGGATA+AGG | + | chr1.3:11886319-11886338 | MS.gene54547:CDS | 40.0% |
| ! | GCTCCCACTTTATAAGGTTT+TGG | + | chr1.3:11887699-11887718 | MS.gene54547:intron | 40.0% |
| ! | GGAATTGACACCCTTGTTTA+TGG | + | chr1.3:11886313-11886332 | MS.gene54547:CDS | 40.0% |
| ! | GGTGCTACATATGCAGATAA+AGG | - | chr1.3:11887160-11887179 | None:intergenic | 40.0% |
| ! | TAGATGGAAAAGTGCGCATA+TGG | + | chr1.3:11886884-11886903 | MS.gene54547:CDS | 40.0% |
| ! | TCTTCTGGAAGAGGAATAAC+CGG | + | chr1.3:11887453-11887472 | MS.gene54547:CDS | 40.0% |
| ! | TGGTCATGGAGGTGAAATTT+TGG | + | chr1.3:11886448-11886467 | MS.gene54547:CDS | 40.0% |
| ! | TGTTGATTGGACTGATGTCA+AGG | + | chr1.3:11886927-11886946 | MS.gene54547:CDS | 40.0% |
| !! | TGCATGATGGATGTACAACA+AGG | + | chr1.3:11885984-11886003 | MS.gene54547:CDS | 40.0% |
| !! | TTCAGAATTTGGTGCTTTGG+TGG | + | chr1.3:11885755-11885774 | MS.gene54547:CDS | 40.0% |
| AAACCGACAATTGCCTGTCA+TGG | - | chr1.3:11887089-11887108 | None:intergenic | 45.0% | |
| AACTGTTCGTCTATGGCAAG+TGG | + | chr1.3:11886646-11886665 | MS.gene54547:CDS | 45.0% | |
| ACCAAACTCATGCTGGTAAC+TGG | - | chr1.3:11885880-11885899 | None:intergenic | 45.0% | |
| ACCAGTTACCAGCATGAGTT+TGG | + | chr1.3:11885876-11885895 | MS.gene54547:CDS | 45.0% | |
| ACTGTTCGTCTATGGCAAGT+GGG | + | chr1.3:11886647-11886666 | MS.gene54547:CDS | 45.0% | |
| AGAAGATTAAGTCCTGCGAG+CGG | + | chr1.3:11887939-11887958 | MS.gene54547:CDS | 45.0% | |
| AGAATTCGGCATGCGAAGAT+AGG | + | chr1.3:11885778-11885797 | MS.gene54547:CDS | 45.0% | |
| AGTAGGTTTGGATCAGTCAG+TGG | + | chr1.3:11885815-11885834 | MS.gene54547:CDS | 45.0% | |
| ATCAAACGGAAGACCTTAGG+AGG | - | chr1.3:11886404-11886423 | None:intergenic | 45.0% | |
| CAAGATATTCAAGCGCACGA+AGG | + | chr1.3:11886125-11886144 | MS.gene54547:CDS | 45.0% | |
| CATGAGTTTCATGGTCATGG+AGG | + | chr1.3:11886437-11886456 | MS.gene54547:CDS | 45.0% | |
| CTGTGGAATGTTAGTGACGA+CGG | + | chr1.3:11887896-11887915 | MS.gene54547:CDS | 45.0% | |
| GAAGACGGTGTTTCATTCTC+TGG | + | chr1.3:11886029-11886048 | MS.gene54547:CDS | 45.0% | |
| GAAGTAGGAAGTTTCTCCTC+GGG | - | chr1.3:11888151-11888170 | None:intergenic | 45.0% | |
| GAGGACCAGAATCAACTTCA+GGG | - | chr1.3:11885461-11885480 | None:intergenic | 45.0% | |
| GCATGCGAAGATAGGAATGA+TGG | + | chr1.3:11885786-11885805 | MS.gene54547:CDS | 45.0% | |
| GCGTTCAATGACATGCATGA+TGG | + | chr1.3:11885971-11885990 | MS.gene54547:CDS | 45.0% | |
| GGATAAGTTGCGGAACCTTT+CGG | - | chr1.3:11888130-11888149 | None:intergenic | 45.0% | |
| GTTTGAGTCGTGGACAAAGA+GGG | + | chr1.3:11885923-11885942 | MS.gene54547:CDS | 45.0% | |
| TAGACCCCATGCATGACAAT+TGG | - | chr1.3:11888248-11888267 | None:intergenic | 45.0% | |
| TAGTAATCGTGACTGCTGGT+TGG | + | chr1.3:11888266-11888285 | MS.gene54547:CDS | 45.0% | |
| TCAGATTTCAAACCACCCCA+AGG | - | chr1.3:11887992-11888011 | None:intergenic | 45.0% | |
| TCCATCAAACGGAAGACCTT+AGG | - | chr1.3:11886407-11886426 | None:intergenic | 45.0% | |
| TCCTAAGGTCTTCCGTTTGA+TGG | + | chr1.3:11886403-11886422 | MS.gene54547:CDS | 45.0% | |
| TGATGGAGTGGAAGTAGGTT+TGG | + | chr1.3:11885803-11885822 | MS.gene54547:CDS | 45.0% | |
| TGGTGCTTTGGTGGAGAATT+CGG | + | chr1.3:11885764-11885783 | MS.gene54547:CDS | 45.0% | |
| TGTGGAATGTTAGTGACGAC+GGG | + | chr1.3:11887897-11887916 | MS.gene54547:CDS | 45.0% | |
| TGTTTGAGTCGTGGACAAAG+AGG | + | chr1.3:11885922-11885941 | MS.gene54547:CDS | 45.0% | |
| TTTCTCCTCGGGATAAGTTG+CGG | - | chr1.3:11888140-11888159 | None:intergenic | 45.0% | |
| TTTGAATCGGACACTGACAC+AGG | - | chr1.3:11887217-11887236 | None:intergenic | 45.0% | |
| ! | AAGAGGAATAACCGGCTTTC+AGG | + | chr1.3:11887461-11887480 | MS.gene54547:CDS | 45.0% |
| ! | AGGAATGATGGAGTGGAAGT+AGG | + | chr1.3:11885798-11885817 | MS.gene54547:CDS | 45.0% |
| ! | AGTAATCGTGACTGCTGGTT+GGG | + | chr1.3:11888267-11888286 | MS.gene54547:CDS | 45.0% |
| ! | AGTTGATTCTGGTCCTCCTT+TGG | + | chr1.3:11885464-11885483 | MS.gene54547:CDS | 45.0% |
| ! | CGAAGATAGGAATGATGGAG+TGG | + | chr1.3:11885791-11885810 | MS.gene54547:CDS | 45.0% |
| ! | GACAACCCTGAAGTTGATTC+TGG | + | chr1.3:11885453-11885472 | MS.gene54547:CDS | 45.0% |
| ! | GATAACAGGAAGCACGAAGA+CGG | + | chr1.3:11886014-11886033 | MS.gene54547:CDS | 45.0% |
| ! | TCCGCATCTTTTACTTCGGA+TGG | + | chr1.3:11887833-11887852 | MS.gene54547:CDS | 45.0% |
| ! | TCTGACTTGTGAATCAGCAC+AGG | - | chr1.3:11887630-11887649 | None:intergenic | 45.0% |
| ! | TTACCAGCATGAGTTTGGTG+AGG | + | chr1.3:11885881-11885900 | MS.gene54547:CDS | 45.0% |
| !! | AGAAGAACAGAAAGGCGTTG+AGG | - | chr1.3:11886719-11886738 | None:intergenic | 45.0% |
| !! | GCAGTATTTGCTGTCATCGT+CGG | + | chr1.3:11886616-11886635 | MS.gene54547:intron | 45.0% |
| !! | GTAGCACCGGTACTTCATAT+TGG | + | chr1.3:11887172-11887191 | MS.gene54547:intron | 45.0% |
| !!! | GAGGGTTTGCTGAGAGATTT+TGG | + | chr1.3:11885489-11885508 | MS.gene54547:CDS | 45.0% |
| AATCGGACACTGACACAGGT+GGG | - | chr1.3:11887213-11887232 | None:intergenic | 50.0% | |
| ACGCATCTGTTGCAGTACCT+TGG | + | chr1.3:11887972-11887991 | MS.gene54547:CDS | 50.0% | |
| ACTCCTCACCAAACTCATGC+TGG | - | chr1.3:11885887-11885906 | None:intergenic | 50.0% | |
| CGCATCTGTTGCAGTACCTT+GGG | + | chr1.3:11887973-11887992 | MS.gene54547:CDS | 50.0% | |
| CTACGCTCTCTAACACTACC+CGG | - | chr1.3:11885537-11885556 | None:intergenic | 50.0% | |
| GCATCTGTTGCAGTACCTTG+GGG | + | chr1.3:11887974-11887993 | MS.gene54547:CDS | 50.0% | |
| GCGATTGTGGCAAGTTGTTG+AGG | + | chr1.3:11886217-11886236 | MS.gene54547:CDS | 50.0% | |
| GCTCCATGACAGGCAATTGT+CGG | + | chr1.3:11887083-11887102 | MS.gene54547:CDS | 50.0% | |
| GGACAGGTATGTTTGAGTCG+TGG | + | chr1.3:11885913-11885932 | MS.gene54547:CDS | 50.0% | |
| GGAGGACCAGAATCAACTTC+AGG | - | chr1.3:11885462-11885481 | None:intergenic | 50.0% | |
| GGATCAAGGCATACAGCTTG+AGG | - | chr1.3:11888061-11888080 | None:intergenic | 50.0% | |
| GGCAAGTTGTTGAGGATGAG+AGG | + | chr1.3:11886225-11886244 | MS.gene54547:CDS | 50.0% | |
| GGTCTAGTAATCGTGACTGC+TGG | + | chr1.3:11888262-11888281 | MS.gene54547:CDS | 50.0% | |
| GTTTGAAAAGAACCGCTCGC+AGG | - | chr1.3:11887954-11887973 | None:intergenic | 50.0% | |
| TCGCACAATTCCATCTTCGC+CGG | - | chr1.3:11886201-11886220 | None:intergenic | 50.0% | |
| TGAATCTGTGAACGCTGCTG+AGG | + | chr1.3:11885845-11885864 | MS.gene54547:CDS | 50.0% | |
| TGAATTGTGGACCAGGAGTC+CGG | + | chr1.3:11885515-11885534 | MS.gene54547:CDS | 50.0% | |
| TGATTCTGGTCCTCCTTTGG+TGG | + | chr1.3:11885467-11885486 | MS.gene54547:CDS | 50.0% | |
| TTGTCACCGCAGTGTGCTAT+CGG | + | chr1.3:11886953-11886972 | MS.gene54547:CDS | 50.0% | |
| ! | AGTTTGGTGAGGAGTTCGAG+GGG | + | chr1.3:11885892-11885911 | MS.gene54547:CDS | 50.0% |
| ! | GAGTTTGGTGAGGAGTTCGA+GGG | + | chr1.3:11885891-11885910 | MS.gene54547:CDS | 50.0% |
| ! | TGAGTTTGGTGAGGAGTTCG+AGG | + | chr1.3:11885890-11885909 | MS.gene54547:CDS | 50.0% |
| !! | GGGATTATTGGCTCCATGAC+AGG | + | chr1.3:11887073-11887092 | MS.gene54547:CDS | 50.0% |
| AGCAAACCCTCCACCAAAGG+AGG | - | chr1.3:11885480-11885499 | None:intergenic | 55.0% | |
| AGGTTCCGCAACTTATCCCG+AGG | + | chr1.3:11888132-11888151 | MS.gene54547:CDS | 55.0% | |
| ATCAGGCCGATAGCACACTG+CGG | - | chr1.3:11886962-11886981 | None:intergenic | 55.0% | |
| CTAGCAAGATACTGGCCGTC+CGG | - | chr1.3:11886176-11886195 | None:intergenic | 55.0% | |
| CTCAGCAAACCCTCCACCAA+AGG | - | chr1.3:11885483-11885502 | None:intergenic | 55.0% | |
| GAATCGGACACTGACACAGG+TGG | - | chr1.3:11887214-11887233 | None:intergenic | 55.0% | |
| GAATTGTGGACCAGGAGTCC+GGG | + | chr1.3:11885516-11885535 | MS.gene54547:CDS | 55.0% | |
| GGCCAGTATCTTGCTAGTGC+CGG | + | chr1.3:11886179-11886198 | MS.gene54547:CDS | 55.0% | |
| TCTAACACTACCCGGACTCC+TGG | - | chr1.3:11885529-11885548 | None:intergenic | 55.0% | |
| TCTGGTCCTCCTTTGGTGGA+GGG | + | chr1.3:11885471-11885490 | MS.gene54547:CDS | 55.0% | |
| TCTGTTGCAGTACCTTGGGG+TGG | + | chr1.3:11887977-11887996 | MS.gene54547:CDS | 55.0% | |
| TTCTGGTCCTCCTTTGGTGG+AGG | + | chr1.3:11885470-11885489 | MS.gene54547:CDS | 55.0% | |
| ! | ATCGTGACTGCTGGTTGGGA+TGG | + | chr1.3:11888271-11888290 | MS.gene54547:CDS | 55.0% |
| ! | CGGGTAGTGTTAGAGAGCGT+AGG | + | chr1.3:11885535-11885554 | MS.gene54547:CDS | 55.0% |
| ! | TCGTGACTGCTGGTTGGGAT+GGG | + | chr1.3:11888272-11888291 | MS.gene54547:CDS | 55.0% |
| CGCCGGCACTAGCAAGATAC+TGG | - | chr1.3:11886184-11886203 | None:intergenic | 60.0% | |
| GCAGTGTGCTATCGGCCTGA+TGG | + | chr1.3:11886961-11886980 | MS.gene54547:CDS | 60.0% | |
| ! | GTGCTATCGGCCTGATGGAC+AGG | + | chr1.3:11886966-11886985 | MS.gene54547:CDS | 60.0% |
| !! | CTTGCTAGTGCCGGCGAAGA+TGG | + | chr1.3:11886188-11886207 | MS.gene54547:CDS | 60.0% |
| GGTGAGGAGTTCGAGGGGAC+AGG | + | chr1.3:11885897-11885916 | MS.gene54547:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 11885369 | 11888339 | 11885369 | ID=MS.gene54547 |
| chr1.3 | mRNA | 11885369 | 11888339 | 11885369 | ID=MS.gene54547.t1;Parent=MS.gene54547 |
| chr1.3 | exon | 11885369 | 11886493 | 11885369 | ID=MS.gene54547.t1.exon1;Parent=MS.gene54547.t1 |
| chr1.3 | CDS | 11885369 | 11886493 | 11885369 | ID=cds.MS.gene54547.t1;Parent=MS.gene54547.t1 |
| chr1.3 | exon | 11886620 | 11886710 | 11886620 | ID=MS.gene54547.t1.exon2;Parent=MS.gene54547.t1 |
| chr1.3 | CDS | 11886620 | 11886710 | 11886620 | ID=cds.MS.gene54547.t1;Parent=MS.gene54547.t1 |
| chr1.3 | exon | 11886830 | 11886987 | 11886830 | ID=MS.gene54547.t1.exon3;Parent=MS.gene54547.t1 |
| chr1.3 | CDS | 11886830 | 11886987 | 11886830 | ID=cds.MS.gene54547.t1;Parent=MS.gene54547.t1 |
| chr1.3 | exon | 11887070 | 11887121 | 11887070 | ID=MS.gene54547.t1.exon4;Parent=MS.gene54547.t1 |
| chr1.3 | CDS | 11887070 | 11887121 | 11887070 | ID=cds.MS.gene54547.t1;Parent=MS.gene54547.t1 |
| chr1.3 | exon | 11887403 | 11887482 | 11887403 | ID=MS.gene54547.t1.exon5;Parent=MS.gene54547.t1 |
| chr1.3 | CDS | 11887403 | 11887482 | 11887403 | ID=cds.MS.gene54547.t1;Parent=MS.gene54547.t1 |
| chr1.3 | exon | 11887593 | 11887686 | 11887593 | ID=MS.gene54547.t1.exon6;Parent=MS.gene54547.t1 |
| chr1.3 | CDS | 11887593 | 11887686 | 11887593 | ID=cds.MS.gene54547.t1;Parent=MS.gene54547.t1 |
| chr1.3 | exon | 11887810 | 11888339 | 11887810 | ID=MS.gene54547.t1.exon7;Parent=MS.gene54547.t1 |
| chr1.3 | CDS | 11887810 | 11888339 | 11887810 | ID=cds.MS.gene54547.t1;Parent=MS.gene54547.t1 |
| Gene Sequence |
| Protein sequence |
