Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45115.t1 | RHN55134.1 | 95.3 | 386 | 18 | 0 | 1 | 386 | 31 | 416 | 2.40E-216 | 761.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45115.t1 | G7K475 | 95.3 | 386 | 18 | 0 | 1 | 386 | 1 | 386 | 1.7e-216 | 761.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049413 | MS.gene45115 | 0.818399 | 2.00E-52 | -1.69E-46 |
| MS.gene050961 | MS.gene45115 | 0.822579 | 2.20E-53 | -1.69E-46 |
| MS.gene051959 | MS.gene45115 | 0.827236 | 1.75E-54 | -1.69E-46 |
| MS.gene051960 | MS.gene45115 | 0.828703 | 7.76E-55 | -1.69E-46 |
| MS.gene052040 | MS.gene45115 | 0.818729 | 1.68E-52 | -1.69E-46 |
| MS.gene052053 | MS.gene45115 | 0.845354 | 4.28E-59 | -1.69E-46 |
| MS.gene052537 | MS.gene45115 | 0.801282 | 9.69E-49 | -1.69E-46 |
| MS.gene052570 | MS.gene45115 | 0.831213 | 1.90E-55 | -1.69E-46 |
| MS.gene053602 | MS.gene45115 | 0.80233 | 5.90E-49 | -1.69E-46 |
| MS.gene05624 | MS.gene45115 | 0.800853 | 1.19E-48 | -1.69E-46 |
| MS.gene057001 | MS.gene45115 | 0.805819 | 1.11E-49 | -1.69E-46 |
| MS.gene059698 | MS.gene45115 | 0.816855 | 4.46E-52 | -1.69E-46 |
| MS.gene06023 | MS.gene45115 | 0.810444 | 1.15E-50 | -1.69E-46 |
| MS.gene060522 | MS.gene45115 | 0.820183 | 7.85E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene45115 | MS.gene45116 | PPI |
| MS.gene45115 | MS.gene027537 | PPI |
| MS.gene45115 | MS.gene027534 | PPI |
| MS.gene45115 | MS.gene042700 | PPI |
| MS.gene45115 | MS.gene68298 | PPI |
| MS.gene027544 | MS.gene45115 | PPI |
| MS.gene45115 | MS.gene027535 | PPI |
| MS.gene45115 | MS.gene45117 | PPI |
| MS.gene45115 | MS.gene43936 | PPI |
| MS.gene68293 | MS.gene45115 | PPI |
| MS.gene45115 | MS.gene45119 | PPI |
| MS.gene45115 | MS.gene68292 | PPI |
| MS.gene45115 | MS.gene43935 | PPI |
| MS.gene45115 | MS.gene027543 | PPI |
| MS.gene45115 | MS.gene053932 | PPI |
| MS.gene45115 | MS.gene045965 | PPI |
| MS.gene68296 | MS.gene45115 | PPI |
| MS.gene45115 | MS.gene027538 | PPI |
| MS.gene45115 | MS.gene45120 | PPI |
| MS.gene68297 | MS.gene45115 | PPI |
| MS.gene45115 | MS.gene45118 | PPI |
| MS.gene45115 | MS.gene027540 | PPI |
| MS.gene45115 | MS.gene68295 | PPI |
| MS.gene45115 | MS.gene78745 | PPI |
| MS.gene45115 | MS.gene45114 | PPI |
| MS.gene45115 | MS.gene027536 | PPI |
| MS.gene45115 | MS.gene027539 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45115.t1 | MTR_5g035690 | 95.337 | 386 | 18 | 0 | 1 | 386 | 1 | 386 | 0.0 | 768 |
| MS.gene45115.t1 | MTR_5g035665 | 88.083 | 386 | 39 | 1 | 1 | 386 | 1 | 379 | 0.0 | 702 |
| MS.gene45115.t1 | MTR_5g035750 | 87.339 | 387 | 48 | 1 | 1 | 386 | 1 | 387 | 0.0 | 701 |
| MS.gene45115.t1 | MTR_5g035670 | 83.505 | 388 | 55 | 2 | 1 | 386 | 1 | 381 | 0.0 | 657 |
| MS.gene45115.t1 | MTR_5g035760 | 78.608 | 388 | 73 | 3 | 1 | 386 | 1 | 380 | 0.0 | 612 |
| MS.gene45115.t1 | MTR_6g472110 | 51.724 | 406 | 169 | 12 | 1 | 386 | 1 | 399 | 2.28e-130 | 380 |
| MS.gene45115.t1 | MTR_6g016660 | 43.243 | 407 | 201 | 10 | 1 | 386 | 1 | 398 | 2.36e-101 | 306 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45115.t1 | AT1G13480 | 44.472 | 398 | 198 | 10 | 1 | 386 | 1 | 387 | 1.98e-106 | 318 |
| MS.gene45115.t1 | AT1G13530 | 45.885 | 401 | 186 | 13 | 1 | 386 | 1 | 385 | 5.35e-104 | 312 |
| MS.gene45115.t1 | AT1G13510 | 45.113 | 399 | 187 | 13 | 1 | 386 | 1 | 380 | 1.70e-103 | 311 |
| MS.gene45115.t1 | AT1G13520 | 45.137 | 401 | 191 | 12 | 1 | 386 | 1 | 387 | 3.76e-103 | 310 |
| MS.gene45115.t1 | AT1G13540 | 43.719 | 398 | 195 | 11 | 1 | 386 | 1 | 381 | 1.73e-100 | 303 |
| MS.gene45115.t1 | AT1G13490 | 45.477 | 398 | 189 | 10 | 1 | 386 | 1 | 382 | 1.87e-100 | 303 |
| MS.gene45115.t1 | AT1G13470 | 46.465 | 396 | 184 | 13 | 1 | 386 | 1 | 378 | 7.81e-97 | 294 |
| MS.gene45115.t1 | AT1G13550 | 43.641 | 401 | 192 | 14 | 1 | 383 | 1 | 385 | 9.04e-95 | 289 |
| MS.gene45115.t1 | AT1G13500 | 44.417 | 403 | 190 | 15 | 1 | 386 | 1 | 386 | 5.86e-92 | 281 |
| MS.gene45115.t1 | AT1G13490 | 43.577 | 397 | 179 | 10 | 1 | 386 | 1 | 363 | 6.09e-92 | 281 |
| MS.gene45115.t1 | AT1G61600 | 38.642 | 427 | 215 | 9 | 1 | 386 | 1 | 421 | 3.74e-89 | 275 |
Find 89 sgRNAs with CRISPR-Local
Find 110 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCTAATGCTTGGCTTAAA+TGG | 0.196314 | 5.1:-26317578 | None:intergenic |
| CCTGGCTTATTAAGGGAAAA+AGG | 0.208156 | 5.1:+26317522 | MS.gene45115:CDS |
| GAATTCCTCCTGGCTTATTA+AGG | 0.210362 | 5.1:+26317514 | MS.gene45115:CDS |
| TTGAAGGAAAGGACGCTATT+TGG | 0.216758 | 5.1:+26317859 | MS.gene45115:CDS |
| CCTTCCTTCACAAACATAAA+TGG | 0.218760 | 5.1:-26317693 | None:intergenic |
| AAGATTGAAAAGTTAAAATT+TGG | 0.222479 | 5.1:-26317627 | None:intergenic |
| GAAGGAAGGAATTAATTTAA+AGG | 0.281181 | 5.1:+26317707 | MS.gene45115:CDS |
| TCAGACACTCACATCAAATT+AGG | 0.281648 | 5.1:+26318144 | MS.gene45115:CDS |
| GAGGAGAATGGATACAAAAT+TGG | 0.283501 | 5.1:+26318106 | MS.gene45115:CDS |
| ATCACAAGATAACCTGAATT+TGG | 0.289417 | 5.1:-26316892 | None:intergenic |
| GAAAAGTGTTGGATTGAGTT+TGG | 0.299597 | 5.1:+26317932 | MS.gene45115:CDS |
| GCTCAAACTTACTCTTGTTT+TGG | 0.301630 | 5.1:+26316928 | MS.gene45115:CDS |
| CCACCATCAGGGCCAAATTC+AGG | 0.344257 | 5.1:+26316880 | MS.gene45115:CDS |
| CACATCAAATTAGGAGCAAA+TGG | 0.354134 | 5.1:+26318153 | MS.gene45115:CDS |
| TGAAGGAAAGGACGCTATTT+GGG | 0.357935 | 5.1:+26317860 | MS.gene45115:CDS |
| AAAGTTAAAATTTGGTAGCT+TGG | 0.363690 | 5.1:-26317619 | None:intergenic |
| ATTCTTGATTCTATTGTCCT+TGG | 0.390390 | 5.1:-26316956 | None:intergenic |
| ACAAAAGTTGAAGAGTTTGA+TGG | 0.392275 | 5.1:+26318029 | MS.gene45115:CDS |
| TTGGCTTAAATGGTAGTTGC+GGG | 0.394226 | 5.1:-26317568 | None:intergenic |
| CCTTTGAACTTCTATTAGCT+TGG | 0.394539 | 5.1:-26317350 | None:intergenic |
| AATTCCTCCTGGCTTATTAA+GGG | 0.397833 | 5.1:+26317515 | MS.gene45115:CDS |
| GACAATGGTTGATTCAATAC+TGG | 0.398389 | 5.1:-26317081 | None:intergenic |
| AAGTTATTCTTTGAGGAGAA+TGG | 0.403630 | 5.1:+26318094 | MS.gene45115:CDS |
| GCCTCTGATGGAATTCCTCC+TGG | 0.425563 | 5.1:+26317504 | MS.gene45115:CDS |
| CTTTCCAACAACCACTGATT+CGG | 0.426945 | 5.1:-26317661 | None:intergenic |
| GAAAGGTTTGGATGGAATGC+TGG | 0.429285 | 5.1:+26317984 | MS.gene45115:CDS |
| TACCATTTAAGCCAAGCATT+AGG | 0.431877 | 5.1:+26317576 | MS.gene45115:CDS |
| AGCTAACACTTGAGCAAAGA+TGG | 0.431951 | 5.1:+26317757 | MS.gene45115:CDS |
| AAATGGGAACAAGAAAGGTT+TGG | 0.437035 | 5.1:+26317972 | MS.gene45115:CDS |
| TATTTGGGATGAAAATAGAT+TGG | 0.437437 | 5.1:+26317875 | MS.gene45115:CDS |
| TGGTTGAAAGTTATTCTTTG+AGG | 0.448102 | 5.1:+26318087 | MS.gene45115:CDS |
| GCCCTTCAATGATTATCAAC+AGG | 0.448229 | 5.1:+26317437 | MS.gene45115:CDS |
| ACAGAAGTTGCTAAGGTTGA+AGG | 0.453239 | 5.1:+26317843 | MS.gene45115:CDS |
| CTTTCAGACCCACCACCATC+AGG | 0.453725 | 5.1:+26316868 | MS.gene45115:CDS |
| GGCTTCTTTCCATGTACAAA+AGG | 0.457238 | 5.1:+26316833 | MS.gene45115:CDS |
| GCAAAATCCGTTGCCTCTGA+TGG | 0.460171 | 5.1:+26317492 | MS.gene45115:CDS |
| AGAAGGAAGGGGAAATATCA+AGG | 0.463926 | 5.1:+26317126 | MS.gene45115:CDS |
| GATGAAAATAGATTGGTTGA+TGG | 0.465731 | 5.1:+26317882 | MS.gene45115:CDS |
| TCAGGTGTAAACAGTCAAAC+AGG | 0.465795 | 5.1:+26317021 | MS.gene45115:CDS |
| TACCTGTTGATAATCATTGA+AGG | 0.466990 | 5.1:-26317439 | None:intergenic |
| GAATTTGGCCCTGATGGTGG+TGG | 0.471784 | 5.1:-26316877 | None:intergenic |
| TTGAAGGGCTCTAAAGCTAC+TGG | 0.471796 | 5.1:-26317423 | None:intergenic |
| AGTGTTGAAGAGAAAAGTGT+TGG | 0.479275 | 5.1:+26317921 | MS.gene45115:CDS |
| GTTTGGATGGAATGCTGGGA+AGG | 0.480324 | 5.1:+26317989 | MS.gene45115:CDS |
| GTAACCATCAGTTATTCATC+AGG | 0.482475 | 5.1:+26317003 | MS.gene45115:CDS |
| AATCATTTGAACCTAATGCT+TGG | 0.490134 | 5.1:-26317587 | None:intergenic |
| GAAATTTAGTTGTTATGTGC+TGG | 0.495601 | 5.1:+26318067 | MS.gene45115:CDS |
| CCAAGCTAATAGAAGTTCAA+AGG | 0.497400 | 5.1:+26317350 | MS.gene45115:CDS |
| CCATTTATGTTTGTGAAGGA+AGG | 0.497881 | 5.1:+26317693 | MS.gene45115:CDS |
| TAATAGAAGTTCAAAGGAAG+AGG | 0.503073 | 5.1:+26317356 | MS.gene45115:CDS |
| ATCGCTATTATGTTATAAGA+AGG | 0.507064 | 5.1:+26317109 | MS.gene45115:CDS |
| TTTGGATGGAATGCTGGGAA+GGG | 0.507438 | 5.1:+26317990 | MS.gene45115:CDS |
| TCAAAGGAAAATAGTGGAGA+AGG | 0.518058 | 5.1:+26317792 | MS.gene45115:CDS |
| GGGAACAAGAAAGGTTTGGA+TGG | 0.524181 | 5.1:+26317976 | MS.gene45115:CDS |
| ATTTGGTAGCTTGGAACGCA+AGG | 0.525950 | 5.1:-26317610 | None:intergenic |
| GAATGAAATGGGAACAAGAA+AGG | 0.531154 | 5.1:+26317967 | MS.gene45115:CDS |
| TATTCAAACAGAAGTTGCTA+AGG | 0.531497 | 5.1:+26317836 | MS.gene45115:CDS |
| AGTTTGATGGAACAAACAAA+TGG | 0.536388 | 5.1:+26318042 | MS.gene45115:CDS |
| ACATCAAATTAGGAGCAAAT+GGG | 0.536534 | 5.1:+26318154 | MS.gene45115:CDS |
| AATTTGGCCCTGATGGTGGT+GGG | 0.541325 | 5.1:-26316876 | None:intergenic |
| ACCTGTTGATAATCATTGAA+GGG | 0.546054 | 5.1:-26317438 | None:intergenic |
| AGTTGTTGAGGGAATGAAAT+GGG | 0.546947 | 5.1:+26317956 | MS.gene45115:CDS |
| CTATTATGTTATAAGAAGGA+AGG | 0.557905 | 5.1:+26317113 | MS.gene45115:CDS |
| CTTGGCTTAAATGGTAGTTG+CGG | 0.559548 | 5.1:-26317569 | None:intergenic |
| TTGAGTTTGGAAGTTGTTGA+GGG | 0.559577 | 5.1:+26317945 | MS.gene45115:CDS |
| AAAGGTTTGGATGGAATGCT+GGG | 0.561735 | 5.1:+26317985 | MS.gene45115:CDS |
| AATCAGTGGTTGTTGGAAAG+TGG | 0.563048 | 5.1:+26317664 | MS.gene45115:CDS |
| TAACCTGAATTTGGCCCTGA+TGG | 0.566146 | 5.1:-26316883 | None:intergenic |
| TATTATGTTATAAGAAGGAA+GGG | 0.576465 | 5.1:+26317114 | MS.gene45115:CDS |
| TAATGATTGTTCCGAATCAG+TGG | 0.577534 | 5.1:+26317650 | MS.gene45115:CDS |
| TGTTCCGAATCAGTGGTTGT+TGG | 0.577833 | 5.1:+26317657 | MS.gene45115:CDS |
| TTGTCCATTTATGTTTGTGA+AGG | 0.585966 | 5.1:+26317689 | MS.gene45115:CDS |
| AGGAATTCCATCAGAGGCAA+CGG | 0.588713 | 5.1:-26317499 | None:intergenic |
| GAACATAGCTTCTTCACTGT+GGG | 0.591417 | 5.1:-26317055 | None:intergenic |
| ATTGAGTTTGGAAGTTGTTG+AGG | 0.595211 | 5.1:+26317944 | MS.gene45115:CDS |
| AGTTGCTAAGGTTGAAGGAA+AGG | 0.599670 | 5.1:+26317848 | MS.gene45115:CDS |
| GAAGGAAGGGGAAATATCAA+GGG | 0.603366 | 5.1:+26317127 | MS.gene45115:CDS |
| GGTGGGTCTGAAAGAGCACT+AGG | 0.608877 | 5.1:-26316859 | None:intergenic |
| AAGTTGTTGAGGGAATGAAA+TGG | 0.611433 | 5.1:+26317955 | MS.gene45115:CDS |
| GCTAACACTTGAGCAAAGAT+GGG | 0.612705 | 5.1:+26317758 | MS.gene45115:CDS |
| CCTGAATTTGGCCCTGATGG+TGG | 0.613907 | 5.1:-26316880 | None:intergenic |
| TGGCTTAAATGGTAGTTGCG+GGG | 0.627549 | 5.1:-26317567 | None:intergenic |
| GCCAGGAGGAATTCCATCAG+AGG | 0.628216 | 5.1:-26317505 | None:intergenic |
| TTTCAGACCCACCACCATCA+GGG | 0.636827 | 5.1:+26316869 | MS.gene45115:CDS |
| AAAACTACAACAAAAGCATG+TGG | 0.665724 | 5.1:-26317385 | None:intergenic |
| TGAACATAGCTTCTTCACTG+TGG | 0.668145 | 5.1:-26317056 | None:intergenic |
| ATTATGTTATAAGAAGGAAG+GGG | 0.668280 | 5.1:+26317115 | MS.gene45115:CDS |
| TACACCTGATGAATAACTGA+TGG | 0.673557 | 5.1:-26317007 | None:intergenic |
| TAATAGCGATTAGAAGACAA+TGG | 0.675741 | 5.1:-26317096 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGATTGAAAAGTTAAAATT+TGG | - | chr5.1:26317630-26317649 | None:intergenic | 15.0% |
| !!! | AGACATAATTATATTTTTGT+TGG | + | chr5.1:26317228-26317247 | MS.gene45115:intron | 15.0% |
| !! | GAAATAATCAAAAAAGGTTA+TGG | + | chr5.1:26317462-26317481 | MS.gene45115:CDS | 20.0% |
| !! | TATTATGTTATAAGAAGGAA+GGG | + | chr5.1:26317114-26317133 | MS.gene45115:CDS | 20.0% |
| !!! | ATATTTTCAAAGGAAAATAG+TGG | + | chr5.1:26317786-26317805 | MS.gene45115:CDS | 20.0% |
| !!! | GTTGATTTATAAAGTAATAG+AGG | + | chr5.1:26317288-26317307 | MS.gene45115:intron | 20.0% |
| ! | ATCGCTATTATGTTATAAGA+AGG | + | chr5.1:26317109-26317128 | MS.gene45115:CDS | 25.0% |
| ! | ATTATGTTATAAGAAGGAAG+GGG | + | chr5.1:26317115-26317134 | MS.gene45115:CDS | 25.0% |
| ! | CAGGTAGAAATAATCAAAAA+AGG | + | chr5.1:26317456-26317475 | MS.gene45115:CDS | 25.0% |
| ! | CTATTATGTTATAAGAAGGA+AGG | + | chr5.1:26317113-26317132 | MS.gene45115:CDS | 25.0% |
| ! | GAAGGAAGGAATTAATTTAA+AGG | + | chr5.1:26317707-26317726 | MS.gene45115:CDS | 25.0% |
| ! | TCATATTACAATTCTCTGTT+GGG | - | chr5.1:26317209-26317228 | None:intergenic | 25.0% |
| ! | TGGTAATTAGTTAACTTTCA+TGG | + | chr5.1:26317248-26317267 | MS.gene45115:intron | 25.0% |
| !! | AAAGTTAAAATTTGGTAGCT+TGG | - | chr5.1:26317622-26317641 | None:intergenic | 25.0% |
| !! | TATTTGGGATGAAAATAGAT+TGG | + | chr5.1:26317875-26317894 | MS.gene45115:CDS | 25.0% |
| AATCATTTGAACCTAATGCT+TGG | - | chr5.1:26317590-26317609 | None:intergenic | 30.0% | |
| ACAAAAGTTGAAGAGTTTGA+TGG | + | chr5.1:26318029-26318048 | MS.gene45115:CDS | 30.0% | |
| ACATCAAATTAGGAGCAAAT+GGG | + | chr5.1:26318154-26318173 | MS.gene45115:CDS | 30.0% | |
| AGTTTGATGGAACAAACAAA+TGG | + | chr5.1:26318042-26318061 | MS.gene45115:CDS | 30.0% | |
| ATCACAAGATAACCTGAATT+TGG | - | chr5.1:26316895-26316914 | None:intergenic | 30.0% | |
| ATTCTTGATTCTATTGTCCT+TGG | - | chr5.1:26316959-26316978 | None:intergenic | 30.0% | |
| CATGGTTAAAGAAAGAGAAA+TGG | + | chr5.1:26317266-26317285 | MS.gene45115:intron | 30.0% | |
| CTCATATTACAATTCTCTGT+TGG | - | chr5.1:26317210-26317229 | None:intergenic | 30.0% | |
| GAAATTTAGTTGTTATGTGC+TGG | + | chr5.1:26318067-26318086 | MS.gene45115:CDS | 30.0% | |
| TAATAGAAGTTCAAAGGAAG+AGG | + | chr5.1:26317356-26317375 | MS.gene45115:CDS | 30.0% | |
| TAATAGCGATTAGAAGACAA+TGG | - | chr5.1:26317099-26317118 | None:intergenic | 30.0% | |
| TATTCAAACAGAAGTTGCTA+AGG | + | chr5.1:26317836-26317855 | MS.gene45115:CDS | 30.0% | |
| TGGTTGAAAGTTATTCTTTG+AGG | + | chr5.1:26318087-26318106 | MS.gene45115:CDS | 30.0% | |
| TTGTCCATTTATGTTTGTGA+AGG | + | chr5.1:26317689-26317708 | MS.gene45115:CDS | 30.0% | |
| ! | AAAACTACAACAAAAGCATG+TGG | - | chr5.1:26317388-26317407 | None:intergenic | 30.0% |
| ! | AAGTTATTCTTTGAGGAGAA+TGG | + | chr5.1:26318094-26318113 | MS.gene45115:CDS | 30.0% |
| ! | ATGGGAGAAGATATTTTCAA+AGG | + | chr5.1:26317776-26317795 | MS.gene45115:CDS | 30.0% |
| ! | ATGGTTACATTTTTGTTCTG+AGG | - | chr5.1:26316991-26317010 | None:intergenic | 30.0% |
| ! | GATGAAAATAGATTGGTTGA+TGG | + | chr5.1:26317882-26317901 | MS.gene45115:CDS | 30.0% |
| !! | ACCTGTTGATAATCATTGAA+GGG | - | chr5.1:26317441-26317460 | None:intergenic | 30.0% |
| !! | TACCTGTTGATAATCATTGA+AGG | - | chr5.1:26317442-26317461 | None:intergenic | 30.0% |
| AAATGGGAACAAGAAAGGTT+TGG | + | chr5.1:26317972-26317991 | MS.gene45115:CDS | 35.0% | |
| AACCTAATGCTTGGCTTAAA+TGG | - | chr5.1:26317581-26317600 | None:intergenic | 35.0% | |
| AAGTTGTTGAGGGAATGAAA+TGG | + | chr5.1:26317955-26317974 | MS.gene45115:CDS | 35.0% | |
| AATTCCTCCTGGCTTATTAA+GGG | + | chr5.1:26317515-26317534 | MS.gene45115:CDS | 35.0% | |
| AGTTGTTGAGGGAATGAAAT+GGG | + | chr5.1:26317956-26317975 | MS.gene45115:CDS | 35.0% | |
| ATTGAGTTTGGAAGTTGTTG+AGG | + | chr5.1:26317944-26317963 | MS.gene45115:CDS | 35.0% | |
| CACATCAAATTAGGAGCAAA+TGG | + | chr5.1:26318153-26318172 | MS.gene45115:CDS | 35.0% | |
| CCAAGCTAATAGAAGTTCAA+AGG | + | chr5.1:26317350-26317369 | MS.gene45115:CDS | 35.0% | |
| CCATTTATGTTTGTGAAGGA+AGG | + | chr5.1:26317693-26317712 | MS.gene45115:CDS | 35.0% | |
| CCTTCCTTCACAAACATAAA+TGG | - | chr5.1:26317696-26317715 | None:intergenic | 35.0% | |
| CCTTTGAACTTCTATTAGCT+TGG | - | chr5.1:26317353-26317372 | None:intergenic | 35.0% | |
| CTGGCTTATTAAGGGAAAAA+GGG | + | chr5.1:26317523-26317542 | MS.gene45115:CDS | 35.0% | |
| GAATGAAATGGGAACAAGAA+AGG | + | chr5.1:26317967-26317986 | MS.gene45115:CDS | 35.0% | |
| GAGGAGAATGGATACAAAAT+TGG | + | chr5.1:26318106-26318125 | MS.gene45115:CDS | 35.0% | |
| GTAACCATCAGTTATTCATC+AGG | + | chr5.1:26317003-26317022 | MS.gene45115:CDS | 35.0% | |
| TAATGATTGTTCCGAATCAG+TGG | + | chr5.1:26317650-26317669 | MS.gene45115:CDS | 35.0% | |
| TACACCTGATGAATAACTGA+TGG | - | chr5.1:26317010-26317029 | None:intergenic | 35.0% | |
| TACCATTTAAGCCAAGCATT+AGG | + | chr5.1:26317576-26317595 | MS.gene45115:CDS | 35.0% | |
| TCAGACACTCACATCAAATT+AGG | + | chr5.1:26318144-26318163 | MS.gene45115:CDS | 35.0% | |
| TTGAGTTTGGAAGTTGTTGA+GGG | + | chr5.1:26317945-26317964 | MS.gene45115:CDS | 35.0% | |
| ! | ACTAGGATTCCTTTTGTACA+TGG | - | chr5.1:26316845-26316864 | None:intergenic | 35.0% |
| ! | AGTGTTGAAGAGAAAAGTGT+TGG | + | chr5.1:26317921-26317940 | MS.gene45115:CDS | 35.0% |
| ! | GACAATGGTTGATTCAATAC+TGG | - | chr5.1:26317084-26317103 | None:intergenic | 35.0% |
| ! | TCAAAGGAAAATAGTGGAGA+AGG | + | chr5.1:26317792-26317811 | MS.gene45115:CDS | 35.0% |
| !! | GAAAAGTGTTGGATTGAGTT+TGG | + | chr5.1:26317932-26317951 | MS.gene45115:CDS | 35.0% |
| !! | GCTCAAACTTACTCTTGTTT+TGG | + | chr5.1:26316928-26316947 | MS.gene45115:CDS | 35.0% |
| !!! | ACATTTTTGTTCTGAGGTAG+AGG | - | chr5.1:26316985-26317004 | None:intergenic | 35.0% |
| AAAGGTTTGGATGGAATGCT+GGG | + | chr5.1:26317985-26318004 | MS.gene45115:CDS | 40.0% | |
| AATCAGTGGTTGTTGGAAAG+TGG | + | chr5.1:26317664-26317683 | MS.gene45115:CDS | 40.0% | |
| AATTCTCTGTTGGGATAGCA+GGG | - | chr5.1:26317200-26317219 | None:intergenic | 40.0% | |
| ACAGAAGTTGCTAAGGTTGA+AGG | + | chr5.1:26317843-26317862 | MS.gene45115:CDS | 40.0% | |
| AGAAGGAAGGGGAAATATCA+AGG | + | chr5.1:26317126-26317145 | MS.gene45115:CDS | 40.0% | |
| AGCTAACACTTGAGCAAAGA+TGG | + | chr5.1:26317757-26317776 | MS.gene45115:CDS | 40.0% | |
| AGTTGCTAAGGTTGAAGGAA+AGG | + | chr5.1:26317848-26317867 | MS.gene45115:CDS | 40.0% | |
| CCTGGCTTATTAAGGGAAAA+AGG | + | chr5.1:26317522-26317541 | MS.gene45115:CDS | 40.0% | |
| CTTGGCTTAAATGGTAGTTG+CGG | - | chr5.1:26317572-26317591 | None:intergenic | 40.0% | |
| GAACATAGCTTCTTCACTGT+GGG | - | chr5.1:26317058-26317077 | None:intergenic | 40.0% | |
| GAAGGAAGGGGAAATATCAA+GGG | + | chr5.1:26317127-26317146 | MS.gene45115:CDS | 40.0% | |
| GAATTCCTCCTGGCTTATTA+AGG | + | chr5.1:26317514-26317533 | MS.gene45115:CDS | 40.0% | |
| GCCCTTCAATGATTATCAAC+AGG | + | chr5.1:26317437-26317456 | MS.gene45115:CDS | 40.0% | |
| GCTAACACTTGAGCAAAGAT+GGG | + | chr5.1:26317758-26317777 | MS.gene45115:CDS | 40.0% | |
| GCTTATTAAGGGAAAAAGGG+TGG | + | chr5.1:26317526-26317545 | MS.gene45115:CDS | 40.0% | |
| GGCTTCTTTCCATGTACAAA+AGG | + | chr5.1:26316833-26316852 | MS.gene45115:CDS | 40.0% | |
| TCAGGTGTAAACAGTCAAAC+AGG | + | chr5.1:26317021-26317040 | MS.gene45115:CDS | 40.0% | |
| TGAACATAGCTTCTTCACTG+TGG | - | chr5.1:26317059-26317078 | None:intergenic | 40.0% | |
| TGAAGGAAAGGACGCTATTT+GGG | + | chr5.1:26317860-26317879 | MS.gene45115:CDS | 40.0% | |
| TTGAAGGAAAGGACGCTATT+TGG | + | chr5.1:26317859-26317878 | MS.gene45115:CDS | 40.0% | |
| TTGGCTTAAATGGTAGTTGC+GGG | - | chr5.1:26317571-26317590 | None:intergenic | 40.0% | |
| ! | CCTTTTTCCCTTAATAAGCC+AGG | - | chr5.1:26317525-26317544 | None:intergenic | 40.0% |
| ! | CTTTCCAACAACCACTGATT+CGG | - | chr5.1:26317664-26317683 | None:intergenic | 40.0% |
| ! | TTTTCCCTTAATAAGCCAGG+AGG | - | chr5.1:26317522-26317541 | None:intergenic | 40.0% |
| !!! | CTCTTGTTTTGGTTTGTCCA+AGG | + | chr5.1:26316939-26316958 | MS.gene45115:CDS | 40.0% |
| !!! | GATTGGTTGATGGAGTTTTG+TGG | + | chr5.1:26317892-26317911 | MS.gene45115:CDS | 40.0% |
| AGGAATTCCATCAGAGGCAA+CGG | - | chr5.1:26317502-26317521 | None:intergenic | 45.0% | |
| CAATTCTCTGTTGGGATAGC+AGG | - | chr5.1:26317201-26317220 | None:intergenic | 45.0% | |
| GAAAGGTTTGGATGGAATGC+TGG | + | chr5.1:26317984-26318003 | MS.gene45115:CDS | 45.0% | |
| GGGAACAAGAAAGGTTTGGA+TGG | + | chr5.1:26317976-26317995 | MS.gene45115:CDS | 45.0% | |
| TAACCTGAATTTGGCCCTGA+TGG | - | chr5.1:26316886-26316905 | None:intergenic | 45.0% | |
| TGGCTTAAATGGTAGTTGCG+GGG | - | chr5.1:26317570-26317589 | None:intergenic | 45.0% | |
| TGTTCCGAATCAGTGGTTGT+TGG | + | chr5.1:26317657-26317676 | MS.gene45115:CDS | 45.0% | |
| TTTGGATGGAATGCTGGGAA+GGG | + | chr5.1:26317990-26318009 | MS.gene45115:CDS | 45.0% | |
| ! | ATTTGGTAGCTTGGAACGCA+AGG | - | chr5.1:26317613-26317632 | None:intergenic | 45.0% |
| !! | TTGAAGGGCTCTAAAGCTAC+TGG | - | chr5.1:26317426-26317445 | None:intergenic | 45.0% |
| GCAAAATCCGTTGCCTCTGA+TGG | + | chr5.1:26317492-26317511 | MS.gene45115:CDS | 50.0% | |
| GTTTGGATGGAATGCTGGGA+AGG | + | chr5.1:26317989-26318008 | MS.gene45115:CDS | 50.0% | |
| TTTCAGACCCACCACCATCA+GGG | + | chr5.1:26316869-26316888 | MS.gene45115:CDS | 50.0% | |
| !! | AATTTGGCCCTGATGGTGGT+GGG | - | chr5.1:26316879-26316898 | None:intergenic | 50.0% |
| CCACCATCAGGGCCAAATTC+AGG | + | chr5.1:26316880-26316899 | MS.gene45115:CDS | 55.0% | |
| CCTGAATTTGGCCCTGATGG+TGG | - | chr5.1:26316883-26316902 | None:intergenic | 55.0% | |
| CTTTCAGACCCACCACCATC+AGG | + | chr5.1:26316868-26316887 | MS.gene45115:CDS | 55.0% | |
| GCCAGGAGGAATTCCATCAG+AGG | - | chr5.1:26317508-26317527 | None:intergenic | 55.0% | |
| GCCTCTGATGGAATTCCTCC+TGG | + | chr5.1:26317504-26317523 | MS.gene45115:CDS | 55.0% | |
| !! | GAATTTGGCCCTGATGGTGG+TGG | - | chr5.1:26316880-26316899 | None:intergenic | 55.0% |
| !! | GGTGGGTCTGAAAGAGCACT+AGG | - | chr5.1:26316862-26316881 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 26316820 | 26318181 | 26316820 | ID=MS.gene45115 |
| chr5.1 | mRNA | 26316820 | 26318181 | 26316820 | ID=MS.gene45115.t1;Parent=MS.gene45115 |
| chr5.1 | exon | 26316820 | 26317148 | 26316820 | ID=MS.gene45115.t1.exon1;Parent=MS.gene45115.t1 |
| chr5.1 | CDS | 26316820 | 26317148 | 26316820 | ID=cds.MS.gene45115.t1;Parent=MS.gene45115.t1 |
| chr5.1 | exon | 26317350 | 26318181 | 26317350 | ID=MS.gene45115.t1.exon2;Parent=MS.gene45115.t1 |
| chr5.1 | CDS | 26317350 | 26318181 | 26317350 | ID=cds.MS.gene45115.t1;Parent=MS.gene45115.t1 |
| Gene Sequence |
| Protein sequence |
