AlfalfaGEDB | MS.gene77188

M. sativa cultivar XinJiangDaYe / MS.gene77188

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77188.t1	XP_003595828.2	97.4	154	3	1	1	153	1	154	5.00E-72	280.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77188.t1	A2Q3C1	97.4	154	3	1	1	153	1	154	3.6e-72	280.4

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049501	MS.gene77188	0.831228	1.88E-55	-1.69E-46
MS.gene050787	MS.gene77188	0.817625	2.99E-52	-1.69E-46
MS.gene050844	MS.gene77188	0.822581	2.19E-53	-1.69E-46
MS.gene051265	MS.gene77188	0.857516	1.55E-62	-1.69E-46
MS.gene051388	MS.gene77188	0.826245	3.01E-54	-1.69E-46
MS.gene052020	MS.gene77188	0.817027	4.08E-52	-1.69E-46
MS.gene052042	MS.gene77188	0.816446	5.51E-52	-1.69E-46
MS.gene052561	MS.gene77188	0.807965	3.91E-50	-1.69E-46
MS.gene052611	MS.gene77188	0.808684	2.74E-50	-1.69E-46
MS.gene052863	MS.gene77188	0.817273	3.59E-52	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77188.t1	MTR_2g062280	97.403	154	3	1	1	153	1	154	4.27e-107	302

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene77188.t1	AT2G31930	33.544	158	77	7	2	151	4	141	3.62e-11	57.8

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Find 26 sgRNAs with CRISPR-Local

Find 31 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGAAGTGTAGTAGTGATGA+AGG	0.488228	2.4:+31594199	MS.gene77188:CDS
ACCATTCCTGAGGTGAAAGA+AGG	0.519436	2.4:+31594109	MS.gene77188:CDS
ACCTTCTTTCACCTCAGGAA+TGG	0.551885	2.4:-31594110	None:intergenic
ACTTGAAACTACCATTCCTG+AGG	0.625626	2.4:+31594099	MS.gene77188:CDS
ACTTGTTAGGGTGCAACAAA+AGG	0.473235	2.4:+31594282	MS.gene77188:CDS
AGAAACAACTTCAACTTGTT+AGG	0.273115	2.4:+31594269	MS.gene77188:CDS
AGCAAAGGAAGAAACTCGCT+CGG	0.605530	2.4:+31594226	MS.gene77188:CDS
AGCTTGAAACAATTGATTGT+AGG	0.428759	2.4:+31594157	MS.gene77188:CDS
AGGTTTGAAGTTTAAGAAGT+TGG	0.481500	2.4:+31594315	MS.gene77188:CDS
AGTGATGAAGGTGAAAGCAA+AGG	0.564280	2.4:+31594211	MS.gene77188:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGCTTGAAACAATTGATTGT+AGG	+	chr2.4:31594157-31594176	MS.gene77188:CDS	30.0%
CAATGAAAAACCAATCTCAA+AGG	+	chr2.4:31594054-31594073	MS.gene77188:CDS	30.0%
TAACTATGTCAAGAAGAACA+AGG	+	chr2.4:31594014-31594033	MS.gene77188:CDS	30.0%
TAAGCTGATAACTTGAAAAC+AGG	-	chr2.4:31594418-31594437	None:intergenic	30.0%
TTGACATAGTTATGTCATAG+TGG	-	chr2.4:31594006-31594025	None:intergenic	30.0%
CAACAAAAGGACAATCTTCA+AGG	+	chr2.4:31594295-31594314	MS.gene77188:CDS	35.0%
ACTTGAAACTACCATTCCTG+AGG	+	chr2.4:31594099-31594118	MS.gene77188:CDS	40.0%
AGTGATGAAGGTGAAAGCAA+AGG	+	chr2.4:31594211-31594230	MS.gene77188:CDS	40.0%
ATCCTCATTTAGGTGATGCT+GGG	+	chr2.4:31594386-31594405	MS.gene77188:CDS	40.0%
CTCAAAGGTTGAAACACCTA+AGG	+	chr2.4:31594069-31594088	MS.gene77188:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	31593977	31594438	31593977	ID=MS.gene77188
chr2.4	mRNA	31593977	31594438	31593977	ID=MS.gene77188.t1;Parent=MS.gene77188
chr2.4	exon	31593977	31594438	31593977	ID=MS.gene77188.t1.exon1;Parent=MS.gene77188.t1
chr2.4	CDS	31593977	31594438	31593977	ID=cds.MS.gene77188.t1;Parent=MS.gene77188.t1

Gene Sequence

>MS.gene77188

ATGGAGGTTCAATCCTCGACGAAACGCCACTATGACATAACTATGTCAAGAAGAACAAGGAAACAACAATCATTAGCCAATGAAAAACCAATCTCAAAGGTTGAAACACCTAAGGATGTTTCACTTGAAACTACCATTCCTGAGGTGAAAGAAGGTAATGAGAATAATATTGATCACAAAAGCTTGAAACAATTGATTGTAGGAGAAGAGAAAGAATCAACAAAGAAGTGTAGTAGTGATGAAGGTGAAAGCAAAGGAAGAAACTCGCTCGGTGAACATTTTACCGAGGAAGAGAAACAACTTCAACTTGTTAGGGTGCAACAAAAGGACAATCTTCAAGGTTTGAAGTTTAAGAAGTTGGTTCGTCGTTATGCTAAAGTTTTGGGGCATATGATGAAGTCTAAGCGTGATCCTCATTTAGGTGATGCTGGGAAAAAACCTGTTTTCAAGTTATCAGCTTAG

Protein sequence

>MS.gene77188.t1

MEVQSSTKRHYDITMSRRTRKQQSLANEKPISKVETPKDVSLETTIPEVKEGNENNIDHKSLKQLIVGEEKESTKKCSSDEGESKGRNSLGEHFTEEEKQLQLVRVQQKDNLQGLKFKKLVRRYAKVLGHMMKSKRDPHLGDAGKKPVFKLSA