Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58992.t1 | GAU10313.1 | 61 | 513 | 191 | 4 | 156 | 665 | 10 | 516 | 2.10E-162 | 582.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58992.t1 | Q7VG78 | 40.5 | 153 | 91 | 0 | 3 | 155 | 794 | 946 | 2.5e-31 | 138.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58992.t1 | A0A1B5Z879 | 61.0 | 513 | 191 | 4 | 156 | 665 | 10 | 516 | 1.5e-162 | 582.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049272 | MS.gene58992 | 0.806107 | 9.66E-50 | -1.69E-46 |
| MS.gene049850 | MS.gene58992 | 0.813631 | 2.32E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene58992 | 0.807613 | 4.64E-50 | -1.69E-46 |
| MS.gene051265 | MS.gene58992 | 0.811658 | 6.27E-51 | -1.69E-46 |
| MS.gene051388 | MS.gene58992 | 0.844109 | 9.26E-59 | -1.69E-46 |
| MS.gene051719 | MS.gene58992 | 0.823139 | 1.63E-53 | -1.69E-46 |
| MS.gene051720 | MS.gene58992 | 0.822909 | 1.84E-53 | -1.69E-46 |
| MS.gene052519 | MS.gene58992 | 0.80637 | 8.50E-50 | -1.69E-46 |
| MS.gene052561 | MS.gene58992 | 0.828036 | 1.12E-54 | -1.69E-46 |
| MS.gene052582 | MS.gene58992 | 0.810312 | 1.23E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene58992 | 0.803041 | 4.21E-49 | -1.69E-46 |
| MS.gene053164 | MS.gene58992 | 0.84096 | 6.34E-58 | -1.69E-46 |
| MS.gene053221 | MS.gene58992 | 0.808876 | 2.50E-50 | -1.69E-46 |
| MS.gene054584 | MS.gene58992 | 0.801005 | 1.10E-48 | -1.69E-46 |
| MS.gene054775 | MS.gene58992 | 0.805744 | 1.15E-49 | -1.69E-46 |
| MS.gene054801 | MS.gene58992 | 0.826981 | 2.01E-54 | -1.69E-46 |
| MS.gene055465 | MS.gene58992 | 0.817562 | 3.09E-52 | -1.69E-46 |
| MS.gene055466 | MS.gene58992 | 0.834929 | 2.25E-56 | -1.69E-46 |
| MS.gene055468 | MS.gene58992 | 0.818805 | 1.62E-52 | -1.69E-46 |
| MS.gene055608 | MS.gene58992 | 0.85341 | 2.43E-61 | -1.69E-46 |
| MS.gene055818 | MS.gene58992 | 0.819142 | 1.36E-52 | -1.69E-46 |
| MS.gene055926 | MS.gene58992 | 0.804854 | 1.77E-49 | -1.69E-46 |
| MS.gene056174 | MS.gene58992 | 0.807863 | 4.11E-50 | -1.69E-46 |
| MS.gene057444 | MS.gene58992 | 0.810518 | 1.11E-50 | -1.69E-46 |
| MS.gene058339 | MS.gene58992 | 0.810654 | 1.04E-50 | -1.69E-46 |
| MS.gene058625 | MS.gene58992 | 0.82364 | 1.24E-53 | -1.69E-46 |
| MS.gene059272 | MS.gene58992 | 0.834993 | 2.17E-56 | -1.69E-46 |
| MS.gene059625 | MS.gene58992 | 0.80245 | 5.58E-49 | -1.69E-46 |
| MS.gene060316 | MS.gene58992 | 0.805532 | 1.28E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene58992 | 0.808898 | 2.47E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58992.t1 | MTR_0009s0230 | 94.631 | 149 | 8 | 0 | 7 | 155 | 121 | 269 | 8.27e-99 | 305 |
| MS.gene58992.t1 | MTR_0009s0230 | 95.238 | 147 | 7 | 0 | 9 | 155 | 122 | 268 | 5.43e-98 | 303 |
| MS.gene58992.t1 | MTR_8g066040 | 62.651 | 166 | 45 | 1 | 7 | 155 | 125 | 290 | 3.33e-70 | 231 |
| MS.gene58992.t1 | MTR_4g130880 | 51.049 | 143 | 70 | 0 | 11 | 153 | 161 | 303 | 1.60e-48 | 175 |
| MS.gene58992.t1 | MTR_4g007070 | 48.428 | 159 | 76 | 1 | 3 | 155 | 136 | 294 | 1.72e-48 | 174 |
| MS.gene58992.t1 | MTR_2g063510 | 44.966 | 149 | 80 | 1 | 7 | 155 | 210 | 356 | 1.19e-42 | 159 |
| MS.gene58992.t1 | MTR_3g111690 | 44.595 | 148 | 81 | 1 | 7 | 153 | 137 | 284 | 1.16e-40 | 152 |
| MS.gene58992.t1 | MTR_8g447000 | 40.268 | 149 | 87 | 1 | 7 | 155 | 204 | 350 | 2.78e-39 | 149 |
| MS.gene58992.t1 | MTR_4g130880 | 44.086 | 93 | 52 | 0 | 11 | 103 | 161 | 253 | 7.38e-23 | 99.0 |
| MS.gene58992.t1 | MTR_3g094110 | 26.259 | 278 | 151 | 6 | 204 | 479 | 2 | 227 | 4.52e-19 | 88.2 |
| MS.gene58992.t1 | MTR_2g063510 | 39.815 | 108 | 62 | 2 | 7 | 114 | 210 | 314 | 4.99e-19 | 89.0 |
| MS.gene58992.t1 | MTR_3g012220 | 33.898 | 177 | 102 | 6 | 156 | 324 | 15 | 184 | 1.91e-17 | 81.3 |
| MS.gene58992.t1 | MTR_8g447000 | 37.755 | 98 | 59 | 1 | 7 | 104 | 204 | 299 | 4.43e-17 | 83.2 |
| MS.gene58992.t1 | MTR_1g050915 | 36.607 | 112 | 68 | 1 | 208 | 319 | 3 | 111 | 8.24e-14 | 72.4 |
| MS.gene58992.t1 | MTR_6g472120 | 40.000 | 100 | 59 | 1 | 211 | 310 | 6 | 104 | 8.82e-14 | 68.2 |
| MS.gene58992.t1 | MTR_0029s0220 | 33.333 | 114 | 73 | 1 | 184 | 294 | 15 | 128 | 4.83e-13 | 67.0 |
| MS.gene58992.t1 | MTR_0042s0120 | 37.624 | 101 | 60 | 1 | 208 | 308 | 3 | 100 | 8.29e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58992.t1 | AT1G13635 | 61.074 | 149 | 58 | 0 | 7 | 155 | 124 | 272 | 1.59e-63 | 213 |
| MS.gene58992.t1 | AT1G13635 | 61.074 | 149 | 58 | 0 | 7 | 155 | 124 | 272 | 1.59e-63 | 213 |
| MS.gene58992.t1 | AT5G57970 | 47.619 | 147 | 77 | 0 | 7 | 153 | 163 | 309 | 8.85e-48 | 172 |
| MS.gene58992.t1 | AT5G57970 | 47.619 | 147 | 77 | 0 | 7 | 153 | 163 | 309 | 8.85e-48 | 172 |
| MS.gene58992.t1 | AT1G75090 | 48.299 | 147 | 76 | 0 | 7 | 153 | 128 | 274 | 7.56e-47 | 169 |
| MS.gene58992.t1 | AT1G15970 | 46.980 | 149 | 79 | 0 | 7 | 155 | 154 | 302 | 8.87e-44 | 161 |
| MS.gene58992.t1 | AT1G15970 | 46.980 | 149 | 79 | 0 | 7 | 155 | 154 | 302 | 8.87e-44 | 161 |
| MS.gene58992.t1 | AT1G80850 | 48.322 | 149 | 73 | 2 | 7 | 153 | 143 | 289 | 3.13e-43 | 159 |
| MS.gene58992.t1 | AT5G44680 | 41.611 | 149 | 85 | 1 | 7 | 155 | 173 | 319 | 6.96e-40 | 150 |
| MS.gene58992.t1 | AT3G12710 | 38.926 | 149 | 89 | 1 | 7 | 155 | 131 | 277 | 2.42e-36 | 139 |
Find 164 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCGCGGCTTTAGATATT+TGG | 0.131071 | 5.3:-36746183 | MS.gene58992:CDS |
| GACTTCCTTCTCCTCCATTT+TGG | 0.156245 | 5.3:+36746830 | None:intergenic |
| TCAAATTTGTCCACCGTTAC+AGG | 0.199009 | 5.3:+36742932 | None:intergenic |
| TTCTTTGGTGCTTGGTTTGA+TGG | 0.207561 | 5.3:+36741957 | None:intergenic |
| TCCTTACATTGTTTCCAAAA+TGG | 0.227659 | 5.3:-36746844 | MS.gene58992:CDS |
| TTGCTTATGGCATCTGCTTT+TGG | 0.249904 | 5.3:+36746215 | None:intergenic |
| CTTTAATAAGTCCTTGCTTA+TGG | 0.266645 | 5.3:+36746202 | None:intergenic |
| CTACAGATTAGGAGGGAATA+TGG | 0.275504 | 5.3:-36746326 | MS.gene58992:intron |
| GAAAGACTTCTCGGAGACTA+TGG | 0.285519 | 5.3:-36742998 | MS.gene58992:CDS |
| AACTCCCAATCCGCCTTCTT+TGG | 0.293233 | 5.3:+36741942 | None:intergenic |
| CCTGTGGTTGAGTTAAATTA+AGG | 0.306727 | 5.3:+36742234 | None:intergenic |
| TCCCTCTTTCTGTTGGAAAC+TGG | 0.312679 | 5.3:+36742613 | None:intergenic |
| ACCTCTACTTCAATTAGTTC+AGG | 0.321082 | 5.3:+36741651 | None:intergenic |
| ATTCAAGAGATGTTCCATTA+AGG | 0.327044 | 5.3:-36746241 | MS.gene58992:CDS |
| CAAGTTCTTGATACAGCTTC+TGG | 0.327167 | 5.3:-36742470 | MS.gene58992:CDS |
| CTCCACTTGGGTTGCATCCA+TGG | 0.339790 | 5.3:+36742133 | None:intergenic |
| GATCATTCAGTAGCTATATA+TGG | 0.347532 | 5.3:-36746304 | MS.gene58992:CDS |
| TGGTAATGGTCAACCTGTTT+CGG | 0.351872 | 5.3:+36742960 | None:intergenic |
| CGAGAAGTCTTTCTTCAGGC+TGG | 0.358108 | 5.3:+36743008 | None:intergenic |
| CCTGTTTCGGTTTCTGTCAC+GGG | 0.363905 | 5.3:+36742973 | None:intergenic |
| AGAATTTCATGACGATTGTT+GGG | 0.365513 | 5.3:-36747389 | MS.gene58992:CDS |
| AATCCGCCTTCTTTGGTGCT+TGG | 0.367253 | 5.3:+36741949 | None:intergenic |
| ACAGAAAGAGGGAGAGTCCT+TGG | 0.371710 | 5.3:-36742603 | MS.gene58992:CDS |
| GTTCGAGCTGCTTGCATTGT+CGG | 0.373218 | 5.3:-36747037 | MS.gene58992:CDS |
| AATCTGCTTACCAGTGAGTA+TGG | 0.374574 | 5.3:+36742298 | None:intergenic |
| GGATTATATGTATTTGCAAA+AGG | 0.376961 | 5.3:+36742065 | None:intergenic |
| TTCGAGCTGCTTGCATTGTC+GGG | 0.378913 | 5.3:-36747036 | MS.gene58992:CDS |
| CTGTGGTTGAGTTAAATTAA+GGG | 0.383263 | 5.3:+36742235 | None:intergenic |
| ACTTACCTTCATCATGCATT+TGG | 0.389358 | 5.3:+36746740 | None:intergenic |
| GAAACTCTTCAAGTGCTTGT+TGG | 0.391247 | 5.3:+36742844 | None:intergenic |
| AAGCGCGGCTTTAGATATTT+GGG | 0.391567 | 5.3:-36746182 | MS.gene58992:intron |
| TAGAATTTCATGACGATTGT+TGG | 0.393019 | 5.3:-36747390 | MS.gene58992:CDS |
| ACCTGTTTCGGTTTCTGTCA+CGG | 0.403817 | 5.3:+36742972 | None:intergenic |
| AGTCTTTCTTCAGGCTGGGC+TGG | 0.407028 | 5.3:+36743013 | None:intergenic |
| CAAAAGGGTTATTTCTAAGC+TGG | 0.410701 | 5.3:+36742081 | None:intergenic |
| TGAGATGGAAGATAAGTTCT+TGG | 0.410851 | 5.3:-36742684 | MS.gene58992:CDS |
| CGGTCTATTGCGGGAGTTGA+AGG | 0.411071 | 5.3:-36742900 | MS.gene58992:CDS |
| AGCACCAAAGAAGGCGGATT+GGG | 0.419157 | 5.3:-36741946 | MS.gene58992:CDS |
| CAGCCTGAAGAAAGACTTCT+CGG | 0.424993 | 5.3:-36743007 | MS.gene58992:CDS |
| GATCAATCCCGGTCTATTGC+GGG | 0.428766 | 5.3:-36742909 | MS.gene58992:CDS |
| GTCCACCGTTACAGGCTGAT+TGG | 0.428806 | 5.3:+36742940 | None:intergenic |
| TTTGGATGGTTCCTCCAGCC+TGG | 0.435969 | 5.3:+36742044 | None:intergenic |
| ATCCTTCTTCATGCTTCTTG+TGG | 0.439190 | 5.3:+36741719 | None:intergenic |
| TCTCCGAGAAGTCTTTCTTC+AGG | 0.443583 | 5.3:+36743004 | None:intergenic |
| GATTGCTGATAGATTACAAC+TGG | 0.448023 | 5.3:-36747014 | MS.gene58992:CDS |
| GCGTCATCAGTCAAAGTAAA+CGG | 0.449083 | 5.3:+36742755 | None:intergenic |
| ACAGTGTTCATTTGATTCAC+CGG | 0.455116 | 5.3:+36742206 | None:intergenic |
| TATCTGTATTTGTTAATCAC+TGG | 0.455747 | 5.3:+36746263 | None:intergenic |
| GTGAACTACCTCAGCAATCA+AGG | 0.458209 | 5.3:-36742107 | MS.gene58992:CDS |
| GATAGAACTGGTGGTACAAA+AGG | 0.459044 | 5.3:-36742365 | MS.gene58992:CDS |
| CTCTCTGGTTTCTTGAGCTA+AGG | 0.464981 | 5.3:+36741887 | None:intergenic |
| CAGAAAGAGGGAGAGTCCTT+GGG | 0.465171 | 5.3:-36742602 | MS.gene58992:CDS |
| TGGTTTGATTCCTTACCTAC+TGG | 0.465305 | 5.3:-36742725 | MS.gene58992:CDS |
| ACTCAGAAAACTTCGAGAAA+AGG | 0.469910 | 5.3:-36743113 | MS.gene58992:CDS |
| ATTCGAAGTAGACAAAGATA+TGG | 0.471232 | 5.3:-36743050 | MS.gene58992:CDS |
| TTCCAGTTTCCAACAGAAAG+AGG | 0.472214 | 5.3:-36742615 | MS.gene58992:CDS |
| GATTATATGTATTTGCAAAA+GGG | 0.472544 | 5.3:+36742066 | None:intergenic |
| CTTCAACTCCCGCAATAGAC+CGG | 0.474541 | 5.3:+36742901 | None:intergenic |
| GTCAAATGTGATTGGTGCAC+TGG | 0.475539 | 5.3:-36742185 | MS.gene58992:CDS |
| AGGACTCTCCCTCTTTCTGT+TGG | 0.475944 | 5.3:+36742606 | None:intergenic |
| AGAAGTAAGAAATGATAAAG+AGG | 0.476321 | 5.3:-36747435 | None:intergenic |
| TGGTAACAGTGTTGCTTGGA+AGG | 0.476408 | 5.3:+36741775 | None:intergenic |
| GAGAAGTCTTTCTTCAGGCT+GGG | 0.477849 | 5.3:+36743009 | None:intergenic |
| CTTGTCGCCTTCTCACAAAC+AGG | 0.479922 | 5.3:+36742642 | None:intergenic |
| GGTAGTTCACCATCTCCACT+TGG | 0.480696 | 5.3:+36742120 | None:intergenic |
| CGTTACAGGCTGATTGGTAA+TGG | 0.484026 | 5.3:+36742946 | None:intergenic |
| AAAATCTTGAAACTCAAGTT+GGG | 0.487349 | 5.3:-36741836 | MS.gene58992:CDS |
| CCCGTGACAGAAACCGAAAC+AGG | 0.488363 | 5.3:-36742973 | MS.gene58992:CDS |
| TCCACTTGGGTTGCATCCAT+GGG | 0.488532 | 5.3:+36742134 | None:intergenic |
| TTGTTTCTTTCCGGATTGCT+CGG | 0.489330 | 5.3:+36743137 | None:intergenic |
| CAGTGTTCATTTGATTCACC+GGG | 0.493068 | 5.3:+36742207 | None:intergenic |
| GACAAATTTGAGATCAATCC+CGG | 0.493175 | 5.3:-36742920 | MS.gene58992:CDS |
| ATCAAACCAAGCACCAAAGA+AGG | 0.505026 | 5.3:-36741955 | MS.gene58992:CDS |
| TCTTACTTGTCATCATAAGC+TGG | 0.505298 | 5.3:+36747361 | None:intergenic |
| CCTTAATTTAACTCAACCAC+AGG | 0.505924 | 5.3:-36742234 | MS.gene58992:CDS |
| AAAGAGGTATTGTGCAGATA+AGG | 0.507731 | 5.3:-36747419 | MS.gene58992:CDS |
| ACCTACATGCATGCCGGTAC+CGG | 0.508560 | 5.3:+36738661 | None:intergenic |
| AAAGACTTCTCGGAGACTAT+GGG | 0.510166 | 5.3:-36742997 | MS.gene58992:CDS |
| TTTGCAAATACATATAATCC+AGG | 0.512943 | 5.3:-36742062 | MS.gene58992:CDS |
| AACTCAACCACAGGTTGCCC+CGG | 0.514789 | 5.3:-36742225 | MS.gene58992:CDS |
| AAGCACCAAAGAAGGCGGAT+TGG | 0.515452 | 5.3:-36741947 | MS.gene58992:CDS |
| TGTTTCCAAAATGGAGGAGA+AGG | 0.517813 | 5.3:-36746835 | MS.gene58992:CDS |
| GTTCTGTAATGGTCTACGTC+TGG | 0.518475 | 5.3:-36742501 | MS.gene58992:CDS |
| CGCTGAAGTGACAAAGAGAA+TGG | 0.518635 | 5.3:-36742261 | MS.gene58992:CDS |
| CTACAGACCTGTTTGTGAGA+AGG | 0.518812 | 5.3:-36742649 | MS.gene58992:CDS |
| TGTTATGCTACCAGTAGGTA+AGG | 0.521275 | 5.3:+36742715 | None:intergenic |
| GAGAGGCTCAAAAGAATACA+AGG | 0.522658 | 5.3:-36741869 | MS.gene58992:CDS |
| AACGACTTTGATTATTTGAG+AGG | 0.530796 | 5.3:+36742424 | None:intergenic |
| TGTTGCACTCAATGAACAAA+TGG | 0.532164 | 5.3:-36742396 | MS.gene58992:CDS |
| CAAATACATATAATCCAGGC+TGG | 0.533170 | 5.3:-36742058 | MS.gene58992:CDS |
| AGATCAATCCCGGTCTATTG+CGG | 0.533742 | 5.3:-36742910 | MS.gene58992:CDS |
| TGAACACTGTCAAATGTGAT+TGG | 0.534099 | 5.3:-36742193 | MS.gene58992:CDS |
| CATAACAACTTGGAATGAGA+TGG | 0.537048 | 5.3:-36742699 | MS.gene58992:CDS |
| TTCAACTCCCGCAATAGACC+GGG | 0.543701 | 5.3:+36742902 | None:intergenic |
| GGAACCATCCAAATTTCTCA+TGG | 0.547525 | 5.3:-36742034 | MS.gene58992:CDS |
| GGAGTTAGCAATTGAAGCAA+TGG | 0.548664 | 5.3:-36741925 | MS.gene58992:CDS |
| TCCAGTTTCCAACAGAAAGA+GGG | 0.551110 | 5.3:-36742614 | MS.gene58992:CDS |
| CATTCTCTTTGTCACTTCAG+CGG | 0.552645 | 5.3:+36742262 | None:intergenic |
| GTAGTATCAAAGTTGTGCTC+GGG | 0.553090 | 5.3:+36742539 | None:intergenic |
| GGCACTCTGAAGAAGCCAAA+CGG | 0.554129 | 5.3:-36742790 | MS.gene58992:CDS |
| ATGGAGTTGTATGATAGAAC+TGG | 0.556296 | 5.3:-36742377 | MS.gene58992:CDS |
| CTACTGGTAGCATAACAACT+TGG | 0.556576 | 5.3:-36742709 | MS.gene58992:CDS |
| AGTAGTATCAAAGTTGTGCT+CGG | 0.558642 | 5.3:+36742538 | None:intergenic |
| AATGCTCAAGCCATACTCAC+TGG | 0.558976 | 5.3:-36742308 | MS.gene58992:CDS |
| CACAATGCATAGTGAAATGA+GGG | 0.561790 | 5.3:+36742162 | None:intergenic |
| TACCACAAGAAGCATGAAGA+AGG | 0.562572 | 5.3:-36741721 | MS.gene58992:CDS |
| TTACATTGTTTCCAAAATGG+AGG | 0.563021 | 5.3:-36746841 | MS.gene58992:CDS |
| TCACAATGCATAGTGAAATG+AGG | 0.563155 | 5.3:+36742161 | None:intergenic |
| TACCAATCAGCCTGTAACGG+TGG | 0.563890 | 5.3:-36742942 | MS.gene58992:CDS |
| TCATCTCAAGCTAAACATGA+TGG | 0.566884 | 5.3:-36741687 | MS.gene58992:CDS |
| GGTAACAGTGTTGCTTGGAA+GGG | 0.567488 | 5.3:+36741776 | None:intergenic |
| GTAGTTCACCATCTCCACTT+GGG | 0.568409 | 5.3:+36742121 | None:intergenic |
| GGAGATCGACACGGACGAAG+AGG | 0.570846 | 5.3:-36743074 | MS.gene58992:CDS |
| GCTGGTTCCCTTGATTGCTG+AGG | 0.571210 | 5.3:+36742099 | None:intergenic |
| TTGAGCTAAGGAATTCATGT+TGG | 0.573044 | 5.3:+36741899 | None:intergenic |
| GAATTTCATGACGATTGTTG+GGG | 0.575754 | 5.3:-36747388 | MS.gene58992:CDS |
| AATGGAGGAGAAGGAAGTCA+TGG | 0.577176 | 5.3:-36746826 | MS.gene58992:CDS |
| TGATTCACCGGGGCAACCTG+TGG | 0.579485 | 5.3:+36742218 | None:intergenic |
| CGAAGTAGACAAAGATATGG+AGG | 0.579520 | 5.3:-36743047 | MS.gene58992:CDS |
| AAAGGAAGTGGCTAATACAG+TGG | 0.585375 | 5.3:-36743095 | MS.gene58992:CDS |
| GCAACACTGTTACCAATCCA+AGG | 0.587211 | 5.3:-36741767 | MS.gene58992:CDS |
| ATGACGATAGGATCCGGTAC+CGG | 0.587329 | 5.3:-36738674 | MS.gene58992:intron |
| GGATGCAACCCAAGTGGAGA+TGG | 0.587388 | 5.3:-36742129 | MS.gene58992:CDS |
| CAAGTTGTTATGCTACCAGT+AGG | 0.589629 | 5.3:+36742710 | None:intergenic |
| CTTCTCACAAACAGGTCTGT+AGG | 0.594525 | 5.3:+36742650 | None:intergenic |
| GACTTTGATTATTTGAGAGG+CGG | 0.597181 | 5.3:+36742427 | None:intergenic |
| TCCTGAACTAATTGAAGTAG+AGG | 0.599307 | 5.3:-36741652 | MS.gene58992:CDS |
| TTCTCAAAATCAACAACAAG+GGG | 0.601453 | 5.3:-36741994 | MS.gene58992:CDS |
| TATGCATTGTGATGTGCCCA+TGG | 0.601584 | 5.3:-36742150 | MS.gene58992:CDS |
| GGATTGGTAACAGTGTTGCT+TGG | 0.601955 | 5.3:+36741771 | None:intergenic |
| GGATCATGAAAATGTGAACA+TGG | 0.602463 | 5.3:-36741745 | MS.gene58992:CDS |
| CAGATGCAGATGTTCTGTAA+TGG | 0.603270 | 5.3:-36742512 | MS.gene58992:CDS |
| TGTGAGACAGCAAAAGTGCA+AGG | 0.608591 | 5.3:-36742812 | MS.gene58992:CDS |
| TCCTAGACCTACATGCATGC+CGG | 0.611121 | 5.3:+36738655 | None:intergenic |
| AAAACTTCGAGAAAAGGAAG+TGG | 0.613725 | 5.3:-36743107 | MS.gene58992:CDS |
| TTCAGCTAAAACAAGTTCTG+TGG | 0.614788 | 5.3:+36746791 | None:intergenic |
| CATTACCAATCAGCCTGTAA+CGG | 0.616778 | 5.3:-36742945 | MS.gene58992:CDS |
| ATGCAGAGTTCAGTGCATAG+TGG | 0.617607 | 5.3:-36746769 | MS.gene58992:CDS |
| AGCAAGGACTTATTAAAGCG+CGG | 0.619308 | 5.3:-36746197 | MS.gene58992:CDS |
| CAATGCCAAATGCATGATGA+AGG | 0.621689 | 5.3:-36746745 | MS.gene58992:intron |
| GGTTCTCAAAATCAACAACA+AGG | 0.625189 | 5.3:-36741996 | MS.gene58992:CDS |
| AAAAGCAGATGCCATAAGCA+AGG | 0.629423 | 5.3:-36746213 | MS.gene58992:CDS |
| GTTCTCAAAATCAACAACAA+GGG | 0.635425 | 5.3:-36741995 | MS.gene58992:CDS |
| TCCGGTACCGGCATGCATGT+AGG | 0.635500 | 5.3:-36738662 | None:intergenic |
| TCTACTTCAATTAGTTCAGG+AGG | 0.636941 | 5.3:+36741654 | None:intergenic |
| CAACTCACTCAAAGAGCTCG+AGG | 0.642763 | 5.3:-36741801 | MS.gene58992:CDS |
| GTGAGACAGCAAAAGTGCAA+GGG | 0.643388 | 5.3:-36742811 | MS.gene58992:CDS |
| AGAACTGGTGGTACAAAAGG+AGG | 0.645538 | 5.3:-36742362 | MS.gene58992:CDS |
| GTTCTTGATACAGCTTCTGG+TGG | 0.647696 | 5.3:-36742467 | MS.gene58992:CDS |
| TGAACTACCTCAGCAATCAA+GGG | 0.652240 | 5.3:-36742106 | MS.gene58992:CDS |
| TGACTGATGACGCTTATGAG+TGG | 0.656088 | 5.3:-36742745 | MS.gene58992:CDS |
| AAACCAAGCACCAAAGAAGG+CGG | 0.660498 | 5.3:-36741952 | MS.gene58992:CDS |
| GAAGTAGACAAAGATATGGA+GGG | 0.665041 | 5.3:-36743046 | MS.gene58992:CDS |
| CAACACTGTTACCAATCCAA+GGG | 0.666106 | 5.3:-36741766 | MS.gene58992:CDS |
| TCTCAAGCTAAACATGATGG+AGG | 0.669717 | 5.3:-36741684 | MS.gene58992:CDS |
| AAGACTTCTCGGAGACTATG+GGG | 0.675370 | 5.3:-36742996 | MS.gene58992:CDS |
| ATACATATAATCCAGGCTGG+AGG | 0.691165 | 5.3:-36742055 | MS.gene58992:CDS |
| GCCCATGGATGCAACCCAAG+TGG | 0.693090 | 5.3:-36742135 | MS.gene58992:CDS |
| AGAGGCTCAAAAGAATACAA+GGG | 0.713874 | 5.3:-36741868 | MS.gene58992:CDS |
| GAGTTGTATGATAGAACTGG+TGG | 0.731579 | 5.3:-36742374 | MS.gene58992:CDS |
| CTTAGCTCAAGAAACCAGAG+AGG | 0.758641 | 5.3:-36741886 | MS.gene58992:CDS |
| AGTGTTCATTTGATTCACCG+GGG | 0.764189 | 5.3:+36742208 | None:intergenic |
| TAATACAGTGGAGATCGACA+CGG | 0.764614 | 5.3:-36743083 | MS.gene58992:CDS |
| TCTCAAAATCAACAACAAGG+GGG | 0.774993 | 5.3:-36741993 | MS.gene58992:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 36738663 | 36747446 | 36738663 | ID=MS.gene58992 |
| chr5.3 | mRNA | 36738663 | 36747446 | 36738663 | ID=MS.gene58992.t1;Parent=MS.gene58992 |
| chr5.3 | exon | 36747367 | 36747446 | 36747367 | ID=MS.gene58992.t1.exon1;Parent=MS.gene58992.t1 |
| chr5.3 | CDS | 36747367 | 36747446 | 36747367 | ID=cds.MS.gene58992.t1;Parent=MS.gene58992.t1 |
| chr5.3 | exon | 36746982 | 36747065 | 36746982 | ID=MS.gene58992.t1.exon2;Parent=MS.gene58992.t1 |
| chr5.3 | CDS | 36746982 | 36747065 | 36746982 | ID=cds.MS.gene58992.t1;Parent=MS.gene58992.t1 |
| chr5.3 | exon | 36746746 | 36746887 | 36746746 | ID=MS.gene58992.t1.exon3;Parent=MS.gene58992.t1 |
| chr5.3 | CDS | 36746746 | 36746887 | 36746746 | ID=cds.MS.gene58992.t1;Parent=MS.gene58992.t1 |
| chr5.3 | exon | 36746183 | 36746342 | 36746183 | ID=MS.gene58992.t1.exon4;Parent=MS.gene58992.t1 |
| chr5.3 | CDS | 36746183 | 36746342 | 36746183 | ID=cds.MS.gene58992.t1;Parent=MS.gene58992.t1 |
| chr5.3 | exon | 36741647 | 36743175 | 36741647 | ID=MS.gene58992.t1.exon5;Parent=MS.gene58992.t1 |
| chr5.3 | CDS | 36741647 | 36743175 | 36741647 | ID=cds.MS.gene58992.t1;Parent=MS.gene58992.t1 |
| chr5.3 | exon | 36738663 | 36738686 | 36738663 | ID=MS.gene58992.t1.exon6;Parent=MS.gene58992.t1 |
| chr5.3 | CDS | 36738663 | 36738686 | 36738663 | ID=cds.MS.gene58992.t1;Parent=MS.gene58992.t1 |
| Gene Sequence |
| Protein sequence |
