AlfalfaGEDB | MS.gene35808

M. sativa cultivar XinJiangDaYe / MS.gene35808

KEGG: K05387
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35808.t1	KEH39010.1	100	64	0	0	1	64	1	64	9.30E-26	125.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35808.t1	A0A072VLI4	100.0	64	0	0	1	64	1	64	6.7e-26	125.6

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene35808	0.837514	4.97E-57	-1.69E-46
MS.gene049159	MS.gene35808	0.859627	3.63E-63	-1.69E-46
MS.gene049368	MS.gene35808	0.811177	7.97E-51	-1.69E-46
MS.gene049435	MS.gene35808	0.823016	1.74E-53	-1.69E-46
MS.gene049585	MS.gene35808	0.820011	8.59E-53	-1.69E-46
MS.gene049647	MS.gene35808	0.828368	9.35E-55	-1.69E-46
MS.gene049801	MS.gene35808	0.804981	1.66E-49	-1.69E-46
MS.gene049983	MS.gene35808	0.811102	8.28E-51	-1.69E-46
MS.gene050105	MS.gene35808	0.822783	1.97E-53	-1.69E-46
MS.gene050361	MS.gene35808	0.836848	7.36E-57	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene35808.t1	MTR_2g088450	100.000	64	1	64	1	64	1.74e-36	128
MS.gene35808.t1	MTR_2g088450	100.000	64	1	64	1	64	1.79e-36	128
MS.gene35808.t1	MTR_2g088450	100.000	64	1	64	1	64	2.48e-36	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 10 sgRNAs with CRISPR-Local

Find 15 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGAAGTTGTGGCTATAAT+TGG	0.217187	2.4:-12587780	MS.gene35808:CDS
AATGGAGGTGTTAGGAGTAA+AGG	0.453081	2.4:-12587838	MS.gene35808:CDS
ACAAATTGCAGTGGATTTAT+TGG	0.178126	2.4:-12587588	MS.gene35808:intron
AGACCAACTGTTGTGAAAAT+TGG	0.195940	2.4:-12587738	MS.gene35808:CDS
ATGGAGGTGTTAGGAGTAAA+GGG	0.377419	2.4:-12587837	MS.gene35808:CDS
ATTATAGCCACAACTTCATT+TGG	0.318223	2.4:+12587783	None:intergenic
ATTGGAAGATCAGCTCAACA+AGG	0.681994	2.4:-12587690	MS.gene35808:CDS
GGATTTATTGGAACAGTTGA+AGG	0.435584	2.4:-12587576	None:intergenic
GTGGATTCCAAATGAAGTTG+TGG	0.579560	2.4:-12587790	MS.gene35808:CDS
TTTACTGTTGATTCTGTGAT+TGG	0.383641	2.4:-12587708	MS.gene35808:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	AATGAAGTTGTGGCTATAAT+TGG	-	chr2.4:12587636-12587655	MS.gene35808:intron	30.0%
	ATTATAGCCACAACTTCATT+TGG	+	chr2.4:12587636-12587655	None:intergenic	30.0%
	TTTCATGATACAAATTGCAG+TGG	-	chr2.4:12587819-12587838	MS.gene35808:CDS	30.0%
	AGACCAACTGTTGTGAAAAT+TGG	-	chr2.4:12587678-12587697	MS.gene35808:CDS	35.0%
	GCTAATAAGACTATTCTTCC+TGG	-	chr2.4:12587777-12587796	MS.gene35808:CDS	35.0%
	TCCACAAACAGAAAAACAAG+AGG	+	chr2.4:12587611-12587630	None:intergenic	35.0%
	ATTGGAAGATCAGCTCAACA+AGG	-	chr2.4:12587726-12587745	MS.gene35808:CDS	40.0%
	GTGGATTCCAAATGAAGTTG+TGG	-	chr2.4:12587626-12587645	MS.gene35808:intron	40.0%
!	TATTCTTCCTGGTATTAAAA+TGG	-	chr2.4:12587788-12587807	MS.gene35808:CDS	25.0%
!	ACAAATTGCAGTGGATTTAT+TGG	-	chr2.4:12587828-12587847	MS.gene35808:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	12587579	12587859	12587579	ID=MS.gene35808
chr2.4	mRNA	12587579	12587859	12587579	ID=MS.gene35808.t1;Parent=MS.gene35808
chr2.4	exon	12587668	12587859	12587668	ID=MS.gene35808.t1.exon1;Parent=MS.gene35808.t1
chr2.4	CDS	12587668	12587859	12587668	ID=cds.MS.gene35808.t1;Parent=MS.gene35808.t1
chr2.4	exon	12587579	12587599	12587579	ID=MS.gene35808.t1.exon2;Parent=MS.gene35808.t1
chr2.4	CDS	12587579	12587599	12587579	ID=cds.MS.gene35808.t1;Parent=MS.gene35808.t1

Gene Sequence	>MS.gene35808 ATGGAGGTGTTAGGAGTAAAGGGTTTTGTCCTCTTGTTTTTCTGTTTGTGGATTCCAAATGAAGTTGTGGCTATAATTGGAAACTCTACTGTTTCTTCTAGACCAACTGTTGTGAAAATTGGAGCACTGTTTACTGTTGATTCTGTGATTGGAAGATCAGCTCAACAAGGAATCAAAACTGCAATTGATGATGTTAATGCTAATAAGACTATTCTTCCTGGTATTAAAATGGATGTTATTTTTCATGATACAAATTGCAGTGGATTTATTGGAACAGTTGA
Protein sequence	>MS.gene35808.t1 MEVLGVKGFVLLFFCLWIPNEVVAIIGNSTVSSRPTVVKIGALFTVDSVIGRSAQQGIKTAIDDWIYWNS