Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63530.t1 | XP_003598275.1 | 85 | 575 | 61 | 1 | 1 | 550 | 1 | 575 | 2.80E-226 | 794.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63530.t1 | Q9FH18 | 31.3 | 511 | 292 | 18 | 40 | 539 | 15 | 477 | 4.5e-23 | 110.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63530.t1 | G7J0C1 | 85.0 | 575 | 61 | 1 | 1 | 550 | 1 | 575 | 2.0e-226 | 794.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene63530 | 0.813046 | 3.12E-51 | -1.69E-46 |
| MS.gene049283 | MS.gene63530 | 0.809216 | 2.11E-50 | -1.69E-46 |
| MS.gene049499 | MS.gene63530 | 0.816122 | 6.51E-52 | -1.69E-46 |
| MS.gene049801 | MS.gene63530 | 0.805316 | 1.42E-49 | -1.69E-46 |
| MS.gene049983 | MS.gene63530 | 0.833161 | 6.25E-56 | -1.69E-46 |
| MS.gene050361 | MS.gene63530 | 0.80115 | 1.03E-48 | -1.69E-46 |
| MS.gene050414 | MS.gene63530 | 0.819496 | 1.13E-52 | -1.69E-46 |
| MS.gene050556 | MS.gene63530 | 0.809362 | 1.96E-50 | -1.69E-46 |
| MS.gene050654 | MS.gene63530 | 0.85716 | 1.97E-62 | -1.69E-46 |
| MS.gene050941 | MS.gene63530 | 0.813503 | 2.48E-51 | -1.69E-46 |
| MS.gene051066 | MS.gene63530 | 0.823079 | 1.68E-53 | -1.69E-46 |
| MS.gene051198 | MS.gene63530 | 0.802505 | 5.43E-49 | -1.69E-46 |
| MS.gene051800 | MS.gene63530 | 0.810285 | 1.24E-50 | -1.69E-46 |
| MS.gene052118 | MS.gene63530 | 0.804392 | 2.21E-49 | -1.69E-46 |
| MS.gene052307 | MS.gene63530 | 0.808042 | 3.76E-50 | -1.69E-46 |
| MS.gene052342 | MS.gene63530 | 0.806 | 1.02E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene63530 | 0.803019 | 4.26E-49 | -1.69E-46 |
| MS.gene052855 | MS.gene63530 | 0.800558 | 1.36E-48 | -1.69E-46 |
| MS.gene05350 | MS.gene63530 | 0.809239 | 2.09E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene63530 | 0.832137 | 1.12E-55 | -1.69E-46 |
| MS.gene054641 | MS.gene63530 | 0.826922 | 2.08E-54 | -1.69E-46 |
| MS.gene055513 | MS.gene63530 | 0.803714 | 3.06E-49 | -1.69E-46 |
| MS.gene055926 | MS.gene63530 | 0.800642 | 1.31E-48 | -1.69E-46 |
| MS.gene056045 | MS.gene63530 | 0.830145 | 3.46E-55 | -1.69E-46 |
| MS.gene056181 | MS.gene63530 | 0.802186 | 6.32E-49 | -1.69E-46 |
| MS.gene056308 | MS.gene63530 | 0.821223 | 4.53E-53 | -1.69E-46 |
| MS.gene056480 | MS.gene63530 | 0.823031 | 1.72E-53 | -1.69E-46 |
| MS.gene056776 | MS.gene63530 | 0.810463 | 1.14E-50 | -1.69E-46 |
| MS.gene056831 | MS.gene63530 | 0.806099 | 9.69E-50 | -1.69E-46 |
| MS.gene056973 | MS.gene63530 | 0.81879 | 1.63E-52 | -1.69E-46 |
| MS.gene057598 | MS.gene63530 | 0.813261 | 2.80E-51 | -1.69E-46 |
| MS.gene057600 | MS.gene63530 | 0.816121 | 6.51E-52 | -1.69E-46 |
| MS.gene057919 | MS.gene63530 | 0.809311 | 2.01E-50 | -1.69E-46 |
| MS.gene058081 | MS.gene63530 | 0.800465 | 1.42E-48 | -1.69E-46 |
| MS.gene058223 | MS.gene63530 | -0.802737 | 4.87E-49 | -1.69E-46 |
| MS.gene058330 | MS.gene63530 | 0.809427 | 1.90E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene63530 | 0.815684 | 8.15E-52 | -1.69E-46 |
| MS.gene058836 | MS.gene63530 | 0.802392 | 5.73E-49 | -1.69E-46 |
| MS.gene059439 | MS.gene63530 | 0.815867 | 7.42E-52 | -1.69E-46 |
| MS.gene059561 | MS.gene63530 | 0.80894 | 2.42E-50 | -1.69E-46 |
| MS.gene060296 | MS.gene63530 | 0.812849 | 3.45E-51 | -1.69E-46 |
| MS.gene060527 | MS.gene63530 | 0.824428 | 8.11E-54 | -1.69E-46 |
| MS.gene06052 | MS.gene63530 | 0.812124 | 4.97E-51 | -1.69E-46 |
| MS.gene060777 | MS.gene63530 | 0.835957 | 1.24E-56 | -1.69E-46 |
| MS.gene060932 | MS.gene63530 | 0.859409 | 4.22E-63 | -1.69E-46 |
| MS.gene060933 | MS.gene63530 | 0.815858 | 7.45E-52 | -1.69E-46 |
| MS.gene060935 | MS.gene63530 | 0.806747 | 7.08E-50 | -1.69E-46 |
| MS.gene060937 | MS.gene63530 | 0.828271 | 9.86E-55 | -1.69E-46 |
| MS.gene061100 | MS.gene63530 | 0.840947 | 6.40E-58 | -1.69E-46 |
| MS.gene06121 | MS.gene63530 | 0.837421 | 5.25E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63530.t1 | MTR_3g009740 | 92.870 | 575 | 16 | 1 | 1 | 550 | 1 | 575 | 0.0 | 1052 |
| MS.gene63530.t1 | MTR_8g070940 | 44.398 | 241 | 119 | 6 | 311 | 548 | 94 | 322 | 2.53e-46 | 166 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene63530.t1 | AT4G26455 | 32.882 | 517 | 227 | 19 | 46 | 548 | 52 | 462 | 5.48e-47 | 171 |
| MS.gene63530.t1 | AT5G56210 | 33.684 | 475 | 255 | 19 | 75 | 539 | 53 | 477 | 3.43e-39 | 150 |
| MS.gene63530.t1 | AT3G13360 | 29.222 | 527 | 270 | 19 | 37 | 550 | 82 | 518 | 1.69e-24 | 107 |
| MS.gene63530.t1 | AT3G13360 | 29.222 | 527 | 270 | 19 | 37 | 550 | 23 | 459 | 2.74e-24 | 106 |
Find 138 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCACAACAACCCCAGAATTT+TGG | 0.146319 | 3.3:-4994622 | None:intergenic |
| TTTCAATTTGATGGCAATTT+TGG | 0.164092 | 3.3:+4991087 | MS.gene63530:CDS |
| TATCAATCTCCCTGAATTTC+TGG | 0.176921 | 3.3:-4993923 | None:intergenic |
| AAGGGTTGTGATGAGAAATT+AGG | 0.205381 | 3.3:+4991063 | MS.gene63530:CDS |
| TTGAAATTGGAATATGGATT+TGG | 0.223501 | 3.3:+4990990 | None:intergenic |
| TTCAATCCAACACCCTTTCT+TGG | 0.239534 | 3.3:-4991180 | None:intergenic |
| TCACAGTTATCCCAAAATTC+TGG | 0.258625 | 3.3:+4994611 | MS.gene63530:intron |
| GAAACAACATGTAAACCTTT+TGG | 0.279724 | 3.3:+4994112 | MS.gene63530:CDS |
| ACCCTTTCTTGGTGCCCCTT+TGG | 0.281354 | 3.3:-4991169 | None:intergenic |
| TTGCAGAAGTCCAGAAATTC+AGG | 0.282661 | 3.3:+4993913 | MS.gene63530:intron |
| GGAAAATTCTATTTCCAGTT+TGG | 0.284686 | 3.3:+4991656 | MS.gene63530:CDS |
| AGAAGGAATTGTTGCTGAAT+TGG | 0.284953 | 3.3:+4991125 | MS.gene63530:CDS |
| AGATTTACAATTTACATTAT+TGG | 0.289460 | 3.3:+4994361 | MS.gene63530:CDS |
| TGAAGAAATGGAAGAGAATT+AGG | 0.289879 | 3.3:+4991199 | MS.gene63530:CDS |
| GGTGTTGGCAGATTCTTCTT+TGG | 0.291671 | 3.3:-4994225 | None:intergenic |
| GACGGGTCTTCGAGCGCGTT+TGG | 0.293758 | 3.3:+4991345 | MS.gene63530:CDS |
| TTCTGATGGGCATGCGATCC+GGG | 0.314140 | 3.3:+4991380 | MS.gene63530:CDS |
| GAATTAGGAGGAATGTTGTT+AGG | 0.319758 | 3.3:+4991214 | MS.gene63530:CDS |
| TGCTTGCTTCGAAGGATTCT+AGG | 0.328205 | 3.3:+4994162 | MS.gene63530:CDS |
| CACTTAGCTGAGTCGTCTTC+TGG | 0.338254 | 3.3:-4993960 | None:intergenic |
| GCTGGTTATGGCAACGAAAA+TGG | 0.341150 | 3.3:+4991822 | MS.gene63530:CDS |
| ACCCCTCTTCAAAACCTTAC+CGG | 0.347847 | 3.3:-4991262 | None:intergenic |
| TGAAATTGGAATATGGATTT+GGG | 0.352165 | 3.3:+4990991 | None:intergenic |
| GGTATCACTGCTGTTGATCT+TGG | 0.353511 | 3.3:+4993999 | MS.gene63530:CDS |
| ATCCTTTGATCGAGTCTATC+AGG | 0.353744 | 3.3:+4991940 | MS.gene63530:CDS |
| TTTCTGATGGGCATGCGATC+CGG | 0.358556 | 3.3:+4991379 | MS.gene63530:CDS |
| GAAGTGAATCACGATGAAAA+TGG | 0.359157 | 3.3:+4991036 | MS.gene63530:CDS |
| GTGTTGGCAGATTCTTCTTT+GGG | 0.363361 | 3.3:-4994224 | None:intergenic |
| GGAACTTGAAGCAGCTTGAT+TGG | 0.364131 | 3.3:-4994066 | None:intergenic |
| CGAGTCTATCAGGAGCCTTC+AGG | 0.370738 | 3.3:+4991950 | MS.gene63530:CDS |
| GCAACAATTCCTTCTTGATC+TGG | 0.373469 | 3.3:-4991117 | None:intergenic |
| TCTTCCACCGCCTCCAGGTT+TGG | 0.373554 | 3.3:-4991619 | None:intergenic |
| TGAAAATCTGCGCGGTGTTA+AGG | 0.374121 | 3.3:+4991314 | MS.gene63530:CDS |
| GAAGGAATTGTTGCTGAATT+GGG | 0.375674 | 3.3:+4991126 | MS.gene63530:CDS |
| AAATTAGGGTTTCAATTTGA+TGG | 0.382765 | 3.3:+4991078 | MS.gene63530:CDS |
| TGATGCAGAACTTGAAGGTT+GGG | 0.388770 | 3.3:+4994336 | MS.gene63530:CDS |
| ACGGGTCTTCGAGCGCGTTT+GGG | 0.392314 | 3.3:+4991346 | MS.gene63530:CDS |
| TTCCAAAGGGGCACCAAGAA+AGG | 0.398469 | 3.3:+4991167 | MS.gene63530:CDS |
| TCTCGAATCTGAATCCAAAC+TGG | 0.402149 | 3.3:-4991670 | None:intergenic |
| AATTCGAGTGCCGTTGAATC+CGG | 0.403009 | 3.3:+4991243 | MS.gene63530:CDS |
| TCTAGATATGCAGTTGGATC+TGG | 0.407629 | 3.3:+4991417 | MS.gene63530:CDS |
| TTTAGTACGGTTACTAGTAA+TGG | 0.411085 | 3.3:+4991714 | MS.gene63530:CDS |
| CACAGTTATCCCAAAATTCT+GGG | 0.411552 | 3.3:+4994612 | MS.gene63530:intron |
| AGGGTTGTGATGAGAAATTA+GGG | 0.415507 | 3.3:+4991064 | MS.gene63530:CDS |
| AACCTTCTTCGAGTGCCTCC+TGG | 0.415661 | 3.3:-4991977 | None:intergenic |
| AAGAGGGGTTTATCTGGGTC+TGG | 0.417783 | 3.3:+4991276 | MS.gene63530:CDS |
| TCAAGCTGCTTCAAGTTCCT+TGG | 0.417796 | 3.3:+4994070 | MS.gene63530:CDS |
| GATCTTCAGCACTTGTAGAT+TGG | 0.421590 | 3.3:-4991920 | None:intergenic |
| AAGGAAGATGAAGCTGGTTA+TGG | 0.424672 | 3.3:+4991810 | MS.gene63530:CDS |
| AGGGTGTTGGATTGAAGAAA+TGG | 0.426291 | 3.3:+4991187 | MS.gene63530:CDS |
| GATCATAGATGCAGAGAGTA+AGG | 0.429913 | 3.3:+4994430 | MS.gene63530:CDS |
| TTTAGCGAACTCGGCTCAAA+AGG | 0.431022 | 3.3:+4991563 | MS.gene63530:CDS |
| ACTCTACTTCTTTATACCCT+AGG | 0.432369 | 3.3:-4994247 | None:intergenic |
| CAGGAGCCTTCAGGCTGTCC+AGG | 0.435477 | 3.3:+4991959 | MS.gene63530:CDS |
| CAGATTCGAGATCCAACTAT+AGG | 0.441179 | 3.3:+4991682 | MS.gene63530:CDS |
| AATTAGGAGGAATGTTGTTA+GGG | 0.443869 | 3.3:+4991215 | MS.gene63530:CDS |
| CCTTTCTCATGCCTCACCTT+CGG | 0.447954 | 3.3:-4991510 | None:intergenic |
| CCTCCAGCTTGCTTTCCAAA+AGG | 0.451050 | 3.3:-4994127 | None:intergenic |
| ATAACCAGCTTCATCTTCCT+TGG | 0.452817 | 3.3:-4991808 | None:intergenic |
| GCAAGGCGTGCTTGCTTCGA+AGG | 0.456931 | 3.3:+4994154 | MS.gene63530:CDS |
| TGGTGAAGATGAAGATCTAC+AGG | 0.463551 | 3.3:+4991842 | MS.gene63530:CDS |
| TGATGATAGTTTAGTAATTG+AGG | 0.464590 | 3.3:+4994496 | MS.gene63530:CDS |
| TCACGATGAAAATGGAATCA+AGG | 0.466507 | 3.3:+4991044 | MS.gene63530:CDS |
| AAAGACACCTTGCCTATAGT+TGG | 0.470804 | 3.3:-4991694 | None:intergenic |
| ATGAGAAAGGCCGTGGTAGT+AGG | 0.471311 | 3.3:+4991523 | MS.gene63530:CDS |
| TTCTGCAGCAAATCAGTCTT+GGG | 0.471529 | 3.3:+4991869 | MS.gene63530:CDS |
| TTGACTCTTCCACCGCCTCC+AGG | 0.477112 | 3.3:-4991624 | None:intergenic |
| ATTGAGAGCTCTGCCAAACC+TGG | 0.478850 | 3.3:+4991606 | MS.gene63530:CDS |
| TAAGGTGATGCAGAACTTGA+AGG | 0.479356 | 3.3:+4994331 | MS.gene63530:CDS |
| TTCTTTATACCCTAGGGTGT+TGG | 0.480811 | 3.3:-4994240 | None:intergenic |
| TCTGCCAAACCTGGAGGCGG+TGG | 0.495410 | 3.3:+4991615 | MS.gene63530:CDS |
| CTCTACTTCTTTATACCCTA+GGG | 0.501080 | 3.3:-4994246 | None:intergenic |
| AGCTCTGCCAAACCTGGAGG+CGG | 0.503246 | 3.3:+4991612 | MS.gene63530:CDS |
| CGTTACCTTCATCATAAACA+TGG | 0.504190 | 3.3:-4991755 | None:intergenic |
| ATTCTGCAGCAAATCAGTCT+TGG | 0.510067 | 3.3:+4991868 | MS.gene63530:CDS |
| GTCCAGGAGGCACTCGAAGA+AGG | 0.512471 | 3.3:+4991975 | MS.gene63530:CDS |
| TATGGATTTGGGAAGTGAAT+CGG | 0.513309 | 3.3:+4991002 | None:intergenic |
| GTGATGCAGAACTTGAAGGT+TGG | 0.516204 | 3.3:+4994335 | MS.gene63530:CDS |
| GAAGAACAAAGCAGAAGAGT+TGG | 0.517816 | 3.3:+4994463 | MS.gene63530:CDS |
| GAAGAATCTGCCAACACCCT+AGG | 0.518108 | 3.3:+4994230 | MS.gene63530:CDS |
| TGCGATCCGGGGTTCTAGTA+CGG | 0.518637 | 3.3:+4991392 | MS.gene63530:CDS |
| TCCAAAGGGGCACCAAGAAA+GGG | 0.519135 | 3.3:+4991168 | MS.gene63530:CDS |
| TTCGAAGAATTTAGCGAACT+CGG | 0.524871 | 3.3:+4991554 | MS.gene63530:CDS |
| CACGATGAAAATGGAATCAA+GGG | 0.530177 | 3.3:+4991045 | MS.gene63530:CDS |
| TGTTGCTGAATTGGGTAGTG+AGG | 0.530555 | 3.3:+4991134 | MS.gene63530:CDS |
| CAAAACCTTACCGGATTCAA+CGG | 0.533729 | 3.3:-4991253 | None:intergenic |
| CCGAAGGTGAGGCATGAGAA+AGG | 0.536005 | 3.3:+4991510 | MS.gene63530:CDS |
| CAAAAGGTTCAGCAAGGAAA+GGG | 0.549338 | 3.3:+4991579 | MS.gene63530:CDS |
| GAGTGCCGTTGAATCCGGTA+AGG | 0.550326 | 3.3:+4991248 | MS.gene63530:CDS |
| TGCAGAAGTCCAGAAATTCA+GGG | 0.553635 | 3.3:+4993914 | MS.gene63530:intron |
| AAGTGTAGCAGTGCATCTGC+TGG | 0.554085 | 3.3:+4993978 | MS.gene63530:CDS |
| GTGCCTCCTGGACAGCCTGA+AGG | 0.555996 | 3.3:-4991965 | None:intergenic |
| AGGAAGCTGTGAATTCCAAA+GGG | 0.556817 | 3.3:+4991154 | MS.gene63530:CDS |
| TCAAAAGGTTCAGCAAGGAA+AGG | 0.565767 | 3.3:+4991578 | MS.gene63530:CDS |
| AATTTGTATTCCTACTACCA+CGG | 0.566898 | 3.3:-4991533 | None:intergenic |
| TAGGCAAGGTGTCTTTAGTA+CGG | 0.569614 | 3.3:+4991701 | MS.gene63530:CDS |
| GCATCACCTTAGCGATGGCT+AGG | 0.570346 | 3.3:-4994319 | None:intergenic |
| TTCACCAAGGAAGATGAAGC+TGG | 0.571532 | 3.3:+4991804 | MS.gene63530:CDS |
| GGTGTAAAACCAGATCAAGA+AGG | 0.572427 | 3.3:+4991108 | MS.gene63530:CDS |
| TAGGCAAAAGGTTGAAGCTG+AGG | 0.572695 | 3.3:+4994289 | MS.gene63530:CDS |
| GTGAGGCATGAGAAAGGCCG+TGG | 0.577436 | 3.3:+4991516 | MS.gene63530:CDS |
| TACTGCAGCTAGTGAGCCGA+AGG | 0.577851 | 3.3:+4991494 | MS.gene63530:CDS |
| AAGAATCTGCCAACACCCTA+GGG | 0.578296 | 3.3:+4994231 | MS.gene63530:CDS |
| ACTAGTAATGGAAAACATAG+TGG | 0.580430 | 3.3:+4991726 | MS.gene63530:CDS |
| GAGGAAGCTGTGAATTCCAA+AGG | 0.581063 | 3.3:+4991153 | MS.gene63530:CDS |
| TCTGATGGGCATGCGATCCG+GGG | 0.581710 | 3.3:+4991381 | MS.gene63530:CDS |
| TAGAATCCGTACTAGAACCC+CGG | 0.582400 | 3.3:-4991398 | None:intergenic |
| GGGAAACTTACCACTACTCA+AGG | 0.584730 | 3.3:-4994204 | None:intergenic |
| CTTGAAACAGCCTTGAGTAG+TGG | 0.587229 | 3.3:+4994194 | MS.gene63530:CDS |
| AGAAATGGAAGAGAATTAGG+AGG | 0.592844 | 3.3:+4991202 | MS.gene63530:CDS |
| AGGTTCAGCAAGGAAAGGGA+TGG | 0.596261 | 3.3:+4991583 | MS.gene63530:CDS |
| GGGGCACCAAGAAAGGGTGT+TGG | 0.598134 | 3.3:+4991174 | MS.gene63530:CDS |
| ACGGATTCTAGATATGCAGT+TGG | 0.598937 | 3.3:+4991411 | MS.gene63530:CDS |
| CTCCTGATAGACTCGATCAA+AGG | 0.598987 | 3.3:-4991942 | None:intergenic |
| AGAAGTAGAGTACGAGATCG+AGG | 0.604863 | 3.3:+4994259 | MS.gene63530:CDS |
| GATGCAGAACTTGAAGGTTG+GGG | 0.607398 | 3.3:+4994337 | MS.gene63530:CDS |
| GGATTTGGGAAGTGAATCGG+TGG | 0.608119 | 3.3:+4991005 | MS.gene63530:CDS |
| GTTACCTTCATCATAAACAT+GGG | 0.610858 | 3.3:-4991754 | None:intergenic |
| ACTGTCCGAAAATCAAGCAC+AGG | 0.613967 | 3.3:+4994397 | MS.gene63530:CDS |
| CAGCTAGTGAGCCGAAGGTG+AGG | 0.618013 | 3.3:+4991499 | MS.gene63530:CDS |
| ACTCGATATCTGAAACTCCA+AGG | 0.620943 | 3.3:-4994087 | None:intergenic |
| ATTCGGAGAATAGTGAGGAT+CGG | 0.621517 | 3.3:+4991457 | MS.gene63530:CDS |
| AGCAAGCTGGAGGAGTTGCA+AGG | 0.625840 | 3.3:+4994137 | MS.gene63530:CDS |
| TCGAGATCCAACTATAGGCA+AGG | 0.632294 | 3.3:+4991687 | MS.gene63530:CDS |
| TGGAAGAGTCAAGTTTGAGA+AGG | 0.633310 | 3.3:+4991635 | MS.gene63530:CDS |
| TTACCTTCATCATAAACATG+GGG | 0.634623 | 3.3:-4991753 | None:intergenic |
| TGAATACCTAGCCATCGCTA+AGG | 0.643417 | 3.3:+4994313 | MS.gene63530:CDS |
| GAGCCTTCAGGCTGTCCAGG+AGG | 0.644074 | 3.3:+4991962 | MS.gene63530:CDS |
| GTTCTGCATCACCTTAGCGA+TGG | 0.647863 | 3.3:-4994324 | None:intergenic |
| ACAGTTATCCCAAAATTCTG+GGG | 0.661233 | 3.3:+4994613 | MS.gene63530:intron |
| GAGAGCTCTGCCAAACCTGG+AGG | 0.671638 | 3.3:+4991609 | MS.gene63530:CDS |
| TCGGCTCAAAAGGTTCAGCA+AGG | 0.672328 | 3.3:+4991573 | MS.gene63530:CDS |
| GACTGATTCGGAGAATAGTG+AGG | 0.677186 | 3.3:+4991452 | MS.gene63530:CDS |
| GTTTATGATGAAGGTAACGA+TGG | 0.686054 | 3.3:+4991759 | MS.gene63530:CDS |
| TACTAATGAACATTTCACCA+AGG | 0.694692 | 3.3:+4991791 | MS.gene63530:CDS |
| TACCTTCATCATAAACATGG+GGG | 0.700103 | 3.3:-4991752 | None:intergenic |
| GGAAGCTGTGAATTCCAAAG+GGG | 0.746487 | 3.3:+4991155 | MS.gene63530:CDS |
| AATTTGAGTGAAAATCTGCG+CGG | 0.854563 | 3.3:+4991306 | MS.gene63530:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATTAAAAATGAAATAATA+TGG | - | chr3.3:4992897-4992916 | None:intergenic | 10.0% |
| !! | ATAAAGTAATATGTATTATA+AGG | - | chr3.3:4992526-4992545 | None:intergenic | 10.0% |
| !! | AATACTTTCATAAAACATAA+TGG | - | chr3.3:4993055-4993074 | None:intergenic | 15.0% |
| !! | AGATTTACAATTTACATTAT+TGG | + | chr3.3:4994361-4994380 | MS.gene63530:CDS | 15.0% |
| !! | GTATGAATCATAAATATAAT+TGG | + | chr3.3:4993574-4993593 | MS.gene63530:intron | 15.0% |
| !! | GTTAATTAGTTATGTTAATA+AGG | - | chr3.3:4992473-4992492 | None:intergenic | 15.0% |
| !!! | ATATGAAATAATCTTGTTAT+TGG | + | chr3.3:4993228-4993247 | MS.gene63530:intron | 15.0% |
| !!! | GTGATATGTTTTATTTTTAT+GGG | + | chr3.3:4992015-4992034 | MS.gene63530:intron | 15.0% |
| !!! | TATTTCATATTTTCTACAAT+AGG | - | chr3.3:4993218-4993237 | None:intergenic | 15.0% |
| !!! | TGTGATATGTTTTATTTTTA+TGG | + | chr3.3:4992014-4992033 | MS.gene63530:intron | 15.0% |
| !!! | TTTTCATTTGCTTAAATTTA+TGG | + | chr3.3:4993701-4993720 | MS.gene63530:intron | 15.0% |
| !! | AAACATATCACAAAATAAGA+CGG | - | chr3.3:4992006-4992025 | None:intergenic | 20.0% |
| !! | AGACAAACAAATTATATAGT+AGG | - | chr3.3:4992227-4992246 | None:intergenic | 20.0% |
| !! | ATCTTTATGATGTTTCTTAA+TGG | - | chr3.3:4993460-4993479 | None:intergenic | 20.0% |
| !! | GAATTATATGTTTAGAGAAA+AGG | + | chr3.3:4993182-4993201 | MS.gene63530:intron | 20.0% |
| !! | GTTGTTAATATAATGTCAAA+CGG | + | chr3.3:4992717-4992736 | MS.gene63530:intron | 20.0% |
| !!! | ATCAGTGAAATATTTTGAAT+CGG | - | chr3.3:4992449-4992468 | None:intergenic | 20.0% |
| !!! | ATTGGACTTAAATGATTTTT+AGG | + | chr3.3:4993552-4993571 | MS.gene63530:intron | 20.0% |
| ! | AAATTAGGGTTTCAATTTGA+TGG | + | chr3.3:4991078-4991097 | MS.gene63530:CDS | 25.0% |
| ! | AAGTCCAATATCTTTCTTAA+TGG | - | chr3.3:4993361-4993380 | None:intergenic | 25.0% |
| ! | AATAAGTGCAAAATAGCATA+TGG | - | chr3.3:4993683-4993702 | None:intergenic | 25.0% |
| ! | AATGAAATAATATGGCCAAA+TGG | - | chr3.3:4992889-4992908 | None:intergenic | 25.0% |
| ! | ATATATGTTGCATTTACTCA+AGG | - | chr3.3:4992109-4992128 | None:intergenic | 25.0% |
| ! | CAAACCATTAAGAAAGATAT+TGG | + | chr3.3:4993354-4993373 | MS.gene63530:intron | 25.0% |
| ! | TGATGATAGTTTAGTAATTG+AGG | + | chr3.3:4994496-4994515 | MS.gene63530:CDS | 25.0% |
| !! | AGATATTGGACTTGATTTTT+AGG | + | chr3.3:4993368-4993387 | MS.gene63530:intron | 25.0% |
| !! | GCATATTATTTCTTGAGAAT+AGG | + | chr3.3:4992835-4992854 | MS.gene63530:intron | 25.0% |
| !! | TGATGTTAATCTTGTTCTTT+TGG | + | chr3.3:4994579-4994598 | MS.gene63530:intron | 25.0% |
| !!! | AAAGTATTGAACTGAATGTT+GGG | + | chr3.3:4993067-4993086 | MS.gene63530:intron | 25.0% |
| !!! | GATTTTTAGGTATGAATGAT+TGG | + | chr3.3:4993381-4993400 | MS.gene63530:intron | 25.0% |
| !!! | GGTTTTAAATATAGTACTGT+TGG | - | chr3.3:4992669-4992688 | None:intergenic | 25.0% |
| !!! | TGAAATAATCTTGTTATTGG+TGG | + | chr3.3:4993231-4993250 | MS.gene63530:intron | 25.0% |
| !!! | TTTCAATTTGATGGCAATTT+TGG | + | chr3.3:4991087-4991106 | MS.gene63530:CDS | 25.0% |
| AATTAGGAGGAATGTTGTTA+GGG | + | chr3.3:4991215-4991234 | MS.gene63530:CDS | 30.0% | |
| AATTTGTATTCCTACTACCA+CGG | - | chr3.3:4991536-4991555 | None:intergenic | 30.0% | |
| AGATTAACATCATGAACTGT+AGG | - | chr3.3:4994571-4994590 | None:intergenic | 30.0% | |
| ATAAAGATGTAGATCAGATG+GGG | + | chr3.3:4993472-4993491 | MS.gene63530:intron | 30.0% | |
| ATATGTTTAGAGAAAAGGCA+GGG | + | chr3.3:4993187-4993206 | MS.gene63530:intron | 30.0% | |
| ATCATAAGATCCAAGTAAGA+TGG | + | chr3.3:4992955-4992974 | MS.gene63530:intron | 30.0% | |
| ATTAAACAGAGCCAAATACA+TGG | - | chr3.3:4992299-4992318 | None:intergenic | 30.0% | |
| CAACAAACTCAATTGCAAAT+TGG | - | chr3.3:4992068-4992087 | None:intergenic | 30.0% | |
| CATAAAGATGTAGATCAGAT+GGG | + | chr3.3:4993471-4993490 | MS.gene63530:intron | 30.0% | |
| GGAAAATTCTATTTCCAGTT+TGG | + | chr3.3:4991656-4991675 | MS.gene63530:CDS | 30.0% | |
| GGTGTTAAGGAAAAAAATGA+CGG | + | chr3.3:4991327-4991346 | MS.gene63530:CDS | 30.0% | |
| GTGTTAAGGAAAAAAATGAC+GGG | + | chr3.3:4991328-4991347 | MS.gene63530:CDS | 30.0% | |
| GTTACCTTCATCATAAACAT+GGG | - | chr3.3:4991757-4991776 | None:intergenic | 30.0% | |
| TACAAATTGGTTATCAGCAA+TGG | - | chr3.3:4993886-4993905 | None:intergenic | 30.0% | |
| TACTAATGAACATTTCACCA+AGG | + | chr3.3:4991791-4991810 | MS.gene63530:CDS | 30.0% | |
| TAGACAGTTGAATTCAATCT+TGG | - | chr3.3:4992169-4992188 | None:intergenic | 30.0% | |
| TATATGTTTAGAGAAAAGGC+AGG | + | chr3.3:4993186-4993205 | MS.gene63530:intron | 30.0% | |
| TATGCCAATAAACTACTTTC+AGG | - | chr3.3:4993806-4993825 | None:intergenic | 30.0% | |
| TCATAAAGATGTAGATCAGA+TGG | + | chr3.3:4993470-4993489 | MS.gene63530:intron | 30.0% | |
| TGAAGAAATGGAAGAGAATT+AGG | + | chr3.3:4991199-4991218 | MS.gene63530:CDS | 30.0% | |
| TGGAAGAAAAGAATTGAGTA+TGG | + | chr3.3:4993854-4993873 | MS.gene63530:intron | 30.0% | |
| TTACCTTCATCATAAACATG+GGG | - | chr3.3:4991756-4991775 | None:intergenic | 30.0% | |
| TTGTCAACAAACTGATGATA+AGG | - | chr3.3:4992134-4992153 | None:intergenic | 30.0% | |
| TTTAGTACGGTTACTAGTAA+TGG | + | chr3.3:4991714-4991733 | MS.gene63530:CDS | 30.0% | |
| ! | ACTAGTAATGGAAAACATAG+TGG | + | chr3.3:4991726-4991745 | MS.gene63530:CDS | 30.0% |
| ! | GAAACAACATGTAAACCTTT+TGG | + | chr3.3:4994112-4994131 | MS.gene63530:CDS | 30.0% |
| ! | TTATAAGGTATCAGTGAGTA+AGG | - | chr3.3:4992511-4992530 | None:intergenic | 30.0% |
| ! | TTTAGAGCCTTAAGTTATGA+TGG | + | chr3.3:4992575-4992594 | MS.gene63530:intron | 30.0% |
| !! | AATTGAGTTTGTTGTGTTGT+CGG | + | chr3.3:4992074-4992093 | MS.gene63530:intron | 30.0% |
| !! | ATAATCTTGTTATTGGTGGT+TGG | + | chr3.3:4993235-4993254 | MS.gene63530:intron | 30.0% |
| !! | ATCATCAGTTTGTTGACAAT+TGG | + | chr3.3:4992135-4992154 | MS.gene63530:intron | 30.0% |
| !! | GAAAGTATTGAACTGAATGT+TGG | + | chr3.3:4993066-4993085 | MS.gene63530:intron | 30.0% |
| !! | TAATCTTGTTATTGGTGGTT+GGG | + | chr3.3:4993236-4993255 | MS.gene63530:intron | 30.0% |
| !!! | ATGAAGTTCTGTCTTTTTTC+TGG | + | chr3.3:4993834-4993853 | MS.gene63530:intron | 30.0% |
| !!! | CTGTTTAATCAGTTTTGGTT+TGG | + | chr3.3:4992310-4992329 | MS.gene63530:intron | 30.0% |
| !!! | TTGTTCTCACTTTTTTCTTC+AGG | - | chr3.3:4991900-4991919 | None:intergenic | 30.0% |
| AAGGGTTGTGATGAGAAATT+AGG | + | chr3.3:4991063-4991082 | MS.gene63530:CDS | 35.0% | |
| AATTGCAAATTGGCAACAAG+AGG | - | chr3.3:4992058-4992077 | None:intergenic | 35.0% | |
| AATTTGAGTGAAAATCTGCG+CGG | + | chr3.3:4991306-4991325 | MS.gene63530:CDS | 35.0% | |
| ACAGTTATCCCAAAATTCTG+GGG | + | chr3.3:4994613-4994632 | MS.gene63530:intron | 35.0% | |
| ACATGACTTGAGTCAACAAT+AGG | + | chr3.3:4993416-4993435 | MS.gene63530:intron | 35.0% | |
| ACTCTACTTCTTTATACCCT+AGG | - | chr3.3:4994250-4994269 | None:intergenic | 35.0% | |
| AGAAATGGAAGAGAATTAGG+AGG | + | chr3.3:4991202-4991221 | MS.gene63530:CDS | 35.0% | |
| AGAAGGAATTGTTGCTGAAT+TGG | + | chr3.3:4991125-4991144 | MS.gene63530:CDS | 35.0% | |
| AGGGTTGTGATGAGAAATTA+GGG | + | chr3.3:4991064-4991083 | MS.gene63530:CDS | 35.0% | |
| CACAGTTATCCCAAAATTCT+GGG | + | chr3.3:4994612-4994631 | MS.gene63530:intron | 35.0% | |
| CACGATGAAAATGGAATCAA+GGG | + | chr3.3:4991045-4991064 | MS.gene63530:CDS | 35.0% | |
| CAGAAATGAGAATACTGCAT+TGG | + | chr3.3:4993123-4993142 | MS.gene63530:intron | 35.0% | |
| CATGTAGAGAAATAAACTGC+TGG | - | chr3.3:4992768-4992787 | None:intergenic | 35.0% | |
| CGTAAAGATGTAGATCAGAT+GGG | + | chr3.3:4993291-4993310 | MS.gene63530:intron | 35.0% | |
| CGTTACCTTCATCATAAACA+TGG | - | chr3.3:4991758-4991777 | None:intergenic | 35.0% | |
| CTCTACTTCTTTATACCCTA+GGG | - | chr3.3:4994249-4994268 | None:intergenic | 35.0% | |
| GAACTAAATATGCAGGACAA+CGG | - | chr3.3:4992690-4992709 | None:intergenic | 35.0% | |
| GAAGGAATTGTTGCTGAATT+GGG | + | chr3.3:4991126-4991145 | MS.gene63530:CDS | 35.0% | |
| GAAGTGAATCACGATGAAAA+TGG | + | chr3.3:4991036-4991055 | MS.gene63530:CDS | 35.0% | |
| GAATTAGGAGGAATGTTGTT+AGG | + | chr3.3:4991214-4991233 | MS.gene63530:CDS | 35.0% | |
| GCATCATTGTTTCCTATTGT+TGG | - | chr3.3:4993619-4993638 | None:intergenic | 35.0% | |
| GTAAAGATGTAGATCAGATG+GGG | + | chr3.3:4993292-4993311 | MS.gene63530:intron | 35.0% | |
| GTGTAGACCATCATAACTTA+AGG | - | chr3.3:4992585-4992604 | None:intergenic | 35.0% | |
| GTTGGAATGGATCAATGTTT+CGG | + | chr3.3:4992977-4992996 | MS.gene63530:intron | 35.0% | |
| GTTTATGATGAAGGTAACGA+TGG | + | chr3.3:4991759-4991778 | MS.gene63530:CDS | 35.0% | |
| TAAAGATGTAGATCAGATGG+GGG | + | chr3.3:4993293-4993312 | MS.gene63530:intron | 35.0% | |
| TAAGATCCAAGTAAGATGGT+TGG | + | chr3.3:4992959-4992978 | MS.gene63530:intron | 35.0% | |
| TACCTTCATCATAAACATGG+GGG | - | chr3.3:4991755-4991774 | None:intergenic | 35.0% | |
| TATCAATCTCCCTGAATTTC+TGG | - | chr3.3:4993926-4993945 | None:intergenic | 35.0% | |
| TCACAGTTATCCCAAAATTC+TGG | + | chr3.3:4994611-4994630 | MS.gene63530:intron | 35.0% | |
| TCACGATGAAAATGGAATCA+AGG | + | chr3.3:4991044-4991063 | MS.gene63530:CDS | 35.0% | |
| TCATTTGTACATGACTTGAG+AGG | + | chr3.3:4992862-4992881 | MS.gene63530:intron | 35.0% | |
| TCGTAAAGATGTAGATCAGA+TGG | + | chr3.3:4993290-4993309 | MS.gene63530:intron | 35.0% | |
| TGGCACGATATAAAATGAGA+AGG | - | chr3.3:4992274-4992293 | None:intergenic | 35.0% | |
| TTCGAAGAATTTAGCGAACT+CGG | + | chr3.3:4991554-4991573 | MS.gene63530:CDS | 35.0% | |
| TTGGAATGGATCAATGTTTC+GGG | + | chr3.3:4992978-4992997 | MS.gene63530:intron | 35.0% | |
| ! | GGAATGTAGTGTTTTCTGAT+GGG | + | chr3.3:4991367-4991386 | MS.gene63530:CDS | 35.0% |
| ! | GTCTAGCTTGTAAGTATTCT+TGG | + | chr3.3:4992622-4992641 | MS.gene63530:intron | 35.0% |
| ! | TGACTAGCAGTTGCAAATTT+TGG | + | chr3.3:4992409-4992428 | MS.gene63530:intron | 35.0% |
| !! | AATCTCATGCATTGACTTGA+TGG | + | chr3.3:4992912-4992931 | MS.gene63530:intron | 35.0% |
| !! | AGAAGGTTTGTTAGACAGTT+AGG | - | chr3.3:4992257-4992276 | None:intergenic | 35.0% |
| !! | GAAGGTTTGTTAGACAGTTA+GGG | - | chr3.3:4992256-4992275 | None:intergenic | 35.0% |
| !! | TGGCTCTGTTTAATCAGTTT+TGG | + | chr3.3:4992305-4992324 | MS.gene63530:intron | 35.0% |
| !! | TTTTGAAGAGGGGTTTATCT+GGG | + | chr3.3:4991271-4991290 | MS.gene63530:CDS | 35.0% |
| !!! | TTGGATCTGGTTTTGTTGTT+GGG | + | chr3.3:4991430-4991449 | MS.gene63530:CDS | 35.0% |
| !!! | TTTTGTTGTTGGGACTGATT+CGG | + | chr3.3:4991440-4991459 | MS.gene63530:CDS | 35.0% |
| AAAGACACCTTGCCTATAGT+TGG | - | chr3.3:4991697-4991716 | None:intergenic | 40.0% | |
| AACCCCCATGTTTATGATGA+AGG | + | chr3.3:4991750-4991769 | MS.gene63530:CDS | 40.0% | |
| AAGGAAGATGAAGCTGGTTA+TGG | + | chr3.3:4991810-4991829 | MS.gene63530:CDS | 40.0% | |
| ACAGAGCCAAATACATGGTT+TGG | - | chr3.3:4992294-4992313 | None:intergenic | 40.0% | |
| ACATGACTTGAGCCAACAAT+AGG | + | chr3.3:4993604-4993623 | MS.gene63530:intron | 40.0% | |
| ACGGATTCTAGATATGCAGT+TGG | + | chr3.3:4991411-4991430 | MS.gene63530:CDS | 40.0% | |
| AGGAAACAATGATGCGAAGT+AGG | + | chr3.3:4993624-4993643 | MS.gene63530:intron | 40.0% | |
| AGGAAGCTGTGAATTCCAAA+GGG | + | chr3.3:4991154-4991173 | MS.gene63530:CDS | 40.0% | |
| ATAACCAGCTTCATCTTCCT+TGG | - | chr3.3:4991811-4991830 | None:intergenic | 40.0% | |
| ATCCTTTGATCGAGTCTATC+AGG | + | chr3.3:4991940-4991959 | MS.gene63530:CDS | 40.0% | |
| ATCGTGCCAAACCATGTATT+TGG | + | chr3.3:4992285-4992304 | MS.gene63530:intron | 40.0% | |
| ATTCGGAGAATAGTGAGGAT+CGG | + | chr3.3:4991457-4991476 | MS.gene63530:CDS | 40.0% | |
| ATTCTGCAGCAAATCAGTCT+TGG | + | chr3.3:4991868-4991887 | MS.gene63530:CDS | 40.0% | |
| CAAAACCTTACCGGATTCAA+CGG | - | chr3.3:4991256-4991275 | None:intergenic | 40.0% | |
| CAAAAGGTTCAGCAAGGAAA+GGG | + | chr3.3:4991579-4991598 | MS.gene63530:CDS | 40.0% | |
| CAACTGTCTATTAAGCTGCT+AGG | + | chr3.3:4992179-4992198 | MS.gene63530:intron | 40.0% | |
| CAGATTCGAGATCCAACTAT+AGG | + | chr3.3:4991682-4991701 | MS.gene63530:CDS | 40.0% | |
| CAGCACAGAACTAAATATGC+AGG | - | chr3.3:4992697-4992716 | None:intergenic | 40.0% | |
| CTATCTAGTAGCAGAGTTCA+AGG | - | chr3.3:4992338-4992357 | None:intergenic | 40.0% | |
| GAAGAACAAAGCAGAAGAGT+TGG | + | chr3.3:4994463-4994482 | MS.gene63530:CDS | 40.0% | |
| GATCATAGATGCAGAGAGTA+AGG | + | chr3.3:4994430-4994449 | MS.gene63530:CDS | 40.0% | |
| GATCTTCAGCACTTGTAGAT+TGG | - | chr3.3:4991923-4991942 | None:intergenic | 40.0% | |
| GCAACAATTCCTTCTTGATC+TGG | - | chr3.3:4991120-4991139 | None:intergenic | 40.0% | |
| GCTGCCTGAAAGTAGTTTAT+TGG | + | chr3.3:4993799-4993818 | MS.gene63530:intron | 40.0% | |
| GGTGTAAAACCAGATCAAGA+AGG | + | chr3.3:4991108-4991127 | MS.gene63530:CDS | 40.0% | |
| TAAGGTGATGCAGAACTTGA+AGG | + | chr3.3:4994331-4994350 | MS.gene63530:CDS | 40.0% | |
| TATGATGGTCTACACTCTAC+TGG | + | chr3.3:4992590-4992609 | MS.gene63530:intron | 40.0% | |
| TCAAAAGGTTCAGCAAGGAA+AGG | + | chr3.3:4991578-4991597 | MS.gene63530:CDS | 40.0% | |
| TCCAAGTAAGATGGTTGGAA+TGG | + | chr3.3:4992964-4992983 | MS.gene63530:intron | 40.0% | |
| TCCATTCCAACCATCTTACT+TGG | - | chr3.3:4992968-4992987 | None:intergenic | 40.0% | |
| TCTAGATATGCAGTTGGATC+TGG | + | chr3.3:4991417-4991436 | MS.gene63530:CDS | 40.0% | |
| TCTCGAATCTGAATCCAAAC+TGG | - | chr3.3:4991673-4991692 | None:intergenic | 40.0% | |
| TGACTTGATGGAGAGATAGA+GGG | + | chr3.3:4992924-4992943 | MS.gene63530:intron | 40.0% | |
| TGATGCAGAACTTGAAGGTT+GGG | + | chr3.3:4994336-4994355 | MS.gene63530:CDS | 40.0% | |
| TGCAGAAGTCCAGAAATTCA+GGG | + | chr3.3:4993914-4993933 | MS.gene63530:intron | 40.0% | |
| TGGAAGAGTCAAGTTTGAGA+AGG | + | chr3.3:4991635-4991654 | MS.gene63530:CDS | 40.0% | |
| TGGTGAAGATGAAGATCTAC+AGG | + | chr3.3:4991842-4991861 | MS.gene63530:CDS | 40.0% | |
| TTCAATCCAACACCCTTTCT+TGG | - | chr3.3:4991183-4991202 | None:intergenic | 40.0% | |
| TTCTGCAGCAAATCAGTCTT+GGG | + | chr3.3:4991869-4991888 | MS.gene63530:CDS | 40.0% | |
| TTCTTTATACCCTAGGGTGT+TGG | - | chr3.3:4994243-4994262 | None:intergenic | 40.0% | |
| TTGCAGAAGTCCAGAAATTC+AGG | + | chr3.3:4993913-4993932 | MS.gene63530:intron | 40.0% | |
| ! | ACGAGATCGAGGATCTTTTT+AGG | + | chr3.3:4994270-4994289 | MS.gene63530:CDS | 40.0% |
| ! | ACTCGATATCTGAAACTCCA+AGG | - | chr3.3:4994090-4994109 | None:intergenic | 40.0% |
| ! | CACAACAACCCCAGAATTTT+GGG | - | chr3.3:4994624-4994643 | None:intergenic | 40.0% |
| ! | CTGCAAGAGCACATACAAAT+TGG | - | chr3.3:4993899-4993918 | None:intergenic | 40.0% |
| ! | GAGAACCTGTGCTTGATTTT+CGG | - | chr3.3:4994405-4994424 | None:intergenic | 40.0% |
| ! | GCTGCAGAAAAGAGTATGTA+AGG | + | chr3.3:4994529-4994548 | MS.gene63530:intron | 40.0% |
| ! | GGGAATGTAGTGTTTTCTGA+TGG | + | chr3.3:4991366-4991385 | MS.gene63530:CDS | 40.0% |
| ! | GTGTTGGCAGATTCTTCTTT+GGG | - | chr3.3:4994227-4994246 | None:intergenic | 40.0% |
| ! | TAGGCAAGGTGTCTTTAGTA+CGG | + | chr3.3:4991701-4991720 | MS.gene63530:CDS | 40.0% |
| ! | TTGACTTGATGGAGAGATAG+AGG | + | chr3.3:4992923-4992942 | MS.gene63530:intron | 40.0% |
| !! | AAACCTTTTGGAAAGCAAGC+TGG | + | chr3.3:4994124-4994143 | MS.gene63530:CDS | 40.0% |
| !! | AGGGTGTTGGATTGAAGAAA+TGG | + | chr3.3:4991187-4991206 | MS.gene63530:CDS | 40.0% |
| !! | CGAGGATCTTTTTAGGCAAA+AGG | + | chr3.3:4994277-4994296 | MS.gene63530:CDS | 40.0% |
| !! | CTGCATATTTAGTTCTGTGC+TGG | + | chr3.3:4992695-4992714 | MS.gene63530:intron | 40.0% |
| !!! | AATCCGGTAAGGTTTTGAAG+AGG | + | chr3.3:4991259-4991278 | MS.gene63530:CDS | 40.0% |
| !!! | ATCCGGTAAGGTTTTGAAGA+GGG | + | chr3.3:4991260-4991279 | MS.gene63530:CDS | 40.0% |
| !!! | GTTGGATCTGGTTTTGTTGT+TGG | + | chr3.3:4991429-4991448 | MS.gene63530:CDS | 40.0% |
| !!! | GTTTTGAAGAGGGGTTTATC+TGG | + | chr3.3:4991270-4991289 | MS.gene63530:CDS | 40.0% |
| AAGAATCTGCCAACACCCTA+GGG | + | chr3.3:4994231-4994250 | MS.gene63530:CDS | 45.0% | |
| ACCCCTCTTCAAAACCTTAC+CGG | - | chr3.3:4991265-4991284 | None:intergenic | 45.0% | |
| ACTGCTGGAGAAACTTTCCA+AGG | - | chr3.3:4992753-4992772 | None:intergenic | 45.0% | |
| ACTGTCCGAAAATCAAGCAC+AGG | + | chr3.3:4994397-4994416 | MS.gene63530:CDS | 45.0% | |
| ACTTGATGGAGAGATAGAGG+GGG | + | chr3.3:4992926-4992945 | MS.gene63530:intron | 45.0% | |
| AGAAGTAGAGTACGAGATCG+AGG | + | chr3.3:4994259-4994278 | MS.gene63530:CDS | 45.0% | |
| CATGACTTGAGAGGTCCATT+TGG | + | chr3.3:4992871-4992890 | MS.gene63530:intron | 45.0% | |
| CTCCTGATAGACTCGATCAA+AGG | - | chr3.3:4991945-4991964 | None:intergenic | 45.0% | |
| CTTGAAACAGCCTTGAGTAG+TGG | + | chr3.3:4994194-4994213 | MS.gene63530:CDS | 45.0% | |
| GAATGGATCAATGTTTCGGG+TGG | + | chr3.3:4992981-4993000 | MS.gene63530:intron | 45.0% | |
| GACTTGATGGAGAGATAGAG+GGG | + | chr3.3:4992925-4992944 | MS.gene63530:intron | 45.0% | |
| GAGGAAGCTGTGAATTCCAA+AGG | + | chr3.3:4991153-4991172 | MS.gene63530:CDS | 45.0% | |
| GATGCAGAACTTGAAGGTTG+GGG | + | chr3.3:4994337-4994356 | MS.gene63530:CDS | 45.0% | |
| GCTGGTTATGGCAACGAAAA+TGG | + | chr3.3:4991822-4991841 | MS.gene63530:CDS | 45.0% | |
| GGAACTTGAAGCAGCTTGAT+TGG | - | chr3.3:4994069-4994088 | None:intergenic | 45.0% | |
| GGAAGCTGTGAATTCCAAAG+GGG | + | chr3.3:4991155-4991174 | MS.gene63530:CDS | 45.0% | |
| GGGAAACTTACCACTACTCA+AGG | - | chr3.3:4994207-4994226 | None:intergenic | 45.0% | |
| GGTATCACTGCTGTTGATCT+TGG | + | chr3.3:4993999-4994018 | MS.gene63530:CDS | 45.0% | |
| GTGATGCAGAACTTGAAGGT+TGG | + | chr3.3:4994335-4994354 | MS.gene63530:CDS | 45.0% | |
| TAGAATCCGTACTAGAACCC+CGG | - | chr3.3:4991401-4991420 | None:intergenic | 45.0% | |
| TAGGCAAAAGGTTGAAGCTG+AGG | + | chr3.3:4994289-4994308 | MS.gene63530:CDS | 45.0% | |
| TCGAGATCCAACTATAGGCA+AGG | + | chr3.3:4991687-4991706 | MS.gene63530:CDS | 45.0% | |
| TCTTCCTCAACGTCAAGCAA+TGG | - | chr3.3:4993324-4993343 | None:intergenic | 45.0% | |
| TGAATACCTAGCCATCGCTA+AGG | + | chr3.3:4994313-4994332 | MS.gene63530:CDS | 45.0% | |
| TGCTTGCTTCGAAGGATTCT+AGG | + | chr3.3:4994162-4994181 | MS.gene63530:CDS | 45.0% | |
| TGTTGCTGAATTGGGTAGTG+AGG | + | chr3.3:4991134-4991153 | MS.gene63530:CDS | 45.0% | |
| TGTTTAGAGAAAAGGCAGGG+TGG | + | chr3.3:4993190-4993209 | MS.gene63530:intron | 45.0% | |
| TTCACCAAGGAAGATGAAGC+TGG | + | chr3.3:4991804-4991823 | MS.gene63530:CDS | 45.0% | |
| TTTAGCGAACTCGGCTCAAA+AGG | + | chr3.3:4991563-4991582 | MS.gene63530:CDS | 45.0% | |
| ! | AATTCGAGTGCCGTTGAATC+CGG | + | chr3.3:4991243-4991262 | MS.gene63530:CDS | 45.0% |
| ! | GCACAACAACCCCAGAATTT+TGG | - | chr3.3:4994625-4994644 | None:intergenic | 45.0% |
| ! | TCAAGCTGCTTCAAGTTCCT+TGG | + | chr3.3:4994070-4994089 | MS.gene63530:CDS | 45.0% |
| ! | TGAAAATCTGCGCGGTGTTA+AGG | + | chr3.3:4991314-4991333 | MS.gene63530:CDS | 45.0% |
| !! | GACTGATTCGGAGAATAGTG+AGG | + | chr3.3:4991452-4991471 | MS.gene63530:CDS | 45.0% |
| !! | GGTGTTGGCAGATTCTTCTT+TGG | - | chr3.3:4994228-4994247 | None:intergenic | 45.0% |
| !!! | TCCGGTAAGGTTTTGAAGAG+GGG | + | chr3.3:4991261-4991280 | MS.gene63530:CDS | 45.0% |
| AAGAGGGGTTTATCTGGGTC+TGG | + | chr3.3:4991276-4991295 | MS.gene63530:CDS | 50.0% | |
| AAGTGTAGCAGTGCATCTGC+TGG | + | chr3.3:4993978-4993997 | MS.gene63530:CDS | 50.0% | |
| AGGTTCAGCAAGGAAAGGGA+TGG | + | chr3.3:4991583-4991602 | MS.gene63530:CDS | 50.0% | |
| ATGAGAAAGGCCGTGGTAGT+AGG | + | chr3.3:4991523-4991542 | MS.gene63530:CDS | 50.0% | |
| ATTGAGAGCTCTGCCAAACC+TGG | + | chr3.3:4991606-4991625 | MS.gene63530:CDS | 50.0% | |
| CAAACGGAGAATGAGCACCT+TGG | + | chr3.3:4992733-4992752 | MS.gene63530:intron | 50.0% | |
| CACTTAGCTGAGTCGTCTTC+TGG | - | chr3.3:4993963-4993982 | None:intergenic | 50.0% | |
| CCTTTCTCATGCCTCACCTT+CGG | - | chr3.3:4991513-4991532 | None:intergenic | 50.0% | |
| GAAGAATCTGCCAACACCCT+AGG | + | chr3.3:4994230-4994249 | MS.gene63530:CDS | 50.0% | |
| GATGTAGATCAGATGGGGGA+TGG | + | chr3.3:4993297-4993316 | MS.gene63530:intron | 50.0% | |
| GGATTTGGGAAGTGAATCGG+TGG | + | chr3.3:4991005-4991024 | MS.gene63530:CDS | 50.0% | |
| GTTCTGCATCACCTTAGCGA+TGG | - | chr3.3:4994327-4994346 | None:intergenic | 50.0% | |
| TCGGCTCAAAAGGTTCAGCA+AGG | + | chr3.3:4991573-4991592 | MS.gene63530:CDS | 50.0% | |
| TGGTCCATTGCTTGACGTTG+AGG | + | chr3.3:4993317-4993336 | MS.gene63530:intron | 50.0% | |
| ! | CCTCCAGCTTGCTTTCCAAA+AGG | - | chr3.3:4994130-4994149 | None:intergenic | 50.0% |
| ! | TTTCTGATGGGCATGCGATC+CGG | + | chr3.3:4991379-4991398 | MS.gene63530:CDS | 50.0% |
| !! | CCTTTTGGAAAGCAAGCTGG+AGG | + | chr3.3:4994127-4994146 | MS.gene63530:CDS | 50.0% |
| !! | TCCAAAGGGGCACCAAGAAA+GGG | + | chr3.3:4991168-4991187 | MS.gene63530:CDS | 50.0% |
| !! | TTCCAAAGGGGCACCAAGAA+AGG | + | chr3.3:4991167-4991186 | MS.gene63530:CDS | 50.0% |
| AACCTTCTTCGAGTGCCTCC+TGG | - | chr3.3:4991980-4991999 | None:intergenic | 55.0% | |
| AGCAAGCTGGAGGAGTTGCA+AGG | + | chr3.3:4994137-4994156 | MS.gene63530:CDS | 55.0% | |
| CCGAAGGTGAGGCATGAGAA+AGG | + | chr3.3:4991510-4991529 | MS.gene63530:CDS | 55.0% | |
| CGAGTCTATCAGGAGCCTTC+AGG | + | chr3.3:4991950-4991969 | MS.gene63530:CDS | 55.0% | |
| GCATCACCTTAGCGATGGCT+AGG | - | chr3.3:4994322-4994341 | None:intergenic | 55.0% | |
| TACTGCAGCTAGTGAGCCGA+AGG | + | chr3.3:4991494-4991513 | MS.gene63530:CDS | 55.0% | |
| ! | GAGTGCCGTTGAATCCGGTA+AGG | + | chr3.3:4991248-4991267 | MS.gene63530:CDS | 55.0% |
| ! | TGCGATCCGGGGTTCTAGTA+CGG | + | chr3.3:4991392-4991411 | MS.gene63530:CDS | 55.0% |
| ! | TTCTGATGGGCATGCGATCC+GGG | + | chr3.3:4991380-4991399 | MS.gene63530:CDS | 55.0% |
| !! | ACCCTTTCTTGGTGCCCCTT+TGG | - | chr3.3:4991172-4991191 | None:intergenic | 55.0% |
| ACGGGTCTTCGAGCGCGTTT+GGG | + | chr3.3:4991346-4991365 | MS.gene63530:CDS | 60.0% | |
| AGCTCTGCCAAACCTGGAGG+CGG | + | chr3.3:4991612-4991631 | MS.gene63530:CDS | 60.0% | |
| CAGCTAGTGAGCCGAAGGTG+AGG | + | chr3.3:4991499-4991518 | MS.gene63530:CDS | 60.0% | |
| GAGAGCTCTGCCAAACCTGG+AGG | + | chr3.3:4991609-4991628 | MS.gene63530:CDS | 60.0% | |
| GCAAGGCGTGCTTGCTTCGA+AGG | + | chr3.3:4994154-4994173 | MS.gene63530:CDS | 60.0% | |
| GTGAGGCATGAGAAAGGCCG+TGG | + | chr3.3:4991516-4991535 | MS.gene63530:CDS | 60.0% | |
| TCTTCCACCGCCTCCAGGTT+TGG | - | chr3.3:4991622-4991641 | None:intergenic | 60.0% | |
| TTGACTCTTCCACCGCCTCC+AGG | - | chr3.3:4991627-4991646 | None:intergenic | 60.0% | |
| ! | GGGGCACCAAGAAAGGGTGT+TGG | + | chr3.3:4991174-4991193 | MS.gene63530:CDS | 60.0% |
| ! | TCTGATGGGCATGCGATCCG+GGG | + | chr3.3:4991381-4991400 | MS.gene63530:CDS | 60.0% |
| !! | GTCCAGGAGGCACTCGAAGA+AGG | + | chr3.3:4991975-4991994 | MS.gene63530:CDS | 60.0% |
| CAGGAGCCTTCAGGCTGTCC+AGG | + | chr3.3:4991959-4991978 | MS.gene63530:CDS | 65.0% | |
| GACGGGTCTTCGAGCGCGTT+TGG | + | chr3.3:4991345-4991364 | MS.gene63530:CDS | 65.0% | |
| GAGCCTTCAGGCTGTCCAGG+AGG | + | chr3.3:4991962-4991981 | MS.gene63530:CDS | 65.0% | |
| GTGCCTCCTGGACAGCCTGA+AGG | - | chr3.3:4991968-4991987 | None:intergenic | 65.0% | |
| TCTGCCAAACCTGGAGGCGG+TGG | + | chr3.3:4991615-4991634 | MS.gene63530:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 4991003 | 4994652 | 4991003 | ID=MS.gene63530 |
| chr3.3 | mRNA | 4991003 | 4994652 | 4991003 | ID=MS.gene63530.t1;Parent=MS.gene63530 |
| chr3.3 | exon | 4991003 | 4991996 | 4991003 | ID=MS.gene63530.t1.exon1;Parent=MS.gene63530.t1 |
| chr3.3 | CDS | 4991003 | 4991996 | 4991003 | ID=cds.MS.gene63530.t1;Parent=MS.gene63530.t1 |
| chr3.3 | exon | 4993919 | 4994541 | 4993919 | ID=MS.gene63530.t1.exon2;Parent=MS.gene63530.t1 |
| chr3.3 | CDS | 4993919 | 4994541 | 4993919 | ID=cds.MS.gene63530.t1;Parent=MS.gene63530.t1 |
| chr3.3 | exon | 4994617 | 4994652 | 4994617 | ID=MS.gene63530.t1.exon3;Parent=MS.gene63530.t1 |
| chr3.3 | CDS | 4994617 | 4994652 | 4994617 | ID=cds.MS.gene63530.t1;Parent=MS.gene63530.t1 |
| Gene Sequence |
| Protein sequence |
