AlfalfaGEDB | MS.gene45193

M. sativa cultivar XinJiangDaYe / MS.gene45193

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45193.t1	XP_003613479.1	62.7	67	24	1	1	66	45	111	5.50E-12	79.7

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45193.t1	G7K705	62.7	67	24	1	1	66	45	111	4.0e-12	79.7

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene45193	0.803898	2.80E-49	-1.69E-46
MS.gene049159	MS.gene45193	0.827344	1.65E-54	-1.69E-46
MS.gene049272	MS.gene45193	0.811657	6.27E-51	-1.69E-46
MS.gene049435	MS.gene45193	0.833918	4.05E-56	-1.69E-46
MS.gene049501	MS.gene45193	0.823471	1.36E-53	-1.69E-46
MS.gene049647	MS.gene45193	0.806843	6.76E-50	-1.69E-46
MS.gene049850	MS.gene45193	0.81848	1.92E-52	-1.69E-46
MS.gene049919	MS.gene45193	0.804159	2.47E-49	-1.69E-46
MS.gene050020	MS.gene45193	0.826696	2.35E-54	-1.69E-46
MS.gene050156	MS.gene45193	0.81433	1.63E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene45193.t1	MTR_5g037140	98.507	67	0	1	1	66	45	111	3.31e-43	135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 16 sgRNAs with CRISPR-Local

Find 14 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCTGTTGTGAATAGGATC+TGG	0.513984	5.1:-27654255	None:intergenic
AACTACAAGACATTGGTCAG+AGG	0.649811	5.1:+27654119	MS.gene45193:CDS
AGTAAAAGAAGAGTTCCCAA+TGG	0.653384	5.1:+27654231	MS.gene45193:CDS
AGTAGCTTAGTTAGTGGTGG+AGG	0.503163	5.1:+27654084	MS.gene45193:CDS
AGTTGTTGTTGGTAAAGACA+AGG	0.593670	5.1:+27654164	MS.gene45193:CDS
CATGATGAACAAGTTGTTGT+TGG	0.456308	5.1:+27654153	MS.gene45193:CDS
GACAAACAACTACAAGACAT+TGG	0.623172	5.1:+27654112	MS.gene45193:CDS
GACCAGATCCTATTCACAAC+AGG	0.455835	5.1:+27654253	MS.gene45193:CDS
GTGAATAGGATCTGGTCCAT+TGG	0.561168	5.1:-27654247	None:intergenic
GTTGTTGTTGGTAAAGACAA+GGG	0.652393	5.1:+27654165	MS.gene45193:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTAAAAGAAGAGTTCCCAA+TGG	+	chr5.1:27654231-27654250	MS.gene45193:CDS	35.0%
CATGATGAACAAGTTGTTGT+TGG	+	chr5.1:27654153-27654172	MS.gene45193:CDS	35.0%
GACAAACAACTACAAGACAT+TGG	+	chr5.1:27654112-27654131	MS.gene45193:CDS	35.0%
TTTAGTAGCTTAGTTAGTGG+TGG	+	chr5.1:27654081-27654100	MS.gene45193:CDS	35.0%
AACTACAAGACATTGGTCAG+AGG	+	chr5.1:27654119-27654138	MS.gene45193:CDS	40.0%
TGAAGTCCAATTGTGCATCA+TGG	-	chr5.1:27654203-27654222	None:intergenic	40.0%
TGAATAGGATCTGGTCCATT+GGG	-	chr5.1:27654249-27654268	None:intergenic	40.0%
TGTCAACCATGATGCACAAT+TGG	+	chr5.1:27654194-27654213	MS.gene45193:CDS	40.0%
AGTAGCTTAGTTAGTGGTGG+AGG	+	chr5.1:27654084-27654103	MS.gene45193:CDS	45.0%
GTGAATAGGATCTGGTCCAT+TGG	-	chr5.1:27654250-27654269	None:intergenic	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5.1	gene	27654075	27654274	27654075	ID=MS.gene45193
chr5.1	mRNA	27654075	27654274	27654075	ID=MS.gene45193.t1;Parent=MS.gene45193
chr5.1	exon	27654075	27654274	27654075	ID=MS.gene45193.t1.exon1;Parent=MS.gene45193.t1
chr5.1	CDS	27654075	27654274	27654075	ID=cds.MS.gene45193.t1;Parent=MS.gene45193.t1

Gene Sequence	>MS.gene45193 ATGGTTTTTAGTAGCTTAGTTAGTGGTGGAGGAACAGGACAAACAACTACAAGACATTGGTCAGAGGAAACACTCAAACATGATGAACAAGTTGTTGTTGGTAAAGACAAGGGTGTTGTTGTCAACCATGATGCACAATTGGACTTCAACTATATGAGTAAAAGAAGAGTTCCCAATGGACCAGATCCTATTCACAACAG
Protein sequence	>MS.gene45193.t1 MVFSSLVSGGGTGQTTTRHWSEETLKHDEQVVVGKDKGVVVNHDAQLDFNYMSKRRVPNGPDPIHN