Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060316.t1 | XP_003594881.1 | 94 | 497 | 30 | 0 | 1 | 497 | 1 | 497 | 2.30E-264 | 921 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060316.t1 | O49432 | 61.3 | 462 | 158 | 5 | 38 | 495 | 37 | 481 | 2.5e-153 | 543.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060316.t1 | G7INE9 | 94.0 | 497 | 30 | 0 | 1 | 497 | 1 | 497 | 1.7e-264 | 921.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055608 | MS.gene060316 | 0.82133 | 4.28E-53 | -1.69E-46 |
| MS.gene060316 | MS.gene064070 | 0.806049 | 9.93E-50 | -1.69E-46 |
| MS.gene060316 | MS.gene073453 | 0.877187 | 7.68E-69 | -1.69E-46 |
| MS.gene060316 | MS.gene30530 | 0.821709 | 3.50E-53 | -1.69E-46 |
| MS.gene060316 | MS.gene31879 | 0.814546 | 1.46E-51 | -1.69E-46 |
| MS.gene060316 | MS.gene57478 | 0.825843 | 3.76E-54 | -1.69E-46 |
| MS.gene060316 | MS.gene58678 | 0.931379 | 4.12E-94 | -1.69E-46 |
| MS.gene060316 | MS.gene58992 | 0.805532 | 1.28E-49 | -1.69E-46 |
| MS.gene060316 | MS.gene60903 | 0.803076 | 4.14E-49 | -1.69E-46 |
| MS.gene060316 | MS.gene73257 | 0.804765 | 1.85E-49 | -1.69E-46 |
| MS.gene060316 | MS.gene77188 | 0.80205 | 6.74E-49 | -1.69E-46 |
| MS.gene060316 | MS.gene77370 | 0.800169 | 1.63E-48 | -1.69E-46 |
| MS.gene060316 | MS.gene92590 | 0.802994 | 4.31E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060316.t1 | MTR_2g035760 | 95.573 | 497 | 22 | 0 | 1 | 497 | 1 | 497 | 0.0 | 918 |
| MS.gene060316.t1 | MTR_6g015785 | 69.880 | 498 | 141 | 4 | 1 | 497 | 5 | 494 | 0.0 | 652 |
| MS.gene060316.t1 | MTR_4g094732 | 46.467 | 467 | 219 | 10 | 43 | 493 | 29 | 480 | 4.48e-139 | 409 |
| MS.gene060316.t1 | MTR_2g035790 | 52.113 | 426 | 184 | 7 | 82 | 493 | 69 | 488 | 9.00e-136 | 401 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060316.t1 | AT4G20050 | 61.790 | 458 | 158 | 5 | 38 | 493 | 62 | 504 | 0.0 | 565 |
| MS.gene060316.t1 | AT4G20050 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| MS.gene060316.t1 | AT4G20050 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| MS.gene060316.t1 | AT4G20050 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| MS.gene060316.t1 | AT4G20050 | 61.522 | 460 | 160 | 5 | 38 | 495 | 37 | 481 | 0.0 | 564 |
| MS.gene060316.t1 | AT4G20050 | 64.962 | 391 | 127 | 3 | 107 | 495 | 1 | 383 | 0.0 | 516 |
| MS.gene060316.t1 | AT4G20050 | 64.962 | 391 | 127 | 3 | 107 | 495 | 1 | 383 | 0.0 | 516 |
| MS.gene060316.t1 | AT4G20040 | 49.173 | 423 | 198 | 4 | 82 | 493 | 67 | 483 | 4.82e-136 | 402 |
Find 96 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATTGTAATTGGTGTTTA+TGG | 0.186040 | 2.4:-53528079 | MS.gene060316:CDS |
| AACTCTCAAGGACCTCTTAT+TGG | 0.199279 | 2.4:-53526969 | MS.gene060316:CDS |
| GTTGTTTGTTTCATTGTAAT+TGG | 0.263362 | 2.4:-53528088 | MS.gene060316:CDS |
| TGGTGTACATTGTTACAATA+AGG | 0.274737 | 2.4:-53526654 | MS.gene060316:CDS |
| TACAATAAGGCCACTGGATT+CGG | 0.316472 | 2.4:-53526641 | MS.gene060316:CDS |
| TGCAACGGGGATGAATTTAA+AGG | 0.328386 | 2.4:-53526327 | MS.gene060316:CDS |
| AGGTGTTGAAATTGTTCATT+TGG | 0.332781 | 2.4:-53526405 | MS.gene060316:CDS |
| TTATTGGATTCAAACTTTAG+AGG | 0.335089 | 2.4:-53526953 | MS.gene060316:CDS |
| AGTTTCTTATGTATGTTTCA+TGG | 0.352507 | 2.4:+53526837 | None:intergenic |
| TGCTATCTGAATTGCCTGTT+GGG | 0.359312 | 2.4:+53527722 | None:intergenic |
| TTGATCAAGTTATTGTTGAT+AGG | 0.379420 | 2.4:-53526355 | MS.gene060316:CDS |
| ATGTTCCCAACGCTGGTTAC+CGG | 0.382500 | 2.4:+53527559 | None:intergenic |
| AGAATCATGTCTTGTTAAAG+AGG | 0.407306 | 2.4:+53527979 | None:intergenic |
| CTCTGCTGCTATAGGAATCA+TGG | 0.408545 | 2.4:-53526702 | MS.gene060316:CDS |
| GTTGATAGGAACGTTGCAAC+GGG | 0.411337 | 2.4:-53526341 | MS.gene060316:CDS |
| GCCACTGGATTCGGCGGTAC+CGG | 0.416083 | 2.4:-53526632 | MS.gene060316:CDS |
| ACATTTCTGATAGCATGATT+AGG | 0.421713 | 2.4:+53526176 | None:intergenic |
| CAGTACTCATTAAGTTCAAC+AGG | 0.423624 | 2.4:-53526209 | MS.gene060316:CDS |
| CAGAAAGTCACTCAAGTTAC+CGG | 0.424279 | 2.4:-53527578 | MS.gene060316:CDS |
| TCAATGATGTAGCCATCATT+TGG | 0.425679 | 2.4:+53527061 | None:intergenic |
| CTAGAAATATGAAGTTGAAC+AGG | 0.426194 | 2.4:+53526527 | None:intergenic |
| GCTATAGGAATCATGGTAAC+TGG | 0.427357 | 2.4:-53526695 | MS.gene060316:CDS |
| ACTTGATCAACTTGATGAAA+AGG | 0.437301 | 2.4:+53526368 | None:intergenic |
| TACATAAGAAACTCTTTCCT+TGG | 0.440272 | 2.4:-53526827 | MS.gene060316:CDS |
| ATTTCTAGTAGTTTCTTCCT+TGG | 0.441880 | 2.4:-53526512 | MS.gene060316:CDS |
| ATTGTAGATAACATGTTCTC+TGG | 0.444931 | 2.4:-53526437 | MS.gene060316:CDS |
| TCCATCAAATATCCTTCGCT+TGG | 0.449157 | 2.4:+53527658 | None:intergenic |
| TGCAAGGGAATGGAACTTCA+TGG | 0.449669 | 2.4:-53526283 | MS.gene060316:CDS |
| ATTACACATTTCACAACCAA+TGG | 0.452369 | 2.4:-53526878 | MS.gene060316:CDS |
| TCCAAGCGAAGGATATTTGA+TGG | 0.464488 | 2.4:-53527659 | MS.gene060316:CDS |
| GATGTCACGTGGTATACTCT+TGG | 0.468628 | 2.4:+53527757 | None:intergenic |
| CCTTTCGTGTTTATCGCCTC+CGG | 0.470986 | 2.4:+53526790 | None:intergenic |
| CCTACTAGGAAAATTTCTGA+TGG | 0.476121 | 2.4:-53528043 | MS.gene060316:CDS |
| ATATCCTTCGCTTGGACCGT+TGG | 0.476727 | 2.4:+53527666 | None:intergenic |
| ACCTCATCAAATGAAAATGA+TGG | 0.476960 | 2.4:-53527031 | MS.gene060316:CDS |
| GTGCTATCTGAATTGCCTGT+TGG | 0.477189 | 2.4:+53527721 | None:intergenic |
| AGTTATGTACTCAAAATTGT+AGG | 0.480837 | 2.4:+53526988 | None:intergenic |
| CGCCTCCGGCGGTTATGTGT+TGG | 0.483145 | 2.4:+53526804 | None:intergenic |
| TAAAGGCTACTGTCGCGAAA+AGG | 0.486640 | 2.4:-53526310 | MS.gene060316:CDS |
| TAAAGTTTGAATCCAATAAG+AGG | 0.490425 | 2.4:+53526957 | None:intergenic |
| ACCTCAGCTGGCTGAGAAGA+AGG | 0.497308 | 2.4:+53527920 | None:intergenic |
| TGTATGTTTCATGGCCACTT+TGG | 0.501309 | 2.4:+53526846 | None:intergenic |
| AAAAGGTCGTTGCAAGGGAA+TGG | 0.502322 | 2.4:-53526293 | MS.gene060316:CDS |
| GTATACCACGTGACATCATA+TGG | 0.507968 | 2.4:-53527751 | MS.gene060316:CDS |
| TGTTGGTTTCATGCTTCTTG+AGG | 0.510201 | 2.4:-53528110 | MS.gene060316:CDS |
| ATTGTATTATATACCTCAGC+TGG | 0.511049 | 2.4:+53527908 | None:intergenic |
| GGTGCACAAATTAATCTTGA+AGG | 0.512636 | 2.4:-53527616 | MS.gene060316:CDS |
| AAGGATTGTGAATTCTTACA+TGG | 0.512683 | 2.4:-53526576 | MS.gene060316:CDS |
| ACCGTTGGCTGCATCTGCTA+TGG | 0.521251 | 2.4:+53527681 | None:intergenic |
| CATTGTTACAATAAGGCCAC+TGG | 0.522380 | 2.4:-53526647 | MS.gene060316:CDS |
| ATGGAAGGCATCAGTAACCT+TGG | 0.524813 | 2.4:-53527640 | MS.gene060316:CDS |
| ACTTTGGACTAAAATTCCAT+TGG | 0.525845 | 2.4:+53526862 | None:intergenic |
| GTCGCGAAAAGGTCGTTGCA+AGG | 0.526188 | 2.4:-53526299 | MS.gene060316:CDS |
| TCATATGGTGCAGACCCAAC+AGG | 0.528783 | 2.4:-53527736 | MS.gene060316:CDS |
| TCAAAATTGTAGGATGATGA+AGG | 0.529691 | 2.4:+53526998 | None:intergenic |
| TCCTTCTTCTCAGCCAGCTG+AGG | 0.533497 | 2.4:-53527921 | MS.gene060316:intron |
| AGGTAGTTTCAAATAAATTC+CGG | 0.535034 | 2.4:+53526613 | None:intergenic |
| AAACACGAAAGGAATTTCTC+AGG | 0.538491 | 2.4:-53526779 | MS.gene060316:CDS |
| AGTTACCGGTAACCAGCGTT+GGG | 0.539499 | 2.4:-53527564 | MS.gene060316:CDS |
| AAGTTACCGGTAACCAGCGT+TGG | 0.543200 | 2.4:-53527565 | MS.gene060316:CDS |
| TGGATTCAAACTTTAGAGGA+GGG | 0.543439 | 2.4:-53526949 | MS.gene060316:CDS |
| TGACAGCATTATCGTTACCT+TGG | 0.545887 | 2.4:+53526741 | None:intergenic |
| GATTAATTTGTGCACCTCCA+AGG | 0.547641 | 2.4:+53527623 | None:intergenic |
| GATTCAAACTTTAGAGGAGG+GGG | 0.548301 | 2.4:-53526947 | MS.gene060316:CDS |
| ATGTTCTCTGGATCAAATCA+AGG | 0.548900 | 2.4:-53526425 | MS.gene060316:CDS |
| GCCATAGCAGATGCAGCCAA+CGG | 0.558955 | 2.4:-53527682 | MS.gene060316:CDS |
| GCTGGCTGAGAAGAAGGAGA+AGG | 0.560665 | 2.4:+53527926 | None:intergenic |
| GGAATTTATTTGAAACTACC+TGG | 0.560862 | 2.4:-53526611 | MS.gene060316:CDS |
| GAAGGTGCAAAAGAAGATGA+TGG | 0.564254 | 2.4:+53527944 | None:intergenic |
| GGATTCAAACTTTAGAGGAG+GGG | 0.565517 | 2.4:-53526948 | MS.gene060316:CDS |
| GAAAGGAATTTCTCAGGCAC+AGG | 0.566208 | 2.4:-53526773 | MS.gene060316:CDS |
| TGTTGATAGGAACGTTGCAA+CGG | 0.568090 | 2.4:-53526342 | MS.gene060316:CDS |
| TTGGATTCAAACTTTAGAGG+AGG | 0.571436 | 2.4:-53526950 | MS.gene060316:CDS |
| GCACAAATTAATCTTGAAGG+TGG | 0.580445 | 2.4:-53527613 | MS.gene060316:CDS |
| TCGCGAAAAGGTCGTTGCAA+GGG | 0.583554 | 2.4:-53526298 | MS.gene060316:CDS |
| TACCATGATGTTCCCAACGC+TGG | 0.586939 | 2.4:+53527552 | None:intergenic |
| AGCGAAGGATATTTGATGGA+AGG | 0.588639 | 2.4:-53527655 | MS.gene060316:CDS |
| CTTGGCCAACACATAACCGC+CGG | 0.589091 | 2.4:-53526809 | MS.gene060316:CDS |
| GAAGGCATCAGTAACCTTGG+AGG | 0.592934 | 2.4:-53527637 | MS.gene060316:CDS |
| ATCCTTGTTTGTGTTAAACC+AGG | 0.593807 | 2.4:+53526593 | None:intergenic |
| CGGCGGTTATGTGTTGGCCA+AGG | 0.595647 | 2.4:+53526810 | None:intergenic |
| AGAGAACATGTTATCTACAA+TGG | 0.597546 | 2.4:+53526439 | None:intergenic |
| TCCGGTACCGCCGAATCCAG+TGG | 0.602767 | 2.4:+53526631 | None:intergenic |
| GCAGCCAACGGTCCAAGCGA+AGG | 0.606415 | 2.4:-53527670 | MS.gene060316:CDS |
| GGCACAGGAATAAACATCCA+AGG | 0.625123 | 2.4:-53526758 | MS.gene060316:CDS |
| AATAAGGCCACTGGATTCGG+CGG | 0.629975 | 2.4:-53526638 | MS.gene060316:CDS |
| TACCTGGTTTAACACAAACA+AGG | 0.631189 | 2.4:-53526595 | MS.gene060316:CDS |
| AACCAGCGTTGGGAACATCA+TGG | 0.637299 | 2.4:-53527554 | MS.gene060316:intron |
| AGCAGAGAAAATTACAACAT+CGG | 0.644559 | 2.4:+53526718 | None:intergenic |
| ATTGTGTTGAAATCTATGAA+AGG | 0.648167 | 2.4:-53526479 | MS.gene060316:CDS |
| GGCCAACACATAACCGCCGG+AGG | 0.651132 | 2.4:-53526806 | MS.gene060316:CDS |
| TTCGTGTTTATCGCCTCCGG+CGG | 0.651957 | 2.4:+53526793 | None:intergenic |
| CTGCACCATATGATGTCACG+TGG | 0.660523 | 2.4:+53527746 | None:intergenic |
| CCGGAGGCGATAAACACGAA+AGG | 0.669288 | 2.4:-53526790 | MS.gene060316:CDS |
| ACACAATATTCGCATCACCA+AGG | 0.694010 | 2.4:+53526495 | None:intergenic |
| TTGATAGGAACGTTGCAACG+GGG | 0.722305 | 2.4:-53526340 | MS.gene060316:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAATTATTTGACAAT+TGG | - | chr2.4:53526851-53526870 | MS.gene060316:CDS | 15.0% |
| !! | TTTCATACTGTAAAAAAAAA+AGG | + | chr2.4:53526812-53526831 | None:intergenic | 15.0% |
| !!! | TTTTTGTTGTTTTAATTTGA+TGG | - | chr2.4:53527090-53527109 | MS.gene060316:CDS | 15.0% |
| !! | AAGTTTGTCATATTTATTGT+CGG | - | chr2.4:53526389-53526408 | MS.gene060316:CDS | 20.0% |
| !! | ACAATAAATATGACAAACTT+AGG | + | chr2.4:53526389-53526408 | None:intergenic | 20.0% |
| !! | ATTGTCTCAAAAATTGAATT+TGG | + | chr2.4:53526903-53526922 | None:intergenic | 20.0% |
| !!! | ATAATTAGTTTTTCTACAGT+TGG | + | chr2.4:53526843-53526862 | None:intergenic | 20.0% |
| !!! | TAATTTTAGTAGAGAATACT+AGG | - | chr2.4:53526342-53526361 | MS.gene060316:CDS | 20.0% |
| !!! | TTTAGTATTTTTAGTCATGA+TGG | - | chr2.4:53526932-53526951 | MS.gene060316:CDS | 20.0% |
| ! | AAACTTAGGTACAATGTTAT+AGG | + | chr2.4:53526375-53526394 | None:intergenic | 25.0% |
| ! | AGGTAGTTTCAAATAAATTC+CGG | + | chr2.4:53527608-53527627 | None:intergenic | 25.0% |
| ! | AGTTATGTACTCAAAATTGT+AGG | + | chr2.4:53527233-53527252 | None:intergenic | 25.0% |
| ! | AGTTTCTTATGTATGTTTCA+TGG | + | chr2.4:53527384-53527403 | None:intergenic | 25.0% |
| ! | ATTGTGTTGAAATCTATGAA+AGG | - | chr2.4:53527739-53527758 | MS.gene060316:CDS | 25.0% |
| ! | GTTGTTTGTTTCATTGTAAT+TGG | - | chr2.4:53526130-53526149 | MS.gene060316:CDS | 25.0% |
| ! | TAAAGTTTGAATCCAATAAG+AGG | + | chr2.4:53527264-53527283 | None:intergenic | 25.0% |
| ! | TTATTGGATTCAAACTTTAG+AGG | - | chr2.4:53527265-53527284 | MS.gene060316:intron | 25.0% |
| ! | TTGATCAAGTTATTGTTGAT+AGG | - | chr2.4:53527863-53527882 | MS.gene060316:intron | 25.0% |
| !! | ATAGTCAATTCTCATTTTCT+TGG | + | chr2.4:53526980-53526999 | None:intergenic | 25.0% |
| !! | ATGACAAGAAAATGTTTTGT+TGG | - | chr2.4:53526091-53526110 | MS.gene060316:CDS | 25.0% |
| !! | TGAACATTTTTGATAAGGTT+AGG | + | chr2.4:53527991-53528010 | None:intergenic | 25.0% |
| !! | TTCATTGTAATTGGTGTTTA+TGG | - | chr2.4:53526139-53526158 | MS.gene060316:CDS | 25.0% |
| !!! | AAAATCATCTGAAGCTTTTA+TGG | + | chr2.4:53527137-53527156 | None:intergenic | 25.0% |
| !!! | AGTACTGAACATTTTTGATA+AGG | + | chr2.4:53527996-53528015 | None:intergenic | 25.0% |
| !!! | GATGATTTTTTTGTTGTGTA+GGG | - | chr2.4:53526428-53526447 | MS.gene060316:CDS | 25.0% |
| !!! | TCTATGAAAGGTGTTTTAAA+TGG | - | chr2.4:53527751-53527770 | MS.gene060316:CDS | 25.0% |
| !!! | TGATGATTTTTTTGTTGTGT+AGG | - | chr2.4:53526427-53526446 | MS.gene060316:CDS | 25.0% |
| AAGGATTGTGAATTCTTACA+TGG | - | chr2.4:53527642-53527661 | MS.gene060316:CDS | 30.0% | |
| ACATTTCTGATAGCATGATT+AGG | + | chr2.4:53528045-53528064 | None:intergenic | 30.0% | |
| ACCTCATCAAATGAAAATGA+TGG | - | chr2.4:53527187-53527206 | MS.gene060316:intron | 30.0% | |
| ACTTGATCAACTTGATGAAA+AGG | + | chr2.4:53527853-53527872 | None:intergenic | 30.0% | |
| ACTTTGGACTAAAATTCCAT+TGG | + | chr2.4:53527359-53527378 | None:intergenic | 30.0% | |
| AGAGAACATGTTATCTACAA+TGG | + | chr2.4:53527782-53527801 | None:intergenic | 30.0% | |
| AGCAGAGAAAATTACAACAT+CGG | + | chr2.4:53527503-53527522 | None:intergenic | 30.0% | |
| ATTACACATTTCACAACCAA+TGG | - | chr2.4:53527340-53527359 | MS.gene060316:intron | 30.0% | |
| ATTGTAGATAACATGTTCTC+TGG | - | chr2.4:53527781-53527800 | MS.gene060316:intron | 30.0% | |
| ATTGTATTATATACCTCAGC+TGG | + | chr2.4:53526313-53526332 | None:intergenic | 30.0% | |
| CTAGAAATATGAAGTTGAAC+AGG | + | chr2.4:53527694-53527713 | None:intergenic | 30.0% | |
| GTGACAAAAATTTACCTACT+AGG | - | chr2.4:53526161-53526180 | MS.gene060316:CDS | 30.0% | |
| TACATAAGAAACTCTTTCCT+TGG | - | chr2.4:53527391-53527410 | MS.gene060316:intron | 30.0% | |
| TCAAAATTGTAGGATGATGA+AGG | + | chr2.4:53527223-53527242 | None:intergenic | 30.0% | |
| TGGTGTACATTGTTACAATA+AGG | - | chr2.4:53527564-53527583 | MS.gene060316:CDS | 30.0% | |
| TTGATGGAAAAACAGATACA+TGG | - | chr2.4:53527106-53527125 | MS.gene060316:intron | 30.0% | |
| ! | AGAATCATGTCTTGTTAAAG+AGG | + | chr2.4:53526242-53526261 | None:intergenic | 30.0% |
| ! | GGAATTTATTTGAAACTACC+TGG | - | chr2.4:53527607-53527626 | MS.gene060316:CDS | 30.0% |
| ! | TCAGATGATTTTCCAAATGA+TGG | - | chr2.4:53527145-53527164 | MS.gene060316:intron | 30.0% |
| ! | TCCATCATTTTCATTTGATG+AGG | + | chr2.4:53527191-53527210 | None:intergenic | 30.0% |
| !! | AATGGAATTTTAGTCCAAAG+TGG | - | chr2.4:53527358-53527377 | MS.gene060316:intron | 30.0% |
| !! | AGGTGTTGAAATTGTTCATT+TGG | - | chr2.4:53527813-53527832 | MS.gene060316:intron | 30.0% |
| !! | ATTTCTAGTAGTTTCTTCCT+TGG | - | chr2.4:53527706-53527725 | MS.gene060316:CDS | 30.0% |
| !! | TTTTGAGTACATAACTCTCA+AGG | - | chr2.4:53527237-53527256 | MS.gene060316:intron | 30.0% |
| !!! | GGAAGTGTTTTAAGACTTTA+TGG | - | chr2.4:53526872-53526891 | MS.gene060316:CDS | 30.0% |
| !!! | TGTTTTAAGACTTTATGGCT+AGG | - | chr2.4:53526877-53526896 | MS.gene060316:CDS | 30.0% |
| AAACACGAAAGGAATTTCTC+AGG | - | chr2.4:53527439-53527458 | MS.gene060316:intron | 35.0% | |
| AGCAAATGAAACAATTTCGC+AGG | + | chr2.4:53526694-53526713 | None:intergenic | 35.0% | |
| ATGGAAAAACAGATACATGG+AGG | - | chr2.4:53527109-53527128 | MS.gene060316:intron | 35.0% | |
| ATGTTCTCTGGATCAAATCA+AGG | - | chr2.4:53527793-53527812 | MS.gene060316:intron | 35.0% | |
| CAGTACTCATTAAGTTCAAC+AGG | - | chr2.4:53528009-53528028 | MS.gene060316:CDS | 35.0% | |
| CCTACTAGGAAAATTTCTGA+TGG | - | chr2.4:53526175-53526194 | MS.gene060316:CDS | 35.0% | |
| GCACAAATTAATCTTGAAGG+TGG | - | chr2.4:53526605-53526624 | MS.gene060316:CDS | 35.0% | |
| GGTGCACAAATTAATCTTGA+AGG | - | chr2.4:53526602-53526621 | MS.gene060316:CDS | 35.0% | |
| TACCTGGTTTAACACAAACA+AGG | - | chr2.4:53527623-53527642 | MS.gene060316:CDS | 35.0% | |
| TCAATGATGTAGCCATCATT+TGG | + | chr2.4:53527160-53527179 | None:intergenic | 35.0% | |
| ! | ATCCTTGTTTGTGTTAAACC+AGG | + | chr2.4:53527628-53527647 | None:intergenic | 35.0% |
| ! | CCATCAGAAATTTTCCTAGT+AGG | + | chr2.4:53526178-53526197 | None:intergenic | 35.0% |
| ! | GTAATTTTCTCTGCTGCTAT+AGG | - | chr2.4:53527508-53527527 | MS.gene060316:intron | 35.0% |
| ! | TGGATTCAAACTTTAGAGGA+GGG | - | chr2.4:53527269-53527288 | MS.gene060316:intron | 35.0% |
| ! | TTGGATTCAAACTTTAGAGG+AGG | - | chr2.4:53527268-53527287 | MS.gene060316:intron | 35.0% |
| AACTCTCAAGGACCTCTTAT+TGG | - | chr2.4:53527249-53527268 | MS.gene060316:intron | 40.0% | |
| ACACAATATTCGCATCACCA+AGG | + | chr2.4:53527726-53527745 | None:intergenic | 40.0% | |
| AGCGAAGGATATTTGATGGA+AGG | - | chr2.4:53526563-53526582 | MS.gene060316:CDS | 40.0% | |
| CAGAAAGTCACTCAAGTTAC+CGG | - | chr2.4:53526640-53526659 | MS.gene060316:CDS | 40.0% | |
| CATTGTTACAATAAGGCCAC+TGG | - | chr2.4:53527571-53527590 | MS.gene060316:CDS | 40.0% | |
| GCTATAGGAATCATGGTAAC+TGG | - | chr2.4:53527523-53527542 | MS.gene060316:intron | 40.0% | |
| GTATACCACGTGACATCATA+TGG | - | chr2.4:53526467-53526486 | MS.gene060316:CDS | 40.0% | |
| TACAATAAGGCCACTGGATT+CGG | - | chr2.4:53527577-53527596 | MS.gene060316:CDS | 40.0% | |
| TCCAAGCGAAGGATATTTGA+TGG | - | chr2.4:53526559-53526578 | MS.gene060316:CDS | 40.0% | |
| TCCATCAAATATCCTTCGCT+TGG | + | chr2.4:53526563-53526582 | None:intergenic | 40.0% | |
| TGACAGCATTATCGTTACCT+TGG | + | chr2.4:53527480-53527499 | None:intergenic | 40.0% | |
| TGCAACGGGGATGAATTTAA+AGG | - | chr2.4:53527891-53527910 | MS.gene060316:intron | 40.0% | |
| TGCTATCTGAATTGCCTGTT+GGG | + | chr2.4:53526499-53526518 | None:intergenic | 40.0% | |
| TGTATGTTTCATGGCCACTT+TGG | + | chr2.4:53527375-53527394 | None:intergenic | 40.0% | |
| ! | ACTGTAGAAACTGATTCTCG+AGG | - | chr2.4:53526756-53526775 | MS.gene060316:CDS | 40.0% |
| ! | AGTCATGATGGTGAAGTAGT+TGG | - | chr2.4:53526944-53526963 | MS.gene060316:CDS | 40.0% |
| ! | GAAGGTGCAAAAGAAGATGA+TGG | + | chr2.4:53526277-53526296 | None:intergenic | 40.0% |
| ! | GATTCAAACTTTAGAGGAGG+GGG | - | chr2.4:53527271-53527290 | MS.gene060316:intron | 40.0% |
| ! | GGATTCAAACTTTAGAGGAG+GGG | - | chr2.4:53527270-53527289 | MS.gene060316:intron | 40.0% |
| ! | GGTCAAGCAAACACATTTTC+TGG | - | chr2.4:53527544-53527563 | MS.gene060316:intron | 40.0% |
| ! | TGTTGATAGGAACGTTGCAA+CGG | - | chr2.4:53527876-53527895 | MS.gene060316:intron | 40.0% |
| !! | GATTAATTTGTGCACCTCCA+AGG | + | chr2.4:53526598-53526617 | None:intergenic | 40.0% |
| !! | TGTTGGTTTCATGCTTCTTG+AGG | - | chr2.4:53526108-53526127 | MS.gene060316:CDS | 40.0% |
| AAAAGGTCGTTGCAAGGGAA+TGG | - | chr2.4:53527925-53527944 | MS.gene060316:CDS | 45.0% | |
| CTCTGCTGCTATAGGAATCA+TGG | - | chr2.4:53527516-53527535 | MS.gene060316:intron | 45.0% | |
| GAAAGGAATTTCTCAGGCAC+AGG | - | chr2.4:53527445-53527464 | MS.gene060316:intron | 45.0% | |
| GATGTCACGTGGTATACTCT+TGG | + | chr2.4:53526464-53526483 | None:intergenic | 45.0% | |
| GGCACAGGAATAAACATCCA+AGG | - | chr2.4:53527460-53527479 | MS.gene060316:intron | 45.0% | |
| GTGCTATCTGAATTGCCTGT+TGG | + | chr2.4:53526500-53526519 | None:intergenic | 45.0% | |
| TAAAGGCTACTGTCGCGAAA+AGG | - | chr2.4:53527908-53527927 | MS.gene060316:intron | 45.0% | |
| TGCAAGGGAATGGAACTTCA+TGG | - | chr2.4:53527935-53527954 | MS.gene060316:CDS | 45.0% | |
| TTGATAGGAACGTTGCAACG+GGG | - | chr2.4:53527878-53527897 | MS.gene060316:intron | 45.0% | |
| ! | GTTGATAGGAACGTTGCAAC+GGG | - | chr2.4:53527877-53527896 | MS.gene060316:intron | 45.0% |
| !! | ATGGAAGGCATCAGTAACCT+TGG | - | chr2.4:53526578-53526597 | MS.gene060316:CDS | 45.0% |
| AAGTTACCGGTAACCAGCGT+TGG | - | chr2.4:53526653-53526672 | MS.gene060316:CDS | 50.0% | |
| AATAAGGCCACTGGATTCGG+CGG | - | chr2.4:53527580-53527599 | MS.gene060316:CDS | 50.0% | |
| AGTTACCGGTAACCAGCGTT+GGG | - | chr2.4:53526654-53526673 | MS.gene060316:CDS | 50.0% | |
| ATATCCTTCGCTTGGACCGT+TGG | + | chr2.4:53526555-53526574 | None:intergenic | 50.0% | |
| CCTTTCGTGTTTATCGCCTC+CGG | + | chr2.4:53527431-53527450 | None:intergenic | 50.0% | |
| CTGCACCATATGATGTCACG+TGG | + | chr2.4:53526475-53526494 | None:intergenic | 50.0% | |
| TACCATGATGTTCCCAACGC+TGG | + | chr2.4:53526669-53526688 | None:intergenic | 50.0% | |
| TCATATGGTGCAGACCCAAC+AGG | - | chr2.4:53526482-53526501 | MS.gene060316:CDS | 50.0% | |
| TCGCGAAAAGGTCGTTGCAA+GGG | - | chr2.4:53527920-53527939 | MS.gene060316:intron | 50.0% | |
| ! | AACCAGCGTTGGGAACATCA+TGG | - | chr2.4:53526664-53526683 | MS.gene060316:CDS | 50.0% |
| ! | ATGTTCCCAACGCTGGTTAC+CGG | + | chr2.4:53526662-53526681 | None:intergenic | 50.0% |
| !! | CGCTGCGAATGTTTTTGTCG+CGG | - | chr2.4:53528104-53528123 | MS.gene060316:CDS | 50.0% |
| !! | GAAGGCATCAGTAACCTTGG+AGG | - | chr2.4:53526581-53526600 | MS.gene060316:CDS | 50.0% |
| !! | TGCGAATGTTTTTGTCGCGG+TGG | - | chr2.4:53528107-53528126 | MS.gene060316:CDS | 50.0% |
| ACCTCAGCTGGCTGAGAAGA+AGG | + | chr2.4:53526301-53526320 | None:intergenic | 55.0% | |
| CCGGAGGCGATAAACACGAA+AGG | - | chr2.4:53527428-53527447 | MS.gene060316:intron | 55.0% | |
| CTTGGCCAACACATAACCGC+CGG | - | chr2.4:53527409-53527428 | MS.gene060316:intron | 55.0% | |
| GCCATAGCAGATGCAGCCAA+CGG | - | chr2.4:53526536-53526555 | MS.gene060316:CDS | 55.0% | |
| GCTGGCTGAGAAGAAGGAGA+AGG | + | chr2.4:53526295-53526314 | None:intergenic | 55.0% | |
| GTCGCGAAAAGGTCGTTGCA+AGG | - | chr2.4:53527919-53527938 | MS.gene060316:intron | 55.0% | |
| TCCTTCTTCTCAGCCAGCTG+AGG | - | chr2.4:53526297-53526316 | MS.gene060316:CDS | 55.0% | |
| TTCGTGTTTATCGCCTCCGG+CGG | + | chr2.4:53527428-53527447 | None:intergenic | 55.0% | |
| ! | ACCGTTGGCTGCATCTGCTA+TGG | + | chr2.4:53526540-53526559 | None:intergenic | 55.0% |
| ! | CGGCGGTTATGTGTTGGCCA+AGG | + | chr2.4:53527411-53527430 | None:intergenic | 60.0% |
| CGCCTCCGGCGGTTATGTGT+TGG | + | chr2.4:53527417-53527436 | None:intergenic | 65.0% | |
| GCAGCCAACGGTCCAAGCGA+AGG | - | chr2.4:53526548-53526567 | MS.gene060316:CDS | 65.0% | |
| GCCACTGGATTCGGCGGTAC+CGG | - | chr2.4:53527586-53527605 | MS.gene060316:CDS | 65.0% | |
| GGCCAACACATAACCGCCGG+AGG | - | chr2.4:53527412-53527431 | MS.gene060316:intron | 65.0% | |
| TCCGGTACCGCCGAATCCAG+TGG | + | chr2.4:53527590-53527609 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 53526091 | 53528149 | 53526091 | ID=MS.gene060316 |
| chr2.4 | mRNA | 53526091 | 53528149 | 53526091 | ID=MS.gene060316.t1;Parent=MS.gene060316 |
| chr2.4 | exon | 53527922 | 53528149 | 53527922 | ID=MS.gene060316.t1.exon1;Parent=MS.gene060316.t1 |
| chr2.4 | CDS | 53527922 | 53528149 | 53527922 | ID=cds.MS.gene060316.t1;Parent=MS.gene060316.t1 |
| chr2.4 | exon | 53527555 | 53527791 | 53527555 | ID=MS.gene060316.t1.exon2;Parent=MS.gene060316.t1 |
| chr2.4 | CDS | 53527555 | 53527791 | 53527555 | ID=cds.MS.gene060316.t1;Parent=MS.gene060316.t1 |
| chr2.4 | exon | 53526091 | 53527119 | 53526091 | ID=MS.gene060316.t1.exon3;Parent=MS.gene060316.t1 |
| chr2.4 | CDS | 53526091 | 53527119 | 53526091 | ID=cds.MS.gene060316.t1;Parent=MS.gene060316.t1 |
| Gene Sequence |
| Protein sequence |
