Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27814.t1 | XP_003629789.1 | 91 | 310 | 28 | 0 | 1 | 310 | 1 | 310 | 8.00E-162 | 579.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27814.t1 | G7LJG0 | 91.0 | 310 | 28 | 0 | 1 | 310 | 1 | 310 | 5.8e-162 | 579.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene27814 | 0.817552 | 3.11E-52 | -1.69E-46 |
| MS.gene049341 | MS.gene27814 | 0.804525 | 2.07E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene27814 | 0.823592 | 1.28E-53 | -1.69E-46 |
| MS.gene049887 | MS.gene27814 | 0.838086 | 3.54E-57 | -1.69E-46 |
| MS.gene050807 | MS.gene27814 | 0.841654 | 4.17E-58 | -1.69E-46 |
| MS.gene050808 | MS.gene27814 | 0.80257 | 5.27E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene27814 | 0.833502 | 5.14E-56 | -1.69E-46 |
| MS.gene051102 | MS.gene27814 | 0.824231 | 9.03E-54 | -1.69E-46 |
| MS.gene051247 | MS.gene27814 | 0.81195 | 5.42E-51 | -1.69E-46 |
| MS.gene051687 | MS.gene27814 | 0.806366 | 8.52E-50 | -1.69E-46 |
| MS.gene051700 | MS.gene27814 | 0.829037 | 6.44E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene27814 | 0.804141 | 2.49E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene27814 | 0.820619 | 6.23E-53 | -1.69E-46 |
| MS.gene051885 | MS.gene27814 | 0.818052 | 2.40E-52 | -1.69E-46 |
| MS.gene052133 | MS.gene27814 | 0.838308 | 3.11E-57 | -1.69E-46 |
| MS.gene052609 | MS.gene27814 | 0.809157 | 2.17E-50 | -1.69E-46 |
| MS.gene052665 | MS.gene27814 | 0.813079 | 3.07E-51 | -1.69E-46 |
| MS.gene052732 | MS.gene27814 | 0.819041 | 1.43E-52 | -1.69E-46 |
| MS.gene052858 | MS.gene27814 | 0.804567 | 2.03E-49 | -1.69E-46 |
| MS.gene052860 | MS.gene27814 | 0.800393 | 1.47E-48 | -1.69E-46 |
| MS.gene052947 | MS.gene27814 | 0.803557 | 3.29E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene27814 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene053144 | MS.gene27814 | 0.826816 | 2.20E-54 | -1.69E-46 |
| MS.gene053563 | MS.gene27814 | 0.824162 | 9.37E-54 | -1.69E-46 |
| MS.gene053581 | MS.gene27814 | 0.846817 | 1.71E-59 | -1.69E-46 |
| MS.gene054139 | MS.gene27814 | 0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene054584 | MS.gene27814 | 0.819042 | 1.43E-52 | -1.69E-46 |
| MS.gene055313 | MS.gene27814 | 0.804782 | 1.83E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene27814 | 0.837102 | 6.34E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene27814 | 0.821256 | 4.45E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene27814 | 0.835209 | 1.92E-56 | -1.69E-46 |
| MS.gene055469 | MS.gene27814 | 0.833121 | 6.40E-56 | -1.69E-46 |
| MS.gene055537 | MS.gene27814 | 0.809983 | 1.44E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene27814 | -0.809844 | 1.55E-50 | -1.69E-46 |
| MS.gene056005 | MS.gene27814 | 0.814593 | 1.42E-51 | -1.69E-46 |
| MS.gene056043 | MS.gene27814 | -0.817427 | 3.32E-52 | -1.69E-46 |
| MS.gene056136 | MS.gene27814 | 0.823217 | 1.56E-53 | -1.69E-46 |
| MS.gene056308 | MS.gene27814 | 0.831928 | 1.26E-55 | -1.69E-46 |
| MS.gene058330 | MS.gene27814 | 0.802141 | 6.46E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene27814 | 0.80321 | 3.89E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene27814 | 0.818236 | 2.18E-52 | -1.69E-46 |
| MS.gene058639 | MS.gene27814 | 0.827309 | 1.68E-54 | -1.69E-46 |
| MS.gene058852 | MS.gene27814 | 0.983636 | 2.75E-158 | -1.69E-46 |
| MS.gene059171 | MS.gene27814 | 0.860565 | 1.89E-63 | -1.69E-46 |
| MS.gene059227 | MS.gene27814 | 0.811754 | 5.98E-51 | -1.69E-46 |
| MS.gene059713 | MS.gene27814 | 0.802432 | 5.63E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene27814 | 0.820637 | 6.17E-53 | -1.69E-46 |
| MS.gene06001 | MS.gene27814 | 0.803552 | 3.30E-49 | -1.69E-46 |
| MS.gene060127 | MS.gene27814 | 0.801595 | 8.36E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene27814 | 0.810476 | 1.13E-50 | -1.69E-46 |
| MS.gene060637 | MS.gene27814 | 0.803781 | 2.96E-49 | -1.69E-46 |
| MS.gene061006 | MS.gene27814 | 0.823982 | 1.03E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene27814 | 0.812405 | 4.31E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27814.t1 | MTR_8g086550 | 90.968 | 310 | 28 | 0 | 1 | 310 | 1 | 310 | 0.0 | 579 |
| MS.gene27814.t1 | MTR_4g086500 | 89.677 | 310 | 32 | 0 | 1 | 310 | 1 | 310 | 0.0 | 573 |
| MS.gene27814.t1 | MTR_2g016520 | 54.785 | 303 | 104 | 7 | 11 | 310 | 11 | 283 | 1.89e-100 | 296 |
| MS.gene27814.t1 | MTR_8g086580 | 46.701 | 197 | 45 | 5 | 50 | 238 | 3 | 147 | 2.78e-40 | 138 |
| MS.gene27814.t1 | MTR_3g069730 | 32.589 | 224 | 132 | 6 | 93 | 309 | 4 | 215 | 7.25e-27 | 105 |
| MS.gene27814.t1 | MTR_5g081560 | 39.416 | 137 | 66 | 3 | 178 | 309 | 85 | 209 | 5.10e-26 | 102 |
| MS.gene27814.t1 | MTR_7g065920 | 39.007 | 141 | 61 | 4 | 178 | 309 | 108 | 232 | 5.89e-23 | 95.5 |
| MS.gene27814.t1 | MTR_3g069760 | 43.529 | 85 | 42 | 1 | 181 | 265 | 72 | 150 | 1.64e-15 | 73.9 |
| MS.gene27814.t1 | MTR_4g113230 | 69.565 | 46 | 14 | 0 | 187 | 232 | 26 | 71 | 1.73e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene27814.t1 | AT5G05830 | 38.710 | 155 | 77 | 5 | 161 | 309 | 59 | 201 | 2.04e-25 | 101 |
| MS.gene27814.t1 | AT2G34200 | 47.328 | 131 | 51 | 5 | 178 | 306 | 99 | 213 | 2.62e-24 | 98.6 |
| MS.gene27814.t1 | AT2G34200 | 47.328 | 131 | 51 | 5 | 178 | 306 | 99 | 213 | 2.62e-24 | 98.6 |
| MS.gene27814.t1 | AT5G59000 | 44.554 | 101 | 56 | 0 | 210 | 310 | 130 | 230 | 1.25e-22 | 94.4 |
| MS.gene27814.t1 | AT5G01070 | 39.860 | 143 | 60 | 6 | 178 | 309 | 75 | 202 | 8.69e-22 | 91.7 |
| MS.gene27814.t1 | AT2G37950 | 32.847 | 137 | 73 | 3 | 178 | 309 | 81 | 203 | 3.86e-19 | 84.3 |
Find 83 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTACTGGTAATGCATTTA+TGG | 0.196515 | 4.1:-13580939 | MS.gene27814:CDS |
| CTAGTTATAATTCGCTTAAT+CGG | 0.291790 | 4.1:-13582352 | MS.gene27814:CDS |
| AGGATTTGCCATCTGGCCTC+TGG | 0.305376 | 4.1:-13582098 | MS.gene27814:CDS |
| CTGGGCATAGTTTGGGTGAT+AGG | 0.306649 | 4.1:-13582532 | MS.gene27814:CDS |
| AGGAGAAAGCTTTAGAGGTT+AGG | 0.311670 | 4.1:-13582439 | MS.gene27814:CDS |
| GAAGCTAAAACTAATGAATC+AGG | 0.315323 | 4.1:-13582248 | MS.gene27814:CDS |
| GGAGAAAGCTTTAGAGGTTA+GGG | 0.319543 | 4.1:-13582438 | MS.gene27814:CDS |
| ATGCTGGATCAACTTGATAA+AGG | 0.324942 | 4.1:-13582608 | MS.gene27814:CDS |
| TGCTGGATCAACTTGATAAA+GGG | 0.326636 | 4.1:-13582607 | MS.gene27814:CDS |
| GGTAAAGGAGAAAGCTTTAG+AGG | 0.329153 | 4.1:-13582444 | MS.gene27814:CDS |
| GAGGCATGGTTCAAGATTAA+AGG | 0.350624 | 4.1:-13581957 | MS.gene27814:CDS |
| TGATGGAGATAATAGAAAAT+TGG | 0.357965 | 4.1:-13582270 | MS.gene27814:CDS |
| TGCAGGAACTGGGCATAGTT+TGG | 0.361951 | 4.1:-13582540 | MS.gene27814:CDS |
| TGTGGCACCTGCGAAGGTTT+TGG | 0.368290 | 4.1:-13582149 | MS.gene27814:CDS |
| TGAATGATGAAATGATTTGT+AGG | 0.371903 | 4.1:-13582118 | MS.gene27814:CDS |
| GCCATTCTGTAACTTCTTGA+TGG | 0.380363 | 4.1:-13580840 | MS.gene27814:CDS |
| TCGGTCTCAGACACCCCTTT+TGG | 0.388585 | 4.1:+13582200 | None:intergenic |
| GTTGCAACTGATGCAGGAAC+TGG | 0.393282 | 4.1:-13582551 | MS.gene27814:CDS |
| TGATGAGAATTTGAGTCATT+TGG | 0.393618 | 4.1:-13582582 | MS.gene27814:CDS |
| CCCGCAGGTTGGTTGGATGC+TGG | 0.398747 | 4.1:-13580871 | MS.gene27814:CDS |
| GATTTGTAGGATTTGCCATC+TGG | 0.398866 | 4.1:-13582105 | MS.gene27814:CDS |
| TGGTACTTGTGTAATGGATC+AGG | 0.403604 | 4.1:-13582654 | None:intergenic |
| CCGTTAGAAGCAACTGTTGT+TGG | 0.413223 | 4.1:-13582071 | MS.gene27814:CDS |
| TAACTTCTTGATGGTGTGTC+TGG | 0.415676 | 4.1:-13580831 | MS.gene27814:CDS |
| GTTGAACATGTCACTGTTGA+TGG | 0.423656 | 4.1:-13582287 | MS.gene27814:CDS |
| GGTTCAAGATTAAAGGAAAC+AGG | 0.425638 | 4.1:-13581950 | MS.gene27814:intron |
| TAGTTATAATTCGCTTAATC+GGG | 0.430272 | 4.1:-13582351 | MS.gene27814:CDS |
| TTAACGATAAAAGCACCAAA+AGG | 0.457676 | 4.1:-13582215 | MS.gene27814:CDS |
| GGTGATAGGGTTAGTGTATC+CGG | 0.463072 | 4.1:-13582518 | MS.gene27814:CDS |
| GGTTGGTTGGATGCTGGCGC+GGG | 0.463273 | 4.1:-13580865 | MS.gene27814:CDS |
| ACAGCCATTGCGCTGAGGCA+TGG | 0.464024 | 4.1:-13581971 | MS.gene27814:CDS |
| TTAGTGTATCCGGTGAAGAT+TGG | 0.472343 | 4.1:-13582508 | MS.gene27814:CDS |
| AATTTGAGTCATTTGGTTGA+AGG | 0.473198 | 4.1:-13582575 | MS.gene27814:CDS |
| AGTACAGGTTTGATTATGCT+TGG | 0.474501 | 4.1:-13582026 | MS.gene27814:CDS |
| CCAGCATCCAACCAACCTGC+GGG | 0.478894 | 4.1:+13580871 | None:intergenic |
| AATATTGCTGATAAAAGTAC+AGG | 0.482540 | 4.1:-13582041 | MS.gene27814:CDS |
| TAACGATAAAAGCACCAAAA+GGG | 0.488566 | 4.1:-13582214 | MS.gene27814:CDS |
| GAAGGAGTTGCAACTGATGC+AGG | 0.489326 | 4.1:-13582557 | MS.gene27814:CDS |
| TGGGCATAGTTTGGGTGATA+GGG | 0.493652 | 4.1:-13582531 | MS.gene27814:CDS |
| GCAGGAACTGGGCATAGTTT+GGG | 0.497517 | 4.1:-13582539 | MS.gene27814:CDS |
| TAAAGGTGGTAATGAAATGC+TGG | 0.499770 | 4.1:-13582624 | MS.gene27814:CDS |
| TGTATTGAATGAGGAGGTAA+AGG | 0.501793 | 4.1:-13582459 | MS.gene27814:CDS |
| GGATTTGCCATCTGGCCTCT+GGG | 0.503004 | 4.1:-13582097 | MS.gene27814:CDS |
| AACTCACCCCGCAGGTTGGT+TGG | 0.522488 | 4.1:-13580878 | MS.gene27814:CDS |
| ATGGATCAGGGAACAAGTAA+AGG | 0.526969 | 4.1:-13582641 | MS.gene27814:CDS |
| ATGGAAGAATGGTGTGAAAG+TGG | 0.529176 | 4.1:-13580920 | MS.gene27814:CDS |
| AAACCGACTATGAATTGCAT+AGG | 0.530176 | 4.1:-13582388 | MS.gene27814:CDS |
| GAATTGCATAGGGTTGATCA+AGG | 0.540287 | 4.1:-13582377 | MS.gene27814:CDS |
| ATCCGGTGAAGATTGGAGTT+CGG | 0.541824 | 4.1:-13582501 | MS.gene27814:CDS |
| AGGTTGGTTGGATGCTGGCG+CGG | 0.542202 | 4.1:-13580866 | MS.gene27814:CDS |
| TTCCGAACTCCAATCTTCAC+CGG | 0.558500 | 4.1:+13582499 | None:intergenic |
| GAGGTTAGGGGTCAGAACAT+TGG | 0.564935 | 4.1:-13582425 | MS.gene27814:CDS |
| GTAATGCATTTATGGAAGAA+TGG | 0.567751 | 4.1:-13580931 | MS.gene27814:CDS |
| AACCCTATGCAATTCATAGT+CGG | 0.573395 | 4.1:+13582385 | None:intergenic |
| TGAACCATGCCTCAGCGCAA+TGG | 0.575958 | 4.1:+13581967 | None:intergenic |
| GCTGGATCAACTTGATAAAG+GGG | 0.578516 | 4.1:-13582606 | MS.gene27814:CDS |
| ACGGTTGCCCAGAGGCCAGA+TGG | 0.580864 | 4.1:+13582090 | None:intergenic |
| TTGCAACTGATGCAGGAACT+GGG | 0.581538 | 4.1:-13582550 | MS.gene27814:CDS |
| AACCGACTATGAATTGCATA+GGG | 0.581786 | 4.1:-13582387 | MS.gene27814:CDS |
| CCAACAACAGTTGCTTCTAA+CGG | 0.582805 | 4.1:+13582071 | None:intergenic |
| AAGCTAAAACTAATGAATCA+GGG | 0.584737 | 4.1:-13582247 | MS.gene27814:CDS |
| GGTACTTGTGTAATGGATCA+GGG | 0.587895 | 4.1:-13582653 | None:intergenic |
| CGCTCACAGCCATTGCGCTG+AGG | 0.595519 | 4.1:-13581976 | MS.gene27814:CDS |
| GTTAGGGGTCAGAACATTGG+TGG | 0.610248 | 4.1:-13582422 | MS.gene27814:CDS |
| GCCAGCATCCAACCAACCTG+CGG | 0.612641 | 4.1:+13580870 | None:intergenic |
| ATGAACTGTGGCACCTGCGA+AGG | 0.615670 | 4.1:-13582155 | MS.gene27814:CDS |
| ACCATCAAGAAGTTACAGAA+TGG | 0.619620 | 4.1:+13580839 | None:intergenic |
| AATTGCATAGGGTTGATCAA+GGG | 0.626574 | 4.1:-13582376 | MS.gene27814:CDS |
| GATCAGGGAACAAGTAAAGG+TGG | 0.626626 | 4.1:-13582638 | MS.gene27814:CDS |
| AACGATAAAAGCACCAAAAG+GGG | 0.627323 | 4.1:-13582213 | MS.gene27814:CDS |
| ATGATAGTAACTCACCCCGC+AGG | 0.629835 | 4.1:-13580886 | MS.gene27814:CDS |
| GAGAAAGCTTTAGAGGTTAG+GGG | 0.634684 | 4.1:-13582437 | MS.gene27814:CDS |
| CAATGATCTTGTATTGAATG+AGG | 0.642930 | 4.1:-13582468 | MS.gene27814:CDS |
| AAATGCATTACCAGTAACAT+CGG | 0.643727 | 4.1:+13580943 | None:intergenic |
| AGAAGAATCTAGTACAACAC+AGG | 0.650979 | 4.1:+13582316 | None:intergenic |
| TACAGGTTGTGCGAAATATG+TGG | 0.657247 | 4.1:-13580986 | MS.gene27814:intron |
| TGTGCATGTAAAGATGAGCT+AGG | 0.657822 | 4.1:-13582002 | MS.gene27814:CDS |
| TGCTTCTAACGGTTGCCCAG+AGG | 0.661368 | 4.1:+13582082 | None:intergenic |
| TAGTAACTCACCCCGCAGGT+TGG | 0.661970 | 4.1:-13580882 | MS.gene27814:CDS |
| ATCTTCACACGAAAGAACCA+TGG | 0.683588 | 4.1:+13580791 | None:intergenic |
| TGATCTTGTATTGAATGAGG+AGG | 0.684968 | 4.1:-13582465 | MS.gene27814:CDS |
| CAGCATCCAACCAACCTGCG+GGG | 0.693363 | 4.1:+13580872 | None:intergenic |
| TGTGTGATTGATATGAACTG+TGG | 0.752488 | 4.1:-13582167 | MS.gene27814:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTCTGTAATAATACT+TGG | - | chr4.1:13581741-13581760 | MS.gene27814:intron | 15.0% |
| !! | AAAAGATACTAATAGAACTA+AGG | + | chr4.1:13582412-13582431 | None:intergenic | 20.0% |
| !! | AAATATAATGCAATGCTAAT+AGG | + | chr4.1:13581705-13581724 | None:intergenic | 20.0% |
| !! | ATTAAGTAATGAGAACTTAA+AGG | + | chr4.1:13581646-13581665 | None:intergenic | 20.0% |
| !! | ATTCTAATGCTACATTTATA+AGG | + | chr4.1:13581830-13581849 | None:intergenic | 20.0% |
| !!! | AATCACACATGAATTTTTAT+CGG | + | chr4.1:13581247-13581266 | None:intergenic | 20.0% |
| !!! | ATATGCTTATGCTATATTTT+TGG | - | chr4.1:13582368-13582387 | MS.gene27814:CDS | 20.0% |
| !!! | TCATTTTTTTTCTTTCTTTC+TGG | - | chr4.1:13581999-13582018 | MS.gene27814:CDS | 20.0% |
| ! | AAGCTAAAACTAATGAATCA+GGG | - | chr4.1:13581178-13581197 | MS.gene27814:intron | 25.0% |
| ! | ATGACATCTAAATGATGATA+TGG | - | chr4.1:13582229-13582248 | MS.gene27814:CDS | 25.0% |
| ! | CTAGTTATAATTCGCTTAAT+CGG | - | chr4.1:13581073-13581092 | MS.gene27814:intron | 25.0% |
| ! | TAGTTATAATTCGCTTAATC+GGG | - | chr4.1:13581074-13581093 | MS.gene27814:intron | 25.0% |
| ! | TGATGGAGATAATAGAAAAT+TGG | - | chr4.1:13581155-13581174 | MS.gene27814:intron | 25.0% |
| ! | TTGTGAATTCAAAATACACA+AGG | + | chr4.1:13581603-13581622 | None:intergenic | 25.0% |
| ! | TTTGAATTCACAATGCTATA+GGG | - | chr4.1:13581610-13581629 | MS.gene27814:intron | 25.0% |
| !! | AATATTGCTGATAAAAGTAC+AGG | - | chr4.1:13581384-13581403 | MS.gene27814:intron | 25.0% |
| !! | ATCTTTTCTTCTTTGCATAA+TGG | - | chr4.1:13581772-13581791 | MS.gene27814:intron | 25.0% |
| !! | GTACTTTTATCAGCAATATT+TGG | + | chr4.1:13581384-13581403 | None:intergenic | 25.0% |
| !! | TGAATGATGAAATGATTTGT+AGG | - | chr4.1:13581307-13581326 | MS.gene27814:intron | 25.0% |
| !! | TTTTGAATTCACAATGCTAT+AGG | - | chr4.1:13581609-13581628 | MS.gene27814:intron | 25.0% |
| AAAGCAGTTGTATTAGTAGT+TGG | - | chr4.1:13581946-13581965 | MS.gene27814:intron | 30.0% | |
| AAATGCATTACCAGTAACAT+CGG | + | chr4.1:13582485-13582504 | None:intergenic | 30.0% | |
| AATAGATACTCAGAAAGTCA+GGG | + | chr4.1:13582072-13582091 | None:intergenic | 30.0% | |
| AATTTGAGTCATTTGGTTGA+AGG | - | chr4.1:13580850-13580869 | MS.gene27814:CDS | 30.0% | |
| ATAGAAGACTCAAAGAATCA+TGG | + | chr4.1:13582329-13582348 | None:intergenic | 30.0% | |
| CAATGATCTTGTATTGAATG+AGG | - | chr4.1:13580957-13580976 | MS.gene27814:CDS | 30.0% | |
| CATTACTTAATAATCCGACT+AGG | - | chr4.1:13581655-13581674 | MS.gene27814:intron | 30.0% | |
| GAAGCTAAAACTAATGAATC+AGG | - | chr4.1:13581177-13581196 | MS.gene27814:intron | 30.0% | |
| GTAATGCATTTATGGAAGAA+TGG | - | chr4.1:13582494-13582513 | MS.gene27814:CDS | 30.0% | |
| TAGAATGAGAACAAAACAGT+TGG | - | chr4.1:13581844-13581863 | MS.gene27814:intron | 30.0% | |
| TAGTAGTTGGTTAATGTATG+TGG | - | chr4.1:13581959-13581978 | MS.gene27814:CDS | 30.0% | |
| TGATGAGAATTTGAGTCATT+TGG | - | chr4.1:13580843-13580862 | MS.gene27814:CDS | 30.0% | |
| TTCTAGATATCATTCCTAGT+CGG | + | chr4.1:13581672-13581691 | None:intergenic | 30.0% | |
| TTCTGAGTATCTATTGGTAA+TGG | - | chr4.1:13582077-13582096 | MS.gene27814:CDS | 30.0% | |
| ! | AGTATCTTTTCTGATCATAC+AGG | - | chr4.1:13582422-13582441 | MS.gene27814:CDS | 30.0% |
| ! | ATGATATGGATTCTTGTTTG+TGG | - | chr4.1:13582243-13582262 | MS.gene27814:CDS | 30.0% |
| ! | CAATTGAATTCTGTTGTTTG+TGG | - | chr4.1:13582195-13582214 | MS.gene27814:CDS | 30.0% |
| ! | TGTTACTGGTAATGCATTTA+TGG | - | chr4.1:13582486-13582505 | MS.gene27814:CDS | 30.0% |
| !! | TAACGATAAAAGCACCAAAA+GGG | - | chr4.1:13581211-13581230 | MS.gene27814:intron | 30.0% |
| !! | TTAACGATAAAAGCACCAAA+AGG | - | chr4.1:13581210-13581229 | MS.gene27814:intron | 30.0% |
| !!! | AATTCATAGTCGGTTTTTTC+AGG | + | chr4.1:13581033-13581052 | None:intergenic | 30.0% |
| AAACCGACTATGAATTGCAT+AGG | - | chr4.1:13581037-13581056 | MS.gene27814:intron | 35.0% | |
| AACCCTATGCAATTCATAGT+CGG | + | chr4.1:13581043-13581062 | None:intergenic | 35.0% | |
| AACCGACTATGAATTGCATA+GGG | - | chr4.1:13581038-13581057 | MS.gene27814:intron | 35.0% | |
| ACCATCAAGAAGTTACAGAA+TGG | + | chr4.1:13582589-13582608 | None:intergenic | 35.0% | |
| AGAAGAATCTAGTACAACAC+AGG | + | chr4.1:13581112-13581131 | None:intergenic | 35.0% | |
| AGTACAGGTTTGATTATGCT+TGG | - | chr4.1:13581399-13581418 | MS.gene27814:intron | 35.0% | |
| AGTTGTTAGTACATTGTCAG+AGG | + | chr4.1:13581890-13581909 | None:intergenic | 35.0% | |
| ATGCTGGATCAACTTGATAA+AGG | - | chr4.1:13580817-13580836 | MS.gene27814:CDS | 35.0% | |
| CAATAGATACTCAGAAAGTC+AGG | + | chr4.1:13582073-13582092 | None:intergenic | 35.0% | |
| CTGACTTTCTGAGTATCTAT+TGG | - | chr4.1:13582071-13582090 | MS.gene27814:CDS | 35.0% | |
| GCTAAACTGAAGATTTCACA+AGG | + | chr4.1:13581802-13581821 | None:intergenic | 35.0% | |
| GGTTCAAGATTAAAGGAAAC+AGG | - | chr4.1:13581475-13581494 | MS.gene27814:intron | 35.0% | |
| GTTGTTAGTACATTGTCAGA+GGG | + | chr4.1:13581889-13581908 | None:intergenic | 35.0% | |
| TAAGGAACCTCAGGTTTATT+CGG | + | chr4.1:13582394-13582413 | None:intergenic | 35.0% | |
| TAATAGAACTAAGGAACCTC+AGG | + | chr4.1:13582403-13582422 | None:intergenic | 35.0% | |
| TGATCTTGTATTGAATGAGG+AGG | - | chr4.1:13580960-13580979 | MS.gene27814:CDS | 35.0% | |
| TGCTGGATCAACTTGATAAA+GGG | - | chr4.1:13580818-13580837 | MS.gene27814:CDS | 35.0% | |
| TGTATTGAATGAGGAGGTAA+AGG | - | chr4.1:13580966-13580985 | MS.gene27814:CDS | 35.0% | |
| TGTGTGATTGATATGAACTG+TGG | - | chr4.1:13581258-13581277 | MS.gene27814:intron | 35.0% | |
| TTGTTAGTACATTGTCAGAG+GGG | + | chr4.1:13581888-13581907 | None:intergenic | 35.0% | |
| ! | AATTGCATAGGGTTGATCAA+GGG | - | chr4.1:13581049-13581068 | MS.gene27814:intron | 35.0% |
| ! | TAAAGGTGGTAATGAAATGC+TGG | - | chr4.1:13580801-13580820 | MS.gene27814:CDS | 35.0% |
| ! | TAATAGCTTTTGTTCTGCCA+TGG | - | chr4.1:13582617-13582636 | MS.gene27814:CDS | 35.0% |
| !! | AACGATAAAAGCACCAAAAG+GGG | - | chr4.1:13581212-13581231 | MS.gene27814:intron | 35.0% |
| !! | TGGTAATGGACTTCAATGAA+GGG | - | chr4.1:13582091-13582110 | MS.gene27814:CDS | 35.0% |
| !! | TTGGTAATGGACTTCAATGA+AGG | - | chr4.1:13582090-13582109 | MS.gene27814:CDS | 35.0% |
| AAAAACGTGTCCGATGTTAC+TGG | - | chr4.1:13582472-13582491 | MS.gene27814:CDS | 40.0% | |
| ACTTCAATGAAGGGTGAGTT+GGG | - | chr4.1:13582100-13582119 | MS.gene27814:CDS | 40.0% | |
| ATCTTCACACGAAAGAACCA+TGG | + | chr4.1:13582637-13582656 | None:intergenic | 40.0% | |
| ATGGAAGAATGGTGTGAAAG+TGG | - | chr4.1:13582505-13582524 | MS.gene27814:CDS | 40.0% | |
| ATGGATCAGGGAACAAGTAA+AGG | - | chr4.1:13580784-13580803 | MS.gene27814:CDS | 40.0% | |
| CCAAATTCATCCATCTCGTA+AGG | + | chr4.1:13582154-13582173 | None:intergenic | 40.0% | |
| CCAACAACAGTTGCTTCTAA+CGG | + | chr4.1:13581357-13581376 | None:intergenic | 40.0% | |
| CCTTACGAGATGGATGAATT+TGG | - | chr4.1:13582151-13582170 | MS.gene27814:CDS | 40.0% | |
| GAGGCATGGTTCAAGATTAA+AGG | - | chr4.1:13581468-13581487 | MS.gene27814:intron | 40.0% | |
| GATTTGTAGGATTTGCCATC+TGG | - | chr4.1:13581320-13581339 | MS.gene27814:intron | 40.0% | |
| GCCATTCTGTAACTTCTTGA+TGG | - | chr4.1:13582585-13582604 | MS.gene27814:CDS | 40.0% | |
| GCTGGATCAACTTGATAAAG+GGG | - | chr4.1:13580819-13580838 | MS.gene27814:CDS | 40.0% | |
| GTTGAACATGTCACTGTTGA+TGG | - | chr4.1:13581138-13581157 | MS.gene27814:intron | 40.0% | |
| TACAGGTTGTGCGAAATATG+TGG | - | chr4.1:13582439-13582458 | MS.gene27814:CDS | 40.0% | |
| TGTGCATGTAAAGATGAGCT+AGG | - | chr4.1:13581423-13581442 | MS.gene27814:intron | 40.0% | |
| TTAGTGTATCCGGTGAAGAT+TGG | - | chr4.1:13580917-13580936 | MS.gene27814:CDS | 40.0% | |
| ! | AGTAACATCGGACACGTTTT+TGG | + | chr4.1:13582473-13582492 | None:intergenic | 40.0% |
| ! | ATTTTCACCAAAACCTTCGC+AGG | + | chr4.1:13581286-13581305 | None:intergenic | 40.0% |
| ! | GAATTGCATAGGGTTGATCA+AGG | - | chr4.1:13581048-13581067 | MS.gene27814:intron | 40.0% |
| ! | GGTAAAGGAGAAAGCTTTAG+AGG | - | chr4.1:13580981-13581000 | MS.gene27814:CDS | 40.0% |
| ! | TTTTCATGTTGACGTGTTCG+TGG | - | chr4.1:13582277-13582296 | MS.gene27814:CDS | 40.0% |
| !! | AGGAGAAAGCTTTAGAGGTT+AGG | - | chr4.1:13580986-13581005 | MS.gene27814:intron | 40.0% |
| !! | GAGAAAGCTTTAGAGGTTAG+GGG | - | chr4.1:13580988-13581007 | MS.gene27814:intron | 40.0% |
| !! | GGAGAAAGCTTTAGAGGTTA+GGG | - | chr4.1:13580987-13581006 | MS.gene27814:intron | 40.0% |
| !! | TAACTTCTTGATGGTGTGTC+TGG | - | chr4.1:13582594-13582613 | MS.gene27814:CDS | 40.0% |
| !! | TTTTTGGCCGAATAAACCTG+AGG | - | chr4.1:13582384-13582403 | MS.gene27814:CDS | 40.0% |
| AGGGTGCATAGGGATAATAG+TGG | + | chr4.1:13582053-13582072 | None:intergenic | 45.0% | |
| ATCCGGTGAAGATTGGAGTT+CGG | - | chr4.1:13580924-13580943 | MS.gene27814:CDS | 45.0% | |
| ATCTCGTAAGGAACACCAAC+AGG | + | chr4.1:13582142-13582161 | None:intergenic | 45.0% | |
| CCGTTAGAAGCAACTGTTGT+TGG | - | chr4.1:13581354-13581373 | MS.gene27814:intron | 45.0% | |
| GACTTCAATGAAGGGTGAGT+TGG | - | chr4.1:13582099-13582118 | MS.gene27814:CDS | 45.0% | |
| GATCAGGGAACAAGTAAAGG+TGG | - | chr4.1:13580787-13580806 | MS.gene27814:CDS | 45.0% | |
| TAGTACATTGTCAGAGGGGA+GGG | + | chr4.1:13581884-13581903 | None:intergenic | 45.0% | |
| TCAGAAAGTCAGGGTGCATA+GGG | + | chr4.1:13582063-13582082 | None:intergenic | 45.0% | |
| TGGGCATAGTTTGGGTGATA+GGG | - | chr4.1:13580894-13580913 | MS.gene27814:CDS | 45.0% | |
| TTAGTACATTGTCAGAGGGG+AGG | + | chr4.1:13581885-13581904 | None:intergenic | 45.0% | |
| TTCCGAACTCCAATCTTCAC+CGG | + | chr4.1:13580929-13580948 | None:intergenic | 45.0% | |
| TTGCAACTGATGCAGGAACT+GGG | - | chr4.1:13580875-13580894 | MS.gene27814:CDS | 45.0% | |
| ! | AAAGGCATATAGACGCCTGT+TGG | - | chr4.1:13582124-13582143 | MS.gene27814:CDS | 45.0% |
| ! | ATGAAGGGTGAGTTGGGAAA+AGG | - | chr4.1:13582106-13582125 | MS.gene27814:CDS | 45.0% |
| ! | GGTGATAGGGTTAGTGTATC+CGG | - | chr4.1:13580907-13580926 | MS.gene27814:CDS | 45.0% |
| ! | TGTTGGTGTTCCTTACGAGA+TGG | - | chr4.1:13582141-13582160 | MS.gene27814:CDS | 45.0% |
| !!! | AATTACAATTTTTTTTTTAT+AGG | + | chr4.1:13581921-13581940 | None:intergenic | 5.0% |
| AGTACATTGTCAGAGGGGAG+GGG | + | chr4.1:13581883-13581902 | None:intergenic | 50.0% | |
| ATGATAGTAACTCACCCCGC+AGG | - | chr4.1:13582539-13582558 | MS.gene27814:CDS | 50.0% | |
| CTCAGAAAGTCAGGGTGCAT+AGG | + | chr4.1:13582064-13582083 | None:intergenic | 50.0% | |
| CTGGGCATAGTTTGGGTGAT+AGG | - | chr4.1:13580893-13580912 | MS.gene27814:CDS | 50.0% | |
| GAAGGAGTTGCAACTGATGC+AGG | - | chr4.1:13580868-13580887 | MS.gene27814:CDS | 50.0% | |
| GAGGTTAGGGGTCAGAACAT+TGG | - | chr4.1:13581000-13581019 | MS.gene27814:intron | 50.0% | |
| GCAGGAACTGGGCATAGTTT+GGG | - | chr4.1:13580886-13580905 | MS.gene27814:CDS | 50.0% | |
| GTTAGGGGTCAGAACATTGG+TGG | - | chr4.1:13581003-13581022 | MS.gene27814:intron | 50.0% | |
| GTTGCAACTGATGCAGGAAC+TGG | - | chr4.1:13580874-13580893 | MS.gene27814:CDS | 50.0% | |
| TGCAGGAACTGGGCATAGTT+TGG | - | chr4.1:13580885-13580904 | MS.gene27814:CDS | 50.0% | |
| AGGATTTGCCATCTGGCCTC+TGG | - | chr4.1:13581327-13581346 | MS.gene27814:intron | 55.0% | |
| ATGAACTGTGGCACCTGCGA+AGG | - | chr4.1:13581270-13581289 | MS.gene27814:intron | 55.0% | |
| GGATTTGCCATCTGGCCTCT+GGG | - | chr4.1:13581328-13581347 | MS.gene27814:intron | 55.0% | |
| GTACATTGTCAGAGGGGAGG+GGG | + | chr4.1:13581882-13581901 | None:intergenic | 55.0% | |
| TAGTAACTCACCCCGCAGGT+TGG | - | chr4.1:13582543-13582562 | MS.gene27814:CDS | 55.0% | |
| TGAACCATGCCTCAGCGCAA+TGG | + | chr4.1:13581461-13581480 | None:intergenic | 55.0% | |
| TGCTTCTAACGGTTGCCCAG+AGG | + | chr4.1:13581346-13581365 | None:intergenic | 55.0% | |
| ! | TCGGTCTCAGACACCCCTTT+TGG | + | chr4.1:13581228-13581247 | None:intergenic | 55.0% |
| ! | TGTGGCACCTGCGAAGGTTT+TGG | - | chr4.1:13581276-13581295 | MS.gene27814:intron | 55.0% |
| ACAGCCATTGCGCTGAGGCA+TGG | - | chr4.1:13581454-13581473 | MS.gene27814:intron | 60.0% | |
| CAGCATCCAACCAACCTGCG+GGG | + | chr4.1:13582556-13582575 | None:intergenic | 60.0% | |
| CCAGCATCCAACCAACCTGC+GGG | + | chr4.1:13582557-13582576 | None:intergenic | 60.0% | |
| GCCAGCATCCAACCAACCTG+CGG | + | chr4.1:13582558-13582577 | None:intergenic | 60.0% | |
| TGTCAGAGGGGAGGGGGAAA+TGG | + | chr4.1:13581876-13581895 | None:intergenic | 60.0% | |
| ! | AGGTTGGTTGGATGCTGGCG+CGG | - | chr4.1:13582559-13582578 | MS.gene27814:CDS | 60.0% |
| !! | AACTCACCCCGCAGGTTGGT+TGG | - | chr4.1:13582547-13582566 | MS.gene27814:CDS | 60.0% |
| ACGGTTGCCCAGAGGCCAGA+TGG | + | chr4.1:13581338-13581357 | None:intergenic | 65.0% | |
| CGCTCACAGCCATTGCGCTG+AGG | - | chr4.1:13581449-13581468 | MS.gene27814:intron | 65.0% | |
| ! | GGTTGGTTGGATGCTGGCGC+GGG | - | chr4.1:13582560-13582579 | MS.gene27814:CDS | 65.0% |
| !! | CCCGCAGGTTGGTTGGATGC+TGG | - | chr4.1:13582554-13582573 | MS.gene27814:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 13580784 | 13582663 | 13580784 | ID=MS.gene27814 |
| chr4.1 | mRNA | 13580784 | 13582663 | 13580784 | ID=MS.gene27814.t1;Parent=MS.gene27814 |
| chr4.1 | exon | 13581951 | 13582663 | 13581951 | ID=MS.gene27814.t1.exon1;Parent=MS.gene27814.t1 |
| chr4.1 | CDS | 13581951 | 13582663 | 13581951 | ID=cds.MS.gene27814.t1;Parent=MS.gene27814.t1 |
| chr4.1 | exon | 13580784 | 13581003 | 13580784 | ID=MS.gene27814.t1.exon2;Parent=MS.gene27814.t1 |
| chr4.1 | CDS | 13580784 | 13581003 | 13580784 | ID=cds.MS.gene27814.t1;Parent=MS.gene27814.t1 |
| Gene Sequence |
| Protein sequence |
