Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24408.t1 | XP_003589192.1 | 93.9 | 919 | 55 | 1 | 1 | 918 | 1 | 919 | 0.00E+00 | 1138.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24408.t1 | O48724 | 58.7 | 698 | 256 | 9 | 242 | 913 | 114 | 805 | 7.4e-55 | 217.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24408.t1 | G7I3K8 | 93.9 | 919 | 55 | 1 | 1 | 918 | 1 | 919 | 0.0e+00 | 1138.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049181 | MS.gene24408 | 0.817666 | 2.93E-52 | -1.69E-46 |
| MS.gene049182 | MS.gene24408 | 0.845042 | 5.20E-59 | -1.69E-46 |
| MS.gene050379 | MS.gene24408 | 0.838417 | 2.91E-57 | -1.69E-46 |
| MS.gene050416 | MS.gene24408 | 0.834918 | 2.27E-56 | -1.69E-46 |
| MS.gene050961 | MS.gene24408 | 0.808311 | 3.30E-50 | -1.69E-46 |
| MS.gene05156 | MS.gene24408 | 0.811015 | 8.65E-51 | -1.69E-46 |
| MS.gene051959 | MS.gene24408 | 0.833788 | 4.36E-56 | -1.69E-46 |
| MS.gene051960 | MS.gene24408 | 0.838642 | 2.55E-57 | -1.69E-46 |
| MS.gene052040 | MS.gene24408 | 0.867919 | 9.59E-66 | -1.69E-46 |
| MS.gene052053 | MS.gene24408 | 0.833969 | 3.93E-56 | -1.69E-46 |
| MS.gene052560 | MS.gene24408 | 0.809788 | 1.59E-50 | -1.69E-46 |
| MS.gene052570 | MS.gene24408 | 0.823426 | 1.39E-53 | -1.69E-46 |
| MS.gene052579 | MS.gene24408 | 0.854775 | 9.83E-62 | -1.69E-46 |
| MS.gene053602 | MS.gene24408 | 0.845592 | 3.69E-59 | -1.69E-46 |
| MS.gene055150 | MS.gene24408 | 0.847401 | 1.18E-59 | -1.69E-46 |
| MS.gene055333 | MS.gene24408 | 0.811212 | 7.84E-51 | -1.69E-46 |
| MS.gene055634 | MS.gene24408 | -0.809577 | 1.77E-50 | -1.69E-46 |
| MS.gene05624 | MS.gene24408 | 0.82375 | 1.17E-53 | -1.69E-46 |
| MS.gene056361 | MS.gene24408 | 0.822627 | 2.14E-53 | -1.69E-46 |
| MS.gene056530 | MS.gene24408 | 0.830446 | 2.92E-55 | -1.69E-46 |
| MS.gene057001 | MS.gene24408 | 0.807269 | 5.49E-50 | -1.69E-46 |
| MS.gene057148 | MS.gene24408 | -0.86681 | 2.17E-65 | -1.69E-46 |
| MS.gene057472 | MS.gene24408 | 0.838823 | 2.29E-57 | -1.69E-46 |
| MS.gene058246 | MS.gene24408 | 0.803262 | 3.79E-49 | -1.69E-46 |
| MS.gene05884 | MS.gene24408 | 0.802333 | 5.90E-49 | -1.69E-46 |
| MS.gene059436 | MS.gene24408 | 0.842193 | 3.00E-58 | -1.69E-46 |
| MS.gene059514 | MS.gene24408 | 0.814003 | 1.92E-51 | -1.69E-46 |
| MS.gene05952 | MS.gene24408 | 0.817133 | 3.86E-52 | -1.69E-46 |
| MS.gene059698 | MS.gene24408 | 0.811794 | 5.86E-51 | -1.69E-46 |
| MS.gene060237 | MS.gene24408 | 0.846124 | 2.65E-59 | -1.69E-46 |
| MS.gene060338 | MS.gene24408 | 0.842756 | 2.13E-58 | -1.69E-46 |
| MS.gene060522 | MS.gene24408 | 0.839312 | 1.71E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24408.t1 | MTR_1g019490 | 95.647 | 919 | 39 | 1 | 1 | 918 | 1 | 919 | 0.0 | 1710 |
| MS.gene24408.t1 | MTR_3g101660 | 65.666 | 766 | 238 | 6 | 167 | 918 | 193 | 947 | 0.0 | 923 |
| MS.gene24408.t1 | MTR_8g070840 | 47.807 | 684 | 291 | 12 | 246 | 915 | 3 | 634 | 2.56e-154 | 468 |
| MS.gene24408.t1 | MTR_3g060660 | 27.116 | 697 | 422 | 17 | 249 | 918 | 4 | 641 | 4.46e-27 | 118 |
| MS.gene24408.t1 | MTR_2g027130 | 26.612 | 605 | 373 | 17 | 252 | 833 | 7 | 563 | 1.82e-22 | 103 |
| MS.gene24408.t1 | MTR_7g072550 | 30.712 | 267 | 175 | 6 | 575 | 839 | 177 | 435 | 2.74e-19 | 93.2 |
| MS.gene24408.t1 | MTR_7g072550 | 43.925 | 107 | 56 | 3 | 260 | 362 | 18 | 124 | 8.73e-11 | 66.2 |
| MS.gene24408.t1 | MTR_4g029090 | 32.075 | 265 | 174 | 2 | 574 | 837 | 164 | 423 | 2.77e-19 | 93.2 |
| MS.gene24408.t1 | MTR_3g060660 | 26.282 | 624 | 388 | 13 | 311 | 918 | 63 | 630 | 2.03e-18 | 90.9 |
| MS.gene24408.t1 | MTR_5g096080 | 25.375 | 666 | 440 | 14 | 272 | 918 | 21 | 648 | 3.15e-12 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24408.t1 | AT2G26570 | 60.976 | 697 | 240 | 10 | 243 | 913 | 115 | 805 | 0.0 | 758 |
| MS.gene24408.t1 | AT2G26570 | 60.976 | 697 | 240 | 10 | 243 | 913 | 115 | 805 | 0.0 | 758 |
| MS.gene24408.t1 | AT4G33390 | 58.114 | 647 | 246 | 5 | 271 | 913 | 153 | 778 | 0.0 | 643 |
| MS.gene24408.t1 | AT5G42880 | 46.360 | 673 | 300 | 8 | 257 | 913 | 121 | 748 | 4.58e-158 | 482 |
| MS.gene24408.t1 | AT1G45545 | 44.209 | 708 | 332 | 7 | 220 | 912 | 90 | 749 | 3.19e-150 | 462 |
| MS.gene24408.t1 | AT1G45545 | 44.209 | 708 | 332 | 7 | 220 | 912 | 91 | 750 | 3.25e-150 | 462 |
| MS.gene24408.t1 | AT5G55860 | 25.535 | 654 | 432 | 13 | 272 | 911 | 20 | 632 | 8.59e-15 | 79.3 |
| MS.gene24408.t1 | AT1G12150 | 24.071 | 565 | 380 | 12 | 272 | 830 | 19 | 540 | 4.46e-11 | 67.0 |
| MS.gene24408.t1 | AT1G12150 | 24.071 | 565 | 380 | 12 | 272 | 830 | 19 | 540 | 4.46e-11 | 67.0 |
Find 153 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTCTGGTTTACTACATTT+TGG | 0.153241 | 1.1:-3620902 | None:intergenic |
| CTCCATCATCGTCTCCTTCT+TGG | 0.165235 | 1.1:-3620008 | None:intergenic |
| GGGGCATCTGCTAGTGAATT+TGG | 0.237130 | 1.1:-3618185 | None:intergenic |
| GATCTAACGGCTTCATCTTC+TGG | 0.244045 | 1.1:+3618916 | MS.gene24408:CDS |
| TTCTGAGGTAAATTACTTAA+AGG | 0.258185 | 1.1:+3620134 | MS.gene24408:CDS |
| GGTCATGCAAACAATGAAAA+TGG | 0.264151 | 1.1:+3621002 | MS.gene24408:CDS |
| CGGAGAAAAGCCGGTGAAAT+AGG | 0.268026 | 1.1:+3620879 | MS.gene24408:CDS |
| GATTGCCACAAAAGAGTCTT+TGG | 0.270589 | 1.1:+3619750 | MS.gene24408:CDS |
| TCATGAACTGTTTCTTCTTT+CGG | 0.275067 | 1.1:-3618422 | None:intergenic |
| GCTTCTTTAGTTGATGAAAA+AGG | 0.275514 | 1.1:+3619646 | MS.gene24408:CDS |
| AAGGAAGCTGTTTCTAAGTT+TGG | 0.278467 | 1.1:+3619099 | MS.gene24408:CDS |
| AAAGCACATCCAACTCATTC+AGG | 0.287960 | 1.1:+3621104 | MS.gene24408:CDS |
| GACGCTTCTTGAAGCTTCTT+TGG | 0.305159 | 1.1:-3620342 | None:intergenic |
| GAGATCAAGATTCTCTCAAT+TGG | 0.317442 | 1.1:+3619833 | MS.gene24408:CDS |
| AGCTGAGTTAAATGCCTATA+TGG | 0.326058 | 1.1:+3619972 | MS.gene24408:CDS |
| TACCACTATGATTTATGTTC+TGG | 0.328707 | 1.1:-3620917 | None:intergenic |
| TGCCGTTGCAATTCTCGAAT+TGG | 0.338661 | 1.1:-3620670 | None:intergenic |
| TTTATCATCTAGTGAGTTGA+TGG | 0.341644 | 1.1:-3618267 | None:intergenic |
| AGCAGTTGAGTCGGCCAAAA+AGG | 0.354376 | 1.1:+3620074 | MS.gene24408:CDS |
| AAGGCAAGGGAAGGAAAATT+AGG | 0.367717 | 1.1:+3620813 | MS.gene24408:CDS |
| GTTTGACTTTGATTCCATAT+AGG | 0.370779 | 1.1:-3619986 | None:intergenic |
| AAAATTGTACGAGGAGATTC+CGG | 0.373780 | 1.1:+3619318 | MS.gene24408:CDS |
| GATAGTATCACACCATTTGA+TGG | 0.385892 | 1.1:-3620594 | None:intergenic |
| TTGCCTTGCTTGATGCTCTT+CGG | 0.398129 | 1.1:-3619455 | None:intergenic |
| GGCACTCGTATACCTTGCTT+TGG | 0.399846 | 1.1:-3619569 | None:intergenic |
| CGATGCAGCAACAGCATCTT+CGG | 0.403753 | 1.1:-3619686 | None:intergenic |
| CTTCGGTTTGTGCCCTCTCT+AGG | 0.404658 | 1.1:-3619438 | None:intergenic |
| ATCTGCACATTCTGCACATA+TGG | 0.405198 | 1.1:+3619774 | MS.gene24408:CDS |
| TTCGATGGAAGAGTCATTAT+CGG | 0.407175 | 1.1:-3618240 | None:intergenic |
| GGTTGGAGCTGTTATTATAT+CGG | 0.413352 | 1.1:-3618219 | None:intergenic |
| AGCGTCTGAAGAGGCGAATA+TGG | 0.414635 | 1.1:+3620359 | MS.gene24408:CDS |
| GCTTCTGATGAACAATCTAT+AGG | 0.415441 | 1.1:+3618359 | MS.gene24408:CDS |
| GGCTGCCACACTGGAATCTT+CGG | 0.417044 | 1.1:-3619527 | None:intergenic |
| ACAAAGAAATAGTTGCTAGA+AGG | 0.418428 | 1.1:+3620757 | MS.gene24408:CDS |
| TAAATTACTTGCAGCTCAAA+AGG | 0.423003 | 1.1:+3620473 | MS.gene24408:CDS |
| AATCTGTAACCACAGGTTCC+TGG | 0.423293 | 1.1:-3618813 | None:intergenic |
| TTGTCTTCAACTTCCTCCAT+TGG | 0.430502 | 1.1:-3618137 | None:intergenic |
| CGAGCTGAACAAAACTAAAT+CGG | 0.430709 | 1.1:+3620263 | MS.gene24408:CDS |
| GGCAACCTCGAGTTGCGCCT+TGG | 0.433398 | 1.1:-3619548 | None:intergenic |
| TGGAGTCTCAAAAGAGCAAC+TGG | 0.446933 | 1.1:+3620026 | MS.gene24408:CDS |
| CGATGTTGATCATAATCATA+TGG | 0.453913 | 1.1:+3618541 | MS.gene24408:CDS |
| TAAAGCTTCAAGTTCAGAAT+CGG | 0.460892 | 1.1:-3618477 | None:intergenic |
| TAGAGCAAGAATTAAGAAAG+TGG | 0.463769 | 1.1:+3620838 | MS.gene24408:CDS |
| TCAACATTTCTTGAGGAGGT+TGG | 0.463850 | 1.1:-3618161 | None:intergenic |
| CAAAGAAATAGTTGCTAGAA+GGG | 0.465795 | 1.1:+3620758 | MS.gene24408:CDS |
| TTGCGCCTTGGCTGCCACAC+TGG | 0.466144 | 1.1:-3619536 | None:intergenic |
| AAGAAAATTGCTGAAAATAG+AGG | 0.467267 | 1.1:+3619042 | MS.gene24408:CDS |
| GAAGCTGTTTCTAAGTTTGG+AGG | 0.479133 | 1.1:+3619102 | MS.gene24408:CDS |
| CACCGATGTTAACTCTGTAA+TGG | 0.484336 | 1.1:-3619590 | None:intergenic |
| TGCAAGAGCTTCTGAAAGGT+TGG | 0.484392 | 1.1:+3620506 | MS.gene24408:CDS |
| GAGAAGCTTGTGAAGTGCTT+AGG | 0.488597 | 1.1:+3620397 | MS.gene24408:CDS |
| GCATCAATAACTTCGGTTTG+AGG | 0.490058 | 1.1:-3618730 | None:intergenic |
| TGAAGTGCTTAGGAGAGTAA+AGG | 0.495073 | 1.1:+3620407 | MS.gene24408:CDS |
| AATCGGCAGCTATGGCTCCT+AGG | 0.499690 | 1.1:-3618460 | None:intergenic |
| CATTGTACTAGCACCAGCCT+TGG | 0.500187 | 1.1:-3620445 | None:intergenic |
| GAAGCTTCTTTGGCAGCTCA+AGG | 0.501880 | 1.1:-3620332 | None:intergenic |
| GGACTTGAAAAGTAATGTAC+AGG | 0.501997 | 1.1:-3620969 | None:intergenic |
| TGATAATCACATGGATCTAA+CGG | 0.503541 | 1.1:+3618903 | MS.gene24408:CDS |
| AATGAAGTGGATCCATCAAA+TGG | 0.505603 | 1.1:+3620582 | MS.gene24408:CDS |
| AGATCAAGATTCTCTCAATT+GGG | 0.505960 | 1.1:+3619834 | MS.gene24408:CDS |
| AAAGCTCAGAGTGGAAGAAA+TGG | 0.509731 | 1.1:+3619492 | MS.gene24408:CDS |
| AATCATCGCTTGCCTCGATT+AGG | 0.512741 | 1.1:+3620196 | MS.gene24408:CDS |
| ACGAGGAGATTCCGGAGTAC+AGG | 0.513676 | 1.1:+3619326 | MS.gene24408:CDS |
| GAATGATCACAAAGAACTAA+AGG | 0.515894 | 1.1:+3618954 | MS.gene24408:CDS |
| AACTTCAGCATCTGAGGTTG+AGG | 0.515980 | 1.1:-3618770 | None:intergenic |
| AAGTTCAGAATCGGCAGCTA+TGG | 0.516741 | 1.1:-3618468 | None:intergenic |
| AGTGCTTAGGAGAGTAAAGG+AGG | 0.520512 | 1.1:+3620410 | MS.gene24408:CDS |
| GAAGCAGAAGAACACAGAAT+AGG | 0.520706 | 1.1:+3619796 | MS.gene24408:CDS |
| AGATTCCAGTGTGGCAGCCA+AGG | 0.524007 | 1.1:+3619531 | MS.gene24408:CDS |
| TGAGTTGATGGAAGCTTCGA+TGG | 0.525513 | 1.1:-3618255 | None:intergenic |
| ACATCAGGAATCTTGATTTG+AGG | 0.528054 | 1.1:-3618985 | None:intergenic |
| TGGATAAATCTGAGAAGGCA+AGG | 0.529566 | 1.1:+3620799 | MS.gene24408:CDS |
| TGGAGGAATTGTCGATTGGA+AGG | 0.530992 | 1.1:+3619119 | MS.gene24408:CDS |
| AACTTCATTCAACTTCTCCA+TGG | 0.531531 | 1.1:-3620733 | None:intergenic |
| GCTTCAACTGTTACTGCTAA+CGG | 0.531998 | 1.1:+3618518 | MS.gene24408:CDS |
| CATGGACAACGGAGAAAAGC+CGG | 0.537596 | 1.1:+3620870 | MS.gene24408:CDS |
| ACACTTCCATCAGCAACATC+AGG | 0.542110 | 1.1:-3619000 | None:intergenic |
| GGAATCATTGAAGATTGCTA+TGG | 0.544639 | 1.1:+3620779 | MS.gene24408:CDS |
| TTGAGGAGCATCAATAACTT+CGG | 0.545249 | 1.1:-3618737 | None:intergenic |
| TCCTCACCGGATGTGAAAAG+TGG | 0.546596 | 1.1:+3621026 | MS.gene24408:CDS |
| TGTCAAGCTCCTGAAGTACT+TGG | 0.546825 | 1.1:-3619381 | None:intergenic |
| ATGGAAGAGTCATTATCGGT+TGG | 0.547014 | 1.1:-3618236 | None:intergenic |
| AACCAAGAAGGAGACGATGA+TGG | 0.552427 | 1.1:+3620006 | MS.gene24408:CDS |
| CAACTCTTCTGTTACAGAAG+AGG | 0.555295 | 1.1:-3618576 | None:intergenic |
| GTTTGCATGACCATAAGACT+TGG | 0.556311 | 1.1:-3620991 | None:intergenic |
| AAGCACATCCAACTCATTCA+GGG | 0.559299 | 1.1:+3621105 | MS.gene24408:CDS |
| AGTTTGGAGGAATTGTCGAT+TGG | 0.559426 | 1.1:+3619115 | MS.gene24408:CDS |
| GAAGCAGAACAAGCCAAGGC+TGG | 0.560630 | 1.1:+3620432 | MS.gene24408:CDS |
| TGGTTCAACATTTCTTGAGG+AGG | 0.561487 | 1.1:-3618165 | None:intergenic |
| TGTTCAGAATCTGTAACCAC+AGG | 0.562263 | 1.1:-3618820 | None:intergenic |
| TGATATTGTGAACATGCATA+AGG | 0.563041 | 1.1:+3618855 | MS.gene24408:CDS |
| TTCTGAGATCGATATAGCTA+AGG | 0.564068 | 1.1:+3620695 | MS.gene24408:CDS |
| TGAGGTAAATTACTTAAAGG+TGG | 0.567020 | 1.1:+3620137 | MS.gene24408:CDS |
| AACTCGAGGTTGCCAAAGCA+AGG | 0.569107 | 1.1:+3619557 | MS.gene24408:CDS |
| GGAGACTGAATTGAAAACCA+TGG | 0.569236 | 1.1:+3620716 | MS.gene24408:CDS |
| AAGATTCCTGATGTTGCTGA+TGG | 0.570955 | 1.1:+3618994 | MS.gene24408:CDS |
| AAGATTCTCTCAATTGGGAG+AGG | 0.572141 | 1.1:+3619839 | MS.gene24408:CDS |
| GATTAGGCAAAGAGAGGGAA+TGG | 0.573233 | 1.1:+3620212 | MS.gene24408:CDS |
| GCTTCAAGAAGCGTCTGAAG+AGG | 0.573977 | 1.1:+3620350 | MS.gene24408:CDS |
| AACTAAAACTGAGCCTAGAG+AGG | 0.574371 | 1.1:+3619425 | MS.gene24408:CDS |
| AACCAGAACATAAATCATAG+TGG | 0.575238 | 1.1:+3620915 | MS.gene24408:CDS |
| ATCAAATGGTGTGATACTAT+CGG | 0.575258 | 1.1:+3620596 | MS.gene24408:CDS |
| CGAGTTAGATTCGTTGCGTG+TGG | 0.575491 | 1.1:+3619618 | MS.gene24408:CDS |
| ATTTGGTTCAACATTTCTTG+AGG | 0.575747 | 1.1:-3618168 | None:intergenic |
| TACATGAACTTCAGCATCTG+AGG | 0.576726 | 1.1:-3618776 | None:intergenic |
| TGCTATGGATAAATCTGAGA+AGG | 0.581662 | 1.1:+3620794 | MS.gene24408:CDS |
| GGCAGCCAAGGCGCAACTCG+AGG | 0.584945 | 1.1:+3619543 | MS.gene24408:CDS |
| GAATCAAAGTCAAACCAAGA+AGG | 0.585631 | 1.1:+3619994 | MS.gene24408:CDS |
| TTTGCATGACCATAAGACTT+GGG | 0.589944 | 1.1:-3620990 | None:intergenic |
| CAATGAAAATGGATCCTCAC+CGG | 0.594662 | 1.1:+3621013 | MS.gene24408:CDS |
| AGCTTCTCGAGCAAGCAAGT+TGG | 0.594786 | 1.1:-3620382 | None:intergenic |
| AAACCGAAGAGCATCAAGCA+AGG | 0.595409 | 1.1:+3619452 | MS.gene24408:CDS |
| AGTGACTACCCTGAATGAGT+TGG | 0.597230 | 1.1:-3621113 | None:intergenic |
| GGATAAATCTGAGAAGGCAA+GGG | 0.599722 | 1.1:+3620800 | MS.gene24408:CDS |
| TCCCTCTCTTTGCCTAATCG+AGG | 0.600136 | 1.1:-3620208 | None:intergenic |
| AGCTCCATTCGAATCTGTCA+AGG | 0.606757 | 1.1:+3619080 | MS.gene24408:CDS |
| AGATTCTCTCAATTGGGAGA+GGG | 0.608093 | 1.1:+3619840 | MS.gene24408:CDS |
| AGAAAGTGGAGAGCAGAACA+TGG | 0.609255 | 1.1:+3620852 | MS.gene24408:CDS |
| GCCTCGATTAGGCAAAGAGA+GGG | 0.612208 | 1.1:+3620207 | MS.gene24408:CDS |
| GGAGGAAGCAGAACAAGCCA+AGG | 0.613105 | 1.1:+3620428 | MS.gene24408:CDS |
| TATTTGATTTCAGCGAAGCA+AGG | 0.615921 | 1.1:+3619276 | MS.gene24408:intron |
| GCTTTAGAAGATATACAAGA+TGG | 0.618193 | 1.1:+3618494 | MS.gene24408:CDS |
| AGCCAATTCGAGAATTGCAA+CGG | 0.618494 | 1.1:+3620668 | MS.gene24408:CDS |
| ATCGAAGCAAGTGGAAAAGA+CGG | 0.619879 | 1.1:+3619705 | MS.gene24408:CDS |
| TCCGGAGTACAGGAAAAGAT+CGG | 0.623837 | 1.1:+3619336 | MS.gene24408:CDS |
| GCTTCCTTGACAGATTCGAA+TGG | 0.625828 | 1.1:-3619084 | None:intergenic |
| AAATCTGAGAAGGCAAGGGA+AGG | 0.626732 | 1.1:+3620804 | MS.gene24408:CDS |
| AAGCTGCAAGAGCTTCTGAA+AGG | 0.629129 | 1.1:+3620502 | MS.gene24408:CDS |
| CATAGAGAAAGCTACTTCTG+AGG | 0.629665 | 1.1:+3620119 | MS.gene24408:CDS |
| TAGAAGCAACAACAATGAAG+TGG | 0.641955 | 1.1:+3620569 | MS.gene24408:CDS |
| AATGCAAGCAGCAGTTGAGT+CGG | 0.646409 | 1.1:+3620065 | MS.gene24408:CDS |
| ACACAGAATAGGAACAGTCA+TGG | 0.648205 | 1.1:+3619807 | MS.gene24408:CDS |
| TGCCTCGATTAGGCAAAGAG+AGG | 0.654005 | 1.1:+3620206 | MS.gene24408:CDS |
| TGTAACAGAACAAAGTCACC+AGG | 0.655246 | 1.1:+3618795 | MS.gene24408:CDS |
| AGAACTTGCAAAGCTCAGAG+TGG | 0.657807 | 1.1:+3619483 | MS.gene24408:CDS |
| GATAGACGCAACTGTAATCG+AGG | 0.658612 | 1.1:-3620235 | None:intergenic |
| ACAAAGTCACCAGGAACCTG+TGG | 0.660157 | 1.1:+3618804 | MS.gene24408:CDS |
| CGGCAGCTATGGCTCCTAGG+TGG | 0.667123 | 1.1:-3618457 | None:intergenic |
| ACTAAAACTGAGCCTAGAGA+GGG | 0.671828 | 1.1:+3619426 | MS.gene24408:CDS |
| AGAGTGGAAGAAATGGAGCA+AGG | 0.675194 | 1.1:+3619499 | MS.gene24408:CDS |
| GTGAACATGCATAAGGATGG+TGG | 0.677588 | 1.1:+3618862 | MS.gene24408:CDS |
| ATTGTGAACATGCATAAGGA+TGG | 0.682817 | 1.1:+3618859 | MS.gene24408:CDS |
| TGTTGCTGCATCGAAGCAAG+TGG | 0.684932 | 1.1:+3619696 | MS.gene24408:CDS |
| AAGATTGAGATATACCTCGA+CGG | 0.686708 | 1.1:-3619157 | None:intergenic |
| GAAACAGAAGAAAACCACCT+AGG | 0.696012 | 1.1:+3618443 | MS.gene24408:CDS |
| TCATCGAATGATAGCCGTCG+AGG | 0.697705 | 1.1:+3619143 | MS.gene24408:CDS |
| AGCATTGCAAGAGAGCGAGT+CGG | 0.699995 | 1.1:+3620545 | MS.gene24408:CDS |
| ATGCATATAAACAACCTTTG+GGG | 0.701150 | 1.1:-3618607 | None:intergenic |
| GGAGAGCAGAACATGGACAA+CGG | 0.701482 | 1.1:+3620859 | MS.gene24408:CDS |
| GGAGTACAGGAAAAGATCGG+AGG | 0.701685 | 1.1:+3619339 | MS.gene24408:CDS |
| TGCCATTACAGAGTTAACAT+CGG | 0.702576 | 1.1:+3619588 | MS.gene24408:CDS |
| GAGTTGCAGATTGACCCCAA+AGG | 0.717473 | 1.1:+3618593 | MS.gene24408:CDS |
| TATTGCCGAAGATTCCAGTG+TGG | 0.782850 | 1.1:+3619522 | MS.gene24408:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTTTTGATAATCACA+TGG | + | chr1.1:3618894-3618913 | MS.gene24408:CDS | 20.0% |
| !!! | TCAAAAAATTTTGTTTGCTA+AGG | + | chr1.1:3619900-3619919 | MS.gene24408:CDS | 20.0% |
| ! | AAGAAAATTGCTGAAAATAG+AGG | + | chr1.1:3619042-3619061 | MS.gene24408:CDS | 25.0% |
| ! | GTGATTATCAAAAAAACTAC+CGG | - | chr1.1:3618893-3618912 | None:intergenic | 25.0% |
| ! | TGAAACAATCGAAATTGAAA+CGG | - | chr1.1:3619252-3619271 | None:intergenic | 25.0% |
| !! | ATTATATCGGTATTTTCTTG+AGG | - | chr1.1:3618209-3618228 | None:intergenic | 25.0% |
| !! | TTATATCGGTATTTTCTTGA+GGG | - | chr1.1:3618208-3618227 | None:intergenic | 25.0% |
| !!! | TTCTGAGGTAAATTACTTAA+AGG | + | chr1.1:3620134-3620153 | MS.gene24408:CDS | 25.0% |
| AACCAGAACATAAATCATAG+TGG | + | chr1.1:3620915-3620934 | MS.gene24408:CDS | 30.0% | |
| ACAAAGAAATAGTTGCTAGA+AGG | + | chr1.1:3620757-3620776 | MS.gene24408:CDS | 30.0% | |
| AGATCAAGATTCTCTCAATT+GGG | + | chr1.1:3619834-3619853 | MS.gene24408:CDS | 30.0% | |
| ATCAAATGGTGTGATACTAT+CGG | + | chr1.1:3620596-3620615 | MS.gene24408:CDS | 30.0% | |
| ATGCATATAAACAACCTTTG+GGG | - | chr1.1:3618610-3618629 | None:intergenic | 30.0% | |
| CAAAGAAATAGTTGCTAGAA+GGG | + | chr1.1:3620758-3620777 | MS.gene24408:CDS | 30.0% | |
| CATGAAGAAGTTAAGTATTC+AGG | - | chr1.1:3619211-3619230 | None:intergenic | 30.0% | |
| CATGCATATAAACAACCTTT+GGG | - | chr1.1:3618611-3618630 | None:intergenic | 30.0% | |
| CGATGTTGATCATAATCATA+TGG | + | chr1.1:3618541-3618560 | MS.gene24408:CDS | 30.0% | |
| GAATGATCACAAAGAACTAA+AGG | + | chr1.1:3618954-3618973 | MS.gene24408:CDS | 30.0% | |
| TAAATTACTTGCAGCTCAAA+AGG | + | chr1.1:3620473-3620492 | MS.gene24408:CDS | 30.0% | |
| TACCACTATGATTTATGTTC+TGG | - | chr1.1:3620920-3620939 | None:intergenic | 30.0% | |
| TAGAGCAAGAATTAAGAAAG+TGG | + | chr1.1:3620838-3620857 | MS.gene24408:CDS | 30.0% | |
| TGAGGTAAATTACTTAAAGG+TGG | + | chr1.1:3620137-3620156 | MS.gene24408:CDS | 30.0% | |
| TGATAATCACATGGATCTAA+CGG | + | chr1.1:3618903-3618922 | MS.gene24408:CDS | 30.0% | |
| TGATATTGTGAACATGCATA+AGG | + | chr1.1:3618855-3618874 | MS.gene24408:CDS | 30.0% | |
| TTTGAGCAAAACACAAAGAA+AGG | - | chr1.1:3619184-3619203 | None:intergenic | 30.0% | |
| ! | ATTTGGTTCAACATTTCTTG+AGG | - | chr1.1:3618171-3618190 | None:intergenic | 30.0% |
| ! | GCAATTTTCTTCTCATTTGT+AGG | - | chr1.1:3619033-3619052 | None:intergenic | 30.0% |
| ! | GTTTGACTTTGATTCCATAT+AGG | - | chr1.1:3619989-3620008 | None:intergenic | 30.0% |
| ! | TAAAGCTTCAAGTTCAGAAT+CGG | - | chr1.1:3618480-3618499 | None:intergenic | 30.0% |
| ! | TATATCGGTATTTTCTTGAG+GGG | - | chr1.1:3618207-3618226 | None:intergenic | 30.0% |
| ! | TCATGAACTGTTTCTTCTTT+CGG | - | chr1.1:3618425-3618444 | None:intergenic | 30.0% |
| ! | TTTATCATCTAGTGAGTTGA+TGG | - | chr1.1:3618270-3618289 | None:intergenic | 30.0% |
| !! | GCTTCTTTAGTTGATGAAAA+AGG | + | chr1.1:3619646-3619665 | MS.gene24408:CDS | 30.0% |
| !! | GCTTTAGAAGATATACAAGA+TGG | + | chr1.1:3618494-3618513 | MS.gene24408:CDS | 30.0% |
| !! | TACTTCTTCAAGTTCCTTTT+TGG | - | chr1.1:3620091-3620110 | None:intergenic | 30.0% |
| !! | TACTTGGACTTTTTCTTGTT+CGG | - | chr1.1:3619368-3619387 | None:intergenic | 30.0% |
| !! | TATTGCTTTTGTTCAGATGA+AGG | + | chr1.1:3620287-3620306 | MS.gene24408:CDS | 30.0% |
| !!! | TGTTCTGGTTTACTACATTT+TGG | - | chr1.1:3620905-3620924 | None:intergenic | 30.0% |
| AAAATTGTACGAGGAGATTC+CGG | + | chr1.1:3619318-3619337 | MS.gene24408:CDS | 35.0% | |
| AACTTCATTCAACTTCTCCA+TGG | - | chr1.1:3620736-3620755 | None:intergenic | 35.0% | |
| AAGATTGAGATATACCTCGA+CGG | - | chr1.1:3619160-3619179 | None:intergenic | 35.0% | |
| AATGAAGTGGATCCATCAAA+TGG | + | chr1.1:3620582-3620601 | MS.gene24408:CDS | 35.0% | |
| ACAGCTTGAAAAATTGTACG+AGG | + | chr1.1:3619309-3619328 | MS.gene24408:CDS | 35.0% | |
| AGAAAAAGTCCAAGTACTTC+AGG | + | chr1.1:3619372-3619391 | MS.gene24408:CDS | 35.0% | |
| AGCTGAGTTAAATGCCTATA+TGG | + | chr1.1:3619972-3619991 | MS.gene24408:CDS | 35.0% | |
| ATTGTGAACATGCATAAGGA+TGG | + | chr1.1:3618859-3618878 | MS.gene24408:CDS | 35.0% | |
| CGAGCTGAACAAAACTAAAT+CGG | + | chr1.1:3620263-3620282 | MS.gene24408:CDS | 35.0% | |
| GAATCAAAGTCAAACCAAGA+AGG | + | chr1.1:3619994-3620013 | MS.gene24408:CDS | 35.0% | |
| GAGATCAAGATTCTCTCAAT+TGG | + | chr1.1:3619833-3619852 | MS.gene24408:CDS | 35.0% | |
| GATAGTATCACACCATTTGA+TGG | - | chr1.1:3620597-3620616 | None:intergenic | 35.0% | |
| GCAAAGAACATAAAAAGTCG+CGG | - | chr1.1:3621077-3621096 | None:intergenic | 35.0% | |
| GCATGCATATAAACAACCTT+TGG | - | chr1.1:3618612-3618631 | None:intergenic | 35.0% | |
| GCTTCTGATGAACAATCTAT+AGG | + | chr1.1:3618359-3618378 | MS.gene24408:CDS | 35.0% | |
| GGAATCATTGAAGATTGCTA+TGG | + | chr1.1:3620779-3620798 | MS.gene24408:CDS | 35.0% | |
| GGACTTGAAAAGTAATGTAC+AGG | - | chr1.1:3620972-3620991 | None:intergenic | 35.0% | |
| GGTCATGCAAACAATGAAAA+TGG | + | chr1.1:3621002-3621021 | MS.gene24408:CDS | 35.0% | |
| GGTTGGAGCTGTTATTATAT+CGG | - | chr1.1:3618222-3618241 | None:intergenic | 35.0% | |
| GTTCAGATGAAGGAAAAAGA+AGG | + | chr1.1:3620297-3620316 | MS.gene24408:CDS | 35.0% | |
| TAGAAGCAACAACAATGAAG+TGG | + | chr1.1:3620569-3620588 | MS.gene24408:CDS | 35.0% | |
| TGCCATTACAGAGTTAACAT+CGG | + | chr1.1:3619588-3619607 | MS.gene24408:CDS | 35.0% | |
| TGCTATGGATAAATCTGAGA+AGG | + | chr1.1:3620794-3620813 | MS.gene24408:CDS | 35.0% | |
| TTCGATGGAAGAGTCATTAT+CGG | - | chr1.1:3618243-3618262 | None:intergenic | 35.0% | |
| TTTGCATGACCATAAGACTT+GGG | - | chr1.1:3620993-3621012 | None:intergenic | 35.0% | |
| ! | ACATCAGGAATCTTGATTTG+AGG | - | chr1.1:3618988-3619007 | None:intergenic | 35.0% |
| ! | AGATTCCAAAGACTCTTTTG+TGG | - | chr1.1:3619758-3619777 | None:intergenic | 35.0% |
| ! | GTTGAGGCTAAATTTTCTTG+AGG | - | chr1.1:3618757-3618776 | None:intergenic | 35.0% |
| ! | TATTTGATTTCAGCGAAGCA+AGG | + | chr1.1:3619276-3619295 | MS.gene24408:intron | 35.0% |
| !! | AAGGAAGCTGTTTCTAAGTT+TGG | + | chr1.1:3619099-3619118 | MS.gene24408:CDS | 35.0% |
| !! | TACATTTTGGCCTATTTCAC+CGG | - | chr1.1:3620892-3620911 | None:intergenic | 35.0% |
| !! | TTCTGAGATCGATATAGCTA+AGG | + | chr1.1:3620695-3620714 | MS.gene24408:CDS | 35.0% |
| !! | TTCTTTCCACTTTTCACATC+CGG | - | chr1.1:3621035-3621054 | None:intergenic | 35.0% |
| !! | TTGAGGAGCATCAATAACTT+CGG | - | chr1.1:3618740-3618759 | None:intergenic | 35.0% |
| !!! | TTTTCAAGTCCCAAGTCTTA+TGG | + | chr1.1:3620981-3621000 | MS.gene24408:CDS | 35.0% |
| AAAGCACATCCAACTCATTC+AGG | + | chr1.1:3621104-3621123 | MS.gene24408:CDS | 40.0% | |
| AAAGCTCAGAGTGGAAGAAA+TGG | + | chr1.1:3619492-3619511 | MS.gene24408:CDS | 40.0% | |
| AACTAAAACTGAGCCTAGAG+AGG | + | chr1.1:3619425-3619444 | MS.gene24408:CDS | 40.0% | |
| AAGATTCCTGATGTTGCTGA+TGG | + | chr1.1:3618994-3619013 | MS.gene24408:CDS | 40.0% | |
| AAGATTCTCTCAATTGGGAG+AGG | + | chr1.1:3619839-3619858 | MS.gene24408:CDS | 40.0% | |
| AAGCACATCCAACTCATTCA+GGG | + | chr1.1:3621105-3621124 | MS.gene24408:CDS | 40.0% | |
| AAGGCAAGGGAAGGAAAATT+AGG | + | chr1.1:3620813-3620832 | MS.gene24408:CDS | 40.0% | |
| ACACAGAATAGGAACAGTCA+TGG | + | chr1.1:3619807-3619826 | MS.gene24408:CDS | 40.0% | |
| ACTAAAACTGAGCCTAGAGA+GGG | + | chr1.1:3619426-3619445 | MS.gene24408:CDS | 40.0% | |
| AGATTCTCTCAATTGGGAGA+GGG | + | chr1.1:3619840-3619859 | MS.gene24408:CDS | 40.0% | |
| AGCCAATTCGAGAATTGCAA+CGG | + | chr1.1:3620668-3620687 | MS.gene24408:CDS | 40.0% | |
| AGTTTGGAGGAATTGTCGAT+TGG | + | chr1.1:3619115-3619134 | MS.gene24408:CDS | 40.0% | |
| ATCGAAGCAAGTGGAAAAGA+CGG | + | chr1.1:3619705-3619724 | MS.gene24408:CDS | 40.0% | |
| ATCTGCACATTCTGCACATA+TGG | + | chr1.1:3619774-3619793 | MS.gene24408:CDS | 40.0% | |
| ATGGAAGAGTCATTATCGGT+TGG | - | chr1.1:3618239-3618258 | None:intergenic | 40.0% | |
| CAACTCTTCTGTTACAGAAG+AGG | - | chr1.1:3618579-3618598 | None:intergenic | 40.0% | |
| CAATGAAAATGGATCCTCAC+CGG | + | chr1.1:3621013-3621032 | MS.gene24408:CDS | 40.0% | |
| CACCGATGTTAACTCTGTAA+TGG | - | chr1.1:3619593-3619612 | None:intergenic | 40.0% | |
| CATAGAGAAAGCTACTTCTG+AGG | + | chr1.1:3620119-3620138 | MS.gene24408:CDS | 40.0% | |
| GAAACAGAAGAAAACCACCT+AGG | + | chr1.1:3618443-3618462 | MS.gene24408:CDS | 40.0% | |
| GAAGCAGAAGAACACAGAAT+AGG | + | chr1.1:3619796-3619815 | MS.gene24408:CDS | 40.0% | |
| GATTGCCACAAAAGAGTCTT+TGG | + | chr1.1:3619750-3619769 | MS.gene24408:CDS | 40.0% | |
| GCTTCAACTGTTACTGCTAA+CGG | + | chr1.1:3618518-3618537 | MS.gene24408:CDS | 40.0% | |
| GGAGACTGAATTGAAAACCA+TGG | + | chr1.1:3620716-3620735 | MS.gene24408:CDS | 40.0% | |
| GGATAAATCTGAGAAGGCAA+GGG | + | chr1.1:3620800-3620819 | MS.gene24408:CDS | 40.0% | |
| GTTTGCATGACCATAAGACT+TGG | - | chr1.1:3620994-3621013 | None:intergenic | 40.0% | |
| TACATGAACTTCAGCATCTG+AGG | - | chr1.1:3618779-3618798 | None:intergenic | 40.0% | |
| TCAACATTTCTTGAGGAGGT+TGG | - | chr1.1:3618164-3618183 | None:intergenic | 40.0% | |
| TGGATAAATCTGAGAAGGCA+AGG | + | chr1.1:3620799-3620818 | MS.gene24408:CDS | 40.0% | |
| TGGTTCAACATTTCTTGAGG+AGG | - | chr1.1:3618168-3618187 | None:intergenic | 40.0% | |
| TGTAACAGAACAAAGTCACC+AGG | + | chr1.1:3618795-3618814 | MS.gene24408:CDS | 40.0% | |
| TGTTCAGAATCTGTAACCAC+AGG | - | chr1.1:3618823-3618842 | None:intergenic | 40.0% | |
| ! | GCATCAATAACTTCGGTTTG+AGG | - | chr1.1:3618733-3618752 | None:intergenic | 40.0% |
| ! | TGAAGTGCTTAGGAGAGTAA+AGG | + | chr1.1:3620407-3620426 | MS.gene24408:CDS | 40.0% |
| !! | CATAAGGATGGTGGTTTTAC+CGG | + | chr1.1:3618871-3618890 | MS.gene24408:CDS | 40.0% |
| !! | GAAGCTGTTTCTAAGTTTGG+AGG | + | chr1.1:3619102-3619121 | MS.gene24408:CDS | 40.0% |
| AAATCTGAGAAGGCAAGGGA+AGG | + | chr1.1:3620804-3620823 | MS.gene24408:CDS | 45.0% | |
| AACCAAGAAGGAGACGATGA+TGG | + | chr1.1:3620006-3620025 | MS.gene24408:CDS | 45.0% | |
| AAGCTGCAAGAGCTTCTGAA+AGG | + | chr1.1:3620502-3620521 | MS.gene24408:CDS | 45.0% | |
| AAGTTCAGAATCGGCAGCTA+TGG | - | chr1.1:3618471-3618490 | None:intergenic | 45.0% | |
| AATCATCGCTTGCCTCGATT+AGG | + | chr1.1:3620196-3620215 | MS.gene24408:CDS | 45.0% | |
| AATCTGTAACCACAGGTTCC+TGG | - | chr1.1:3618816-3618835 | None:intergenic | 45.0% | |
| AATGCAAGCAGCAGTTGAGT+CGG | + | chr1.1:3620065-3620084 | MS.gene24408:CDS | 45.0% | |
| ACACTTCCATCAGCAACATC+AGG | - | chr1.1:3619003-3619022 | None:intergenic | 45.0% | |
| AGAAAGTGGAGAGCAGAACA+TGG | + | chr1.1:3620852-3620871 | MS.gene24408:CDS | 45.0% | |
| AGAACTTGCAAAGCTCAGAG+TGG | + | chr1.1:3619483-3619502 | MS.gene24408:CDS | 45.0% | |
| AGAGTGGAAGAAATGGAGCA+AGG | + | chr1.1:3619499-3619518 | MS.gene24408:CDS | 45.0% | |
| AGCTCCATTCGAATCTGTCA+AGG | + | chr1.1:3619080-3619099 | MS.gene24408:CDS | 45.0% | |
| AGTGCTTAGGAGAGTAAAGG+AGG | + | chr1.1:3620410-3620429 | MS.gene24408:CDS | 45.0% | |
| GACGCTTCTTGAAGCTTCTT+TGG | - | chr1.1:3620345-3620364 | None:intergenic | 45.0% | |
| GATAGACGCAACTGTAATCG+AGG | - | chr1.1:3620238-3620257 | None:intergenic | 45.0% | |
| GATCTAACGGCTTCATCTTC+TGG | + | chr1.1:3618916-3618935 | MS.gene24408:CDS | 45.0% | |
| GATTAGGCAAAGAGAGGGAA+TGG | + | chr1.1:3620212-3620231 | MS.gene24408:CDS | 45.0% | |
| GCTTCCTTGACAGATTCGAA+TGG | - | chr1.1:3619087-3619106 | None:intergenic | 45.0% | |
| GTGAACATGCATAAGGATGG+TGG | + | chr1.1:3618862-3618881 | MS.gene24408:CDS | 45.0% | |
| TATTGCCGAAGATTCCAGTG+TGG | + | chr1.1:3619522-3619541 | MS.gene24408:CDS | 45.0% | |
| TCCGGAGTACAGGAAAAGAT+CGG | + | chr1.1:3619336-3619355 | MS.gene24408:CDS | 45.0% | |
| TGCCGTTGCAATTCTCGAAT+TGG | - | chr1.1:3620673-3620692 | None:intergenic | 45.0% | |
| TGGAGTCTCAAAAGAGCAAC+TGG | + | chr1.1:3620026-3620045 | MS.gene24408:CDS | 45.0% | |
| TTGCCTTGCTTGATGCTCTT+CGG | - | chr1.1:3619458-3619477 | None:intergenic | 45.0% | |
| ! | AACTTCAGCATCTGAGGTTG+AGG | - | chr1.1:3618773-3618792 | None:intergenic | 45.0% |
| ! | GAGAAGCTTGTGAAGTGCTT+AGG | + | chr1.1:3620397-3620416 | MS.gene24408:CDS | 45.0% |
| ! | TCCGATCTTTTCCTGTACTC+CGG | - | chr1.1:3619340-3619359 | None:intergenic | 45.0% |
| ! | TGCAAGAGCTTCTGAAAGGT+TGG | + | chr1.1:3620506-3620525 | MS.gene24408:CDS | 45.0% |
| ! | TGGAGGAATTGTCGATTGGA+AGG | + | chr1.1:3619119-3619138 | MS.gene24408:CDS | 45.0% |
| ! | TGTCAAGCTCCTGAAGTACT+TGG | - | chr1.1:3619384-3619403 | None:intergenic | 45.0% |
| !! | AAACCGAAGAGCATCAAGCA+AGG | + | chr1.1:3619452-3619471 | MS.gene24408:CDS | 45.0% |
| !! | TGAGTTGATGGAAGCTTCGA+TGG | - | chr1.1:3618258-3618277 | None:intergenic | 45.0% |
| AACTCGAGGTTGCCAAAGCA+AGG | + | chr1.1:3619557-3619576 | MS.gene24408:CDS | 50.0% | |
| ACAAAGTCACCAGGAACCTG+TGG | + | chr1.1:3618804-3618823 | MS.gene24408:CDS | 50.0% | |
| AGCAGTTGAGTCGGCCAAAA+AGG | + | chr1.1:3620074-3620093 | MS.gene24408:CDS | 50.0% | |
| AGCATTGCAAGAGAGCGAGT+CGG | + | chr1.1:3620545-3620564 | MS.gene24408:CDS | 50.0% | |
| AGCGTCTGAAGAGGCGAATA+TGG | + | chr1.1:3620359-3620378 | MS.gene24408:CDS | 50.0% | |
| AGCTTCTCGAGCAAGCAAGT+TGG | - | chr1.1:3620385-3620404 | None:intergenic | 50.0% | |
| CATGGACAACGGAGAAAAGC+CGG | + | chr1.1:3620870-3620889 | MS.gene24408:CDS | 50.0% | |
| CATTGTACTAGCACCAGCCT+TGG | - | chr1.1:3620448-3620467 | None:intergenic | 50.0% | |
| CGAGTTAGATTCGTTGCGTG+TGG | + | chr1.1:3619618-3619637 | MS.gene24408:CDS | 50.0% | |
| CGATGCAGCAACAGCATCTT+CGG | - | chr1.1:3619689-3619708 | None:intergenic | 50.0% | |
| CGGAGAAAAGCCGGTGAAAT+AGG | + | chr1.1:3620879-3620898 | MS.gene24408:CDS | 50.0% | |
| CTCCATCATCGTCTCCTTCT+TGG | - | chr1.1:3620011-3620030 | None:intergenic | 50.0% | |
| GAAGCTTCTTTGGCAGCTCA+AGG | - | chr1.1:3620335-3620354 | None:intergenic | 50.0% | |
| GAGTTGCAGATTGACCCCAA+AGG | + | chr1.1:3618593-3618612 | MS.gene24408:CDS | 50.0% | |
| GCCTCGATTAGGCAAAGAGA+GGG | + | chr1.1:3620207-3620226 | MS.gene24408:CDS | 50.0% | |
| GGAGAGCAGAACATGGACAA+CGG | + | chr1.1:3620859-3620878 | MS.gene24408:CDS | 50.0% | |
| GGAGTACAGGAAAAGATCGG+AGG | + | chr1.1:3619339-3619358 | MS.gene24408:CDS | 50.0% | |
| GGCACTCGTATACCTTGCTT+TGG | - | chr1.1:3619572-3619591 | None:intergenic | 50.0% | |
| TCATCGAATGATAGCCGTCG+AGG | + | chr1.1:3619143-3619162 | MS.gene24408:CDS | 50.0% | |
| TCCCTCTCTTTGCCTAATCG+AGG | - | chr1.1:3620211-3620230 | None:intergenic | 50.0% | |
| TCCTCACCGGATGTGAAAAG+TGG | + | chr1.1:3621026-3621045 | MS.gene24408:CDS | 50.0% | |
| TGCCTCGATTAGGCAAAGAG+AGG | + | chr1.1:3620206-3620225 | MS.gene24408:CDS | 50.0% | |
| TGTTGCTGCATCGAAGCAAG+TGG | + | chr1.1:3619696-3619715 | MS.gene24408:CDS | 50.0% | |
| ! | GGGGCATCTGCTAGTGAATT+TGG | - | chr1.1:3618188-3618207 | None:intergenic | 50.0% |
| !! | GCTTCAAGAAGCGTCTGAAG+AGG | + | chr1.1:3620350-3620369 | MS.gene24408:CDS | 50.0% |
| !! | TCCACTTTTCACATCCGGTG+AGG | - | chr1.1:3621030-3621049 | None:intergenic | 50.0% |
| AATCGGCAGCTATGGCTCCT+AGG | - | chr1.1:3618463-3618482 | None:intergenic | 55.0% | |
| ACGAGGAGATTCCGGAGTAC+AGG | + | chr1.1:3619326-3619345 | MS.gene24408:CDS | 55.0% | |
| AGATTCCAGTGTGGCAGCCA+AGG | + | chr1.1:3619531-3619550 | MS.gene24408:CDS | 55.0% | |
| GAAGCAGAACAAGCCAAGGC+TGG | + | chr1.1:3620432-3620451 | MS.gene24408:CDS | 55.0% | |
| GGAGGAAGCAGAACAAGCCA+AGG | + | chr1.1:3620428-3620447 | MS.gene24408:CDS | 55.0% | |
| GGCTGCCACACTGGAATCTT+CGG | - | chr1.1:3619530-3619549 | None:intergenic | 55.0% | |
| ! | CTTCGGTTTGTGCCCTCTCT+AGG | - | chr1.1:3619441-3619460 | None:intergenic | 55.0% |
| CGGCAGCTATGGCTCCTAGG+TGG | - | chr1.1:3618460-3618479 | None:intergenic | 65.0% | |
| TTGCGCCTTGGCTGCCACAC+TGG | - | chr1.1:3619539-3619558 | None:intergenic | 65.0% | |
| ! | GGCAACCTCGAGTTGCGCCT+TGG | - | chr1.1:3619551-3619570 | None:intergenic | 65.0% |
| GGCAGCCAAGGCGCAACTCG+AGG | + | chr1.1:3619543-3619562 | MS.gene24408:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 3618140 | 3621130 | 3618140 | ID=MS.gene24408 |
| chr1.1 | mRNA | 3618140 | 3621130 | 3618140 | ID=MS.gene24408.t1;Parent=MS.gene24408 |
| chr1.1 | exon | 3618140 | 3618614 | 3618140 | ID=MS.gene24408.t1.exon1;Parent=MS.gene24408.t1 |
| chr1.1 | CDS | 3618140 | 3618614 | 3618140 | ID=cds.MS.gene24408.t1;Parent=MS.gene24408.t1 |
| chr1.1 | exon | 3618725 | 3619164 | 3618725 | ID=MS.gene24408.t1.exon2;Parent=MS.gene24408.t1 |
| chr1.1 | CDS | 3618725 | 3619164 | 3618725 | ID=cds.MS.gene24408.t1;Parent=MS.gene24408.t1 |
| chr1.1 | exon | 3619289 | 3621130 | 3619289 | ID=MS.gene24408.t1.exon3;Parent=MS.gene24408.t1 |
| chr1.1 | CDS | 3619289 | 3621130 | 3619289 | ID=cds.MS.gene24408.t1;Parent=MS.gene24408.t1 |
| Gene Sequence |
| Protein sequence |
