AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57009

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57009.t1 MTR_5g071550 99.208 379 2 1 1 379 1 378 0.0 773
MS.gene57009.t1 MTR_5g071550 97.898 333 6 1 1 333 1 332 0.0 666
MS.gene57009.t1 MTR_5g071550 97.059 272 7 1 1 272 1 271 0.0 537
MS.gene57009.t1 MTR_3g464650 73.810 294 75 2 88 379 25 318 1.14e-162 458
MS.gene57009.t1 MTR_3g464700 73.507 268 69 2 86 351 47 314 8.68e-147 419
MS.gene57009.t1 MTR_1g014640 40.392 255 139 4 125 375 78 323 1.18e-55 186
MS.gene57009.t1 MTR_1g013400 40.392 255 139 4 125 375 78 323 1.18e-55 186
MS.gene57009.t1 MTR_3g105730 39.608 255 141 4 125 375 13 258 1.79e-54 181
MS.gene57009.t1 MTR_3g105730 39.608 255 141 4 125 375 35 280 1.89e-54 182
MS.gene57009.t1 MTR_1g115570 39.062 256 137 7 124 375 97 337 1.10e-53 181
MS.gene57009.t1 MTR_3g091060 38.760 258 143 5 124 377 96 342 1.33e-50 174
MS.gene57009.t1 MTR_4g116420 36.704 267 133 7 132 373 93 348 1.44e-45 160
MS.gene57009.t1 MTR_5g063940 38.996 259 140 10 125 376 35 282 6.84e-45 156
MS.gene57009.t1 MTR_5g063940 39.837 246 131 9 137 376 1 235 2.13e-44 153
MS.gene57009.t1 MTR_4g125810 38.583 254 122 6 155 376 253 504 4.40e-44 159
MS.gene57009.t1 MTR_3g074610 37.984 258 144 8 125 376 35 282 1.68e-43 152
MS.gene57009.t1 MTR_2g078760 39.147 258 141 8 125 376 7 254 2.32e-43 151
MS.gene57009.t1 MTR_2g078760 39.147 258 141 8 125 376 86 333 8.01e-43 152
MS.gene57009.t1 MTR_4g094208 37.931 261 140 11 125 376 30 277 1.57e-42 150
MS.gene57009.t1 MTR_8g463130 38.521 257 142 7 125 375 7 253 2.60e-41 146
MS.gene57009.t1 MTR_8g463130 38.521 257 142 7 125 375 35 281 4.59e-41 146
MS.gene57009.t1 MTR_2g008850 38.710 248 131 8 137 376 1 235 6.37e-40 142
MS.gene57009.t1 MTR_3g068200 32.277 347 186 9 65 377 46 377 2.41e-39 144
MS.gene57009.t1 MTR_2g008850 38.710 248 131 8 137 376 47 281 5.30e-39 140
MS.gene57009.t1 MTR_3g107880 36.226 265 135 7 132 373 89 342 1.02e-38 142
MS.gene57009.t1 MTR_3g107880 36.226 265 135 7 132 373 32 285 1.02e-38 141
MS.gene57009.t1 MTR_3g107880 36.226 265 135 7 132 373 90 343 1.05e-38 142
MS.gene57009.t1 MTR_1g050520 33.459 266 155 4 125 376 388 645 1.08e-38 146
MS.gene57009.t1 MTR_2g040500 32.268 313 140 9 132 376 228 536 2.06e-37 142
MS.gene57009.t1 MTR_2g033000 33.333 249 143 5 144 375 89 331 4.84e-37 137
MS.gene57009.t1 MTR_3g104710 34.351 262 135 7 150 376 281 540 3.35e-36 139
MS.gene57009.t1 MTR_5g024340 33.333 261 149 7 130 373 91 343 1.17e-35 134
MS.gene57009.t1 MTR_4g094542 38.589 241 134 8 137 373 132 362 1.35e-35 134
MS.gene57009.t1 MTR_1g015110 32.219 329 157 10 108 376 222 544 3.71e-35 135
MS.gene57009.t1 MTR_5g080680 36.975 238 130 5 125 345 102 336 5.61e-35 132
MS.gene57009.t1 MTR_1g028300 37.405 262 146 6 132 376 120 380 1.24e-34 132
MS.gene57009.t1 MTR_1g086350 31.502 273 156 7 128 375 83 349 1.41e-33 129
MS.gene57009.t1 MTR_1g086350 31.502 273 156 7 128 375 67 333 1.47e-33 128
MS.gene57009.t1 MTR_2g078760 40.476 210 114 7 125 328 86 290 1.85e-33 126
MS.gene57009.t1 MTR_4g123080 32.218 239 139 6 154 375 112 344 1.97e-33 128
MS.gene57009.t1 MTR_4g123080 32.218 239 139 6 154 375 94 326 3.20e-33 127
MS.gene57009.t1 MTR_8g102550 34.855 241 139 5 153 376 150 389 3.98e-32 125
MS.gene57009.t1 MTR_7g100240 34.529 223 104 6 155 336 71 292 6.72e-32 124
MS.gene57009.t1 MTR_1g014190 32.246 276 115 9 125 338 62 327 2.67e-31 122
MS.gene57009.t1 MTR_1g014190 32.246 276 115 9 125 338 24 289 4.56e-31 121
MS.gene57009.t1 MTR_1g086350 32.353 238 138 7 155 375 16 247 1.21e-30 119
MS.gene57009.t1 MTR_3g105880 31.295 278 120 9 125 340 24 292 4.34e-30 119
MS.gene57009.t1 MTR_3g105880 31.295 278 120 9 125 340 24 292 7.86e-30 117
MS.gene57009.t1 MTR_3g491830 30.479 292 147 10 131 375 67 349 1.18e-28 115
MS.gene57009.t1 MTR_4g007440 30.147 272 120 8 125 335 24 286 3.45e-28 114
MS.gene57009.t1 MTR_1g116260 30.769 286 140 10 146 375 71 354 7.32e-28 113
MS.gene57009.t1 MTR_1g067210 29.391 279 139 9 155 377 76 352 9.23e-28 112
MS.gene57009.t1 MTR_5g009370 33.212 274 150 7 132 375 60 330 2.62e-27 110
MS.gene57009.t1 MTR_7g090530 34.836 244 114 8 135 337 52 291 8.13e-27 111
MS.gene57009.t1 MTR_1g112840 30.804 224 113 6 155 337 81 303 2.77e-25 106
MS.gene57009.t1 MTR_3g032700 32.922 243 118 9 137 338 53 291 3.60e-25 106
MS.gene57009.t1 MTR_3g105730 39.860 143 80 2 132 270 42 182 4.53e-25 102
MS.gene57009.t1 MTR_3g032660 32.510 243 119 9 137 338 53 291 1.08e-24 105
MS.gene57009.t1 MTR_0015s0140 29.032 279 141 9 154 377 78 354 4.10e-24 102
MS.gene57009.t1 MTR_2g020970 29.470 302 152 13 125 376 52 342 5.84e-24 102
MS.gene57009.t1 MTR_2g020970 29.470 302 152 13 125 376 52 342 5.96e-24 102
MS.gene57009.t1 MTR_4g118340 28.521 284 147 11 138 376 69 341 6.51e-24 102
MS.gene57009.t1 MTR_1g106855 30.131 229 114 6 155 339 61 287 7.81e-24 100
MS.gene57009.t1 MTR_7g090550 31.915 282 133 11 135 368 53 323 1.03e-23 102
MS.gene57009.t1 MTR_7g112430 29.960 247 144 8 149 375 60 297 1.63e-23 101
MS.gene57009.t1 MTR_7g081020 30.357 224 114 8 155 337 76 298 2.45e-23 99.4
MS.gene57009.t1 MTR_1g106855 30.131 229 114 6 155 339 61 287 4.72e-23 99.8
MS.gene57009.t1 MTR_7g081020 30.357 224 114 8 155 337 76 298 5.10e-23 99.8
MS.gene57009.t1 MTR_6g081850 29.237 236 137 7 131 339 51 283 3.98e-22 96.3
MS.gene57009.t1 MTR_8g074930 29.018 224 117 6 155 337 79 301 1.10e-21 95.9
MS.gene57009.t1 MTR_1g083750 27.372 274 167 10 125 375 33 297 1.16e-20 93.2
MS.gene57009.t1 MTR_1g110210 27.236 246 146 8 151 375 64 297 1.74e-20 91.7
MS.gene57009.t1 MTR_2g033910 28.889 225 119 6 155 338 75 299 2.57e-20 91.7
MS.gene57009.t1 MTR_4g013295 29.020 255 135 9 126 335 49 302 8.62e-20 90.1
MS.gene57009.t1 MTR_5g080680 34.783 184 101 4 125 291 102 283 9.30e-20 88.6
MS.gene57009.t1 MTR_7g029240 31.048 248 144 10 149 375 60 301 1.97e-19 89.7
MS.gene57009.t1 MTR_0015s0140 29.808 208 102 5 214 377 93 300 3.08e-19 88.2
MS.gene57009.t1 MTR_1g019760 28.571 245 148 10 149 375 59 294 3.60e-19 89.0
MS.gene57009.t1 MTR_3g101540 27.984 243 152 9 149 375 60 295 4.28e-19 88.6
MS.gene57009.t1 MTR_3g101540 27.984 243 152 9 149 375 60 295 4.71e-19 88.6
MS.gene57009.t1 MTR_1g019760 28.395 243 151 9 149 375 59 294 6.60e-19 88.2
MS.gene57009.t1 MTR_2g078760 36.875 160 92 5 125 279 86 241 2.04e-18 84.3
MS.gene57009.t1 MTR_4g094208 37.013 154 82 9 125 270 30 176 8.30e-17 79.0
MS.gene57009.t1 MTR_8g017240 29.796 245 136 8 126 335 57 300 1.05e-16 81.3
MS.gene57009.t1 MTR_8g074930 29.032 186 91 5 193 337 4 189 1.69e-16 79.3
MS.gene57009.t1 MTR_7g070510 27.863 262 136 10 126 335 63 323 1.96e-16 80.9
MS.gene57009.t1 MTR_4g113480 31.698 265 129 14 137 363 60 310 2.10e-16 81.3
MS.gene57009.t1 MTR_1g083690 28.188 298 171 12 118 373 52 348 4.33e-16 79.0
MS.gene57009.t1 MTR_6g087000 28.253 269 140 10 152 375 121 381 7.16e-16 79.7
MS.gene57009.t1 MTR_4g120410 27.652 264 143 11 117 335 51 311 7.19e-16 78.6
MS.gene57009.t1 MTR_7g112490 27.508 309 172 13 118 375 54 361 1.03e-15 78.2
MS.gene57009.t1 MTR_6g087000 28.253 269 140 10 152 375 121 381 1.12e-15 79.3
MS.gene57009.t1 MTR_7g112490 27.508 309 172 13 118 375 72 379 1.75e-15 77.8
MS.gene57009.t1 MTR_2g435550 25.436 287 171 12 127 371 64 349 3.40e-15 76.6
MS.gene57009.t1 MTR_2g435550 25.436 287 171 12 127 371 50 335 4.55e-15 75.9
MS.gene57009.t1 MTR_3g032590 31.088 193 92 7 187 338 105 297 4.85e-15 76.6
MS.gene57009.t1 MTR_1g083750 28.718 195 117 6 194 375 20 205 1.40e-14 74.3
MS.gene57009.t1 MTR_7g021530 26.937 271 135 10 126 335 59 327 2.11e-14 74.3
MS.gene57009.t1 MTR_7g021530 26.937 271 135 10 126 335 100 368 3.55e-14 73.9
MS.gene57009.t1 MTR_1g016620 30.556 252 131 11 126 336 40 288 7.49e-14 72.4
MS.gene57009.t1 MTR_2g435550 25.000 276 165 11 127 361 64 338 7.98e-14 72.8
MS.gene57009.t1 MTR_1g071370 24.632 272 142 9 162 378 178 441 3.11e-13 71.6
MS.gene57009.t1 MTR_7g080170 25.899 278 137 10 126 335 67 343 3.32e-12 68.2
MS.gene57009.t1 MTR_7g080170 33.333 138 75 5 214 335 99 235 1.28e-11 65.9
MS.gene57009.t1 MTR_5g005810 27.037 270 166 13 132 378 313 574 4.85e-11 64.7
MS.gene57009.t1 MTR_1g075730 23.913 230 145 6 150 375 74 277 5.34e-11 63.2
MS.gene57009.t1 MTR_7g021530 29.756 205 114 9 160 336 76 278 9.25e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57009.t1 AT1G07160 62.564 390 121 7 1 377 1 378 5.92e-161 457
MS.gene57009.t1 AT2G30020 60.794 403 127 7 1 379 1 396 2.61e-157 448
MS.gene57009.t1 AT2G40180 60.952 315 109 6 77 379 77 389 8.61e-126 368
MS.gene57009.t1 AT1G67820 46.584 322 144 6 37 333 12 330 6.00e-86 268
MS.gene57009.t1 AT1G67820 47.386 306 129 6 37 333 12 294 1.42e-85 266
MS.gene57009.t1 AT4G08260 52.869 244 82 4 137 379 1 212 3.85e-78 239
MS.gene57009.t1 AT3G27140 49.378 241 69 3 137 376 1 189 1.47e-65 209
MS.gene57009.t1 AT2G05050 44.672 244 83 4 137 379 1 193 3.22e-58 188
MS.gene57009.t1 AT4G31750 40.392 255 139 4 125 375 34 279 1.54e-55 185
MS.gene57009.t1 AT4G31750 40.392 255 139 4 125 375 34 279 1.81e-55 185
MS.gene57009.t1 AT4G31750 40.392 255 139 4 125 375 34 279 1.81e-55 185
MS.gene57009.t1 AT5G10740 40.000 255 140 4 125 375 34 279 4.91e-55 185
MS.gene57009.t1 AT5G10740 40.000 255 140 4 125 375 34 279 4.91e-55 185
MS.gene57009.t1 AT5G53140 39.608 255 140 6 128 377 104 349 6.23e-55 186
MS.gene57009.t1 AT5G53140 39.608 255 140 6 128 377 104 349 6.23e-55 186
MS.gene57009.t1 AT5G24940 39.216 255 142 4 125 375 34 279 2.24e-54 186
MS.gene57009.t1 AT1G43900 38.996 259 138 7 124 376 125 369 1.22e-52 179
MS.gene57009.t1 AT4G28400 36.965 257 146 7 125 375 14 260 2.78e-44 154
MS.gene57009.t1 AT3G15260 41.633 245 128 7 137 376 55 289 3.29e-44 155
MS.gene57009.t1 AT3G15260 41.633 245 128 7 137 376 55 289 3.29e-44 155
MS.gene57009.t1 AT4G28400 36.965 257 146 7 125 375 36 282 3.78e-44 154
MS.gene57009.t1 AT1G78200 37.500 248 137 7 137 376 1 238 6.81e-43 150
MS.gene57009.t1 AT1G78200 37.500 248 137 7 137 376 1 238 6.81e-43 150
MS.gene57009.t1 AT1G78200 36.364 264 149 8 122 376 30 283 1.39e-42 150
MS.gene57009.t1 AT1G78200 36.364 264 149 8 122 376 30 283 1.39e-42 150
MS.gene57009.t1 AT1G78200 36.364 264 149 8 122 376 30 283 1.39e-42 150
MS.gene57009.t1 AT2G20630 36.327 245 141 6 137 376 45 279 3.72e-42 149
MS.gene57009.t1 AT2G20630 36.929 241 137 6 137 372 45 275 3.66e-41 147
MS.gene57009.t1 AT1G34750 38.224 259 142 9 124 376 36 282 5.40e-41 146
MS.gene57009.t1 AT1G34750 38.224 259 142 9 124 376 36 282 5.40e-41 146
MS.gene57009.t1 AT1G34750 38.224 259 142 9 124 376 36 282 5.40e-41 146
MS.gene57009.t1 AT5G51760 34.528 307 145 8 125 377 79 383 1.79e-40 147
MS.gene57009.t1 AT5G51760 34.528 307 145 8 125 377 109 413 3.15e-40 147
MS.gene57009.t1 AT2G25620 32.542 295 153 7 106 376 85 357 5.00e-40 146
MS.gene57009.t1 AT2G25620 32.542 295 153 7 106 376 85 357 5.00e-40 146
MS.gene57009.t1 AT2G29380 36.934 287 143 10 124 376 79 361 5.07e-40 145
MS.gene57009.t1 AT2G33700 34.866 261 145 6 130 373 90 342 1.01e-39 145
MS.gene57009.t1 AT5G57050 33.333 306 144 8 125 376 73 372 3.64e-39 144
MS.gene57009.t1 AT5G57050 33.987 306 142 9 125 376 113 412 4.00e-39 144
MS.gene57009.t1 AT4G26080 32.667 300 149 8 124 376 130 423 7.21e-39 144
MS.gene57009.t1 AT1G22280 34.601 263 152 10 125 376 34 287 1.34e-38 140
MS.gene57009.t1 AT1G22280 34.749 259 151 10 125 376 34 281 1.94e-37 137
MS.gene57009.t1 AT1G72770 34.962 266 128 6 155 376 238 502 3.75e-37 140
MS.gene57009.t1 AT1G72770 34.962 266 128 6 155 376 238 502 3.75e-37 140
MS.gene57009.t1 AT1G72770 34.962 266 128 6 155 376 238 502 3.75e-37 140
MS.gene57009.t1 AT1G17550 35.206 267 127 7 155 376 237 502 4.14e-37 140
MS.gene57009.t1 AT1G17550 35.206 267 127 7 155 376 237 502 4.14e-37 140
MS.gene57009.t1 AT2G40860 33.077 260 149 5 132 376 400 649 5.84e-37 142
MS.gene57009.t1 AT2G40860 33.077 260 149 5 132 376 302 551 6.55e-37 140
MS.gene57009.t1 AT3G51470 32.184 261 151 8 128 373 76 325 1.19e-34 131
MS.gene57009.t1 AT3G51470 31.801 261 152 7 128 373 32 281 1.25e-34 130
MS.gene57009.t1 AT1G48040 34.211 266 143 7 134 373 88 347 1.51e-34 131
MS.gene57009.t1 AT4G28400 38.095 210 119 7 125 328 36 240 2.52e-34 127
MS.gene57009.t1 AT2G34740 34.274 248 148 8 137 379 101 338 7.90e-34 128
MS.gene57009.t1 AT3G11410 36.481 233 120 4 132 337 112 343 1.24e-33 129
MS.gene57009.t1 AT2G40860 32.927 246 140 5 132 362 400 635 4.03e-33 130
MS.gene57009.t1 AT1G07430 35.169 236 129 5 125 337 121 355 5.01e-33 128
MS.gene57009.t1 AT5G59220 35.102 245 134 4 125 347 112 353 7.96e-32 124
MS.gene57009.t1 AT1G34750 39.151 212 116 9 124 329 36 240 1.75e-29 114
MS.gene57009.t1 AT2G34740 37.000 200 116 7 137 331 97 291 3.91e-29 115
MS.gene57009.t1 AT2G34740 37.438 203 111 8 137 331 115 309 4.18e-29 115
MS.gene57009.t1 AT3G62260 31.224 237 141 5 154 373 26 257 4.19e-29 114
MS.gene57009.t1 AT3G17250 28.520 277 161 8 128 373 121 391 4.72e-29 117
MS.gene57009.t1 AT3G62260 31.224 237 141 5 154 373 115 346 7.47e-29 115
MS.gene57009.t1 AT3G62260 31.224 237 141 5 154 373 116 347 7.81e-29 115
MS.gene57009.t1 AT4G31860 30.182 275 122 8 125 338 24 289 2.59e-28 112
MS.gene57009.t1 AT4G31860 28.213 319 152 10 125 377 24 331 2.62e-28 114
MS.gene57009.t1 AT5G02760 31.674 221 111 6 155 336 72 291 3.15e-28 114
MS.gene57009.t1 AT3G55050 34.375 224 103 7 155 336 84 305 1.33e-27 112
MS.gene57009.t1 AT3G55050 34.375 224 103 7 155 336 84 305 1.33e-27 112
MS.gene57009.t1 AT2G25070 30.769 273 123 7 125 338 24 289 3.58e-27 110
MS.gene57009.t1 AT2G25070 30.769 273 123 7 125 338 24 289 3.58e-27 110
MS.gene57009.t1 AT3G12620 32.743 226 102 6 155 335 83 303 8.44e-27 110
MS.gene57009.t1 AT3G12620 32.743 226 102 6 155 335 83 303 8.44e-27 110
MS.gene57009.t1 AT4G33920 30.000 280 135 9 155 375 61 338 8.71e-27 110
MS.gene57009.t1 AT1G18030 31.780 236 131 8 131 339 81 313 2.94e-26 108
MS.gene57009.t1 AT5G06750 32.328 232 108 7 151 336 78 306 6.73e-26 107
MS.gene57009.t1 AT5G06750 32.328 232 108 7 151 336 78 306 6.73e-26 107
MS.gene57009.t1 AT1G18030 32.883 222 119 8 131 325 81 299 7.19e-26 106
MS.gene57009.t1 AT4G38520 33.632 223 108 8 155 337 81 303 3.48e-25 105
MS.gene57009.t1 AT4G38520 33.632 223 108 8 155 337 81 303 3.48e-25 105
MS.gene57009.t1 AT4G31860 30.268 261 112 8 125 324 24 275 3.92e-25 103
MS.gene57009.t1 AT3G51370 30.357 224 114 6 155 337 79 301 2.30e-24 103
MS.gene57009.t1 AT3G51370 30.357 224 114 6 155 337 79 301 2.30e-24 103
MS.gene57009.t1 AT5G66080 31.839 223 112 6 155 337 82 304 1.06e-23 101
MS.gene57009.t1 AT2G40860 32.338 201 116 4 132 317 400 595 1.45e-23 102
MS.gene57009.t1 AT4G33920 30.579 242 108 8 193 375 15 255 4.95e-23 98.2
MS.gene57009.t1 AT4G33920 32.227 211 93 6 214 375 16 225 2.59e-22 95.5
MS.gene57009.t1 AT1G09160 29.289 239 146 9 153 375 66 297 1.02e-21 96.3
MS.gene57009.t1 AT1G09160 29.289 239 146 9 153 375 66 297 1.02e-21 96.3
MS.gene57009.t1 AT1G47380 29.388 245 146 10 149 375 58 293 3.56e-21 94.7
MS.gene57009.t1 AT4G27800 28.179 291 155 10 131 375 66 348 4.83e-21 94.0
MS.gene57009.t1 AT3G06270 25.753 299 167 11 125 376 53 343 6.23e-21 93.2
MS.gene57009.t1 AT5G06750 32.461 191 85 5 192 338 36 226 3.26e-20 90.5
MS.gene57009.t1 AT3G17090 28.251 223 120 7 155 337 84 306 5.41e-20 90.1
MS.gene57009.t1 AT3G17090 26.354 277 150 9 155 377 84 360 5.92e-20 90.9
MS.gene57009.t1 AT5G57050 33.831 201 93 7 125 291 113 307 8.18e-20 89.4
MS.gene57009.t1 AT3G51370 34.194 155 71 3 214 337 62 216 1.41e-19 88.6
MS.gene57009.t1 AT1G68410 26.778 239 152 8 153 375 71 302 2.42e-19 89.4
MS.gene57009.t1 AT1G68410 26.778 239 152 8 153 375 71 302 2.42e-19 89.4
MS.gene57009.t1 AT1G68410 26.778 239 152 8 153 375 71 302 2.42e-19 89.4
MS.gene57009.t1 AT1G68410 26.778 239 152 8 153 375 71 302 2.42e-19 89.4
MS.gene57009.t1 AT5G27930 29.836 305 158 15 118 373 55 352 3.78e-19 88.6
MS.gene57009.t1 AT5G27930 29.836 305 158 15 118 373 55 352 3.78e-19 88.6
MS.gene57009.t1 AT5G66080 32.961 179 86 5 193 337 22 200 1.62e-18 85.1
MS.gene57009.t1 AT3G63320 26.198 313 136 10 157 376 71 381 2.91e-18 86.3
MS.gene57009.t1 AT3G63340 28.685 251 108 9 189 376 204 446 5.07e-18 85.9
MS.gene57009.t1 AT3G63340 28.685 251 108 9 189 376 204 446 8.95e-18 85.9
MS.gene57009.t1 AT3G63340 28.685 251 108 9 189 376 204 446 9.92e-18 85.5
MS.gene57009.t1 AT3G63340 28.685 251 108 9 189 376 204 446 9.92e-18 85.5
MS.gene57009.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.01e-17 85.5
MS.gene57009.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.01e-17 85.5
MS.gene57009.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.01e-17 85.5
MS.gene57009.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.01e-17 85.5
MS.gene57009.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.04e-17 85.5
MS.gene57009.t1 AT3G63340 28.685 251 108 9 189 376 204 446 1.05e-17 85.5
MS.gene57009.t1 AT3G63320 28.163 245 117 8 189 376 56 298 1.09e-17 84.0
MS.gene57009.t1 AT3G16800 30.000 250 133 10 126 337 64 309 1.72e-17 83.2
MS.gene57009.t1 AT3G16800 30.000 250 133 10 126 337 64 309 1.72e-17 83.2
MS.gene57009.t1 AT3G16800 30.000 250 133 10 126 337 64 309 1.72e-17 83.2
MS.gene57009.t1 AT5G01700 27.645 293 161 11 130 377 4 290 3.00e-17 82.4
MS.gene57009.t1 AT1G72770 32.727 165 81 3 155 290 238 401 8.37e-17 81.6
MS.gene57009.t1 AT1G72770 32.727 165 81 3 155 290 238 401 8.37e-17 81.6
MS.gene57009.t1 AT5G01700 27.609 297 164 11 126 377 49 339 9.13e-17 81.6
MS.gene57009.t1 AT3G16800 39.007 141 68 6 214 337 75 214 2.38e-16 78.6
MS.gene57009.t1 AT3G16800 39.007 141 68 6 214 337 75 214 2.38e-16 78.6
MS.gene57009.t1 AT5G59220 31.915 188 103 4 125 290 112 296 2.42e-16 79.3
MS.gene57009.t1 AT3G63340 34.899 149 73 6 244 376 339 479 3.41e-15 77.8
MS.gene57009.t1 AT3G05640 27.491 291 161 14 126 373 64 347 6.10e-15 75.9
MS.gene57009.t1 AT3G05640 27.491 291 161 14 126 373 64 347 6.10e-15 75.9
MS.gene57009.t1 AT3G05640 27.491 291 161 14 126 373 64 347 6.10e-15 75.9
MS.gene57009.t1 AT1G22280 33.553 152 90 8 125 270 34 180 1.07e-13 69.7
MS.gene57009.t1 AT3G16560 24.281 313 148 10 150 375 170 480 1.65e-13 72.0
MS.gene57009.t1 AT3G16560 24.281 313 148 10 150 375 170 480 1.65e-13 72.0
MS.gene57009.t1 AT3G16560 24.281 313 148 10 150 375 170 480 1.65e-13 72.0
MS.gene57009.t1 AT3G16560 25.746 268 128 8 150 348 170 435 2.23e-13 71.6
MS.gene57009.t1 AT5G36250 23.793 290 152 9 114 336 57 344 7.13e-12 67.0
MS.gene57009.t1 AT5G19280 29.412 238 132 10 132 339 318 549 2.42e-11 65.5
MS.gene57009.t1 AT1G79630 35.252 139 73 5 214 336 152 289 4.20e-11 64.7
MS.gene57009.t1 AT1G79630 35.252 139 73 5 214 336 152 289 4.20e-11 64.7
MS.gene57009.t1 AT1G79630 35.252 139 73 5 214 336 112 249 4.21e-11 64.3
MS.gene57009.t1 AT1G79630 35.252 139 73 5 214 336 112 249 4.21e-11 64.3
MS.gene57009.t1 AT1G79630 35.252 139 73 5 214 336 112 249 4.21e-11 64.3
MS.gene57009.t1 AT1G79630 35.252 139 73 5 214 336 112 249 4.21e-11 64.3
MS.gene57009.t1 AT1G79630 35.507 138 72 5 214 335 218 354 6.53e-11 64.3
MS.gene57009.t1 AT1G79630 35.507 138 72 5 214 335 222 358 7.58e-11 63.9

Find 85 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAGCTTCAGATGGATTA+TGG 0.192944 5.1:+55256882 MS.gene57009:CDS
TTTACGTCTAACAAAGATTC+TGG 0.196863 5.1:+55254835 MS.gene57009:CDS
TCTTCGTGGTGAAAACAATT+TGG 0.251614 5.1:+55255056 MS.gene57009:CDS
GAGAGGGAGGAGGGAGTATA+TGG 0.257999 5.1:+55255008 MS.gene57009:CDS
GTCTGTTTCAAGAGGCTCTT+TGG 0.277645 5.1:+55257237 MS.gene57009:CDS
CTCATTCCAGGTTAGTAATC+AGG 0.298380 5.1:+55257132 MS.gene57009:intron
AATTGAAACACTATGTTTAG+AGG 0.303735 5.1:+55257284 MS.gene57009:CDS
TTGATTTATGTCGCGGTGTT+TGG 0.326760 5.1:+55256741 MS.gene57009:CDS
TGCCGCAAATTCAGCGGCTT+TGG 0.344353 5.1:-55256316 None:intergenic
GTTGTGTAACAGCATTCATT+AGG 0.357922 5.1:+55256469 MS.gene57009:CDS
AATATTAACAAGTCATGTTC+AGG 0.369231 5.1:-55256863 None:intergenic
ATTAGCTTCAGATGGATTAT+GGG 0.376455 5.1:+55256883 MS.gene57009:CDS
TTCGGTAACCGAAGACAAAA+AGG 0.394385 5.1:-55254799 None:intergenic
CGCGGTGTTTGGAGGATTCA+AGG 0.409122 5.1:+55256752 MS.gene57009:CDS
ATTCTAATAACTTTAGTCTC+AGG 0.420683 5.1:-55256836 None:intergenic
GTTGTTGAGGCGGAGGGAGA+TGG 0.425322 5.1:+55254967 MS.gene57009:CDS
TGCCAAAGCCGCTGAATTTG+CGG 0.431289 5.1:+55256314 MS.gene57009:CDS
TAACAACCAACAGCCATTGA+TGG 0.443428 5.1:+55257192 MS.gene57009:CDS
ATTTATGTCGCGGTGTTTGG+AGG 0.459287 5.1:+55256744 MS.gene57009:CDS
TTACGTCTAACAAAGATTCT+GGG 0.460686 5.1:+55254836 MS.gene57009:CDS
ATGGAAGATCGTTATACAGC+TGG 0.461700 5.1:+55255027 MS.gene57009:CDS
TTTATTGTAAGAGAGGGAGG+AGG 0.476578 5.1:+55254998 MS.gene57009:CDS
CTGTTTATTGTAAGAGAGGG+AGG 0.478469 5.1:+55254995 MS.gene57009:CDS
TTGTTGAGGCGGAGGGAGAT+GGG 0.484067 5.1:+55254968 MS.gene57009:CDS
TACAGGCCATCAATGGCTGT+TGG 0.484520 5.1:-55257198 None:intergenic
ACCTTCAAGGGAAGATGAAA+AGG 0.484633 5.1:+55256581 MS.gene57009:CDS
TTGCAGAAAAGAGATGAAGA+AGG 0.490349 5.1:-55254661 None:intergenic
TAACTTAGAAAAGAACATCT+TGG 0.492082 5.1:+55256341 MS.gene57009:CDS
GAGGGATGTTGTTGAGGCGG+AGG 0.493467 5.1:+55254960 MS.gene57009:CDS
TTATTGTAAGAGAGGGAGGA+GGG 0.495221 5.1:+55254999 MS.gene57009:CDS
TTCAGATGGATTATGGGATA+AGG 0.496992 5.1:+55256889 MS.gene57009:CDS
CTTGCTGTATCAAGAGGAAT+CGG 0.497083 5.1:+55256779 MS.gene57009:CDS
TCACCCATTGTTTCAAGTGT+CGG 0.498005 5.1:-55256805 None:intergenic
GCACAGTTGTCTGTTTCAAG+AGG 0.499531 5.1:+55257229 MS.gene57009:CDS
ATCTGATCACCGACCTTCAA+GGG 0.504972 5.1:+55256569 MS.gene57009:CDS
CATCTGATCACCGACCTTCA+AGG 0.507130 5.1:+55256568 MS.gene57009:CDS
ACAGCTGGGGTTAATCTTCG+TGG 0.510384 5.1:+55255042 MS.gene57009:CDS
CGACACCGTCTGCGGTGGCG+AGG 0.516352 5.1:+55254941 MS.gene57009:CDS
ATTCTGTTTATTGTAAGAGA+GGG 0.518939 5.1:+55254992 MS.gene57009:CDS
TTGTTAATATTAGCTTCAGA+TGG 0.519141 5.1:+55256875 MS.gene57009:CDS
CAGCGGCTTTGGCACCTCCA+TGG 0.527083 5.1:-55256305 None:intergenic
TATTCTGTTTATTGTAAGAG+AGG 0.528687 5.1:+55254991 MS.gene57009:CDS
GTGCTGTTATTAGTAGAGGA+GGG 0.529836 5.1:+55256529 MS.gene57009:CDS
TCGGTTACCGAAACTACCCT+TGG 0.532247 5.1:+55254810 MS.gene57009:CDS
TTTCATCTTCCCTTGAAGGT+CGG 0.533441 5.1:-55256578 None:intergenic
AGACCGACACTTGAAACAAT+GGG 0.534360 5.1:+55256802 MS.gene57009:CDS
AGGGATGTTGTTGAGGCGGA+GGG 0.535503 5.1:+55254961 MS.gene57009:CDS
CAATTTGATTATCATGACAC+TGG 0.543628 5.1:-55257266 None:intergenic
CGTGCTGTTATTAGTAGAGG+AGG 0.544244 5.1:+55256528 MS.gene57009:CDS
TGGAAGATCGTTATACAGCT+GGG 0.545761 5.1:+55255028 MS.gene57009:CDS
TTTGGCGTATTTGATGGCCA+TGG 0.545794 5.1:+55256288 MS.gene57009:CDS
GGTGAAGAAGGTGAAGAACA+AGG 0.546327 5.1:-55254778 None:intergenic
TGAACTCAGAATCGGTATTG+AGG 0.547989 5.1:-55256419 None:intergenic
TGCCGTGCTGTTATTAGTAG+AGG 0.550511 5.1:+55256525 MS.gene57009:CDS
TGCTGTTATTAGTAGAGGAG+GGG 0.551553 5.1:+55256530 MS.gene57009:CDS
AGAAACAGGTATATTAAGCC+TGG 0.552089 5.1:-55254896 None:intergenic
GACACCGTCTGCGGTGGCGA+GGG 0.554379 5.1:+55254942 MS.gene57009:CDS
ACATCCCTCGCCACCGCAGA+CGG 0.561418 5.1:-55254946 None:intergenic
GTAACAGCATTCATTAGGAA+TGG 0.564177 5.1:+55256474 MS.gene57009:CDS
AAACATGTCTTGCTCCGTCG+CGG 0.570392 5.1:+55254615 None:intergenic
TGAAGAACAAGGAGAAGGCG+AGG 0.572840 5.1:-55254767 None:intergenic
GCCACCGCAGACGGTGTCGC+CGG 0.573609 5.1:-55254937 None:intergenic
GAGACCGACACTTGAAACAA+TGG 0.575527 5.1:+55256801 MS.gene57009:CDS
CGTCGCGGTTTCGAATTCGC+CGG 0.576069 5.1:+55254630 MS.gene57009:CDS
GGATCTCTTGCTGTATCAAG+AGG 0.589287 5.1:+55256773 MS.gene57009:CDS
TGAAGAGGAAAAGACCTACC+AGG 0.589521 5.1:+55254878 MS.gene57009:CDS
ACAGGTATATTAAGCCTGGT+AGG 0.595689 5.1:-55254892 None:intergenic
GAAGGTGAAGAACAAGGAGA+AGG 0.604617 5.1:-55254772 None:intergenic
GAGCGACGAAGATGATGTTG+AGG 0.609121 5.1:+55256377 MS.gene57009:CDS
GGCGAGGGATGTTGTTGAGG+CGG 0.612440 5.1:+55254957 MS.gene57009:CDS
CGACGAAGATGATGTTGAGG+AGG 0.613126 5.1:+55256380 MS.gene57009:CDS
AACTTAGTTGTGTCTAACGC+TGG 0.615689 5.1:+55256498 MS.gene57009:CDS
TCCGGCGACACCGTCTGCGG+TGG 0.616313 5.1:+55254936 MS.gene57009:CDS
GTTATTTGCCGCAAATTCAG+CGG 0.620742 5.1:-55256322 None:intergenic
TGTTCCGGCGACACCGTCTG+CGG 0.623253 5.1:+55254933 MS.gene57009:CDS
GGTGGCGAGGGATGTTGTTG+AGG 0.629842 5.1:+55254954 MS.gene57009:CDS
TAGTAGAGGAGGGGTTGCTG+AGG 0.630412 5.1:+55256539 MS.gene57009:CDS
CGGCGAATTCGAAACCGCGA+CGG 0.641319 5.1:-55254629 None:intergenic
AAAGGACAGAATTGAGACCC+TGG 0.643034 5.1:+55256599 MS.gene57009:CDS
CTCCTCTACTAATAACAGCA+CGG 0.646708 5.1:-55256527 None:intergenic
GGTTATGTTGATTTATGTCG+CGG 0.653499 5.1:+55256734 MS.gene57009:CDS
GATGAAGAAGGTGAAAACAC+CGG 0.659578 5.1:-55254649 None:intergenic
GGAAGATCGTTATACAGCTG+GGG 0.671830 5.1:+55255029 MS.gene57009:CDS
GTTGAGGAGGCAGTGAAGCG+CGG 0.685913 5.1:+55256393 MS.gene57009:CDS
GGCGTATTTGATGGCCATGG+AGG 0.699437 5.1:+55256291 MS.gene57009:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATATTTGTTATTTTTT+TGG + chr5.1:55255233-55255252 MS.gene57009:intron 10.0%
!!! TTTTCTAATTTTTATTTTGA+TGG - chr5.1:55255919-55255938 None:intergenic 10.0%
!! ATAGAATATATAATATTGAG+TGG + chr5.1:55255110-55255129 MS.gene57009:intron 15.0%
!! AATATATAATATTGAGTGGT+TGG + chr5.1:55255114-55255133 MS.gene57009:intron 20.0%
!! AGATAAGTAAATATCTTCAA+AGG - chr5.1:55256045-55256064 None:intergenic 20.0%
!! CAAACAAACAATAAGTTATT+TGG + chr5.1:55255959-55255978 MS.gene57009:intron 20.0%
!! CACAATTCAAATTTAACTAA+TGG - chr5.1:55255555-55255574 None:intergenic 20.0%
!! TGATTTACTCAAATTATTAG+CGG - chr5.1:55255368-55255387 None:intergenic 20.0%
!!! TTTACGTGGTTTTTTTTTTT+TGG - chr5.1:55256107-55256126 None:intergenic 20.0%
! AATAAGTTATTTGGCACAAA+AGG + chr5.1:55255968-55255987 MS.gene57009:intron 25.0%
! AATATTAACAAGTCATGTTC+AGG - chr5.1:55256866-55256885 None:intergenic 25.0%
! AATGGTAAAGAAAATTTACC+AGG - chr5.1:55256620-55256639 None:intergenic 25.0%
! ATGGTAAAGAAAATTTACCA+GGG - chr5.1:55256619-55256638 None:intergenic 25.0%
! ATTCTAATAACTTTAGTCTC+AGG - chr5.1:55256839-55256858 None:intergenic 25.0%
! ATTCTGTTTATTGTAAGAGA+GGG + chr5.1:55254992-55255011 MS.gene57009:CDS 25.0%
! CAAACTTGATTTAATTGATC+TGG + chr5.1:55255182-55255201 MS.gene57009:intron 25.0%
! GTAGATAGTTGAAACAAATT+AGG + chr5.1:55255574-55255593 MS.gene57009:intron 25.0%
! GTTAATCATTCGATATCAAA+AGG - chr5.1:55257095-55257114 None:intergenic 25.0%
! TAACTTAGAAAAGAACATCT+TGG + chr5.1:55256341-55256360 MS.gene57009:CDS 25.0%
! TATAAGATGTGATTGTGTAA+AGG + chr5.1:55256223-55256242 MS.gene57009:intron 25.0%
! TATTCTGTTTATTGTAAGAG+AGG + chr5.1:55254991-55255010 MS.gene57009:CDS 25.0%
! TTCAGTGTAATTATATGTGT+CGG + chr5.1:55255393-55255412 MS.gene57009:intron 25.0%
! TTCATGAAAAAAGATCTACA+TGG + chr5.1:55256438-55256457 MS.gene57009:CDS 25.0%
!! TTGATATGCTTTTGTCAATT+GGG + chr5.1:55255145-55255164 MS.gene57009:intron 25.0%
!! TTGTTAATATTAGCTTCAGA+TGG + chr5.1:55256875-55256894 MS.gene57009:CDS 25.0%
!!! AATTTTTAAGCTATGTAGCT+CGG + chr5.1:55255314-55255333 MS.gene57009:intron 25.0%
!!! GTTATTTTTTTGGTCTGATT+TGG + chr5.1:55255243-55255262 MS.gene57009:intron 25.0%
!!! GTTTATTTTGTGATAATTGC+AGG + chr5.1:55256260-55256279 MS.gene57009:intron 25.0%
!!! TTTAATTGATCTGGTCTTAT+TGG + chr5.1:55255191-55255210 MS.gene57009:intron 25.0%
!!! TTTTTTCATGAACTCAGAAT+CGG - chr5.1:55256430-55256449 None:intergenic 25.0%
!!! TTTTTTGGTTAATTTGTACG+TGG - chr5.1:55256092-55256111 None:intergenic 25.0%
AAGAACCAAACTCAAATACA+AGG - chr5.1:55256682-55256701 None:intergenic 30.0%
AAGAGAACTCAATACACAAA+TGG - chr5.1:55256638-55256657 None:intergenic 30.0%
ATCCACTCCAAATAGAAAAT+GGG + chr5.1:55255782-55255801 MS.gene57009:intron 30.0%
ATGAAAAAAGATCTACATGG+TGG + chr5.1:55256441-55256460 MS.gene57009:CDS 30.0%
CAATTTGATTATCATGACAC+TGG - chr5.1:55257269-55257288 None:intergenic 30.0%
GAATGATACAAAAAGTAGCT+TGG + chr5.1:55255670-55255689 MS.gene57009:intron 30.0%
GATCAACCTATATGTGTATT+CGG + chr5.1:55256934-55256953 MS.gene57009:intron 30.0%
TCCTTCAAATATCTAGTGAA+GGG - chr5.1:55255697-55255716 None:intergenic 30.0%
TTACGTCTAACAAAGATTCT+GGG + chr5.1:55254836-55254855 MS.gene57009:CDS 30.0%
TTGTTAGACGTAAAAACCAA+GGG - chr5.1:55254829-55254848 None:intergenic 30.0%
TTTACGTCTAACAAAGATTC+TGG + chr5.1:55254835-55254854 MS.gene57009:CDS 30.0%
TTTGTTAGACGTAAAAACCA+AGG - chr5.1:55254830-55254849 None:intergenic 30.0%
! AAGTTTCTTTTTCTCATTCC+AGG + chr5.1:55257120-55257139 MS.gene57009:intron 30.0%
! ATAAGCCTTGTGATTGTTAT+TGG - chr5.1:55255843-55255862 None:intergenic 30.0%
! GCTATTACTAATGACTTTTG+AGG - chr5.1:55255818-55255837 None:intergenic 30.0%
! GTTGATATGCTTTTGTCAAT+TGG + chr5.1:55255144-55255163 MS.gene57009:intron 30.0%
! TGAAACCTTGTATTTGAGTT+TGG + chr5.1:55256674-55256693 MS.gene57009:intron 30.0%
! TTCATAGATTTTAAGCTGCT+AGG + chr5.1:55255480-55255499 MS.gene57009:intron 30.0%
!! ATTACTAATGACTTTTGAGG+TGG - chr5.1:55255815-55255834 None:intergenic 30.0%
!! ATTAGCTTCAGATGGATTAT+GGG + chr5.1:55256883-55256902 MS.gene57009:CDS 30.0%
!! ATTTTCTATTTGGAGTGGAT+CGG - chr5.1:55255782-55255801 None:intergenic 30.0%
!! GAAAGCATAAGAGAATGTTT+TGG - chr5.1:55256155-55256174 None:intergenic 30.0%
!! TATTAGCTTCAGATGGATTA+TGG + chr5.1:55256882-55256901 MS.gene57009:CDS 30.0%
!! TGTTGTTGTTGTTGATGATT+TGG + chr5.1:55256195-55256214 MS.gene57009:intron 30.0%
!!! TGATAATTGCAGGCTTTTTT+TGG + chr5.1:55256270-55256289 MS.gene57009:intron 30.0%
ACATGATTTGAGTGTGTGTT+TGG - chr5.1:55257017-55257036 None:intergenic 35.0%
ACTCAAATTATTAGCGGTGT+CGG - chr5.1:55255362-55255381 None:intergenic 35.0%
AGAAACAGGTATATTAAGCC+TGG - chr5.1:55254899-55254918 None:intergenic 35.0%
AGATATTTGAAGGACCAAAC+TGG + chr5.1:55255703-55255722 MS.gene57009:intron 35.0%
CCTTCAAATATCTAGTGAAG+GGG - chr5.1:55255696-55255715 None:intergenic 35.0%
GATCCACTCCAAATAGAAAA+TGG + chr5.1:55255781-55255800 MS.gene57009:intron 35.0%
GCATTGAAATTTGTCTTGCA+GGG + chr5.1:55256710-55256729 MS.gene57009:intron 35.0%
GTAAAAACCAAGGGTAGTTT+CGG - chr5.1:55254820-55254839 None:intergenic 35.0%
GTAACAGCATTCATTAGGAA+TGG + chr5.1:55256474-55256493 MS.gene57009:CDS 35.0%
GTCCTTCAAATATCTAGTGA+AGG - chr5.1:55255698-55255717 None:intergenic 35.0%
GTTGTGTAACAGCATTCATT+AGG + chr5.1:55256469-55256488 MS.gene57009:CDS 35.0%
TCTTCGTGGTGAAAACAATT+TGG + chr5.1:55255056-55255075 MS.gene57009:CDS 35.0%
TGCATTGAAATTTGTCTTGC+AGG + chr5.1:55256709-55256728 MS.gene57009:intron 35.0%
TGTAAAGGTCTTACTTGTAC+AGG + chr5.1:55256238-55256257 MS.gene57009:intron 35.0%
TTGCAGAAAAGAGATGAAGA+AGG - chr5.1:55254664-55254683 None:intergenic 35.0%
! ATAAGCAAGTTGCTTTGCTA+TGG - chr5.1:55256021-55256040 None:intergenic 35.0%
! CAAAAAGCATGTTCAGAAAC+AGG - chr5.1:55254913-55254932 None:intergenic 35.0%
! CTTCTTCACCTTTTTGTCTT+CGG + chr5.1:55254791-55254810 MS.gene57009:CDS 35.0%
! GGAAAGTGTGTTTAGTTACA+CGG - chr5.1:55257074-55257093 None:intergenic 35.0%
! GTTGTTGTTGTTGTTGAAGA+TGG - chr5.1:55254727-55254746 None:intergenic 35.0%
! TTCCTGTCCCATTTTCTATT+TGG - chr5.1:55255792-55255811 None:intergenic 35.0%
!! GGTTATGTTGATTTATGTCG+CGG + chr5.1:55256734-55256753 MS.gene57009:CDS 35.0%
!! TGAACATGCTTTTTGTGTTC+CGG + chr5.1:55254918-55254937 MS.gene57009:CDS 35.0%
!! TTCAGATGGATTATGGGATA+AGG + chr5.1:55256889-55256908 MS.gene57009:CDS 35.0%
!!! AGAATGATGCTGTTTTGAAG+AGG + chr5.1:55254863-55254882 MS.gene57009:CDS 35.0%
!!! GCTTTTTTTGGCGTATTTGA+TGG + chr5.1:55256282-55256301 MS.gene57009:CDS 35.0%
AACTTAGTTGTGTCTAACGC+TGG + chr5.1:55256498-55256517 MS.gene57009:CDS 40.0%
ACAGGTATATTAAGCCTGGT+AGG - chr5.1:55254895-55254914 None:intergenic 40.0%
ACCTTCAAGGGAAGATGAAA+AGG + chr5.1:55256581-55256600 MS.gene57009:CDS 40.0%
AGACCGACACTTGAAACAAT+GGG + chr5.1:55256802-55256821 MS.gene57009:CDS 40.0%
AGCAGCCAATAACAATCACA+AGG + chr5.1:55255835-55255854 MS.gene57009:intron 40.0%
ATGGAAGATCGTTATACAGC+TGG + chr5.1:55255027-55255046 MS.gene57009:CDS 40.0%
CAAACGCCGAATACACATAT+AGG - chr5.1:55256943-55256962 None:intergenic 40.0%
CCCCTTCACTAGATATTTGA+AGG + chr5.1:55255693-55255712 MS.gene57009:intron 40.0%
CGAAGACAAAAAGGTGAAGA+AGG - chr5.1:55254793-55254812 None:intergenic 40.0%
CTCATTCCAGGTTAGTAATC+AGG + chr5.1:55257132-55257151 MS.gene57009:intron 40.0%
CTCCAAATAGAAAATGGGAC+AGG + chr5.1:55255787-55255806 MS.gene57009:intron 40.0%
CTCCTCTACTAATAACAGCA+CGG - chr5.1:55256530-55256549 None:intergenic 40.0%
CTGTTTATTGTAAGAGAGGG+AGG + chr5.1:55254995-55255014 MS.gene57009:CDS 40.0%
GATGAAGAAGGTGAAAACAC+CGG - chr5.1:55254652-55254671 None:intergenic 40.0%
GTTATTTGCCGCAAATTCAG+CGG - chr5.1:55256325-55256344 None:intergenic 40.0%
TAACAACCAACAGCCATTGA+TGG + chr5.1:55257192-55257211 MS.gene57009:CDS 40.0%
TAAGCTATGTAGCTCGGATA+CGG + chr5.1:55255320-55255339 MS.gene57009:intron 40.0%
TGAACTCAGAATCGGTATTG+AGG - chr5.1:55256422-55256441 None:intergenic 40.0%
TGCTGTTATTAGTAGAGGAG+GGG + chr5.1:55256530-55256549 MS.gene57009:CDS 40.0%
TGGAAGATCGTTATACAGCT+GGG + chr5.1:55255028-55255047 MS.gene57009:CDS 40.0%
TGTACGTGGTGTTCTTTGTT+TGG - chr5.1:55256078-55256097 None:intergenic 40.0%
TTATTGTAAGAGAGGGAGGA+GGG + chr5.1:55254999-55255018 MS.gene57009:CDS 40.0%
TTCGGTAACCGAAGACAAAA+AGG - chr5.1:55254802-55254821 None:intergenic 40.0%
TTGAAATTTGTCTTGCAGGG+TGG + chr5.1:55256713-55256732 MS.gene57009:intron 40.0%
TTGATTTATGTCGCGGTGTT+TGG + chr5.1:55256741-55256760 MS.gene57009:CDS 40.0%
TTTATTGTAAGAGAGGGAGG+AGG + chr5.1:55254998-55255017 MS.gene57009:CDS 40.0%
TTTCATCTTCCCTTGAAGGT+CGG - chr5.1:55256581-55256600 None:intergenic 40.0%
! AGCTTTTTACAGGCCATCAA+TGG - chr5.1:55257208-55257227 None:intergenic 40.0%
! AGGACTTTTGGATACCAGTT+TGG - chr5.1:55255720-55255739 None:intergenic 40.0%
! ATTGCTCGTCAATTTTGCGT+AGG + chr5.1:55257166-55257185 MS.gene57009:CDS 40.0%
! CAACTGTGCAAGCTTTTTAC+AGG - chr5.1:55257218-55257237 None:intergenic 40.0%
! CAAGTTGCTTTGCTATGGTT+TGG - chr5.1:55256016-55256035 None:intergenic 40.0%
! CTTGCTGTATCAAGAGGAAT+CGG + chr5.1:55256779-55256798 MS.gene57009:CDS 40.0%
! GTACGTGGTGTTCTTTGTTT+GGG - chr5.1:55256077-55256096 None:intergenic 40.0%
! GTCCCATTTTCTATTTGGAG+TGG - chr5.1:55255787-55255806 None:intergenic 40.0%
! GTGCTGTTATTAGTAGAGGA+GGG + chr5.1:55256529-55256548 MS.gene57009:CDS 40.0%
! GTTCTTTGTTTGGGTTCTAG+AGG - chr5.1:55256068-55256087 None:intergenic 40.0%
! TCACCCATTGTTTCAAGTGT+CGG - chr5.1:55256808-55256827 None:intergenic 40.0%
! TCCTTTTCATCTTCCCTTGA+AGG - chr5.1:55256585-55256604 None:intergenic 40.0%
AAAGGACAGAATTGAGACCC+TGG + chr5.1:55256599-55256618 MS.gene57009:CDS 45.0%
ACGTAAACAAGTGCAGCACA+GGG + chr5.1:55256120-55256139 MS.gene57009:intron 45.0%
ATCTGATCACCGACCTTCAA+GGG + chr5.1:55256569-55256588 MS.gene57009:CDS 45.0%
ATTTATGTCGCGGTGTTTGG+AGG + chr5.1:55256744-55256763 MS.gene57009:CDS 45.0%
CTGCTTCCTGATTACTAACC+TGG - chr5.1:55257141-55257160 None:intergenic 45.0%
GAAGGTGAAGAACAAGGAGA+AGG - chr5.1:55254775-55254794 None:intergenic 45.0%
GAGACCGACACTTGAAACAA+TGG + chr5.1:55256801-55256820 MS.gene57009:CDS 45.0%
GATACCAGGATCCTCCTAAA+CGG + chr5.1:55255443-55255462 MS.gene57009:intron 45.0%
GCACAGTTGTCTGTTTCAAG+AGG + chr5.1:55257229-55257248 MS.gene57009:CDS 45.0%
GGAAGATCGTTATACAGCTG+GGG + chr5.1:55255029-55255048 MS.gene57009:CDS 45.0%
GGTGAAGAAGGTGAAGAACA+AGG - chr5.1:55254781-55254800 None:intergenic 45.0%
GTCTGTTTCAAGAGGCTCTT+TGG + chr5.1:55257237-55257256 MS.gene57009:CDS 45.0%
GTTTAGGAGGATCCTGGTAT+CGG - chr5.1:55255444-55255463 None:intergenic 45.0%
TGAAGAGGAAAAGACCTACC+AGG + chr5.1:55254878-55254897 MS.gene57009:CDS 45.0%
! AGGTCAGGACATAGGACTTT+TGG - chr5.1:55255732-55255751 None:intergenic 45.0%
! CGTGCTGTTATTAGTAGAGG+AGG + chr5.1:55256528-55256547 MS.gene57009:CDS 45.0%
! GGATCTCTTGCTGTATCAAG+AGG + chr5.1:55256773-55256792 MS.gene57009:CDS 45.0%
! TGCCGTGCTGTTATTAGTAG+AGG + chr5.1:55256525-55256544 MS.gene57009:CDS 45.0%
! TTTGGCGTATTTGATGGCCA+TGG + chr5.1:55256288-55256307 MS.gene57009:CDS 45.0%
!! TCTGATTTGGTAGCTGCACA+TGG + chr5.1:55255256-55255275 MS.gene57009:intron 45.0%
ACAGCTGGGGTTAATCTTCG+TGG + chr5.1:55255042-55255061 MS.gene57009:CDS 50.0%
CACGTAAACAAGTGCAGCAC+AGG + chr5.1:55256119-55256138 MS.gene57009:intron 50.0%
CATCTGATCACCGACCTTCA+AGG + chr5.1:55256568-55256587 MS.gene57009:CDS 50.0%
CGACGAAGATGATGTTGAGG+AGG + chr5.1:55256380-55256399 MS.gene57009:CDS 50.0%
CTGTGCTGCACTTGTTTACG+TGG - chr5.1:55256121-55256140 None:intergenic 50.0%
GAGCGACGAAGATGATGTTG+AGG + chr5.1:55256377-55256396 MS.gene57009:CDS 50.0%
TACAGGCCATCAATGGCTGT+TGG - chr5.1:55257201-55257220 None:intergenic 50.0%
TCGGTTACCGAAACTACCCT+TGG + chr5.1:55254810-55254829 MS.gene57009:CDS 50.0%
TGAAGAACAAGGAGAAGGCG+AGG - chr5.1:55254770-55254789 None:intergenic 50.0%
TGCCAAAGCCGCTGAATTTG+CGG + chr5.1:55256314-55256333 MS.gene57009:CDS 50.0%
TGGCACAAAAGGCGACTACT+GGG + chr5.1:55255979-55255998 MS.gene57009:intron 50.0%
TTGGCACAAAAGGCGACTAC+TGG + chr5.1:55255978-55255997 MS.gene57009:intron 50.0%
! CTCAGAGGAAAAGTGCAACG+CGG + chr5.1:55255750-55255769 MS.gene57009:intron 50.0%
!! ATATGTGTCGGTGTCGTGTC+CGG + chr5.1:55255405-55255424 MS.gene57009:intron 50.0%
!! TTCCTCTGAGGTCAGGACAT+AGG - chr5.1:55255740-55255759 None:intergenic 50.0%
!!! TGCACTTTTCCTCTGAGGTC+AGG - chr5.1:55255747-55255766 None:intergenic 50.0%
ACCAGGATCCTCCTAAACGG+AGG + chr5.1:55255446-55255465 MS.gene57009:intron 55.0%
AGGGATGTTGTTGAGGCGGA+GGG + chr5.1:55254961-55254980 MS.gene57009:CDS 55.0%
CAGACACTCCTCCGTTTAGG+AGG - chr5.1:55255457-55255476 None:intergenic 55.0%
CGCGGTGTTTGGAGGATTCA+AGG + chr5.1:55256752-55256771 MS.gene57009:CDS 55.0%
GCACAGACACTCCTCCGTTT+AGG - chr5.1:55255460-55255479 None:intergenic 55.0%
GTCCTATGTCCTGACCTCAG+AGG + chr5.1:55255735-55255754 MS.gene57009:intron 55.0%
TAGTAGAGGAGGGGTTGCTG+AGG + chr5.1:55256539-55256558 MS.gene57009:CDS 55.0%
TATCGGACACGACACGACAC+CGG - chr5.1:55255427-55255446 None:intergenic 55.0%
TCCTCCGTTTAGGAGGATCC+TGG - chr5.1:55255450-55255469 None:intergenic 55.0%
TGCCGCAAATTCAGCGGCTT+TGG - chr5.1:55256319-55256338 None:intergenic 55.0%
TTGTTGAGGCGGAGGGAGAT+GGG + chr5.1:55254968-55254987 MS.gene57009:CDS 55.0%
! CGCGTTGCACTTTTCCTCTG+AGG - chr5.1:55255752-55255771 None:intergenic 55.0%
! GAGAGGGAGGAGGGAGTATA+TGG + chr5.1:55255008-55255027 MS.gene57009:CDS 55.0%
! GGAAAAGTGCAACGCGGTGT+TGG + chr5.1:55255756-55255775 MS.gene57009:intron 55.0%
! GGCGTATTTGATGGCCATGG+AGG + chr5.1:55256291-55256310 MS.gene57009:CDS 55.0%
CGGCGAATTCGAAACCGCGA+CGG - chr5.1:55254632-55254651 None:intergenic 60.0%
CGTCGCGGTTTCGAATTCGC+CGG + chr5.1:55254630-55254649 MS.gene57009:CDS 60.0%
GAGGGATGTTGTTGAGGCGG+AGG + chr5.1:55254960-55254979 MS.gene57009:CDS 60.0%
GCTCGGATACGGACACGACA+CGG + chr5.1:55255331-55255350 MS.gene57009:intron 60.0%
GGCGAGGGATGTTGTTGAGG+CGG + chr5.1:55254957-55254976 MS.gene57009:CDS 60.0%
GGTGGCGAGGGATGTTGTTG+AGG + chr5.1:55254954-55254973 MS.gene57009:CDS 60.0%
GTCGTGTCGTGTCCGATACC+AGG + chr5.1:55255429-55255448 MS.gene57009:intron 60.0%
GTTGAGGAGGCAGTGAAGCG+CGG + chr5.1:55256393-55256412 MS.gene57009:CDS 60.0%
GTTGTTGAGGCGGAGGGAGA+TGG + chr5.1:55254967-55254986 MS.gene57009:CDS 60.0%
ACATCCCTCGCCACCGCAGA+CGG - chr5.1:55254949-55254968 None:intergenic 65.0%
TGTTCCGGCGACACCGTCTG+CGG + chr5.1:55254933-55254952 MS.gene57009:CDS 65.0%
! CAGCGGCTTTGGCACCTCCA+TGG - chr5.1:55256308-55256327 None:intergenic 65.0%
GACACCGTCTGCGGTGGCGA+GGG + chr5.1:55254942-55254961 MS.gene57009:CDS 70.0%
CGACACCGTCTGCGGTGGCG+AGG + chr5.1:55254941-55254960 MS.gene57009:CDS 75.0%
TCCGGCGACACCGTCTGCGG+TGG + chr5.1:55254936-55254955 MS.gene57009:CDS 75.0%
!! GCCACCGCAGACGGTGTCGC+CGG - chr5.1:55254940-55254959 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr5.1 gene 55254619 55257303 55254619 ID=MS.gene57009
chr5.1 mRNA 55254619 55257303 55254619 ID=MS.gene57009.t1;Parent=MS.gene57009
chr5.1 exon 55254619 55255077 55254619 ID=MS.gene57009.t1.exon1;Parent=MS.gene57009.t1
chr5.1 CDS 55254619 55255077 55254619 ID=cds.MS.gene57009.t1;Parent=MS.gene57009.t1
chr5.1 exon 55256282 55256620 55256282 ID=MS.gene57009.t1.exon2;Parent=MS.gene57009.t1
chr5.1 CDS 55256282 55256620 55256282 ID=cds.MS.gene57009.t1;Parent=MS.gene57009.t1
chr5.1 exon 55256731 55256910 55256731 ID=MS.gene57009.t1.exon3;Parent=MS.gene57009.t1
chr5.1 CDS 55256731 55256910 55256731 ID=cds.MS.gene57009.t1;Parent=MS.gene57009.t1
chr5.1 exon 55257142 55257303 55257142 ID=MS.gene57009.t1.exon4;Parent=MS.gene57009.t1
chr5.1 CDS 55257142 55257303 55257142 ID=cds.MS.gene57009.t1;Parent=MS.gene57009.t1
Gene Sequence

>MS.gene57009

ATGTCTTGCTCCGTCGCGGTTTCGAATTCGCCGGTGTTTTCACCTTCTTCATCTCTTTTCTGCAACAAATCTGAAACGTTAACGTTATCTCTTTCTCATCTCAAACCATCTTCAACAACAACAACAACGTCTTCTTCATCGTCTTCTTCCTCGCCTTCTCCTTGTTCTTCACCTTCTTCACCTTTTTGTCTTCGGTTACCGAAACTACCCTTGGTTTTTACGTCTAACAAAGATTCTGGGTCGCAGAATGATGCTGTTTTGAAGAGGAAAAGACCTACCAGGCTTAATATACCTGTTTCTGAACATGCTTTTTGTGTTCCGGCGACACCGTCTGCGGTGGCGAGGGATGTTGTTGAGGCGGAGGGAGATGGGTATTCTGTTTATTGTAAGAGAGGGAGGAGGGAGTATATGGAAGATCGTTATACAGCTGGGGTTAATCTTCGTGGTGAAAACAATTTGGTAAGAAATTTTTTAACTTTTTTATTTTTTTGATAGAATATATAATATTGAGTGGTTGGTTTTGATGTTGATATGCTTTTGTCAATTGGGTTTGTTGAAAGTTTCAAACTTGATTTAATTGATCTGGTCTTATTGGATCTAATTGTTTGCAGAATTTCAATATTTGTTATTTTTTTGGTCTGATTTGGTAGCTGCACATGGAAAATTTGTGATTAATTTATGTAGTTGAAAAAGTCAATTTTTAAGCTATGTAGCTCGGATACGGACACGACACGGACACGCCGACACCGCTAATAATTTGAGTAAATCACATAATTCAGTGTAATTATATGTGTCGGTGTCGTGTCCGGTGTCGTGTCGTGTCCGATACCAGGATCCTCCTAAACGGAGGAGTGTCTGTGCTTCATAGATTTTAAGCTGCTAGGATTTTTGAGTTGCTGCTTTTGAAGTTAAAAAGTTTGTCTTAGTGATTAGCCATTAGTTAAATTTGAATTGTGTAGATAGTTGAAACAAATTAGGAACATATGATTATGCATTTAATGTTTAATTGAGATTTGCTGAATATGCTACAAAGTAATTGTGTCACTTTAGAGAATGATACAAAAAGTAGCTTGGCCCCTTCACTAGATATTTGAAGGACCAAACTGGTATCCAAAAGTCCTATGTCCTGACCTCAGAGGAAAAGTGCAACGCGGTGTTGGCCGATCCACTCCAAATAGAAAATGGGACAGGAACCACCTCAAAAGTCATTAGTAATAGCAGCCAATAACAATCACAAGGCTTATGTCAACAACAACAAGAAGAAAAAAGAAAACATTTACAATGTTTGATACAGAAGCCATCAAAATAAAAATTAGAAAACAATGCAGAAACTTACATTGCAAACAAACAATAAGTTATTTGGCACAAAAGGCGACTACTGGGAAAAAAAAAATCCAAACCATAGCAAAGCAACTTGCTTATTCCTTTGAAGATATTTACTTATCTCCTCTAGAACCCAAACAAAGAACACCACGTACAAATTAACCAAAAAAAAAAAACCACGTAAACAAGTGCAGCACAGGGCAAGAACAACCAAAACATTCTCTTATGCTTTCATCTTCATTGTTGTTGTTGTTGTTGTTGTTGTTGATGATTTGGACTTATATAAGATGTGATTGTGTAAAGGTCTTACTTGTACAGGTTTATTTTGTGATAATTGCAGGCTTTTTTTGGCGTATTTGATGGCCATGGAGGTGCCAAAGCCGCTGAATTTGCGGCAAATAACTTAGAAAAGAACATCTTGGACGAAGTTATCATGAGCGACGAAGATGATGTTGAGGAGGCAGTGAAGCGCGGTTACCTCAATACCGATTCTGAGTTCATGAAAAAAGATCTACATGGTGGCTCTTGTTGTGTAACAGCATTCATTAGGAATGGTAACTTAGTTGTGTCTAACGCTGGTGATTGCCGTGCTGTTATTAGTAGAGGAGGGGTTGCTGAGGCACTAACATCTGATCACCGACCTTCAAGGGAAGATGAAAAGGACAGAATTGAGACCCTGGTAAATTTTCTTTACCATTTGTGTATTGAGTTCTCTTTTTATTTATGTTTTTTTGAAACCTTGTATTTGAGTTTGGTTCTTAATCTTATGCATTGAAATTTGTCTTGCAGGGTGGTTATGTTGATTTATGTCGCGGTGTTTGGAGGATTCAAGGATCTCTTGCTGTATCAAGAGGAATCGGAGACCGACACTTGAAACAATGGGTGACAGCAGAGCCTGAGACTAAAGTTATTAGAATTGAACCTGAACATGACTTGTTAATATTAGCTTCAGATGGATTATGGGATAAGGTAAGACTTATGAAATTTATTGCGATCAACCTATATGTGTATTCGGCGTTTGTCAAACATGATTTTGATTGAAATGTTTGACTAATGTCAAACTCGTGCGAATCCAAACACACACTCAAATCATGTTTGACAAAGATAAAATCAATCATGATGATTTTCGCCGTGTAACTAAACACACTTTCCTTTTGATATCGAATGATTAACTGATCAAGTTTCTTTTTCTCATTCCAGGTTAGTAATCAGGAAGCAGTAGACATTGCTCGTCAATTTTGCGTAGGAAATAACAACCAACAGCCATTGATGGCCTGTAAAAAGCTTGCACAGTTGTCTGTTTCAAGAGGCTCTTTGGATGATACCAGTGTCATGATAATCAAATTGAAACACTATGTTTAG
Protein sequence

>MS.gene57009.t1

MSCSVAVSNSPVFSPSSSLFCNKSETLTLSLSHLKPSSTTTTTSSSSSSSSPSPCSSPSSPFCLRLPKLPLVFTSNKDSGSQNDAVLKRKRPTRLNIPVSEHAFCVPATPSAVARDVVEAEGDGYSVYCKRGRREYMEDRYTAGVNLRGENNLAFFGVFDGHGGAKAAEFAANNLEKNILDEVIMSDEDDVEEAVKRGYLNTDSEFMKKDLHGGSCCVTAFIRNGNLVVSNAGDCRAVISRGGVAEALTSDHRPSREDEKDRIETLGGYVDLCRGVWRIQGSLAVSRGIGDRHLKQWVTAEPETKVIRIEPEHDLLILASDGLWDKVSNQEAVDIARQFCVGNNNQQPLMACKKLAQLSVSRGSLDDTSVMIIKLKHYV