Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22814.t1 | XP_003626547.1 | 98.9 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 1.20E-95 | 359 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22814.t1 | Q8LGI8 | 92.5 | 174 | 13 | 0 | 1 | 174 | 1 | 174 | 6.5e-93 | 341.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22814.t1 | G7L415 | 98.9 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 9.0e-96 | 359.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene22814.t1 | TR | GNAT |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene22814 | -0.82348 | 1.35E-53 | -1.69E-46 |
| MS.gene049435 | MS.gene22814 | -0.860324 | 2.24E-63 | -1.69E-46 |
| MS.gene049850 | MS.gene22814 | -0.825783 | 3.88E-54 | -1.69E-46 |
| MS.gene050226 | MS.gene22814 | -0.816273 | 6.02E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene22814 | -0.806896 | 6.58E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene22814 | -0.811904 | 5.54E-51 | -1.69E-46 |
| MS.gene050442 | MS.gene22814 | -0.839206 | 1.82E-57 | -1.69E-46 |
| MS.gene050623 | MS.gene22814 | 0.800793 | 1.22E-48 | -1.69E-46 |
| MS.gene050680 | MS.gene22814 | -0.815892 | 7.32E-52 | -1.69E-46 |
| MS.gene050750 | MS.gene22814 | -0.810039 | 1.41E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene22814 | -0.808182 | 3.51E-50 | -1.69E-46 |
| MS.gene050826 | MS.gene22814 | -0.801257 | 9.81E-49 | -1.69E-46 |
| MS.gene050953 | MS.gene22814 | -0.822372 | 2.45E-53 | -1.69E-46 |
| MS.gene051066 | MS.gene22814 | -0.806 | 1.02E-49 | -1.69E-46 |
| MS.gene051147 | MS.gene22814 | -0.806977 | 6.33E-50 | -1.69E-46 |
| MS.gene051198 | MS.gene22814 | -0.85337 | 2.50E-61 | -1.69E-46 |
| MS.gene051210 | MS.gene22814 | -0.844605 | 6.82E-59 | -1.69E-46 |
| MS.gene051800 | MS.gene22814 | -0.840115 | 1.06E-57 | -1.69E-46 |
| MS.gene052056 | MS.gene22814 | 0.857698 | 1.37E-62 | -1.69E-46 |
| MS.gene052333 | MS.gene22814 | -0.828354 | 9.42E-55 | -1.69E-46 |
| MS.gene052519 | MS.gene22814 | -0.801618 | 8.27E-49 | -1.69E-46 |
| MS.gene052582 | MS.gene22814 | -0.809399 | 1.93E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene22814 | -0.807007 | 6.24E-50 | -1.69E-46 |
| MS.gene052586 | MS.gene22814 | -0.810554 | 1.09E-50 | -1.69E-46 |
| MS.gene052673 | MS.gene22814 | 0.800803 | 1.21E-48 | -1.69E-46 |
| MS.gene052677 | MS.gene22814 | -0.804741 | 1.87E-49 | -1.69E-46 |
| MS.gene052863 | MS.gene22814 | -0.822099 | 2.84E-53 | -1.69E-46 |
| MS.gene052896 | MS.gene22814 | -0.806831 | 6.80E-50 | -1.69E-46 |
| MS.gene053008 | MS.gene22814 | -0.800943 | 1.14E-48 | -1.69E-46 |
| MS.gene05308 | MS.gene22814 | -0.803998 | 2.67E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene22814 | -0.823176 | 1.60E-53 | -1.69E-46 |
| MS.gene053565 | MS.gene22814 | -0.814132 | 1.80E-51 | -1.69E-46 |
| MS.gene05414 | MS.gene22814 | -0.829852 | 4.08E-55 | -1.69E-46 |
| MS.gene05415 | MS.gene22814 | -0.848602 | 5.52E-60 | -1.69E-46 |
| MS.gene054236 | MS.gene22814 | -0.817754 | 2.80E-52 | -1.69E-46 |
| MS.gene054291 | MS.gene22814 | 0.833716 | 4.54E-56 | -1.69E-46 |
| MS.gene054379 | MS.gene22814 | -0.806602 | 7.60E-50 | -1.69E-46 |
| MS.gene054405 | MS.gene22814 | -0.813403 | 2.61E-51 | -1.69E-46 |
| MS.gene054467 | MS.gene22814 | -0.806344 | 8.61E-50 | -1.69E-46 |
| MS.gene054468 | MS.gene22814 | -0.816919 | 4.31E-52 | -1.69E-46 |
| MS.gene054472 | MS.gene22814 | -0.804947 | 1.69E-49 | -1.69E-46 |
| MS.gene054479 | MS.gene22814 | -0.800817 | 1.21E-48 | -1.69E-46 |
| MS.gene054559 | MS.gene22814 | -0.809378 | 1.95E-50 | -1.69E-46 |
| MS.gene054657 | MS.gene22814 | -0.802335 | 5.89E-49 | -1.69E-46 |
| MS.gene054775 | MS.gene22814 | -0.81393 | 1.99E-51 | -1.69E-46 |
| MS.gene05510 | MS.gene22814 | -0.83334 | 5.64E-56 | -1.69E-46 |
| MS.gene055227 | MS.gene22814 | -0.805545 | 1.27E-49 | -1.69E-46 |
| MS.gene055608 | MS.gene22814 | -0.81165 | 6.30E-51 | -1.69E-46 |
| MS.gene055701 | MS.gene22814 | -0.835451 | 1.67E-56 | -1.69E-46 |
| MS.gene055818 | MS.gene22814 | -0.835793 | 1.36E-56 | -1.69E-46 |
| MS.gene055926 | MS.gene22814 | -0.842959 | 1.88E-58 | -1.69E-46 |
| MS.gene05604 | MS.gene22814 | -0.806578 | 7.69E-50 | -1.69E-46 |
| MS.gene056162 | MS.gene22814 | -0.816987 | 4.17E-52 | -1.69E-46 |
| MS.gene056174 | MS.gene22814 | -0.820264 | 7.52E-53 | -1.69E-46 |
| MS.gene056776 | MS.gene22814 | -0.80936 | 1.97E-50 | -1.69E-46 |
| MS.gene056779 | MS.gene22814 | -0.801585 | 8.40E-49 | -1.69E-46 |
| MS.gene056873 | MS.gene22814 | -0.835134 | 2.00E-56 | -1.69E-46 |
| MS.gene057156 | MS.gene22814 | 0.813199 | 2.89E-51 | -1.69E-46 |
| MS.gene057314 | MS.gene22814 | -0.806769 | 7.00E-50 | -1.69E-46 |
| MS.gene05761 | MS.gene22814 | -0.801248 | 9.85E-49 | -1.69E-46 |
| MS.gene057869 | MS.gene22814 | -0.831471 | 1.64E-55 | -1.69E-46 |
| MS.gene057915 | MS.gene22814 | -0.839813 | 1.27E-57 | -1.69E-46 |
| MS.gene058146 | MS.gene22814 | -0.820231 | 7.65E-53 | -1.69E-46 |
| MS.gene058223 | MS.gene22814 | 0.816832 | 4.51E-52 | -1.69E-46 |
| MS.gene05847 | MS.gene22814 | -0.802854 | 4.60E-49 | -1.69E-46 |
| MS.gene058979 | MS.gene22814 | -0.820337 | 7.23E-53 | -1.69E-46 |
| MS.gene059161 | MS.gene22814 | -0.842671 | 2.24E-58 | -1.69E-46 |
| MS.gene059283 | MS.gene22814 | -0.805241 | 1.47E-49 | -1.69E-46 |
| MS.gene059561 | MS.gene22814 | -0.801262 | 9.78E-49 | -1.69E-46 |
| MS.gene059725 | MS.gene22814 | -0.803302 | 3.72E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene22814 | -0.804735 | 1.87E-49 | -1.69E-46 |
| MS.gene059842 | MS.gene22814 | -0.824573 | 7.50E-54 | -1.69E-46 |
| MS.gene060011 | MS.gene22814 | -0.834329 | 3.19E-56 | -1.69E-46 |
| MS.gene060137 | MS.gene22814 | 0.829456 | 5.10E-55 | -1.69E-46 |
| MS.gene060322 | MS.gene22814 | -0.815493 | 8.99E-52 | -1.69E-46 |
| MS.gene06052 | MS.gene22814 | -0.841949 | 3.48E-58 | -1.69E-46 |
| MS.gene060634 | MS.gene22814 | 0.860623 | 1.81E-63 | -1.69E-46 |
| MS.gene060683 | MS.gene22814 | -0.802932 | 4.44E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene22814 | -0.801322 | 9.51E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene22814 | -0.846298 | 2.37E-59 | -1.69E-46 |
| MS.gene060803 | MS.gene22814 | -0.845884 | 3.07E-59 | -1.69E-46 |
| MS.gene060918 | MS.gene22814 | -0.807386 | 5.18E-50 | -1.69E-46 |
| MS.gene060998 | MS.gene22814 | -0.841882 | 3.63E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51967 | MS.gene22814 | PPI |
| MS.gene51964 | MS.gene22814 | PPI |
| MS.gene92650 | MS.gene22814 | PPI |
| MS.gene22814 | MS.gene019081 | PPI |
| MS.gene63427 | MS.gene22814 | PPI |
| MS.gene51687 | MS.gene22814 | PPI |
| MS.gene009509 | MS.gene22814 | PPI |
| MS.gene95934 | MS.gene22814 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22814.t1 | MTR_7g117040 | 98.851 | 174 | 2 | 0 | 1 | 174 | 1 | 174 | 3.23e-131 | 364 |
| MS.gene22814.t1 | MTR_7g117040 | 96.552 | 174 | 2 | 1 | 1 | 174 | 1 | 170 | 1.18e-125 | 350 |
| MS.gene22814.t1 | MTR_7g117040 | 94.253 | 174 | 3 | 1 | 1 | 174 | 1 | 167 | 4.40e-122 | 341 |
| MS.gene22814.t1 | MTR_3g034200 | 35.762 | 151 | 96 | 1 | 1 | 150 | 1 | 151 | 3.41e-28 | 103 |
| MS.gene22814.t1 | MTR_3g030055 | 27.679 | 112 | 76 | 2 | 39 | 150 | 42 | 148 | 3.84e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene22814.t1 | AT1G03150 | 92.529 | 174 | 13 | 0 | 1 | 174 | 1 | 174 | 1.68e-124 | 347 |
| MS.gene22814.t1 | AT5G13780 | 36.424 | 151 | 95 | 1 | 1 | 150 | 1 | 151 | 1.24e-27 | 102 |
Find 44 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAGATTCATTAGTTTCT+TGG | 0.211108 | 7.4:-1337182 | None:intergenic |
| CGAGTGCTACGCTATTATTC+TGG | 0.267608 | 7.4:+1339049 | MS.gene22814:CDS |
| TGATATGGTTACCGGGGCCT+TGG | 0.305955 | 7.4:-1336981 | None:intergenic |
| CACAAATAGATCAACAAAAT+AGG | 0.329063 | 7.4:-1337313 | None:intergenic |
| ACTTACTGTAACCCATGATA+TGG | 0.371450 | 7.4:-1336996 | None:intergenic |
| TAATTGTTGCCTGCGATACT+CGG | 0.380713 | 7.4:-1337158 | None:intergenic |
| GTAACCCATGATATGGTTAC+CGG | 0.405860 | 7.4:-1336989 | None:intergenic |
| TTCTGGGGAAGAAGATGGAT+TGG | 0.420903 | 7.4:+1339066 | MS.gene22814:CDS |
| GATATGGTTACCGGGGCCTT+GGG | 0.427052 | 7.4:-1336980 | None:intergenic |
| GGTTACCGGGGCCTTGGGCG+AGG | 0.434572 | 7.4:-1336975 | None:intergenic |
| TAGTCGTACTCTAACTCATC+AGG | 0.466585 | 7.4:-1339257 | None:intergenic |
| GAGTGCTACGCTATTATTCT+GGG | 0.472245 | 7.4:+1339050 | MS.gene22814:CDS |
| TTGGGCGAGGTGGAAATAGT+CGG | 0.473599 | 7.4:-1336962 | None:intergenic |
| TCTGGGGAAGAAGATGGATT+GGG | 0.475034 | 7.4:+1339067 | MS.gene22814:CDS |
| GTAGTTATGGGTAAAGTTGA+GGG | 0.481119 | 7.4:+1337088 | MS.gene22814:intron |
| AGGCCCCGGTAACCATATCA+TGG | 0.483412 | 7.4:+1336984 | MS.gene22814:CDS |
| TTCCACCTCGCCCAAGGCCC+CGG | 0.488885 | 7.4:+1336970 | MS.gene22814:CDS |
| TATTATTCTGGGGAAGAAGA+TGG | 0.493124 | 7.4:+1339061 | MS.gene22814:CDS |
| GACTATTTCCACCTCGCCCA+AGG | 0.493150 | 7.4:+1336964 | MS.gene22814:CDS |
| GGAGTGACAGGTCGTTTAAG+AGG | 0.494138 | 7.4:-1339236 | None:intergenic |
| TTGAGGGGCAAGGAGAATCT+TGG | 0.494281 | 7.4:+1337104 | MS.gene22814:CDS |
| TGCTAGGTAGGTCATGTAGA+AGG | 0.496038 | 7.4:-1336932 | None:intergenic |
| TGACATTTGTAAAACGAAGA+AGG | 0.498914 | 7.4:-1336804 | None:intergenic |
| TGGGCGAGGTGGAAATAGTC+GGG | 0.499600 | 7.4:-1336961 | None:intergenic |
| TGTAGTTATGGGTAAAGTTG+AGG | 0.505774 | 7.4:+1337087 | MS.gene22814:intron |
| AGCCATCAAGATGTATGAAA+AGG | 0.514376 | 7.4:+1337353 | MS.gene22814:CDS |
| TACCGGGGCCTTGGGCGAGG+TGG | 0.518879 | 7.4:-1336972 | None:intergenic |
| CTGTTGCTCCCGAGTATCGC+AGG | 0.521448 | 7.4:+1337149 | MS.gene22814:CDS |
| TACATACAGTTTCAGTGAGA+TGG | 0.523499 | 7.4:-1336834 | None:intergenic |
| AATAGTCGGGCCATCGTGCT+AGG | 0.528873 | 7.4:-1336948 | None:intergenic |
| ATGGGTAAAGTTGAGGGGCA+AGG | 0.534565 | 7.4:+1337094 | MS.gene22814:CDS |
| AATTGTTGCCTGCGATACTC+GGG | 0.536449 | 7.4:-1337157 | None:intergenic |
| TCTAACTCATCAGGAGTGAC+AGG | 0.539202 | 7.4:-1339248 | None:intergenic |
| TAACCCATGATATGGTTACC+GGG | 0.568371 | 7.4:-1336988 | None:intergenic |
| GAGTGACAGGTCGTTTAAGA+GGG | 0.595531 | 7.4:-1339235 | None:intergenic |
| GGCCCCGGTAACCATATCAT+GGG | 0.604498 | 7.4:+1336985 | MS.gene22814:CDS |
| AGGTCGTTTAAGAGGGATGA+CGG | 0.617126 | 7.4:-1339228 | None:intergenic |
| TAGTTATGGGTAAAGTTGAG+GGG | 0.650869 | 7.4:+1337089 | MS.gene22814:intron |
| GGGCAAGGAGAATCTTGGCA+TGG | 0.658826 | 7.4:+1337109 | MS.gene22814:CDS |
| GTCGGGCCATCGTGCTAGGT+AGG | 0.658913 | 7.4:-1336944 | None:intergenic |
| TGAAGATGACAACAATACGT+AGG | 0.673340 | 7.4:+1336767 | None:intergenic |
| AACCCATGATATGGTTACCG+GGG | 0.702997 | 7.4:-1336987 | None:intergenic |
| AGTGCTACGCTATTATTCTG+GGG | 0.705031 | 7.4:+1339051 | MS.gene22814:CDS |
| ACATGACCTACCTAGCACGA+TGG | 0.757874 | 7.4:+1336938 | MS.gene22814:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAACTTTATAAGTTAAAA+CGG | - | chr7.4:1338617-1338636 | None:intergenic | 15.0% |
| !! | TTAACTTATAAAGTTGTAAT+TGG | + | chr7.4:1338619-1338638 | MS.gene22814:intron | 15.0% |
| !!! | CATTTTTAATCTTTTAGAAT+TGG | + | chr7.4:1337248-1337267 | MS.gene22814:intron | 15.0% |
| !! | AAATCAAACCTATGTTTAAT+AGG | - | chr7.4:1338475-1338494 | None:intergenic | 20.0% |
| !! | AGCTAAAAAGTGAAATAAAT+TGG | - | chr7.4:1337875-1337894 | None:intergenic | 20.0% |
| !! | ATGAAGTAAAAACAAAAACA+TGG | - | chr7.4:1339100-1339119 | None:intergenic | 20.0% |
| !! | CATTAATGTAATGTAGTTAT+GGG | + | chr7.4:1337076-1337095 | MS.gene22814:intron | 20.0% |
| !! | GCTAAAAAGTGAAATAAATT+GGG | - | chr7.4:1337874-1337893 | None:intergenic | 20.0% |
| !! | GTCTTGATATAAGTTATAAT+TGG | + | chr7.4:1337273-1337292 | MS.gene22814:intron | 20.0% |
| !! | TCATTAATGTAATGTAGTTA+TGG | + | chr7.4:1337075-1337094 | MS.gene22814:intron | 20.0% |
| !! | TTCTCATATCTGAAAATAAA+GGG | - | chr7.4:1339178-1339197 | None:intergenic | 20.0% |
| !! | TTTCTCATATCTGAAAATAA+AGG | - | chr7.4:1339179-1339198 | None:intergenic | 20.0% |
| !!! | AAAACAAAATTTTCAGATTG+TGG | + | chr7.4:1338716-1338735 | MS.gene22814:intron | 20.0% |
| !!! | TATGTTTTCTTCATTAGATT+AGG | + | chr7.4:1338947-1338966 | MS.gene22814:intron | 20.0% |
| !!! | TTTATTTTCAGATATGAGAA+AGG | + | chr7.4:1339178-1339197 | MS.gene22814:intron | 20.0% |
| !!! | TTTCATATTCAGATTTTGTT+AGG | - | chr7.4:1338376-1338395 | None:intergenic | 20.0% |
| !!! | TTTTAATCTTTTAGAATTGG+AGG | + | chr7.4:1337251-1337270 | MS.gene22814:intron | 20.0% |
| ! | AAAGAATTAGTTAGCAATTC+AGG | - | chr7.4:1338990-1339009 | None:intergenic | 25.0% |
| ! | AAATGAAAGAAAGATATGCA+AGG | - | chr7.4:1337233-1337252 | None:intergenic | 25.0% |
| ! | ACATGTTGAAAAATCATAAG+TGG | + | chr7.4:1337685-1337704 | MS.gene22814:intron | 25.0% |
| ! | ACTTTACAAATAGCATCAAA+TGG | + | chr7.4:1338422-1338441 | MS.gene22814:intron | 25.0% |
| ! | AGAAACATAATATGGAAAAG+AGG | - | chr7.4:1338123-1338142 | None:intergenic | 25.0% |
| ! | ATATAATCGAGAGAGAAAAA+AGG | - | chr7.4:1337036-1337055 | None:intergenic | 25.0% |
| ! | CACAAATAGATCAACAAAAT+AGG | - | chr7.4:1337316-1337335 | None:intergenic | 25.0% |
| ! | CAGTACATAGAAACATAATA+TGG | - | chr7.4:1338131-1338150 | None:intergenic | 25.0% |
| ! | GAAACATAATATGGAAAAGA+GGG | - | chr7.4:1338122-1338141 | None:intergenic | 25.0% |
| ! | GTTGTATAATGTACACAAAA+TGG | - | chr7.4:1337910-1337929 | None:intergenic | 25.0% |
| ! | TATAATCGAGAGAGAAAAAA+GGG | - | chr7.4:1337035-1337054 | None:intergenic | 25.0% |
| ! | TATTATTATCCAACTGATGT+GGG | - | chr7.4:1338766-1338785 | None:intergenic | 25.0% |
| ! | TGTAAATTGAATGTTGGATT+AGG | + | chr7.4:1338923-1338942 | MS.gene22814:intron | 25.0% |
| ! | TGTCATTGTAAATTGAATGT+TGG | + | chr7.4:1338917-1338936 | MS.gene22814:intron | 25.0% |
| ! | TTGAAAATAGAGTTCTTTCA+TGG | - | chr7.4:1337654-1337673 | None:intergenic | 25.0% |
| !! | AAATATTGTCTCAATGGATT+GGG | + | chr7.4:1338568-1338587 | MS.gene22814:intron | 25.0% |
| !! | ATTTTCAGATTGTGGTTTTT+TGG | + | chr7.4:1338724-1338743 | MS.gene22814:intron | 25.0% |
| !! | TAATGAGAAGTTAGATTTTG+TGG | - | chr7.4:1337725-1337744 | None:intergenic | 25.0% |
| !! | TATAAAGTTGTAATTGGTTC+AGG | + | chr7.4:1338625-1338644 | MS.gene22814:intron | 25.0% |
| !!! | ATTGTAAAAGCACTAATAAG+AGG | - | chr7.4:1338069-1338088 | None:intergenic | 25.0% |
| !!! | TTGTAAAAGCACTAATAAGA+GGG | - | chr7.4:1338068-1338087 | None:intergenic | 25.0% |
| AAAATAGAGTTCTTTCATGG+TGG | - | chr7.4:1337651-1337670 | None:intergenic | 30.0% | |
| ACAAACAACATTAAGAACGA+AGG | - | chr7.4:1336897-1336916 | None:intergenic | 30.0% | |
| ACATACAGAATCATCAAGTA+GGG | + | chr7.4:1337429-1337448 | MS.gene22814:intron | 30.0% | |
| ATAATCGAGAGAGAAAAAAG+GGG | - | chr7.4:1337034-1337053 | None:intergenic | 30.0% | |
| ATGCCTTCTGTTTAAAAACT+TGG | + | chr7.4:1337835-1337854 | MS.gene22814:intron | 30.0% | |
| CACTTAATGACTTTCTCAAT+GGG | - | chr7.4:1337962-1337981 | None:intergenic | 30.0% | |
| GAAATATTGTCTCAATGGAT+TGG | + | chr7.4:1338567-1338586 | MS.gene22814:intron | 30.0% | |
| GAGATGAAATATTGTCTCAA+TGG | + | chr7.4:1338562-1338581 | MS.gene22814:intron | 30.0% | |
| GTATTATTATCCAACTGATG+TGG | - | chr7.4:1338767-1338786 | None:intergenic | 30.0% | |
| TAAGAATTAGCATGAAGATG+AGG | - | chr7.4:1337460-1337479 | None:intergenic | 30.0% | |
| TACCAGTTAGAGAAGAAAAA+AGG | + | chr7.4:1337495-1337514 | MS.gene22814:intron | 30.0% | |
| TGACATTTGTAAAACGAAGA+AGG | - | chr7.4:1336807-1336826 | None:intergenic | 30.0% | |
| TGCCTTCTGTTTAAAAACTT+GGG | + | chr7.4:1337836-1337855 | MS.gene22814:intron | 30.0% | |
| TGTTATCTAAAAAACACCGT+AGG | - | chr7.4:1338008-1338027 | None:intergenic | 30.0% | |
| TTCTGTTTAAAAACTTGGGT+AGG | + | chr7.4:1337840-1337859 | MS.gene22814:intron | 30.0% | |
| ! | AAGTCTGTGTCACTATTTAT+TGG | + | chr7.4:1339140-1339159 | MS.gene22814:intron | 30.0% |
| ! | GAGAAGATTCATTAGTTTCT+TGG | - | chr7.4:1337185-1337204 | None:intergenic | 30.0% |
| ! | GCTTTGAACCTATTAAACAT+AGG | + | chr7.4:1338464-1338483 | MS.gene22814:intron | 30.0% |
| ! | TACCCAAGTTTTTAAACAGA+AGG | - | chr7.4:1337841-1337860 | None:intergenic | 30.0% |
| ! | TACCTTTTCATACATCTTGA+TGG | - | chr7.4:1337358-1337377 | None:intergenic | 30.0% |
| ! | TGAGATATGAATGAAAGCAT+TGG | - | chr7.4:1338167-1338186 | None:intergenic | 30.0% |
| ! | TGCTATTTAAGCTTACTTTC+TGG | + | chr7.4:1338231-1338250 | MS.gene22814:intron | 30.0% |
| !! | AATACCATTGAGTTGAGAAA+CGG | - | chr7.4:1336864-1336883 | None:intergenic | 30.0% |
| !! | AGATATGAATGAAAGCATTG+GGG | - | chr7.4:1338165-1338184 | None:intergenic | 30.0% |
| !! | CATTCTCTACTTTTCATTTC+AGG | + | chr7.4:1337380-1337399 | MS.gene22814:intron | 30.0% |
| !! | GAGATATGAATGAAAGCATT+GGG | - | chr7.4:1338166-1338185 | None:intergenic | 30.0% |
| !! | GATTTTTCAACATGTTAGCT+TGG | - | chr7.4:1337680-1337699 | None:intergenic | 30.0% |
| !!! | ACTTTTTAGCTTATTTCTGC+TGG | + | chr7.4:1337884-1337903 | MS.gene22814:intron | 30.0% |
| !!! | TACCTTTTTTCTTCTCTAAC+TGG | - | chr7.4:1337500-1337519 | None:intergenic | 30.0% |
| ACTTACTGTAACCCATGATA+TGG | - | chr7.4:1336999-1337018 | None:intergenic | 35.0% | |
| AGCACTAATAAGAGGGTAAA+AGG | - | chr7.4:1338061-1338080 | None:intergenic | 35.0% | |
| AGCCATCAAGATGTATGAAA+AGG | + | chr7.4:1337353-1337372 | MS.gene22814:CDS | 35.0% | |
| ATACAGAATCATCAAGTAGG+GGG | + | chr7.4:1337431-1337450 | MS.gene22814:intron | 35.0% | |
| ATGACTTTCTCAATGGGATA+AGG | - | chr7.4:1337956-1337975 | None:intergenic | 35.0% | |
| CATACAGAATCATCAAGTAG+GGG | + | chr7.4:1337430-1337449 | MS.gene22814:intron | 35.0% | |
| GACATACAGAATCATCAAGT+AGG | + | chr7.4:1337428-1337447 | MS.gene22814:intron | 35.0% | |
| GCACTTAATGACTTTCTCAA+TGG | - | chr7.4:1337963-1337982 | None:intergenic | 35.0% | |
| GTAGTTATGGGTAAAGTTGA+GGG | + | chr7.4:1337088-1337107 | MS.gene22814:intron | 35.0% | |
| TAATCGAGAGAGAAAAAAGG+GGG | - | chr7.4:1337033-1337052 | None:intergenic | 35.0% | |
| TACATACAGTTTCAGTGAGA+TGG | - | chr7.4:1336837-1336856 | None:intergenic | 35.0% | |
| TAGTTATGGGTAAAGTTGAG+GGG | + | chr7.4:1337089-1337108 | MS.gene22814:intron | 35.0% | |
| TCCTATTTGACATCTTAGCT+TGG | + | chr7.4:1339010-1339029 | MS.gene22814:intron | 35.0% | |
| TGAGAGGAATCTCAATCAAA+CGG | + | chr7.4:1337572-1337591 | MS.gene22814:intron | 35.0% | |
| TGTAGTTATGGGTAAAGTTG+AGG | + | chr7.4:1337087-1337106 | MS.gene22814:intron | 35.0% | |
| ! | TATTATTCTGGGGAAGAAGA+TGG | + | chr7.4:1339061-1339080 | MS.gene22814:CDS | 35.0% |
| ! | TGGTCTGATTTTGCAAACAA+CGG | + | chr7.4:1338691-1338710 | MS.gene22814:intron | 35.0% |
| ! | TGTAATTGGTTCAGGTGATT+TGG | + | chr7.4:1338633-1338652 | MS.gene22814:intron | 35.0% |
| !! | CATTTCAGGTTCTGTTAGAT+AGG | + | chr7.4:1337394-1337413 | MS.gene22814:intron | 35.0% |
| !! | CTTCACTTTTCACAAGAAGT+CGG | + | chr7.4:1338512-1338531 | MS.gene22814:intron | 35.0% |
| !! | TTTTCATACATCTTGATGGC+TGG | - | chr7.4:1337354-1337373 | None:intergenic | 35.0% |
| ACTACCGTTTCTCAACTCAA+TGG | + | chr7.4:1336857-1336876 | MS.gene22814:intron | 40.0% | |
| AGTGCTACGCTATTATTCTG+GGG | + | chr7.4:1339051-1339070 | MS.gene22814:CDS | 40.0% | |
| ATAGAGTTCTTTCATGGTGG+AGG | - | chr7.4:1337648-1337667 | None:intergenic | 40.0% | |
| CGACTTCTTGTGAAAAGTGA+AGG | - | chr7.4:1338514-1338533 | None:intergenic | 40.0% | |
| CTAAAAAACACCGTAGGACA+AGG | - | chr7.4:1338002-1338021 | None:intergenic | 40.0% | |
| CTTAGTCAGATAAGGCTTGA+TGG | + | chr7.4:1338322-1338341 | MS.gene22814:intron | 40.0% | |
| GAGAGGAATCTCAATCAAAC+GGG | + | chr7.4:1337573-1337592 | MS.gene22814:intron | 40.0% | |
| GAGTGCTACGCTATTATTCT+GGG | + | chr7.4:1339050-1339069 | MS.gene22814:CDS | 40.0% | |
| GCCAAGCTAAGATGTCAAAT+AGG | - | chr7.4:1339014-1339033 | None:intergenic | 40.0% | |
| GGTTGTAGTGTTCTACTTCA+TGG | + | chr7.4:1337594-1337613 | MS.gene22814:intron | 40.0% | |
| GTAACCCATGATATGGTTAC+CGG | - | chr7.4:1336992-1337011 | None:intergenic | 40.0% | |
| GTTATCTCGATTGCATTGAG+AGG | + | chr7.4:1337556-1337575 | MS.gene22814:intron | 40.0% | |
| TAACCCATGATATGGTTACC+GGG | - | chr7.4:1336991-1337010 | None:intergenic | 40.0% | |
| TAATTGTTGCCTGCGATACT+CGG | - | chr7.4:1337161-1337180 | None:intergenic | 40.0% | |
| TAGTCGTACTCTAACTCATC+AGG | - | chr7.4:1339260-1339279 | None:intergenic | 40.0% | |
| TTACTTTGTCCCACATCAGT+TGG | + | chr7.4:1338754-1338773 | MS.gene22814:intron | 40.0% | |
| TTTCTCAATGGGATAAGGCT+TGG | - | chr7.4:1337951-1337970 | None:intergenic | 40.0% | |
| ! | AAGCCTTATCTGACTAAGTG+GGG | - | chr7.4:1338320-1338339 | None:intergenic | 40.0% |
| ! | ACAAACAAAGCCTTGTCCTA+CGG | + | chr7.4:1337989-1338008 | MS.gene22814:intron | 40.0% |
| ! | CAAGCCTTATCTGACTAAGT+GGG | - | chr7.4:1338321-1338340 | None:intergenic | 40.0% |
| ! | TAGAGTTCTTTCATGGTGGA+GGG | - | chr7.4:1337647-1337666 | None:intergenic | 40.0% |
| ! | TCAAGCCTTATCTGACTAAG+TGG | - | chr7.4:1338322-1338341 | None:intergenic | 40.0% |
| !! | AAAGCATTGGGGACATAGTT+AGG | - | chr7.4:1338154-1338173 | None:intergenic | 40.0% |
| !! | TTGCTGAGTGTTGAAACTAC+AGG | - | chr7.4:1337527-1337546 | None:intergenic | 40.0% |
| AACCCATGATATGGTTACCG+GGG | - | chr7.4:1336990-1337009 | None:intergenic | 45.0% | |
| AATTGTTGCCTGCGATACTC+GGG | - | chr7.4:1337160-1337179 | None:intergenic | 45.0% | |
| AGGTCGTTTAAGAGGGATGA+CGG | - | chr7.4:1339231-1339250 | None:intergenic | 45.0% | |
| CGAGTGCTACGCTATTATTC+TGG | + | chr7.4:1339049-1339068 | MS.gene22814:CDS | 45.0% | |
| GAGTGACAGGTCGTTTAAGA+GGG | - | chr7.4:1339238-1339257 | None:intergenic | 45.0% | |
| TCTAACTCATCAGGAGTGAC+AGG | - | chr7.4:1339251-1339270 | None:intergenic | 45.0% | |
| TGCTAGGTAGGTCATGTAGA+AGG | - | chr7.4:1336935-1336954 | None:intergenic | 45.0% | |
| ! | CGTAATCTGGAATTGCAAGC+TGG | + | chr7.4:1338666-1338685 | MS.gene22814:intron | 45.0% |
| ! | TCTGGAATTGCAAGCTGGTT+TGG | + | chr7.4:1338671-1338690 | MS.gene22814:intron | 45.0% |
| ! | TCTGGGGAAGAAGATGGATT+GGG | + | chr7.4:1339067-1339086 | MS.gene22814:CDS | 45.0% |
| ! | TGGCTAGTTCATGCGTAATC+TGG | + | chr7.4:1338653-1338672 | MS.gene22814:intron | 45.0% |
| ! | TTCTGGGGAAGAAGATGGAT+TGG | + | chr7.4:1339066-1339085 | MS.gene22814:CDS | 45.0% |
| !! | GGAAGAAGATGGATTGGGTA+TGG | + | chr7.4:1339072-1339091 | MS.gene22814:intron | 45.0% |
| !! | GTAGGACAAGGCTTTGTTTG+TGG | - | chr7.4:1337990-1338009 | None:intergenic | 45.0% |
| !! | ATAATAATACAATTAAATTA+AGG | + | chr7.4:1338777-1338796 | MS.gene22814:intron | 5.0% |
| !! | TAATAATACAATTAAATTAA+GGG | + | chr7.4:1338778-1338797 | MS.gene22814:intron | 5.0% |
| !! | TAATAATACAATTAAATTAA+GGG | - | chr7.4:1338797-1338778 | None:intergenic | 5.0% |
| !! | TAATTGTATTATTAAATTAA+GGG | + | chr7.4:1338850-1338869 | MS.gene22814:intron | 5.0% |
| !! | TTAATAATACAATTAAATTA+AGG | - | chr7.4:1338845-1338864 | None:intergenic | 5.0% |
| !! | TTAATTGTATTATTAAATTA+AGG | + | chr7.4:1338849-1338868 | MS.gene22814:intron | 5.0% |
| ACATGACCTACCTAGCACGA+TGG | + | chr7.4:1336938-1336957 | MS.gene22814:CDS | 50.0% | |
| AGAGGGCAGAGTCTCAACTT+AGG | - | chr7.4:1338105-1338124 | None:intergenic | 50.0% | |
| ATGGGTAAAGTTGAGGGGCA+AGG | + | chr7.4:1337094-1337113 | MS.gene22814:CDS | 50.0% | |
| CGACCCCACTTAGTCAGATA+AGG | + | chr7.4:1338314-1338333 | MS.gene22814:intron | 50.0% | |
| GAGGGTAACATCACAGGGAA+CGG | - | chr7.4:1337629-1337648 | None:intergenic | 50.0% | |
| GCAGCTACCATACTCCAAGA+TGG | - | chr7.4:1337781-1337800 | None:intergenic | 50.0% | |
| GCTACCATACTCCAAGATGG+TGG | - | chr7.4:1337778-1337797 | None:intergenic | 50.0% | |
| GGAGTGACAGGTCGTTTAAG+AGG | - | chr7.4:1339239-1339258 | None:intergenic | 50.0% | |
| TGGTGGAGGGTAACATCACA+GGG | - | chr7.4:1337634-1337653 | None:intergenic | 50.0% | |
| TTGAGGGGCAAGGAGAATCT+TGG | + | chr7.4:1337104-1337123 | MS.gene22814:CDS | 50.0% | |
| TTGGGCGAGGTGGAAATAGT+CGG | - | chr7.4:1336965-1336984 | None:intergenic | 50.0% | |
| ! | ACCATACTCCAAGATGGTGG+TGG | - | chr7.4:1337775-1337794 | None:intergenic | 50.0% |
| ! | ATGGTGGAGGGTAACATCAC+AGG | - | chr7.4:1337635-1337654 | None:intergenic | 50.0% |
| AATAGTCGGGCCATCGTGCT+AGG | - | chr7.4:1336951-1336970 | None:intergenic | 55.0% | |
| AGGCCCCGGTAACCATATCA+TGG | + | chr7.4:1336984-1337003 | MS.gene22814:CDS | 55.0% | |
| GACTATTTCCACCTCGCCCA+AGG | + | chr7.4:1336964-1336983 | MS.gene22814:CDS | 55.0% | |
| GAGAACTGCCACCACCATCT+TGG | + | chr7.4:1337764-1337783 | MS.gene22814:intron | 55.0% | |
| GATATGGTTACCGGGGCCTT+GGG | - | chr7.4:1336983-1337002 | None:intergenic | 55.0% | |
| GCCACCACCATCTTGGAGTA+TGG | + | chr7.4:1337771-1337790 | MS.gene22814:intron | 55.0% | |
| GGCCCCGGTAACCATATCAT+GGG | + | chr7.4:1336985-1337004 | MS.gene22814:CDS | 55.0% | |
| GGGCAAGGAGAATCTTGGCA+TGG | + | chr7.4:1337109-1337128 | MS.gene22814:CDS | 55.0% | |
| TGATATGGTTACCGGGGCCT+TGG | - | chr7.4:1336984-1337003 | None:intergenic | 55.0% | |
| TGGGCGAGGTGGAAATAGTC+GGG | - | chr7.4:1336964-1336983 | None:intergenic | 55.0% | |
| ! | CTGTTGCTCCCGAGTATCGC+AGG | + | chr7.4:1337149-1337168 | MS.gene22814:CDS | 60.0% |
| GTCGGGCCATCGTGCTAGGT+AGG | - | chr7.4:1336947-1336966 | None:intergenic | 65.0% | |
| TTCCACCTCGCCCAAGGCCC+CGG | + | chr7.4:1336970-1336989 | MS.gene22814:CDS | 70.0% | |
| GGTTACCGGGGCCTTGGGCG+AGG | - | chr7.4:1336978-1336997 | None:intergenic | 75.0% | |
| TACCGGGGCCTTGGGCGAGG+TGG | - | chr7.4:1336975-1336994 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 1336772 | 1339280 | 1336772 | ID=MS.gene22814 |
| chr7.4 | mRNA | 1336772 | 1339280 | 1336772 | ID=MS.gene22814.t1;Parent=MS.gene22814 |
| chr7.4 | exon | 1336772 | 1336849 | 1336772 | ID=MS.gene22814.t1.exon1;Parent=MS.gene22814.t1 |
| chr7.4 | CDS | 1336772 | 1336849 | 1336772 | ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1 |
| chr7.4 | exon | 1336922 | 1337012 | 1336922 | ID=MS.gene22814.t1.exon2;Parent=MS.gene22814.t1 |
| chr7.4 | CDS | 1336922 | 1337012 | 1336922 | ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1 |
| chr7.4 | exon | 1337092 | 1337224 | 1337092 | ID=MS.gene22814.t1.exon3;Parent=MS.gene22814.t1 |
| chr7.4 | CDS | 1337092 | 1337224 | 1337092 | ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1 |
| chr7.4 | exon | 1337305 | 1337374 | 1337305 | ID=MS.gene22814.t1.exon4;Parent=MS.gene22814.t1 |
| chr7.4 | CDS | 1337305 | 1337374 | 1337305 | ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1 |
| chr7.4 | exon | 1339028 | 1339088 | 1339028 | ID=MS.gene22814.t1.exon5;Parent=MS.gene22814.t1 |
| chr7.4 | CDS | 1339028 | 1339088 | 1339028 | ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1 |
| chr7.4 | exon | 1339189 | 1339280 | 1339189 | ID=MS.gene22814.t1.exon6;Parent=MS.gene22814.t1 |
| chr7.4 | CDS | 1339189 | 1339280 | 1339189 | ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1 |
| Gene Sequence |
| Protein sequence |
