Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29233.t1 | XP_003589752.1 | 97.2 | 608 | 17 | 0 | 1 | 608 | 1 | 608 | 0.00E+00 | 1091.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29233.t1 | Q9SIS3 | 67.7 | 616 | 181 | 7 | 1 | 607 | 1 | 607 | 1.4e-206 | 720.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29233.t1 | G7IBG9 | 97.2 | 608 | 17 | 0 | 1 | 608 | 1 | 608 | 0.0e+00 | 1091.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene29233 | 0.849379 | 3.36E-60 | -1.69E-46 |
| MS.gene049254 | MS.gene29233 | 0.805421 | 1.35E-49 | -1.69E-46 |
| MS.gene049350 | MS.gene29233 | 0.823522 | 1.32E-53 | -1.69E-46 |
| MS.gene049499 | MS.gene29233 | 0.838644 | 2.54E-57 | -1.69E-46 |
| MS.gene049585 | MS.gene29233 | 0.816012 | 6.89E-52 | -1.69E-46 |
| MS.gene049711 | MS.gene29233 | 0.825058 | 5.77E-54 | -1.69E-46 |
| MS.gene049807 | MS.gene29233 | 0.823526 | 1.32E-53 | -1.69E-46 |
| MS.gene049983 | MS.gene29233 | 0.80103 | 1.09E-48 | -1.69E-46 |
| MS.gene050414 | MS.gene29233 | 0.813469 | 2.52E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene29233 | 0.821085 | 4.87E-53 | -1.69E-46 |
| MS.gene050556 | MS.gene29233 | 0.834677 | 2.61E-56 | -1.69E-46 |
| MS.gene050654 | MS.gene29233 | 0.822152 | 2.76E-53 | -1.69E-46 |
| MS.gene050807 | MS.gene29233 | 0.800073 | 1.71E-48 | -1.69E-46 |
| MS.gene051102 | MS.gene29233 | 0.823284 | 1.50E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene29233 | 0.808481 | 3.03E-50 | -1.69E-46 |
| MS.gene051279 | MS.gene29233 | 0.817807 | 2.72E-52 | -1.69E-46 |
| MS.gene051628 | MS.gene29233 | 0.806058 | 9.89E-50 | -1.69E-46 |
| MS.gene051800 | MS.gene29233 | 0.818531 | 1.87E-52 | -1.69E-46 |
| MS.gene051852 | MS.gene29233 | 0.803862 | 2.85E-49 | -1.69E-46 |
| MS.gene052016 | MS.gene29233 | 0.824681 | 7.07E-54 | -1.69E-46 |
| MS.gene052037 | MS.gene29233 | 0.812336 | 4.46E-51 | -1.69E-46 |
| MS.gene052168 | MS.gene29233 | 0.811506 | 6.77E-51 | -1.69E-46 |
| MS.gene052242 | MS.gene29233 | -0.803608 | 3.21E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene29233 | 0.813599 | 2.36E-51 | -1.69E-46 |
| MS.gene052311 | MS.gene29233 | 0.804824 | 1.79E-49 | -1.69E-46 |
| MS.gene052335 | MS.gene29233 | 0.801209 | 1.00E-48 | -1.69E-46 |
| MS.gene052342 | MS.gene29233 | 0.805175 | 1.52E-49 | -1.69E-46 |
| MS.gene052463 | MS.gene29233 | 0.845281 | 4.48E-59 | -1.69E-46 |
| MS.gene052514 | MS.gene29233 | 0.805979 | 1.03E-49 | -1.69E-46 |
| MS.gene052516 | MS.gene29233 | 0.806609 | 7.57E-50 | -1.69E-46 |
| MS.gene052609 | MS.gene29233 | 0.830515 | 2.81E-55 | -1.69E-46 |
| MS.gene052673 | MS.gene29233 | -0.806128 | 9.56E-50 | -1.69E-46 |
| MS.gene052681 | MS.gene29233 | 0.805036 | 1.62E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene29233 | 0.840171 | 1.02E-57 | -1.69E-46 |
| MS.gene053144 | MS.gene29233 | 0.805996 | 1.02E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene29233 | 0.802487 | 5.48E-49 | -1.69E-46 |
| MS.gene054139 | MS.gene29233 | 0.817976 | 2.49E-52 | -1.69E-46 |
| MS.gene054178 | MS.gene29233 | 0.814736 | 1.32E-51 | -1.69E-46 |
| MS.gene054576 | MS.gene29233 | 0.80823 | 3.43E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene29233 | 0.821157 | 4.69E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene29233 | 0.813387 | 2.63E-51 | -1.69E-46 |
| MS.gene054641 | MS.gene29233 | 0.823833 | 1.12E-53 | -1.69E-46 |
| MS.gene054651 | MS.gene29233 | 0.803143 | 4.01E-49 | -1.69E-46 |
| MS.gene054709 | MS.gene29233 | 0.807229 | 5.60E-50 | -1.69E-46 |
| MS.gene055313 | MS.gene29233 | 0.802004 | 6.89E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene29233 | 0.825496 | 4.54E-54 | -1.69E-46 |
| MS.gene055466 | MS.gene29233 | 0.808959 | 2.40E-50 | -1.69E-46 |
| MS.gene055468 | MS.gene29233 | 0.818561 | 1.84E-52 | -1.69E-46 |
| MS.gene055469 | MS.gene29233 | 0.874608 | 5.91E-68 | -1.69E-46 |
| MS.gene055513 | MS.gene29233 | 0.844177 | 8.88E-59 | -1.69E-46 |
| MS.gene055864 | MS.gene29233 | 0.810398 | 1.18E-50 | -1.69E-46 |
| MS.gene056045 | MS.gene29233 | 0.80228 | 6.05E-49 | -1.69E-46 |
| MS.gene056050 | MS.gene29233 | 0.804173 | 2.45E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene29233 | 0.800894 | 1.16E-48 | -1.69E-46 |
| MS.gene056308 | MS.gene29233 | 0.857996 | 1.12E-62 | -1.69E-46 |
| MS.gene056390 | MS.gene29233 | 0.826689 | 2.36E-54 | -1.69E-46 |
| MS.gene056507 | MS.gene29233 | 0.843035 | 1.79E-58 | -1.69E-46 |
| MS.gene056522 | MS.gene29233 | -0.809798 | 1.58E-50 | -1.69E-46 |
| MS.gene056699 | MS.gene29233 | 0.804816 | 1.80E-49 | -1.69E-46 |
| MS.gene057919 | MS.gene29233 | 0.832903 | 7.25E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene29233 | 0.809701 | 1.66E-50 | -1.69E-46 |
| MS.gene058289 | MS.gene29233 | 0.801434 | 9.02E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene29233 | 0.806187 | 9.29E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene29233 | 0.80372 | 3.05E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene29233 | 0.804668 | 1.93E-49 | -1.69E-46 |
| MS.gene058638 | MS.gene29233 | 0.827492 | 1.52E-54 | -1.69E-46 |
| MS.gene058639 | MS.gene29233 | 0.836705 | 8.00E-57 | -1.69E-46 |
| MS.gene058647 | MS.gene29233 | 0.814195 | 1.74E-51 | -1.69E-46 |
| MS.gene058668 | MS.gene29233 | 0.810245 | 1.27E-50 | -1.69E-46 |
| MS.gene058681 | MS.gene29233 | 0.80615 | 9.46E-50 | -1.69E-46 |
| MS.gene058836 | MS.gene29233 | 0.81039 | 1.18E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene29233 | 0.802328 | 5.91E-49 | -1.69E-46 |
| MS.gene058862 | MS.gene29233 | 0.800617 | 1.33E-48 | -1.69E-46 |
| MS.gene059170 | MS.gene29233 | 0.827334 | 1.66E-54 | -1.69E-46 |
| MS.gene059171 | MS.gene29233 | 0.806201 | 9.23E-50 | -1.69E-46 |
| MS.gene059439 | MS.gene29233 | 0.817932 | 2.55E-52 | -1.69E-46 |
| MS.gene059561 | MS.gene29233 | 0.811841 | 5.72E-51 | -1.69E-46 |
| MS.gene059570 | MS.gene29233 | 0.82035 | 7.19E-53 | -1.69E-46 |
| MS.gene059725 | MS.gene29233 | 0.813036 | 3.14E-51 | -1.69E-46 |
| MS.gene059965 | MS.gene29233 | 0.803302 | 3.72E-49 | -1.69E-46 |
| MS.gene060435 | MS.gene29233 | 0.81023 | 1.28E-50 | -1.69E-46 |
| MS.gene06052 | MS.gene29233 | 0.823666 | 1.23E-53 | -1.69E-46 |
| MS.gene060637 | MS.gene29233 | 0.810759 | 9.82E-51 | -1.69E-46 |
| MS.gene060932 | MS.gene29233 | 0.820827 | 5.58E-53 | -1.69E-46 |
| MS.gene060933 | MS.gene29233 | 0.820075 | 8.31E-53 | -1.69E-46 |
| MS.gene060937 | MS.gene29233 | 0.808896 | 2.47E-50 | -1.69E-46 |
| MS.gene061006 | MS.gene29233 | 0.821954 | 3.07E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene29233 | 0.839211 | 1.81E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene91116 | MS.gene29233 | PPI |
| MS.gene88594 | MS.gene29233 | PPI |
| MS.gene026183 | MS.gene29233 | PPI |
| MS.gene29233 | MS.gene026183 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29233.t1 | MTR_1g038840 | 97.204 | 608 | 17 | 0 | 1 | 608 | 1 | 608 | 0.0 | 1222 |
| MS.gene29233.t1 | MTR_1g038840 | 97.007 | 568 | 17 | 0 | 41 | 608 | 1 | 568 | 0.0 | 1141 |
| MS.gene29233.t1 | MTR_5g093860 | 48.387 | 589 | 276 | 7 | 16 | 602 | 15 | 577 | 0.0 | 527 |
| MS.gene29233.t1 | MTR_6g061690 | 47.895 | 570 | 270 | 9 | 15 | 571 | 15 | 570 | 5.07e-164 | 485 |
| MS.gene29233.t1 | MTR_1g076700 | 46.011 | 539 | 274 | 4 | 15 | 550 | 14 | 538 | 1.18e-150 | 452 |
| MS.gene29233.t1 | MTR_8g041400 | 41.368 | 585 | 307 | 8 | 15 | 595 | 13 | 565 | 4.90e-148 | 439 |
| MS.gene29233.t1 | MTR_3g085440 | 40.827 | 556 | 305 | 9 | 1 | 551 | 1 | 537 | 2.40e-136 | 410 |
| MS.gene29233.t1 | MTR_7g075220 | 42.406 | 507 | 278 | 3 | 12 | 518 | 321 | 813 | 3.68e-118 | 375 |
| MS.gene29233.t1 | MTR_3g085440 | 41.591 | 440 | 246 | 5 | 1 | 437 | 1 | 432 | 2.73e-110 | 338 |
| MS.gene29233.t1 | MTR_8g023220 | 35.606 | 528 | 294 | 9 | 2 | 516 | 1 | 495 | 1.94e-96 | 304 |
| MS.gene29233.t1 | MTR_8g032090 | 36.842 | 95 | 56 | 1 | 254 | 348 | 202 | 292 | 2.05e-12 | 68.6 |
| MS.gene29233.t1 | MTR_4g077600 | 53.846 | 52 | 24 | 0 | 27 | 78 | 187 | 238 | 6.92e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene29233.t1 | AT2G01910 | 67.208 | 616 | 184 | 7 | 1 | 607 | 1 | 607 | 0.0 | 800 |
| MS.gene29233.t1 | AT1G14690 | 65.253 | 613 | 192 | 8 | 1 | 605 | 1 | 600 | 0.0 | 797 |
| MS.gene29233.t1 | AT1G14690 | 65.253 | 613 | 192 | 8 | 1 | 605 | 1 | 600 | 0.0 | 797 |
| MS.gene29233.t1 | AT2G01910 | 68.174 | 575 | 166 | 6 | 41 | 607 | 1 | 566 | 0.0 | 759 |
| MS.gene29233.t1 | AT5G55230 | 46.980 | 596 | 287 | 8 | 16 | 605 | 15 | 587 | 9.71e-175 | 508 |
| MS.gene29233.t1 | AT5G55230 | 46.980 | 596 | 287 | 8 | 16 | 605 | 15 | 587 | 9.71e-175 | 508 |
| MS.gene29233.t1 | AT4G26760 | 46.010 | 589 | 286 | 8 | 16 | 602 | 15 | 573 | 3.18e-172 | 502 |
| MS.gene29233.t1 | AT5G55230 | 44.960 | 625 | 286 | 9 | 16 | 605 | 15 | 616 | 6.40e-169 | 495 |
| MS.gene29233.t1 | AT2G38720 | 42.932 | 573 | 293 | 5 | 20 | 592 | 12 | 550 | 9.86e-142 | 423 |
| MS.gene29233.t1 | AT5G51600 | 45.185 | 540 | 286 | 4 | 11 | 549 | 10 | 540 | 4.87e-138 | 419 |
| MS.gene29233.t1 | AT3G60840 | 41.502 | 506 | 282 | 4 | 13 | 517 | 12 | 504 | 2.41e-129 | 395 |
| MS.gene29233.t1 | AT1G27920 | 38.448 | 554 | 319 | 9 | 1 | 550 | 1 | 536 | 2.39e-127 | 386 |
| MS.gene29233.t1 | AT5G62250 | 40.317 | 568 | 303 | 8 | 12 | 566 | 5 | 549 | 1.18e-111 | 345 |
| MS.gene29233.t1 | AT5G62250 | 40.317 | 568 | 303 | 8 | 12 | 566 | 5 | 549 | 1.18e-111 | 345 |
| MS.gene29233.t1 | AT1G27920 | 38.554 | 415 | 245 | 5 | 1 | 412 | 1 | 408 | 2.87e-94 | 296 |
Find 117 sgRNAs with CRISPR-Local
Find 231 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACAGCAATACCTGGAATTT+TGG | 0.152671 | 1.1:+23269599 | None:intergenic |
| GAGAATGTTTAGATGTTTAT+AGG | 0.158902 | 1.1:-23271456 | MS.gene29233:CDS |
| CATTCTCTCTGTGGTGTTCT+TGG | 0.163659 | 1.1:-23270657 | MS.gene29233:CDS |
| GGTACGTTTGGTTGAATTAT+TGG | 0.226130 | 1.1:-23269339 | MS.gene29233:CDS |
| GTAGATCTTGCATCTTCTTT+TGG | 0.235244 | 1.1:+23268796 | None:intergenic |
| AATCAAAAGGAAGCCATATA+TGG | 0.244001 | 1.1:-23268768 | MS.gene29233:CDS |
| TAAGAAGAGGTCGGAGTTAG+AGG | 0.273452 | 1.1:-23270102 | MS.gene29233:CDS |
| CTCTTCTTCTCTCTGTTGTC+TGG | 0.295010 | 1.1:+23269301 | None:intergenic |
| AAGTGCAAGTAGTGCTTATA+TGG | 0.309402 | 1.1:+23272394 | None:intergenic |
| TCAGGGGCAGTACTTGTATC+AGG | 0.319336 | 1.1:+23270053 | None:intergenic |
| TTGCTTGTGAAGAGGAAAAT+TGG | 0.319572 | 1.1:-23269797 | MS.gene29233:CDS |
| ATTCGAACTTTGGAATTTGA+TGG | 0.329583 | 1.1:-23270376 | MS.gene29233:CDS |
| ACTAGGTTTAGACCCATATA+TGG | 0.358084 | 1.1:+23268755 | None:intergenic |
| CAGCAAATATGGAACGATAT+TGG | 0.368433 | 1.1:-23271523 | MS.gene29233:CDS |
| TCTCTGTGGTGTTCTTGGAT+TGG | 0.377879 | 1.1:-23270652 | MS.gene29233:CDS |
| TCGCTAACCTATTCGAACTT+TGG | 0.382162 | 1.1:-23270386 | MS.gene29233:CDS |
| ATTAATGCACTAGCTTTCTC+AGG | 0.388767 | 1.1:+23270035 | None:intergenic |
| TCAAATTCCAAAGTTCGAAT+AGG | 0.392179 | 1.1:+23270379 | None:intergenic |
| GCTAGTGCATTAATAGATTC+TGG | 0.395752 | 1.1:-23270026 | MS.gene29233:intron |
| TGTTGCAATCTCAGCTTCCT+TGG | 0.397291 | 1.1:+23271378 | None:intergenic |
| ACCTGAGTCCCATGCAAACT+TGG | 0.397911 | 1.1:+23270600 | None:intergenic |
| TGTTGAAAGAGCGCCTCTTT+CGG | 0.406114 | 1.1:+23270281 | None:intergenic |
| TTAAACTTGGGGAGGGGACT+CGG | 0.411081 | 1.1:+23268467 | None:intergenic |
| TACTGCACCTCTCAACTTTG+TGG | 0.419511 | 1.1:-23268535 | MS.gene29233:CDS |
| TTGGGGAGGGGACTCGGGTT+CGG | 0.422995 | 1.1:+23268473 | None:intergenic |
| GGTGTTCTTGGATTGGATTT+CGG | 0.424164 | 1.1:-23270645 | MS.gene29233:CDS |
| CTCAGCTTCCTTGGCTGCAA+GGG | 0.426652 | 1.1:+23271387 | None:intergenic |
| TTCTTCAATTCTTCGACCAA+TGG | 0.430753 | 1.1:+23271038 | None:intergenic |
| TTTAGATGTTTATAGGAGAA+AGG | 0.430994 | 1.1:-23271449 | MS.gene29233:CDS |
| GTAACTATAACCAAAATTCC+AGG | 0.440102 | 1.1:-23269609 | MS.gene29233:intron |
| CACACACCACGCTCCTACTC+TGG | 0.447423 | 1.1:-23268597 | MS.gene29233:CDS |
| TCGTGGTCTTCAAAAGGAAA+AGG | 0.451152 | 1.1:-23270841 | MS.gene29233:intron |
| TAAACTTGGGGAGGGGACTC+GGG | 0.452043 | 1.1:+23268468 | None:intergenic |
| ATGTCATATGTAGGTACGTT+TGG | 0.453660 | 1.1:-23269351 | MS.gene29233:intron |
| GATAACACTCGGTACAGTGC+TGG | 0.455300 | 1.1:-23269675 | MS.gene29233:CDS |
| GAAATTTATATAGATTAAGA+TGG | 0.457640 | 1.1:-23271105 | MS.gene29233:intron |
| CTTATATGGATACTAGTGAT+AGG | 0.457710 | 1.1:+23272408 | None:intergenic |
| GGACAAAGACCGTATGTTGA+TGG | 0.458837 | 1.1:-23271488 | MS.gene29233:CDS |
| GATGTACATCATCTACCGTT+TGG | 0.462046 | 1.1:+23270622 | None:intergenic |
| ATCAAAAGGAAGCCATATAT+GGG | 0.473492 | 1.1:-23268767 | MS.gene29233:CDS |
| GTAGAAGAGAAGTAACAGAT+AGG | 0.475843 | 1.1:-23269836 | MS.gene29233:CDS |
| TACGACATTGTATCTTCCTT+AGG | 0.478785 | 1.1:+23268507 | None:intergenic |
| TTCTTTGCTCAAAGAACTTG+AGG | 0.479736 | 1.1:-23272373 | MS.gene29233:intron |
| AAGATAAGCGGTGAGATTTG+TGG | 0.481668 | 1.1:-23270963 | MS.gene29233:CDS |
| AGATCTACTCCTAAATCAAA+AGG | 0.486123 | 1.1:-23268781 | MS.gene29233:CDS |
| TCATCAATCCCTTGCAGCCA+AGG | 0.486920 | 1.1:-23271395 | MS.gene29233:CDS |
| GAATCAGAAATCACCGAAAG+AGG | 0.488175 | 1.1:-23270294 | MS.gene29233:CDS |
| AGACCGTATGTTGATGGAGC+TGG | 0.494507 | 1.1:-23271482 | MS.gene29233:CDS |
| TCCAAGTTTGCATGGGACTC+AGG | 0.500735 | 1.1:-23270601 | MS.gene29233:CDS |
| GCATCTTCGTGGTCTTCAAA+AGG | 0.503443 | 1.1:-23270847 | MS.gene29233:CDS |
| CAACTTTGTGGCTATACCTA+AGG | 0.504876 | 1.1:-23268523 | MS.gene29233:CDS |
| ACAAACGGTTATCGTGCAAA+TGG | 0.505640 | 1.1:-23268705 | MS.gene29233:CDS |
| GAATATCAAACGCATCTTCG+TGG | 0.509015 | 1.1:-23270858 | MS.gene29233:CDS |
| CGTGCAAATGGCGACAGTGT+CGG | 0.519746 | 1.1:-23268693 | MS.gene29233:CDS |
| CTGTGAATAATGTTGGCCAT+TGG | 0.523179 | 1.1:-23272435 | None:intergenic |
| TTTGCAGGCTTCGGCAGAAG+TGG | 0.524852 | 1.1:-23270171 | MS.gene29233:intron |
| TCTCAGCTTCCTTGGCTGCA+AGG | 0.526154 | 1.1:+23271386 | None:intergenic |
| GTCGGCTATGGCAATGGCAA+TGG | 0.527924 | 1.1:-23268675 | MS.gene29233:CDS |
| TTCAACAGAGATAATAGAGA+AGG | 0.529481 | 1.1:-23270265 | MS.gene29233:intron |
| GACAGTGTCGGCTATGGCAA+TGG | 0.531201 | 1.1:-23268681 | MS.gene29233:CDS |
| AAGGAAATCTAGAGTACAGA+AGG | 0.531486 | 1.1:-23270505 | MS.gene29233:intron |
| GATGTACATCCAAGTTTGCA+TGG | 0.533457 | 1.1:-23270609 | MS.gene29233:CDS |
| ATTGAGTTCCGTCGAGGTGT+AGG | 0.535124 | 1.1:+23268642 | None:intergenic |
| TATAAGCAAAACACTGGCAT+GGG | 0.537140 | 1.1:-23269495 | MS.gene29233:CDS |
| AAGAAGAGAAGAGACGACAG+AGG | 0.537947 | 1.1:-23269286 | MS.gene29233:CDS |
| AACAGCTTTAGAAAGACAAA+CGG | 0.538225 | 1.1:-23268720 | MS.gene29233:CDS |
| ACACTCACATCATCATTGAC+AGG | 0.541461 | 1.1:+23270933 | None:intergenic |
| GCTTGCATCTGTCACACCAT+TGG | 0.541601 | 1.1:-23271054 | MS.gene29233:CDS |
| GATGTGAGTGTCAGCAGCAC+AGG | 0.543972 | 1.1:-23270921 | MS.gene29233:CDS |
| CATTGAAGCACAAATAGTAA+AGG | 0.552349 | 1.1:-23269877 | MS.gene29233:CDS |
| TTATAAGCAAAACACTGGCA+TGG | 0.556441 | 1.1:-23269496 | MS.gene29233:CDS |
| TGGATTGGATTTCGGCCAAA+CGG | 0.556812 | 1.1:-23270637 | MS.gene29233:CDS |
| AATGGCGACAGTGTCGGCTA+TGG | 0.558612 | 1.1:-23268687 | MS.gene29233:CDS |
| CAACACTAATAGCTGCACTC+GGG | 0.560451 | 1.1:-23271360 | MS.gene29233:CDS |
| AAAGAGATCTGCATCGCTGA+AGG | 0.560647 | 1.1:-23271081 | MS.gene29233:CDS |
| AAGAACTCGTATTTAAGAAG+AGG | 0.561215 | 1.1:-23270115 | MS.gene29233:CDS |
| ATAACACTCGGTACAGTGCT+GGG | 0.566360 | 1.1:-23269674 | MS.gene29233:CDS |
| TCCTACTCTGGTCGTCGTAA+CGG | 0.567678 | 1.1:-23268585 | MS.gene29233:CDS |
| TTAATGCACTAGCTTTCTCA+GGG | 0.568025 | 1.1:+23270036 | None:intergenic |
| AGAAGAAAGGCTGAAACAGT+TGG | 0.570250 | 1.1:-23271009 | MS.gene29233:CDS |
| TTCTCAAGTTAAAAGCAGAA+AGG | 0.571810 | 1.1:-23270524 | MS.gene29233:CDS |
| TTTGAACTTAAACTTGGGGA+GGG | 0.579865 | 1.1:+23268460 | None:intergenic |
| GGAACATGATATGAGCTCTC+CGG | 0.585065 | 1.1:-23271338 | MS.gene29233:intron |
| GAGTTCCGTCGAGGTGTAGG+AGG | 0.590544 | 1.1:+23268645 | None:intergenic |
| TCACATCATCATTGACAGGA+TGG | 0.591634 | 1.1:+23270937 | None:intergenic |
| GCAACACTAATAGCTGCACT+CGG | 0.600020 | 1.1:-23271361 | MS.gene29233:CDS |
| ATGAAAGCGTGCTTTGATGT+TGG | 0.600513 | 1.1:+23271414 | None:intergenic |
| TCTCCAGCTCCATCAACATA+CGG | 0.601579 | 1.1:+23271479 | None:intergenic |
| ATTAGCAATAGCACATTGGA+AGG | 0.604701 | 1.1:-23270561 | MS.gene29233:CDS |
| ATTGCAAGACTTTCTGAAGT+CGG | 0.605869 | 1.1:+23270694 | None:intergenic |
| AATGAGGTGCATTCTCTCTG+TGG | 0.607233 | 1.1:-23270666 | MS.gene29233:CDS |
| TTGAACTTAAACTTGGGGAG+GGG | 0.607474 | 1.1:+23268461 | None:intergenic |
| ACTCGGTACAGTGCTGGGCG+AGG | 0.608408 | 1.1:-23269669 | MS.gene29233:CDS |
| CAATCTTATAAGCAAAACAC+TGG | 0.611464 | 1.1:-23269501 | MS.gene29233:CDS |
| TAACAGATAGGATTGATAAG+TGG | 0.615452 | 1.1:-23269824 | MS.gene29233:CDS |
| ATGTACATCCAAGTTTGCAT+GGG | 0.615491 | 1.1:-23270608 | MS.gene29233:CDS |
| ATGTTAGCTAATAGTTCACA+AGG | 0.618604 | 1.1:+23269897 | None:intergenic |
| CGATATTGGAGAGAGCGAGA+AGG | 0.619852 | 1.1:-23271509 | MS.gene29233:CDS |
| GTGAGTGTCAGCAGCACAGG+TGG | 0.627088 | 1.1:-23270918 | MS.gene29233:CDS |
| ACTCGTATTTAAGAAGAGGT+CGG | 0.627648 | 1.1:-23270111 | MS.gene29233:CDS |
| TAATATTAGCAATAGCACAT+TGG | 0.628365 | 1.1:-23270565 | MS.gene29233:CDS |
| CTATGCCTCCTACACCTCGA+CGG | 0.629673 | 1.1:-23268650 | MS.gene29233:CDS |
| AGAAGAGAAGAGACGACAGA+GGG | 0.631005 | 1.1:-23269285 | MS.gene29233:intron |
| TCCGTTACGACGACCAGAGT+AGG | 0.637628 | 1.1:+23268584 | None:intergenic |
| AGTCTTGCAATGTGTGAATG+AGG | 0.639710 | 1.1:-23270682 | MS.gene29233:CDS |
| AACACTAATAGCTGCACTCG+GGG | 0.641813 | 1.1:-23271359 | MS.gene29233:CDS |
| AAGTTTGCATGGGACTCAGG+TGG | 0.643834 | 1.1:-23270598 | MS.gene29233:CDS |
| GTGGCTGTTTGCTTGTGAAG+AGG | 0.648627 | 1.1:-23269805 | MS.gene29233:CDS |
| TTATAGGAGAAAGGTTGATG+AGG | 0.650244 | 1.1:-23271440 | MS.gene29233:CDS |
| ACTCAAATAGAAAAGATAAG+CGG | 0.652373 | 1.1:-23270975 | MS.gene29233:CDS |
| ACTAGTGATAGGACTTCCAA+TGG | 0.653569 | 1.1:+23272419 | None:intergenic |
| GGTATAGCCACAAAGTTGAG+AGG | 0.671097 | 1.1:+23268528 | None:intergenic |
| GGGAATTTCAGGATAACACT+CGG | 0.675882 | 1.1:-23269686 | MS.gene29233:intron |
| CCACTCATTGAGTTCCGTCG+AGG | 0.679509 | 1.1:+23268636 | None:intergenic |
| CCTCGACGGAACTCAATGAG+TGG | 0.689832 | 1.1:-23268636 | MS.gene29233:CDS |
| CGACGACCAGAGTAGGAGCG+TGG | 0.716930 | 1.1:+23268591 | None:intergenic |
| TAATGCACTAGCTTTCTCAG+GGG | 0.766836 | 1.1:+23270037 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAGCAAATCAATAATA+TGG | + | chr1.1:23269236-23269255 | None:intergenic | 15.0% |
| !! | AATTGAAAATTTCACTATAT+TGG | - | chr1.1:23269011-23269030 | MS.gene29233:intron | 15.0% |
| !! | GAAATTTATATAGATTAAGA+TGG | - | chr1.1:23269788-23269807 | MS.gene29233:CDS | 15.0% |
| !! | TAAAATTAATTACTTAACCT+TGG | - | chr1.1:23271971-23271990 | MS.gene29233:intron | 15.0% |
| !!! | TTTAAAAAGTACAATTAAGA+GGG | + | chr1.1:23270467-23270486 | None:intergenic | 15.0% |
| !!! | TTTTAAAAAGTACAATTAAG+AGG | + | chr1.1:23270468-23270487 | None:intergenic | 15.0% |
| !!! | TTTTATTGTAAATTTTCATG+TGG | - | chr1.1:23268960-23268979 | MS.gene29233:intron | 15.0% |
| !! | AAACATGGAAAATATATGAT+AGG | + | chr1.1:23270689-23270708 | None:intergenic | 20.0% |
| !! | AAATAACAAAGATCAATTTG+AGG | + | chr1.1:23271682-23271701 | None:intergenic | 20.0% |
| !! | AAATGCTTATAGGAAAATAT+GGG | + | chr1.1:23271650-23271669 | None:intergenic | 20.0% |
| !! | AATAATAAGACTAGAACTTA+AGG | + | chr1.1:23270431-23270450 | None:intergenic | 20.0% |
| !! | ATAATAAGACTAGAACTTAA+GGG | + | chr1.1:23270430-23270449 | None:intergenic | 20.0% |
| !! | GTAATAAAATATACATAAGC+AGG | + | chr1.1:23271743-23271762 | None:intergenic | 20.0% |
| !! | TTACACAGGTAATAAATTAA+GGG | + | chr1.1:23271865-23271884 | None:intergenic | 20.0% |
| !! | TTGATGTATTAATATACTTG+AGG | - | chr1.1:23269744-23269763 | MS.gene29233:intron | 20.0% |
| !!! | CTTCAATTTTTTTTTACCTA+TGG | - | chr1.1:23269325-23269344 | MS.gene29233:CDS | 20.0% |
| !!! | TAAAAGATCAATTTTATGCA+TGG | - | chr1.1:23269611-23269630 | MS.gene29233:CDS | 20.0% |
| !!! | TAATAAATTAAGGGTACAAA+AGG | + | chr1.1:23271856-23271875 | None:intergenic | 20.0% |
| !!! | TGTAGGTTATTTTATTGTAA+GGG | - | chr1.1:23268843-23268862 | MS.gene29233:intron | 20.0% |
| !!! | TTAAAAAGTACAATTAAGAG+GGG | + | chr1.1:23270466-23270485 | None:intergenic | 20.0% |
| !!! | TTCTTTTTTTCAAAATGATG+AGG | - | chr1.1:23268593-23268612 | MS.gene29233:CDS | 20.0% |
| !!! | TTGGTTTTGTTAACAAATTT+TGG | - | chr1.1:23269030-23269049 | MS.gene29233:intron | 20.0% |
| !!! | TTTTCTGTTTATAATCTCAT+AGG | - | chr1.1:23272073-23272092 | MS.gene29233:intron | 20.0% |
| ! | AAATCCCATATTAACTGAAT+TGG | + | chr1.1:23269062-23269081 | None:intergenic | 25.0% |
| ! | AAATTCATGTTAATGCAACA+GGG | + | chr1.1:23270899-23270918 | None:intergenic | 25.0% |
| ! | AATACATCAAAAAGCTTTCA+TGG | + | chr1.1:23269734-23269753 | None:intergenic | 25.0% |
| ! | ACTCAAATAGAAAAGATAAG+CGG | - | chr1.1:23269918-23269937 | MS.gene29233:intron | 25.0% |
| ! | AGTTACCAATTCAGTTAATA+TGG | - | chr1.1:23269054-23269073 | MS.gene29233:intron | 25.0% |
| ! | ATGATAGGAAAAAATGATGA+TGG | + | chr1.1:23270674-23270693 | None:intergenic | 25.0% |
| ! | ATGGTAAAGAACTTTAACAA+TGG | + | chr1.1:23269217-23269236 | None:intergenic | 25.0% |
| ! | CAAAATGAGCAAAATTATAG+AGG | + | chr1.1:23269657-23269676 | None:intergenic | 25.0% |
| ! | CAAATGCTTATAGGAAAATA+TGG | + | chr1.1:23271651-23271670 | None:intergenic | 25.0% |
| ! | CAAGTCATTTATGTATTTAC+CGG | + | chr1.1:23269577-23269596 | None:intergenic | 25.0% |
| ! | CTTACACAGGTAATAAATTA+AGG | + | chr1.1:23271866-23271885 | None:intergenic | 25.0% |
| ! | GAAAATTCATGATAAAGTGA+TGG | - | chr1.1:23269273-23269292 | MS.gene29233:intron | 25.0% |
| ! | GAGAATGTTTAGATGTTTAT+AGG | - | chr1.1:23269437-23269456 | MS.gene29233:intron | 25.0% |
| ! | GTGTAAAACATTTAATGTGA+TGG | - | chr1.1:23271889-23271908 | MS.gene29233:intron | 25.0% |
| ! | GTTACCAATTCAGTTAATAT+GGG | - | chr1.1:23269055-23269074 | MS.gene29233:intron | 25.0% |
| ! | TAATATTAGCAATAGCACAT+TGG | - | chr1.1:23270328-23270347 | MS.gene29233:CDS | 25.0% |
| ! | TGAAGAAGAAAAAAGAAGAA+AGG | - | chr1.1:23269871-23269890 | MS.gene29233:CDS | 25.0% |
| ! | TGTTATAAACTACACTTACT+AGG | + | chr1.1:23271715-23271734 | None:intergenic | 25.0% |
| ! | TTTAGATGTTTATAGGAGAA+AGG | - | chr1.1:23269444-23269463 | MS.gene29233:intron | 25.0% |
| !! | ATTTTATTGTAAGGGAGAAA+GGG | - | chr1.1:23268851-23268870 | MS.gene29233:intron | 25.0% |
| !! | TATTTTATTGTAAGGGAGAA+AGG | - | chr1.1:23268850-23268869 | MS.gene29233:intron | 25.0% |
| !! | TTTATCTTCTCTTTTTACCA+AGG | + | chr1.1:23271991-23272010 | None:intergenic | 25.0% |
| !! | TTTTCAAAATGATGAGGTTT+TGG | - | chr1.1:23268599-23268618 | MS.gene29233:CDS | 25.0% |
| !!! | AAAAATGACTTTTTCAACTC+AGG | + | chr1.1:23268905-23268924 | None:intergenic | 25.0% |
| !!! | AAGACTTGTTTTCTATATGA+TGG | - | chr1.1:23271432-23271451 | MS.gene29233:CDS | 25.0% |
| !!! | AGACTTGTTTTCTATATGAT+GGG | - | chr1.1:23271433-23271452 | MS.gene29233:CDS | 25.0% |
| !!! | CTAAAGCTGTTAGTTTTTTT+TGG | + | chr1.1:23272164-23272183 | None:intergenic | 25.0% |
| !!! | CTGTAGGTTATTTTATTGTA+AGG | - | chr1.1:23268842-23268861 | MS.gene29233:intron | 25.0% |
| !!! | CTTTTTAAAAATGCAGTTGA+AGG | - | chr1.1:23270478-23270497 | MS.gene29233:intron | 25.0% |
| !!! | TTTAAAAGAGAAAGCACTTA+TGG | - | chr1.1:23268808-23268827 | MS.gene29233:intron | 25.0% |
| AAATAGGATTTGTCAACCAT+AGG | + | chr1.1:23269344-23269363 | None:intergenic | 30.0% | |
| AAGAACTCGTATTTAAGAAG+AGG | - | chr1.1:23270778-23270797 | MS.gene29233:intron | 30.0% | |
| AATAAATGAAAGCTCTTCGA+TGG | - | chr1.1:23270092-23270111 | MS.gene29233:CDS | 30.0% | |
| AATCAAAAGGAAGCCATATA+TGG | - | chr1.1:23272125-23272144 | MS.gene29233:intron | 30.0% | |
| ACAAGAGAGAATTACAAACT+TGG | + | chr1.1:23271136-23271155 | None:intergenic | 30.0% | |
| AGATCTACTCCTAAATCAAA+AGG | - | chr1.1:23272112-23272131 | MS.gene29233:intron | 30.0% | |
| ATAAACAGAAAACCAGAAGT+GGG | + | chr1.1:23272065-23272084 | None:intergenic | 30.0% | |
| ATCAAAAGGAAGCCATATAT+GGG | - | chr1.1:23272126-23272145 | MS.gene29233:intron | 30.0% | |
| ATGTTAGCTAATAGTTCACA+AGG | + | chr1.1:23270999-23271018 | None:intergenic | 30.0% | |
| CAAATTCATGTTAATGCAAC+AGG | + | chr1.1:23270900-23270919 | None:intergenic | 30.0% | |
| CAATCTTATAAGCAAAACAC+TGG | - | chr1.1:23271392-23271411 | MS.gene29233:CDS | 30.0% | |
| CATTGAAGCACAAATAGTAA+AGG | - | chr1.1:23271016-23271035 | MS.gene29233:CDS | 30.0% | |
| CTGGAAGAAAAAAAAAAGCA+CGG | + | chr1.1:23270174-23270193 | None:intergenic | 30.0% | |
| CTTATATGGATACTAGTGAT+AGG | + | chr1.1:23268488-23268507 | None:intergenic | 30.0% | |
| GACAAACAACAAATGCTTAT+AGG | + | chr1.1:23271660-23271679 | None:intergenic | 30.0% | |
| GAGAAGAAACAAAACATCAT+TGG | + | chr1.1:23268762-23268781 | None:intergenic | 30.0% | |
| GTAACTATAACCAAAATTCC+AGG | - | chr1.1:23271284-23271303 | MS.gene29233:intron | 30.0% | |
| GTGAAAACCAGAAATAACTA+TGG | + | chr1.1:23271476-23271495 | None:intergenic | 30.0% | |
| TAACAGATAGGATTGATAAG+TGG | - | chr1.1:23271069-23271088 | MS.gene29233:CDS | 30.0% | |
| TAATGTAAATAACCCACTTC+TGG | - | chr1.1:23272050-23272069 | MS.gene29233:intron | 30.0% | |
| TATAAACAGAAAACCAGAAG+TGG | + | chr1.1:23272066-23272085 | None:intergenic | 30.0% | |
| TATAGAATGAGTCTCTTGAT+TGG | - | chr1.1:23269173-23269192 | MS.gene29233:intron | 30.0% | |
| TCAAATTCCAAAGTTCGAAT+AGG | + | chr1.1:23270517-23270536 | None:intergenic | 30.0% | |
| TCCTATTTGGCAAAAACAAT+AGG | + | chr1.1:23269142-23269161 | None:intergenic | 30.0% | |
| TGATTGTCAATGTCATATGT+AGG | - | chr1.1:23271533-23271552 | MS.gene29233:intron | 30.0% | |
| TGGAACTTTCAACAACAAAT+AGG | + | chr1.1:23271327-23271346 | None:intergenic | 30.0% | |
| TTCAACAGAGATAATAGAGA+AGG | - | chr1.1:23270628-23270647 | MS.gene29233:CDS | 30.0% | |
| TTCTCAAGTTAAAAGCAGAA+AGG | - | chr1.1:23270369-23270388 | MS.gene29233:CDS | 30.0% | |
| ! | AAGATCAATTTTATGCATGG+TGG | - | chr1.1:23269614-23269633 | MS.gene29233:CDS | 30.0% |
| ! | AAGTAGTCCATAGTTATTTC+TGG | - | chr1.1:23271466-23271485 | MS.gene29233:CDS | 30.0% |
| ! | ATATTTGCTGCACACAAAAT+AGG | + | chr1.1:23269360-23269379 | None:intergenic | 30.0% |
| ! | ATATTTTATTACTCCCCCTT+TGG | - | chr1.1:23271751-23271770 | MS.gene29233:intron | 30.0% |
| ! | TATTTTGTGTGCAGCAAATA+TGG | - | chr1.1:23269359-23269378 | MS.gene29233:intron | 30.0% |
| ! | TTTTATTGTAAGGGAGAAAG+GGG | - | chr1.1:23268852-23268871 | MS.gene29233:intron | 30.0% |
| !! | AACAGCTTTAGAAAGACAAA+CGG | - | chr1.1:23272173-23272192 | MS.gene29233:intron | 30.0% |
| !! | AGAAAGCACTTATGGTTATA+GGG | - | chr1.1:23268816-23268835 | MS.gene29233:intron | 30.0% |
| !! | ATTCGAACTTTGGAATTTGA+TGG | - | chr1.1:23270517-23270536 | MS.gene29233:CDS | 30.0% |
| !! | GACTTGTTTTCTATATGATG+GGG | - | chr1.1:23271434-23271453 | MS.gene29233:CDS | 30.0% |
| !! | TATGGGATTTTAGTATGACT+TGG | - | chr1.1:23269072-23269091 | MS.gene29233:intron | 30.0% |
| !! | TGTGACTTTTTCTTACAAAC+AGG | + | chr1.1:23271799-23271818 | None:intergenic | 30.0% |
| !!! | ATATGGCTTCCTTTTGATTT+AGG | + | chr1.1:23272124-23272143 | None:intergenic | 30.0% |
| !!! | ATGATGTTTTGTTTCTTCTC+AGG | - | chr1.1:23268762-23268781 | MS.gene29233:CDS | 30.0% |
| !!! | CTGTTAGTTTTTTTTGGACT+AGG | + | chr1.1:23272158-23272177 | None:intergenic | 30.0% |
| !!! | TCCTATTGTTTTTGCCAAAT+AGG | - | chr1.1:23269138-23269157 | MS.gene29233:intron | 30.0% |
| !!! | TTCTGCTTTTAACTTGAGAA+TGG | + | chr1.1:23270369-23270388 | None:intergenic | 30.0% |
| AAAGCACATTTCAGCAAACA+TGG | + | chr1.1:23270704-23270723 | None:intergenic | 35.0% | |
| AAGTGCAAGTAGTGCTTATA+TGG | + | chr1.1:23268502-23268521 | None:intergenic | 35.0% | |
| AATTTCTTCTGTCAGACCAA+AGG | + | chr1.1:23271770-23271789 | None:intergenic | 35.0% | |
| ACTAGGTTTAGACCCATATA+TGG | + | chr1.1:23272141-23272160 | None:intergenic | 35.0% | |
| ACTCGTATTTAAGAAGAGGT+CGG | - | chr1.1:23270782-23270801 | MS.gene29233:intron | 35.0% | |
| AGAGAACACACTGTCATTAT+AGG | + | chr1.1:23271356-23271375 | None:intergenic | 35.0% | |
| ATAAGATTGTCAACCATTGC+TGG | + | chr1.1:23271381-23271400 | None:intergenic | 35.0% | |
| ATAGGAAAATATGGGCAAAG+AGG | + | chr1.1:23271642-23271661 | None:intergenic | 35.0% | |
| ATGTACATCCAAGTTTGCAT+GGG | - | chr1.1:23270285-23270304 | MS.gene29233:CDS | 35.0% | |
| ATGTCATATGTAGGTACGTT+TGG | - | chr1.1:23271542-23271561 | MS.gene29233:intron | 35.0% | |
| ATTAGCAATAGCACATTGGA+AGG | - | chr1.1:23270332-23270351 | MS.gene29233:CDS | 35.0% | |
| ATTTCTTCTGTCAGACCAAA+GGG | + | chr1.1:23271769-23271788 | None:intergenic | 35.0% | |
| CAGCAAATATGGAACGATAT+TGG | - | chr1.1:23269370-23269389 | MS.gene29233:intron | 35.0% | |
| GCTAGTGCATTAATAGATTC+TGG | - | chr1.1:23270867-23270886 | MS.gene29233:CDS | 35.0% | |
| GGTACGTTTGGTTGAATTAT+TGG | - | chr1.1:23271554-23271573 | MS.gene29233:intron | 35.0% | |
| GTAGAAGAGAAGTAACAGAT+AGG | - | chr1.1:23271057-23271076 | MS.gene29233:CDS | 35.0% | |
| TAAAAATAACTCTGCGAAGG+CGG | + | chr1.1:23271498-23271517 | None:intergenic | 35.0% | |
| TACGACATTGTATCTTCCTT+AGG | + | chr1.1:23272389-23272408 | None:intergenic | 35.0% | |
| TATAAGCAAAACACTGGCAT+GGG | - | chr1.1:23271398-23271417 | MS.gene29233:CDS | 35.0% | |
| TATGCAGAGTCAATCCTATT+TGG | + | chr1.1:23269155-23269174 | None:intergenic | 35.0% | |
| TTATAAGCAAAACACTGGCA+TGG | - | chr1.1:23271397-23271416 | MS.gene29233:CDS | 35.0% | |
| TTCTTCAATTCTTCGACCAA+TGG | + | chr1.1:23269858-23269877 | None:intergenic | 35.0% | |
| TTCTTTGCTCAAAGAACTTG+AGG | - | chr1.1:23268520-23268539 | MS.gene29233:CDS | 35.0% | |
| TTGCTTGTGAAGAGGAAAAT+TGG | - | chr1.1:23271096-23271115 | MS.gene29233:intron | 35.0% | |
| ! | AAGAGAGAAACTCTTTTCTG+AGG | - | chr1.1:23270552-23270571 | MS.gene29233:CDS | 35.0% |
| ! | AAGGAAATCTAGAGTACAGA+AGG | - | chr1.1:23270388-23270407 | MS.gene29233:CDS | 35.0% |
| ! | GGTCTGACAGAAGAAATTTT+TGG | - | chr1.1:23271772-23271791 | MS.gene29233:intron | 35.0% |
| ! | GTAGATCTTGCATCTTCTTT+TGG | + | chr1.1:23272100-23272119 | None:intergenic | 35.0% |
| ! | TGTTTTACACAAGCTTACAC+AGG | + | chr1.1:23271879-23271898 | None:intergenic | 35.0% |
| !! | ATTAATGCACTAGCTTTCTC+AGG | + | chr1.1:23270861-23270880 | None:intergenic | 35.0% |
| !! | ATTGCAAGACTTTCTGAAGT+CGG | + | chr1.1:23270202-23270221 | None:intergenic | 35.0% |
| !! | CAATCGACCTATTTTGAGAA+GGG | - | chr1.1:23269704-23269723 | MS.gene29233:intron | 35.0% |
| !! | GAGAAAGCACTTATGGTTAT+AGG | - | chr1.1:23268815-23268834 | MS.gene29233:intron | 35.0% |
| !! | GTTGATGATGATGAATAGTG+TGG | - | chr1.1:23268672-23268691 | MS.gene29233:CDS | 35.0% |
| !! | TCAATCGACCTATTTTGAGA+AGG | - | chr1.1:23269703-23269722 | MS.gene29233:intron | 35.0% |
| !! | TTAATGCACTAGCTTTCTCA+GGG | + | chr1.1:23270860-23270879 | None:intergenic | 35.0% |
| !! | TTATAGGAGAAAGGTTGATG+AGG | - | chr1.1:23269453-23269472 | MS.gene29233:intron | 35.0% |
| !!! | CTTCGCAGAGTTATTTTTAG+CGG | - | chr1.1:23271499-23271518 | MS.gene29233:CDS | 35.0% |
| !!! | GAATCCTCTGTTTTTGATAC+AGG | - | chr1.1:23270963-23270982 | MS.gene29233:CDS | 35.0% |
| AAGATAAGCGGTGAGATTTG+TGG | - | chr1.1:23269930-23269949 | MS.gene29233:intron | 40.0% | |
| ACAAACGGTTATCGTGCAAA+TGG | - | chr1.1:23272188-23272207 | MS.gene29233:intron | 40.0% | |
| ACACTCACATCATCATTGAC+AGG | + | chr1.1:23269963-23269982 | None:intergenic | 40.0% | |
| ACAGAGGATTCGATAGTATC+AGG | + | chr1.1:23270954-23270973 | None:intergenic | 40.0% | |
| ACTAGTGATAGGACTTCCAA+TGG | + | chr1.1:23268477-23268496 | None:intergenic | 40.0% | |
| AGAAGAAAGGCTGAAACAGT+TGG | - | chr1.1:23269884-23269903 | MS.gene29233:CDS | 40.0% | |
| AGTCTTGCAATGTGTGAATG+AGG | - | chr1.1:23270211-23270230 | MS.gene29233:intron | 40.0% | |
| CAACTTTGTGGCTATACCTA+AGG | - | chr1.1:23272370-23272389 | MS.gene29233:intron | 40.0% | |
| CAAGCCTGTATCAAAAACAG+AGG | + | chr1.1:23270970-23270989 | None:intergenic | 40.0% | |
| CGCTAAAAATAACTCTGCGA+AGG | + | chr1.1:23271501-23271520 | None:intergenic | 40.0% | |
| GAATATCAAACGCATCTTCG+TGG | - | chr1.1:23270035-23270054 | MS.gene29233:CDS | 40.0% | |
| GAATCAGAAATCACCGAAAG+AGG | - | chr1.1:23270599-23270618 | MS.gene29233:CDS | 40.0% | |
| GATGTACATCATCTACCGTT+TGG | + | chr1.1:23270274-23270293 | None:intergenic | 40.0% | |
| GATGTACATCCAAGTTTGCA+TGG | - | chr1.1:23270284-23270303 | MS.gene29233:CDS | 40.0% | |
| GCATTTATGACAGCAATACC+TGG | + | chr1.1:23271305-23271324 | None:intergenic | 40.0% | |
| GGGAATTTCAGGATAACACT+CGG | - | chr1.1:23271207-23271226 | MS.gene29233:intron | 40.0% | |
| TATGGTTATAGGGTCTCTGT+AGG | - | chr1.1:23268826-23268845 | MS.gene29233:intron | 40.0% | |
| TCACATCATCATTGACAGGA+TGG | + | chr1.1:23269959-23269978 | None:intergenic | 40.0% | |
| TCGCTAACCTATTCGAACTT+TGG | - | chr1.1:23270507-23270526 | MS.gene29233:CDS | 40.0% | |
| TCGTGGTCTTCAAAAGGAAA+AGG | - | chr1.1:23270052-23270071 | MS.gene29233:CDS | 40.0% | |
| TGGTGTTCCCTTCTCAAAAT+AGG | + | chr1.1:23269714-23269733 | None:intergenic | 40.0% | |
| TTTCTTCTGTCAGACCAAAG+GGG | + | chr1.1:23271768-23271787 | None:intergenic | 40.0% | |
| ! | AAATGTGCTTTTGCAGGCTT+CGG | - | chr1.1:23270713-23270732 | MS.gene29233:intron | 40.0% |
| ! | ATGAAAGCGTGCTTTGATGT+TGG | + | chr1.1:23269482-23269501 | None:intergenic | 40.0% |
| ! | CATAGTGCACGTCGATTATT+TGG | - | chr1.1:23271163-23271182 | MS.gene29233:intron | 40.0% |
| ! | GACAGCAATACCTGGAATTT+TGG | + | chr1.1:23271297-23271316 | None:intergenic | 40.0% |
| ! | GGTGTTCTTGGATTGGATTT+CGG | - | chr1.1:23270248-23270267 | MS.gene29233:intron | 40.0% |
| ! | TTGCTGAAATGTGCTTTTGC+AGG | - | chr1.1:23270707-23270726 | MS.gene29233:intron | 40.0% |
| ! | TTGTTGTTGAAAGTTCCACG+CGG | - | chr1.1:23271329-23271348 | MS.gene29233:intron | 40.0% |
| !! | TAATGCACTAGCTTTCTCAG+GGG | + | chr1.1:23270859-23270878 | None:intergenic | 40.0% |
| !!! | CTCTGTTTTTGATACAGGCT+TGG | - | chr1.1:23270968-23270987 | MS.gene29233:CDS | 40.0% |
| AAAGAGATCTGCATCGCTGA+AGG | - | chr1.1:23269812-23269831 | MS.gene29233:CDS | 45.0% | |
| AACACTAATAGCTGCACTCG+GGG | - | chr1.1:23269534-23269553 | MS.gene29233:intron | 45.0% | |
| AAGAAGAGAAGAGACGACAG+AGG | - | chr1.1:23271607-23271626 | MS.gene29233:intron | 45.0% | |
| AATGAGGTGCATTCTCTCTG+TGG | - | chr1.1:23270227-23270246 | MS.gene29233:intron | 45.0% | |
| AGAAGAGAAGAGACGACAGA+GGG | - | chr1.1:23271608-23271627 | MS.gene29233:intron | 45.0% | |
| ATAACACTCGGTACAGTGCT+GGG | - | chr1.1:23271219-23271238 | MS.gene29233:intron | 45.0% | |
| ATCCTGAAATTCCCCGTATC+AGG | + | chr1.1:23271201-23271220 | None:intergenic | 45.0% | |
| CAACACTAATAGCTGCACTC+GGG | - | chr1.1:23269533-23269552 | MS.gene29233:intron | 45.0% | |
| CATTCTCTCTGTGGTGTTCT+TGG | - | chr1.1:23270236-23270255 | MS.gene29233:intron | 45.0% | |
| CTCTTCTTCTCTCTGTTGTC+TGG | + | chr1.1:23271595-23271614 | None:intergenic | 45.0% | |
| CTTGTTCACTGACCTGATAC+GGG | - | chr1.1:23271186-23271205 | MS.gene29233:intron | 45.0% | |
| GCAACACTAATAGCTGCACT+CGG | - | chr1.1:23269532-23269551 | MS.gene29233:intron | 45.0% | |
| GCATCTTCGTGGTCTTCAAA+AGG | - | chr1.1:23270046-23270065 | MS.gene29233:CDS | 45.0% | |
| GCTTGTTCACTGACCTGATA+CGG | - | chr1.1:23271185-23271204 | MS.gene29233:intron | 45.0% | |
| GGAACATGATATGAGCTCTC+CGG | - | chr1.1:23269555-23269574 | MS.gene29233:intron | 45.0% | |
| GGACAAAGACCGTATGTTGA+TGG | - | chr1.1:23269405-23269424 | MS.gene29233:intron | 45.0% | |
| GGTATAGCCACAAAGTTGAG+AGG | + | chr1.1:23272368-23272387 | None:intergenic | 45.0% | |
| GTGTGTTCTCTTTCCAGCAA+TGG | - | chr1.1:23271365-23271384 | MS.gene29233:CDS | 45.0% | |
| TAAGAAGAGGTCGGAGTTAG+AGG | - | chr1.1:23270791-23270810 | MS.gene29233:intron | 45.0% | |
| TACTGCACCTCTCAACTTTG+TGG | - | chr1.1:23272358-23272377 | MS.gene29233:intron | 45.0% | |
| TCTCCAGCTCCATCAACATA+CGG | + | chr1.1:23269417-23269436 | None:intergenic | 45.0% | |
| TCTCTGTGGTGTTCTTGGAT+TGG | - | chr1.1:23270241-23270260 | MS.gene29233:intron | 45.0% | |
| TGTTGCAATCTCAGCTTCCT+TGG | + | chr1.1:23269518-23269537 | None:intergenic | 45.0% | |
| TTCTTCTGTCAGACCAAAGG+GGG | + | chr1.1:23271767-23271786 | None:intergenic | 45.0% | |
| TTGTTCACTGACCTGATACG+GGG | - | chr1.1:23271187-23271206 | MS.gene29233:intron | 45.0% | |
| ! | TGGATTGGATTTCGGCCAAA+CGG | - | chr1.1:23270256-23270275 | MS.gene29233:intron | 45.0% |
| !! | TGTTGAAAGAGCGCCTCTTT+CGG | + | chr1.1:23270615-23270634 | None:intergenic | 45.0% |
| !!! | TAATTAATTACTTTTTTTTA+AGG | - | chr1.1:23271946-23271965 | MS.gene29233:intron | 5.0% |
| AAGTTTGCATGGGACTCAGG+TGG | - | chr1.1:23270295-23270314 | MS.gene29233:CDS | 50.0% | |
| ACCTGAGTCCCATGCAAACT+TGG | + | chr1.1:23270296-23270315 | None:intergenic | 50.0% | |
| ACTGTCATTATAGGTCCGCG+TGG | + | chr1.1:23271347-23271366 | None:intergenic | 50.0% | |
| ATTGAGTTCCGTCGAGGTGT+AGG | + | chr1.1:23272254-23272273 | None:intergenic | 50.0% | |
| CGATATTGGAGAGAGCGAGA+AGG | - | chr1.1:23269384-23269403 | MS.gene29233:intron | 50.0% | |
| GACCTGATACGGGGAATTTC+AGG | - | chr1.1:23271196-23271215 | MS.gene29233:intron | 50.0% | |
| GATAACACTCGGTACAGTGC+TGG | - | chr1.1:23271218-23271237 | MS.gene29233:intron | 50.0% | |
| GCTTGCATCTGTCACACCAT+TGG | - | chr1.1:23269839-23269858 | MS.gene29233:CDS | 50.0% | |
| GTGGCTGTTTGCTTGTGAAG+AGG | - | chr1.1:23271088-23271107 | MS.gene29233:CDS | 50.0% | |
| TCAGGGGCAGTACTTGTATC+AGG | + | chr1.1:23270843-23270862 | None:intergenic | 50.0% | |
| TCATCAATCCCTTGCAGCCA+AGG | - | chr1.1:23269498-23269517 | MS.gene29233:CDS | 50.0% | |
| TCCAAGTTTGCATGGGACTC+AGG | - | chr1.1:23270292-23270311 | MS.gene29233:CDS | 50.0% | |
| TCCTACTCTGGTCGTCGTAA+CGG | - | chr1.1:23272308-23272327 | MS.gene29233:intron | 50.0% | |
| TTAAACTTGGGGAGGGGACT+CGG | + | chr1.1:23272429-23272448 | None:intergenic | 50.0% | |
| ! | AGACCGTATGTTGATGGAGC+TGG | - | chr1.1:23269411-23269430 | MS.gene29233:intron | 50.0% |
| !! | CTTTCTGAAGTCGGTCAGAC+TGG | + | chr1.1:23270193-23270212 | None:intergenic | 50.0% |
| CCACTCATTGAGTTCCGTCG+AGG | + | chr1.1:23272260-23272279 | None:intergenic | 55.0% | |
| CCTCGACGGAACTCAATGAG+TGG | - | chr1.1:23272257-23272276 | MS.gene29233:intron | 55.0% | |
| CGTGCAAATGGCGACAGTGT+CGG | - | chr1.1:23272200-23272219 | MS.gene29233:intron | 55.0% | |
| CTATGCCTCCTACACCTCGA+CGG | - | chr1.1:23272243-23272262 | MS.gene29233:intron | 55.0% | |
| CTCAGCTTCCTTGGCTGCAA+GGG | + | chr1.1:23269509-23269528 | None:intergenic | 55.0% | |
| GATGTGAGTGTCAGCAGCAC+AGG | - | chr1.1:23269972-23269991 | MS.gene29233:intron | 55.0% | |
| GTCGGCTATGGCAATGGCAA+TGG | - | chr1.1:23272218-23272237 | MS.gene29233:intron | 55.0% | |
| TAAACTTGGGGAGGGGACTC+GGG | + | chr1.1:23272428-23272447 | None:intergenic | 55.0% | |
| TCCGTTACGACGACCAGAGT+AGG | + | chr1.1:23272312-23272331 | None:intergenic | 55.0% | |
| TCTCAGCTTCCTTGGCTGCA+AGG | + | chr1.1:23269510-23269529 | None:intergenic | 55.0% | |
| TTTGCAGGCTTCGGCAGAAG+TGG | - | chr1.1:23270722-23270741 | MS.gene29233:intron | 55.0% | |
| !! | AATGGCGACAGTGTCGGCTA+TGG | - | chr1.1:23272206-23272225 | MS.gene29233:intron | 55.0% |
| !! | GACAGTGTCGGCTATGGCAA+TGG | - | chr1.1:23272212-23272231 | MS.gene29233:intron | 55.0% |
| CACACACCACGCTCCTACTC+TGG | - | chr1.1:23272296-23272315 | MS.gene29233:intron | 60.0% | |
| GAGTTCCGTCGAGGTGTAGG+AGG | + | chr1.1:23272251-23272270 | None:intergenic | 60.0% | |
| GTGAGTGTCAGCAGCACAGG+TGG | - | chr1.1:23269975-23269994 | MS.gene29233:intron | 60.0% | |
| CGACGACCAGAGTAGGAGCG+TGG | + | chr1.1:23272305-23272324 | None:intergenic | 65.0% | |
| TTGGGGAGGGGACTCGGGTT+CGG | + | chr1.1:23272423-23272442 | None:intergenic | 65.0% | |
| ! | ACTCGGTACAGTGCTGGGCG+AGG | - | chr1.1:23271224-23271243 | MS.gene29233:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 23268467 | 23272448 | 23268467 | ID=MS.gene29233 |
| chr1.1 | mRNA | 23268467 | 23272448 | 23268467 | ID=MS.gene29233.t1;Parent=MS.gene29233 |
| chr1.1 | exon | 23272374 | 23272448 | 23272374 | ID=MS.gene29233.t1.exon1;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23272374 | 23272448 | 23272374 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| chr1.1 | exon | 23271339 | 23271542 | 23271339 | ID=MS.gene29233.t1.exon2;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23271339 | 23271542 | 23271339 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| chr1.1 | exon | 23270842 | 23271114 | 23270842 | ID=MS.gene29233.t1.exon3;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23270842 | 23271114 | 23270842 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| chr1.1 | exon | 23270506 | 23270721 | 23270506 | ID=MS.gene29233.t1.exon4;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23270506 | 23270721 | 23270506 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| chr1.1 | exon | 23270266 | 23270421 | 23270266 | ID=MS.gene29233.t1.exon5;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23270266 | 23270421 | 23270266 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| chr1.1 | exon | 23270027 | 23270186 | 23270027 | ID=MS.gene29233.t1.exon6;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23270027 | 23270186 | 23270027 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| chr1.1 | exon | 23269779 | 23269930 | 23269779 | ID=MS.gene29233.t1.exon7;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23269779 | 23269930 | 23269779 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| chr1.1 | exon | 23269610 | 23269697 | 23269610 | ID=MS.gene29233.t1.exon8;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23269610 | 23269697 | 23269610 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| chr1.1 | exon | 23269460 | 23269533 | 23269460 | ID=MS.gene29233.t1.exon9;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23269460 | 23269533 | 23269460 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| chr1.1 | exon | 23269286 | 23269360 | 23269286 | ID=MS.gene29233.t1.exon10;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23269286 | 23269360 | 23269286 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| chr1.1 | exon | 23268467 | 23268820 | 23268467 | ID=MS.gene29233.t1.exon11;Parent=MS.gene29233.t1 |
| chr1.1 | CDS | 23268467 | 23268820 | 23268467 | ID=cds.MS.gene29233.t1;Parent=MS.gene29233.t1 |
| Gene Sequence |
| Protein sequence |
