AlfalfaGEDB | MS.gene22814

M. sativa cultivar XinJiangDaYe / MS.gene22814

KEGG: K17972
GO: GO:0003674 GO:0003824 GO:0008080 GO:0016407 GO:0016410 GO:0016740 GO:0016746 GO:0016747
PFAM: PF00583.28

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22814.t1	XP_003626547.1	98.9	174	2	0	1	174	1	174	1.20E-95	359

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22814.t1	Q8LGI8	92.5	174	13	0	1	174	1	174	6.5e-93	341.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22814.t1	G7L415	98.9	174	2	0	1	174	1	174	9.0e-96	359.0

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene22814.t1	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049159	MS.gene22814	-0.82348	1.35E-53	-1.69E-46
MS.gene049435	MS.gene22814	-0.860324	2.24E-63	-1.69E-46
MS.gene049850	MS.gene22814	-0.825783	3.88E-54	-1.69E-46
MS.gene050226	MS.gene22814	-0.816273	6.02E-52	-1.69E-46
MS.gene050227	MS.gene22814	-0.806896	6.58E-50	-1.69E-46
MS.gene050228	MS.gene22814	-0.811904	5.54E-51	-1.69E-46
MS.gene050442	MS.gene22814	-0.839206	1.82E-57	-1.69E-46
MS.gene050623	MS.gene22814	0.800793	1.22E-48	-1.69E-46
MS.gene050680	MS.gene22814	-0.815892	7.32E-52	-1.69E-46
MS.gene050750	MS.gene22814	-0.810039	1.41E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene009509	MS.gene22814	PPI
MS.gene22814	MS.gene019081	PPI
MS.gene51687	MS.gene22814	PPI
MS.gene51964	MS.gene22814	PPI
MS.gene51967	MS.gene22814	PPI
MS.gene63427	MS.gene22814	PPI
MS.gene92650	MS.gene22814	PPI
MS.gene95934	MS.gene22814	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22814.t1	MTR_7g117040	98.851	174	2	0	1	174	1	174	3.23e-131	364
MS.gene22814.t1	MTR_7g117040	96.552	174	2	1	1	174	1	170	1.18e-125	350
MS.gene22814.t1	MTR_7g117040	94.253	174	3	1	1	174	1	167	4.40e-122	341
MS.gene22814.t1	MTR_3g034200	35.762	151	96	1	1	150	1	151	3.41e-28	103
MS.gene22814.t1	MTR_3g030055	27.679	112	76	2	39	150	42	148	3.84e-11	58.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene22814.t1	AT1G03150	92.529	174	13	0	1	174	1	174	1.68e-124	347
MS.gene22814.t1	AT5G13780	36.424	151	95	1	1	150	1	151	1.24e-27	102

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Find 44 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACCCATGATATGGTTACCG+GGG	0.702997	7.4:-1336987	None:intergenic
AATAGTCGGGCCATCGTGCT+AGG	0.528873	7.4:-1336948	None:intergenic
AATTGTTGCCTGCGATACTC+GGG	0.536449	7.4:-1337157	None:intergenic
ACATGACCTACCTAGCACGA+TGG	0.757874	7.4:+1336938	MS.gene22814:CDS
ACTTACTGTAACCCATGATA+TGG	0.371450	7.4:-1336996	None:intergenic
AGCCATCAAGATGTATGAAA+AGG	0.514376	7.4:+1337353	MS.gene22814:CDS
AGGCCCCGGTAACCATATCA+TGG	0.483412	7.4:+1336984	MS.gene22814:CDS
AGGTCGTTTAAGAGGGATGA+CGG	0.617126	7.4:-1339228	None:intergenic
AGTGCTACGCTATTATTCTG+GGG	0.705031	7.4:+1339051	MS.gene22814:CDS
ATGGGTAAAGTTGAGGGGCA+AGG	0.534565	7.4:+1337094	MS.gene22814:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATAGAGTTCTTTCATGG+TGG	-	chr7.4:1337651-1337670	None:intergenic	30.0%
ACAAACAACATTAAGAACGA+AGG	-	chr7.4:1336897-1336916	None:intergenic	30.0%
ACATACAGAATCATCAAGTA+GGG	+	chr7.4:1337429-1337448	MS.gene22814:intron	30.0%
ATAATCGAGAGAGAAAAAAG+GGG	-	chr7.4:1337034-1337053	None:intergenic	30.0%
ATGCCTTCTGTTTAAAAACT+TGG	+	chr7.4:1337835-1337854	MS.gene22814:intron	30.0%
CACTTAATGACTTTCTCAAT+GGG	-	chr7.4:1337962-1337981	None:intergenic	30.0%
GAAATATTGTCTCAATGGAT+TGG	+	chr7.4:1338567-1338586	MS.gene22814:intron	30.0%
GAGATGAAATATTGTCTCAA+TGG	+	chr7.4:1338562-1338581	MS.gene22814:intron	30.0%
GTATTATTATCCAACTGATG+TGG	-	chr7.4:1338767-1338786	None:intergenic	30.0%
TAAGAATTAGCATGAAGATG+AGG	-	chr7.4:1337460-1337479	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	1336772	1339280	1336772	ID=MS.gene22814
chr7.4	mRNA	1336772	1339280	1336772	ID=MS.gene22814.t1;Parent=MS.gene22814
chr7.4	exon	1336772	1336849	1336772	ID=MS.gene22814.t1.exon1;Parent=MS.gene22814.t1
chr7.4	CDS	1336772	1336849	1336772	ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1
chr7.4	exon	1336922	1337012	1336922	ID=MS.gene22814.t1.exon2;Parent=MS.gene22814.t1
chr7.4	CDS	1336922	1337012	1336922	ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1
chr7.4	exon	1337092	1337224	1337092	ID=MS.gene22814.t1.exon3;Parent=MS.gene22814.t1
chr7.4	CDS	1337092	1337224	1337092	ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1
chr7.4	exon	1337305	1337374	1337305	ID=MS.gene22814.t1.exon4;Parent=MS.gene22814.t1
chr7.4	CDS	1337305	1337374	1337305	ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1
chr7.4	exon	1339028	1339088	1339028	ID=MS.gene22814.t1.exon5;Parent=MS.gene22814.t1
chr7.4	CDS	1339028	1339088	1339028	ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1
chr7.4	exon	1339189	1339280	1339189	ID=MS.gene22814.t1.exon6;Parent=MS.gene22814.t1
chr7.4	CDS	1339189	1339280	1339189	ID=cds.MS.gene22814.t1;Parent=MS.gene22814.t1

Gene Sequence

>MS.gene22814

ATGACAACAATACGTAGGTTTTGCTGCAACGACCTTCTTCGTTTTACAAATGTCAATCTTGACCATCTCACTGAAACTGTATGTAACTACCGTTTCTCAACTCAATGGTATTTCACTTTATGCCTTCGTTCTTAATGTTGTTTGTTTCAGTTTAACATGTCCTTCTACATGACCTACCTAGCACGATGGCCCGACTATTTCCACCTCGCCCAAGGCCCCGGTAACCATATCATGGGTTACAGTAAGTATTCTTTCTTTCCCCCTTTTTTCTCTCTCGATTATATCATGTCATAATCAATTATATCATTAATGTAATGTAGTTATGGGTAAAGTTGAGGGGCAAGGAGAATCTTGGCATGGTCATGTTACTGCAGTAACTGTTGCTCCCGAGTATCGCAGGCAACAATTAGCCAAGAAACTAATGAATCTTCTCGAAGACATCAGTGACAACATGTAAGCCTTGCATATCTTTCTTTCATTTTTAATCTTTTAGAATTGGAGGTCTTGATATAAGTTATAATTGGATTTTGCAGTGACAAAGCCTATTTTGTTGATCTATTTGTGAGAGCATCTAATGCACCAGCCATCAAGATGTATGAAAAGGTAATCATTCTCTACTTTTCATTTCAGGTTCTGTTAGATAGGTTTCTTAGTTAGACATACAGAATCATCAAGTAGGGGGATTCCTCATCTTCATGCTAATTCTTATTATCAATAAAACAATACCAGTTAGAGAAGAAAAAAGGTATAGACCTGTAGTTTCAACACTCAGCAAATAAGCACAGTTATCTCGATTGCATTGAGAGGAATCTCAATCAAACGGGTTGTAGTGTTCTACTTCATGGCTTCATGTGCCGTTCCCTGTGATGTTACCCTCCACCATGAAAGAACTCTATTTTCAATATCCAAGCTAACATGTTGAAAAATCATAAGTGGTTTTGCTAGAGTTTCCACAAAATCTAACTTCTCATTAGACTATGAGTGCATCAAATGAGAACTGCCACCACCATCTTGGAGTATGGTAGCTGCAGCATAGTAGAGAAGTTAAAGCAATTAATCATAGATGCCTTCTGTTTAAAAACTTGGGTAGGATATCTATCCCAATTTATTTCACTTTTTAGCTTATTTCTGCTGGCCATTTTGTGTACATTATACAACACAATACAACAACAACAACCAAGCCTTATCCCATTGAGAAAGTCATTAAGTGCATAACCACAAACAAAGCCTTGTCCTACGGTGTTTTTTAGATAACATCTATAGCTGATTATAGATAACATCGACAGCCTTTTACCCTCTTATTAGTGCTTTTACAATTTTTCTTCACACGCCTAAGTTGAGACTCTGCCCTCTTTTCCATATTATGTTTCTATGTACTGCCTAACTATGTCCCCAATGCTTTCATTCATATCTCACTTTGTCTTTTGTGTTCACTCATTCATCATAACATTCTCATCTCTGCTATTTAAGCTTACTTTCTGGCTATGTAAATATTTTAAGTAAATAAATAATCTAAATATAATATAAATTTGAATACAACTGCGACCCCACTTAGTCAGATAAGGCTTGATGGTTGACTGATGAATTTGAATACAACTGTACCTAACAAAATCTGAATATGAAATACTAATTATATAAAAAAATAAAGAAACTTTACAAATAGCATCAAATGGCACAATAGTCGTGTTTTATGCTTTGAACCTATTAAACATAGGTTTGATTTTTTTAAAAAAAATTTACCTTCACTTTTCACAAGAAGTCGGTATATAATTTGTCATAAAACGTCTATTGAGATGAAATATTGTCTCAATGGATTGGGAGTCTTGCAATCGTCAAACTTAGCCGTTTTAACTTATAAAGTTGTAATTGGTTCAGGTGATTTGGCTAGTTCATGCGTAATCTGGAATTGCAAGCTGGTTTGGTCTGATTTTGCAAACAACGGACAAAACAAAATTTTCAGATTGTGGTTTTTTGGTTCTTCATTACTTTGTCCCACATCAGTTGGATAATAATACAATTAAATTAAGGGCATGCTATTTATAATAAAATTCATAATCATAAATAGCATGCCCTTAATTTAATTGTATTATTAAATTAAGGGCATGCTATTTATGATTATGAATTTTATTATATATTAAAATATAATGTCATTGTAAATTGAATGTTGGATTAGGATATGTTTTCTTCATTAGATTAGGATTTTTTGAGTCTAAAGCCTGAATTGCTAACTAATTCTTTTCCTATTTGACATCTTAGCTTGGCTATGTGATTTATCGACGAGTGCTACGCTATTATTCTGGGGAAGAAGATGGATTGGGTATGGTTCCATGTTTTTGTTTTTACTTCATCTCTTATTCTCTTTAAACAAAAGTCTGTGTCACTATTTATTGGTTCTCATTTTTACCCTTTATTTTCAGATATGAGAAAGGCATTATCTCGTGATATTGATAAGAAGTCCGTCATCCCTCTTAAACGACCTGTCACTCCTGATGAGTTAGAGTACGACTAA

Protein sequence

>MS.gene22814.t1

MTTIRRFCCNDLLRFTNVNLDHLTETFNMSFYMTYLARWPDYFHLAQGPGNHIMGYIMGKVEGQGESWHGHVTAVTVAPEYRRQQLAKKLMNLLEDISDNIDKAYFVDLFVRASNAPAIKMYEKLGYVIYRRVLRYYSGEEDGLDMRKALSRDIDKKSVIPLKRPVTPDELEYD