Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06165.t1 | XP_003630667.2 | 99.5 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 2.40E-107 | 398.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06165.t1 | O82197 | 77.2 | 219 | 38 | 6 | 7 | 222 | 4 | 213 | 1.5e-73 | 277.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06165.t1 | G7LJN0 | 99.5 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 1.7e-107 | 398.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049419 | MS.gene06165 | -0.831143 | 1.97E-55 | -1.69E-46 |
| MS.gene051122 | MS.gene06165 | 0.81104 | 8.54E-51 | -1.69E-46 |
| MS.gene051184 | MS.gene06165 | 0.828477 | 8.80E-55 | -1.69E-46 |
| MS.gene051541 | MS.gene06165 | 0.846075 | 2.73E-59 | -1.69E-46 |
| MS.gene051655 | MS.gene06165 | 0.811932 | 5.47E-51 | -1.69E-46 |
| MS.gene052493 | MS.gene06165 | 0.825415 | 4.75E-54 | -1.69E-46 |
| MS.gene053298 | MS.gene06165 | 0.835932 | 1.26E-56 | -1.69E-46 |
| MS.gene053726 | MS.gene06165 | 0.807806 | 4.22E-50 | -1.69E-46 |
| MS.gene053879 | MS.gene06165 | 0.841824 | 3.76E-58 | -1.69E-46 |
| MS.gene054479 | MS.gene06165 | 0.805614 | 1.23E-49 | -1.69E-46 |
| MS.gene054892 | MS.gene06165 | 0.842684 | 2.23E-58 | -1.69E-46 |
| MS.gene054893 | MS.gene06165 | 0.84902 | 4.23E-60 | -1.69E-46 |
| MS.gene055864 | MS.gene06165 | 0.826453 | 2.69E-54 | -1.69E-46 |
| MS.gene058159 | MS.gene06165 | 0.807411 | 5.12E-50 | -1.69E-46 |
| MS.gene058429 | MS.gene06165 | 0.852071 | 5.87E-61 | -1.69E-46 |
| MS.gene05952 | MS.gene06165 | 0.805825 | 1.11E-49 | -1.69E-46 |
| MS.gene060259 | MS.gene06165 | 0.835521 | 1.60E-56 | -1.69E-46 |
| MS.gene060412 | MS.gene06165 | 0.803825 | 2.90E-49 | -1.69E-46 |
| MS.gene060850 | MS.gene06165 | 0.817704 | 2.87E-52 | -1.69E-46 |
| MS.gene060851 | MS.gene06165 | 0.829104 | 6.20E-55 | -1.69E-46 |
| MS.gene060852 | MS.gene06165 | 0.826896 | 2.11E-54 | -1.69E-46 |
| MS.gene060932 | MS.gene06165 | 0.824785 | 6.69E-54 | -1.69E-46 |
| MS.gene06123 | MS.gene06165 | 0.833551 | 5.00E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06165.t1 | MTR_8g102030 | 99.550 | 222 | 1 | 0 | 1 | 222 | 1 | 222 | 2.31e-160 | 442 |
| MS.gene06165.t1 | MTR_6g090515 | 81.364 | 220 | 39 | 2 | 5 | 222 | 1 | 220 | 1.07e-105 | 304 |
| MS.gene06165.t1 | MTR_8g102020 | 67.411 | 224 | 52 | 5 | 1 | 222 | 1 | 205 | 1.91e-72 | 219 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06165.t1 | AT2G19830 | 77.027 | 222 | 38 | 7 | 5 | 222 | 1 | 213 | 6.22e-98 | 284 |
| MS.gene06165.t1 | AT4G29160 | 77.828 | 221 | 44 | 4 | 5 | 222 | 1 | 219 | 7.69e-93 | 271 |
| MS.gene06165.t1 | AT4G29160 | 77.828 | 221 | 44 | 4 | 5 | 222 | 1 | 219 | 7.69e-93 | 271 |
| MS.gene06165.t1 | AT2G19830 | 79.293 | 198 | 31 | 5 | 28 | 222 | 4 | 194 | 6.48e-90 | 263 |
| MS.gene06165.t1 | AT4G29160 | 80.000 | 180 | 33 | 3 | 46 | 222 | 13 | 192 | 9.44e-83 | 244 |
Find 47 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAAGAGCCAAGAATAAA+AGG | 0.227877 | 4.2:+3232655 | MS.gene06165:CDS |
| ACTTGGAATGCTAGAGAAAA+AGG | 0.296376 | 4.2:+3232581 | MS.gene06165:CDS |
| GGAGAGCGTGCTTCTTAAAA+AGG | 0.301195 | 4.2:+3232602 | MS.gene06165:CDS |
| GGGACATGCACAGAGGCTTC+TGG | 0.308869 | 4.2:-3235408 | None:intergenic |
| TGAGAACATGAAACAGATTC+AGG | 0.382236 | 4.2:+3235130 | MS.gene06165:CDS |
| GCCCACTCCTGAGGAAGAAT+TGG | 0.390463 | 4.2:+3235464 | MS.gene06165:CDS |
| GCTTCTGGAGTTGTAATTGC+AGG | 0.391518 | 4.2:-3235393 | None:intergenic |
| GGACGAGTAGGCCGCCTAGC+TGG | 0.394730 | 4.2:-3235429 | None:intergenic |
| TACTGTTTCTGTGGTTGCCT+TGG | 0.415099 | 4.2:-3234712 | None:intergenic |
| CCAGTTGCGTATTCATGATC+AGG | 0.417336 | 4.2:+3233477 | MS.gene06165:CDS |
| AGCTAGGCGGCCTACTCGTC+CGG | 0.432309 | 4.2:+3235431 | MS.gene06165:CDS |
| GAATTATTGTCCGCTCCAAT+TGG | 0.445452 | 4.2:+3235152 | MS.gene06165:CDS |
| TTCTAAAGTTGATAGAGTAT+TGG | 0.445759 | 4.2:-3232221 | None:intergenic |
| CACAAGAGCCAAGAATAAAA+GGG | 0.447210 | 4.2:+3232656 | MS.gene06165:CDS |
| AAATCAGCAGCTGCACCAAT+TGG | 0.448641 | 4.2:-3235167 | None:intergenic |
| GGCAGCTTTGCAAGCTGAGA+TGG | 0.454546 | 4.2:+3235485 | MS.gene06165:CDS |
| ACAGTAGCCGCATTGAGAAC+TGG | 0.461367 | 4.2:+3234729 | MS.gene06165:CDS |
| AGAGCTAGAGGGTGCTGAGT+TGG | 0.470621 | 4.2:+3235353 | MS.gene06165:CDS |
| GCCAATTCTTCCTCAGGAGT+GGG | 0.471301 | 4.2:-3235465 | None:intergenic |
| AAAGCTGCCAATTCTTCCTC+AGG | 0.474769 | 4.2:-3235471 | None:intergenic |
| GGCTGCAGCTGAAGTTGAAA+GGG | 0.480403 | 4.2:+3232623 | MS.gene06165:CDS |
| CGGCGATACAATGTTTGAAA+AGG | 0.488220 | 4.2:+3233413 | MS.gene06165:CDS |
| CCTGATCATGAATACGCAAC+TGG | 0.506321 | 4.2:-3233477 | None:intergenic |
| AGGCTGCAGCTGAAGTTGAA+AGG | 0.506350 | 4.2:+3232622 | MS.gene06165:CDS |
| GACGAGTAGGCCGCCTAGCT+GGG | 0.521270 | 4.2:-3235428 | None:intergenic |
| TACAATGTTTGAAAAGGAAG+AGG | 0.525703 | 4.2:+3233419 | MS.gene06165:CDS |
| CCTCTGTGCATGTCCCAGCT+AGG | 0.540963 | 4.2:+3235415 | MS.gene06165:CDS |
| CTGTTCGTTAATCTCATCCA+TGG | 0.550173 | 4.2:-3235105 | None:intergenic |
| TGCCAATTCTTCCTCAGGAG+TGG | 0.551831 | 4.2:-3235466 | None:intergenic |
| TTTGTATGCACCGGACGAGT+AGG | 0.560328 | 4.2:-3235441 | None:intergenic |
| GCTTGAATTATGTAGACACT+TGG | 0.569639 | 4.2:+3232564 | MS.gene06165:intron |
| TGTGTTACAGATGATAATGC+TGG | 0.571958 | 4.2:+3234683 | MS.gene06165:intron |
| CAATGCGGCTACTGTTTCTG+TGG | 0.580774 | 4.2:-3234721 | None:intergenic |
| AGCAGAACTTGAAGAGCTAG+AGG | 0.585998 | 4.2:+3235341 | MS.gene06165:CDS |
| GATAATGCTGGAAGGTGCCA+AGG | 0.586807 | 4.2:+3234695 | MS.gene06165:CDS |
| GAACAGCAAGTAGAGCAGCT+TGG | 0.594879 | 4.2:+3233448 | MS.gene06165:CDS |
| GGAGTGGGCTTTGTATGCAC+CGG | 0.596065 | 4.2:-3235450 | None:intergenic |
| TAATGATGTTGATGCGACCA+TGG | 0.625933 | 4.2:+3235088 | MS.gene06165:CDS |
| ACAAGAGCCAAGAATAAAAG+GGG | 0.640430 | 4.2:+3232657 | MS.gene06165:CDS |
| AGCAGCTGCACCAATTGGAG+CGG | 0.641867 | 4.2:-3235162 | None:intergenic |
| GCAGAACTTGAAGAGCTAGA+GGG | 0.644080 | 4.2:+3235342 | MS.gene06165:CDS |
| GCATACAAAGCCCACTCCTG+AGG | 0.653225 | 4.2:+3235455 | MS.gene06165:CDS |
| AGCCGCATTGAGAACTGGAG+CGG | 0.658271 | 4.2:+3234734 | MS.gene06165:CDS |
| CTGTGCATGTCCCAGCTAGG+CGG | 0.671027 | 4.2:+3235418 | MS.gene06165:CDS |
| CCTAGCTGGGACATGCACAG+AGG | 0.679296 | 4.2:-3235415 | None:intergenic |
| TTACAGATGATAATGCTGGA+AGG | 0.735879 | 4.2:+3234687 | MS.gene06165:intron |
| AGCCGCTCCAGTTCTCAATG+CGG | 0.737111 | 4.2:-3234736 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATTATTATATTATTTAA+AGG | + | chr4.2:3234437-3234456 | MS.gene06165:intron | 0.0% |
| !! | AAACATGTATAAATAAATAA+AGG | + | chr4.2:3234199-3234218 | MS.gene06165:intron | 10.0% |
| !! | GTAAACAAATATTATATTTA+TGG | + | chr4.2:3234165-3234184 | MS.gene06165:intron | 10.0% |
| !! | TATAATTATATATCATTACT+AGG | - | chr4.2:3234140-3234159 | None:intergenic | 10.0% |
| !!! | TATTATTTATAAGTTTGTTA+AGG | - | chr4.2:3233819-3233838 | None:intergenic | 10.0% |
| !! | AAAACTTATCTATAGAAATT+TGG | - | chr4.2:3233251-3233270 | None:intergenic | 15.0% |
| !! | GTAATAAATCAATTGAATTA+TGG | - | chr4.2:3234244-3234263 | None:intergenic | 15.0% |
| !! | TACTTATTATGTGAAATATT+CGG | + | chr4.2:3235278-3235297 | MS.gene06165:intron | 15.0% |
| !!! | ACTTTTTTAAAGAATATAAG+TGG | + | chr4.2:3232701-3232720 | MS.gene06165:intron | 15.0% |
| !!! | CATATTGATTCTAAATAAAT+TGG | + | chr4.2:3234400-3234419 | MS.gene06165:intron | 15.0% |
| !!! | CTTTTTTAAAGAATATAAGT+GGG | + | chr4.2:3232702-3232721 | MS.gene06165:intron | 15.0% |
| !!! | GTTTATATTATATTGCTATT+CGG | + | chr4.2:3232351-3232370 | MS.gene06165:intron | 15.0% |
| !!! | TTGCAATATTATATTTTTTC+AGG | + | chr4.2:3235060-3235079 | MS.gene06165:intron | 15.0% |
| !!! | TTTGTTTCCATATATTATTT+TGG | + | chr4.2:3232744-3232763 | MS.gene06165:intron | 15.0% |
| !! | AAAACTATAAAAATGCCTTT+GGG | - | chr4.2:3233989-3234008 | None:intergenic | 20.0% |
| !! | AAGTTCTCCAAAATAATATA+TGG | - | chr4.2:3232754-3232773 | None:intergenic | 20.0% |
| !! | AATAATATATGGAAACAAAC+AGG | - | chr4.2:3232743-3232762 | None:intergenic | 20.0% |
| !! | AGTAGTATCTTTATAACTAT+AGG | - | chr4.2:3232456-3232475 | None:intergenic | 20.0% |
| !! | ATAATATATGGAAACAAACA+GGG | - | chr4.2:3232742-3232761 | None:intergenic | 20.0% |
| !! | ATCTACGTTAATATACAAAA+TGG | - | chr4.2:3233663-3233682 | None:intergenic | 20.0% |
| !! | TAAAAAAACAGTGCAAAAAA+TGG | - | chr4.2:3234533-3234552 | None:intergenic | 20.0% |
| !! | TTGTATATTAACGTAGATAT+AGG | + | chr4.2:3233665-3233684 | MS.gene06165:intron | 20.0% |
| !! | TTTATAATATTCTTCTGATG+TGG | + | chr4.2:3234958-3234977 | MS.gene06165:intron | 20.0% |
| !!! | AACTTTAGAAAAATTAAGTG+AGG | + | chr4.2:3232234-3232253 | MS.gene06165:CDS | 20.0% |
| !!! | ACATTCATTATTTTCAAAAG+TGG | + | chr4.2:3233549-3233568 | MS.gene06165:intron | 20.0% |
| !!! | ATATTATATACTTGGTGTTA+AGG | + | chr4.2:3234888-3234907 | MS.gene06165:intron | 20.0% |
| !!! | ATTCTTTAAAAAAGTATCCA+TGG | - | chr4.2:3232696-3232715 | None:intergenic | 20.0% |
| !!! | ATTTTTTGCACTGTTTTTTT+AGG | + | chr4.2:3234532-3234551 | MS.gene06165:intron | 20.0% |
| !!! | CAATTGATTTATTACATTAC+TGG | + | chr4.2:3234249-3234268 | MS.gene06165:intron | 20.0% |
| !!! | TAATAATGGATTTCTAAAGA+GGG | - | chr4.2:3233320-3233339 | None:intergenic | 20.0% |
| !!! | TTCTTTAAAAAAGTATCCAT+GGG | - | chr4.2:3232695-3232714 | None:intergenic | 20.0% |
| !!! | TTTTTTGCACTGTTTTTTTA+GGG | + | chr4.2:3234533-3234552 | MS.gene06165:intron | 20.0% |
| !!! | TTTTTTTGTAGAAAATTGAC+AGG | - | chr4.2:3233961-3233980 | None:intergenic | 20.0% |
| ! | AAAATAATGAATGTAACTGC+TGG | - | chr4.2:3233543-3233562 | None:intergenic | 25.0% |
| ! | AAAATGTGAACTGATAGAAA+AGG | + | chr4.2:3233142-3233161 | MS.gene06165:intron | 25.0% |
| ! | AAAGTTTCTTCATAGTTGAT+TGG | + | chr4.2:3233024-3233043 | MS.gene06165:intron | 25.0% |
| ! | AAGGGAAAAATATCCATTTA+AGG | - | chr4.2:3234095-3234114 | None:intergenic | 25.0% |
| ! | AGGGAAAAATATCCATTTAA+GGG | - | chr4.2:3234094-3234113 | None:intergenic | 25.0% |
| ! | CATTAAATCGCTAAAAAGAA+AGG | + | chr4.2:3233614-3233633 | MS.gene06165:intron | 25.0% |
| ! | CTAAAATAAGCTAATCCAAA+CGG | + | chr4.2:3233881-3233900 | MS.gene06165:intron | 25.0% |
| ! | GAAAACTATAAAAATGCCTT+TGG | - | chr4.2:3233990-3234009 | None:intergenic | 25.0% |
| ! | TACGTTAATATACAAAATGG+TGG | - | chr4.2:3233660-3233679 | None:intergenic | 25.0% |
| ! | TAGATTACTAGAATGAAAGT+GGG | + | chr4.2:3233171-3233190 | MS.gene06165:intron | 25.0% |
| ! | TTTAAAGAATATAAGTGGGA+CGG | + | chr4.2:3232706-3232725 | MS.gene06165:intron | 25.0% |
| !! | CTTTAGAAATCCATTATTAG+TGG | + | chr4.2:3233321-3233340 | MS.gene06165:intron | 25.0% |
| !! | TCAGTTCACATTTTATAAAG+TGG | - | chr4.2:3233136-3233155 | None:intergenic | 25.0% |
| !! | TCTTTCTTATCTTTAGGTTA+CGG | + | chr4.2:3235019-3235038 | MS.gene06165:intron | 25.0% |
| !! | TTCTATAGATAAGTTTTACC+TGG | + | chr4.2:3233254-3233273 | MS.gene06165:intron | 25.0% |
| !! | TTGTATTTAGTTTCTACCAA+TGG | + | chr4.2:3232496-3232515 | MS.gene06165:intron | 25.0% |
| !! | TTGTCTTTTATATCTTATGC+TGG | + | chr4.2:3234655-3234674 | MS.gene06165:intron | 25.0% |
| !!! | AATAATGGATTTCTAAAGAG+GGG | - | chr4.2:3233319-3233338 | None:intergenic | 25.0% |
| !!! | ATTTTTAGCATAAAATGTCC+AGG | - | chr4.2:3233275-3233294 | None:intergenic | 25.0% |
| !!! | CTAATAATGGATTTCTAAAG+AGG | - | chr4.2:3233321-3233340 | None:intergenic | 25.0% |
| !!! | CTTTCTTTTTAGCGATTTAA+TGG | - | chr4.2:3233616-3233635 | None:intergenic | 25.0% |
| !!! | GAATCTTTTTAGCGATTTAA+TGG | - | chr4.2:3233580-3233599 | None:intergenic | 25.0% |
| !!! | TTCTAAAGTTGATAGAGTAT+TGG | - | chr4.2:3232224-3232243 | None:intergenic | 25.0% |
| !!! | TTTTTATTTTCACTCTGCTA+TGG | + | chr4.2:3235214-3235233 | MS.gene06165:intron | 25.0% |
| AAGTGTAGAATAGAATGATC+AGG | - | chr4.2:3233226-3233245 | None:intergenic | 30.0% | |
| ACTTATTTGAGTCTATCTAC+TGG | - | chr4.2:3232860-3232879 | None:intergenic | 30.0% | |
| ATTGATAAGCAACGTTATTG+TGG | + | chr4.2:3232395-3232414 | MS.gene06165:intron | 30.0% | |
| CTAGATTACTAGAATGAAAG+TGG | + | chr4.2:3233170-3233189 | MS.gene06165:intron | 30.0% | |
| CTATAGGCTTAATTGAGATA+TGG | - | chr4.2:3232440-3232459 | None:intergenic | 30.0% | |
| TAACGCTCTTTCTTATCTTT+AGG | + | chr4.2:3235013-3235032 | MS.gene06165:intron | 30.0% | |
| TACAAAAAAAATCTGCCCAA+AGG | + | chr4.2:3233971-3233990 | MS.gene06165:intron | 30.0% | |
| TACAATGTTTGAAAAGGAAG+AGG | + | chr4.2:3233419-3233438 | MS.gene06165:CDS | 30.0% | |
| TCGCTAAAAAGATTCAAAAC+TGG | + | chr4.2:3233585-3233604 | MS.gene06165:intron | 30.0% | |
| TGAATTTCTATCTATTGCAG+CGG | + | chr4.2:3233393-3233412 | MS.gene06165:intron | 30.0% | |
| TTAAAGAATATAAGTGGGAC+GGG | + | chr4.2:3232707-3232726 | MS.gene06165:intron | 30.0% | |
| ! | ATTTGACAATTTTCTCCTGA+TGG | + | chr4.2:3234033-3234052 | MS.gene06165:intron | 30.0% |
| ! | TCCATGTTTTCAAAGCTTTT+TGG | + | chr4.2:3232175-3232194 | MS.gene06165:CDS | 30.0% |
| ! | TTCTTCATAGTTGATTGGTT+TGG | + | chr4.2:3233029-3233048 | MS.gene06165:intron | 30.0% |
| ! | TTTTGTAGAAAATTGACAGG+TGG | - | chr4.2:3233958-3233977 | None:intergenic | 30.0% |
| !! | AAGATTTTTGTGGTAGTGTT+TGG | - | chr4.2:3232836-3232855 | None:intergenic | 30.0% |
| !! | ACCAAAAAGCTTTGAAAACA+TGG | - | chr4.2:3232179-3232198 | None:intergenic | 30.0% |
| !! | AGATTTTTGTGGTAGTGTTT+GGG | - | chr4.2:3232835-3232854 | None:intergenic | 30.0% |
| !! | CTACTTTTCTTGCAAAACTT+AGG | + | chr4.2:3234009-3234028 | MS.gene06165:intron | 30.0% |
| !! | CTTTTTAGCGATTTAATGGT+TGG | - | chr4.2:3233576-3233595 | None:intergenic | 30.0% |
| !! | GAAAGAGCGTTAAACAAAAA+AGG | - | chr4.2:3235005-3235024 | None:intergenic | 30.0% |
| !! | GCTTTTTGGTAAAACTAAAC+AGG | + | chr4.2:3232189-3232208 | MS.gene06165:CDS | 30.0% |
| !!! | AAAAAAGTATCCATGGGTTT+TGG | - | chr4.2:3232689-3232708 | None:intergenic | 30.0% |
| AAATCCATTATTAGTGGAGC+AGG | + | chr4.2:3233327-3233346 | MS.gene06165:intron | 35.0% | |
| ACAAGAGCCAAGAATAAAAG+GGG | + | chr4.2:3232657-3232676 | MS.gene06165:CDS | 35.0% | |
| ACATGGACATTTCCCTTAAA+TGG | + | chr4.2:3234079-3234098 | MS.gene06165:intron | 35.0% | |
| ACCAATGGTTTACAGTTTGA+GGG | + | chr4.2:3232511-3232530 | MS.gene06165:intron | 35.0% | |
| ACTTGGAATGCTAGAGAAAA+AGG | + | chr4.2:3232581-3232600 | MS.gene06165:CDS | 35.0% | |
| ATATAGAATGAGAGCAGAAG+GGG | + | chr4.2:3234324-3234343 | MS.gene06165:intron | 35.0% | |
| ATGACCTATAGAAGCAGTTA+AGG | + | chr4.2:3233064-3233083 | MS.gene06165:intron | 35.0% | |
| CAAAATAAGCTCCATCCAAA+CGG | - | chr4.2:3233693-3233712 | None:intergenic | 35.0% | |
| CACAAGAGCCAAGAATAAAA+GGG | + | chr4.2:3232656-3232675 | MS.gene06165:CDS | 35.0% | |
| CATATAGAATGAGAGCAGAA+GGG | + | chr4.2:3234323-3234342 | MS.gene06165:intron | 35.0% | |
| CATTGCTCAAATGATTGAAC+TGG | - | chr4.2:3234464-3234483 | None:intergenic | 35.0% | |
| CCTTCATTGAAGAGAAACTT+GGG | + | chr4.2:3232976-3232995 | MS.gene06165:intron | 35.0% | |
| GACTTGCACTTGTGTTAATT+TGG | + | chr4.2:3232916-3232935 | MS.gene06165:intron | 35.0% | |
| GCTTGAATTATGTAGACACT+TGG | + | chr4.2:3232564-3232583 | MS.gene06165:intron | 35.0% | |
| TAACACAAGTGCAAGTCATA+AGG | - | chr4.2:3232913-3232932 | None:intergenic | 35.0% | |
| TACCAATGGTTTACAGTTTG+AGG | + | chr4.2:3232510-3232529 | MS.gene06165:intron | 35.0% | |
| TAGAAAATTGACAGGTGGTT+GGG | - | chr4.2:3233953-3233972 | None:intergenic | 35.0% | |
| TCACAAGAGCCAAGAATAAA+AGG | + | chr4.2:3232655-3232674 | MS.gene06165:CDS | 35.0% | |
| TCATATAGAATGAGAGCAGA+AGG | + | chr4.2:3234322-3234341 | MS.gene06165:intron | 35.0% | |
| TGAGAACATGAAACAGATTC+AGG | + | chr4.2:3235130-3235149 | MS.gene06165:CDS | 35.0% | |
| TGCGATTTCATGCAAAAACA+TGG | + | chr4.2:3234062-3234081 | MS.gene06165:intron | 35.0% | |
| TGTATTGTATGCGAGTCTAT+GGG | - | chr4.2:3233908-3233927 | None:intergenic | 35.0% | |
| TTAAGAACTGATCCTCCAAT+CGG | - | chr4.2:3234568-3234587 | None:intergenic | 35.0% | |
| TTATCAGAACAAGACTGAAC+TGG | - | chr4.2:3234610-3234629 | None:intergenic | 35.0% | |
| ! | AAACTTTACCCTCTTTTCCA+CGG | - | chr4.2:3233011-3233030 | None:intergenic | 35.0% |
| ! | AGTGCAAAAAATGGAAGTAC+TGG | - | chr4.2:3234524-3234543 | None:intergenic | 35.0% |
| ! | ATCTACTGGCAAGATTTTTG+TGG | - | chr4.2:3232846-3232865 | None:intergenic | 35.0% |
| ! | TCTGAATTTGTTTGCCATTC+AGG | + | chr4.2:3235308-3235327 | MS.gene06165:intron | 35.0% |
| ! | TGTGTTACAGATGATAATGC+TGG | + | chr4.2:3234683-3234702 | MS.gene06165:intron | 35.0% |
| ! | TTACAGATGATAATGCTGGA+AGG | + | chr4.2:3234687-3234706 | MS.gene06165:intron | 35.0% |
| !! | ATATACTTGGTGTTAAGGCT+TGG | + | chr4.2:3234893-3234912 | MS.gene06165:intron | 35.0% |
| !! | TGAACTATGACTTGTTCATG+CGG | + | chr4.2:3234482-3234501 | MS.gene06165:intron | 35.0% |
| !! | TTATAAAGTGGTGTCGTAGT+AGG | - | chr4.2:3233124-3233143 | None:intergenic | 35.0% |
| ACAAGTGCAAGTCATAAGGA+GGG | - | chr4.2:3232909-3232928 | None:intergenic | 40.0% | |
| AGTTTCTCTTCAATGAAGGC+TGG | - | chr4.2:3232975-3232994 | None:intergenic | 40.0% | |
| CATAAGGAGGGATACACTAT+GGG | - | chr4.2:3232897-3232916 | None:intergenic | 40.0% | |
| CCCAAGTTTCTCTTCAATGA+AGG | - | chr4.2:3232979-3232998 | None:intergenic | 40.0% | |
| CCTATAGAAGCAGTTAAGGA+CGG | + | chr4.2:3233068-3233087 | MS.gene06165:intron | 40.0% | |
| CGGCGATACAATGTTTGAAA+AGG | + | chr4.2:3233413-3233432 | MS.gene06165:CDS | 40.0% | |
| CTGTTCGTTAATCTCATCCA+TGG | - | chr4.2:3235108-3235127 | None:intergenic | 40.0% | |
| GAAATCGCATAAAAGCCATC+AGG | - | chr4.2:3234051-3234070 | None:intergenic | 40.0% | |
| GAATTATTGTCCGCTCCAAT+TGG | + | chr4.2:3235152-3235171 | MS.gene06165:CDS | 40.0% | |
| GCCTTCATTGAAGAGAAACT+TGG | + | chr4.2:3232975-3232994 | MS.gene06165:intron | 40.0% | |
| GTAGAAAATTGACAGGTGGT+TGG | - | chr4.2:3233954-3233973 | None:intergenic | 40.0% | |
| GTGTATTGTATGCGAGTCTA+TGG | - | chr4.2:3233909-3233928 | None:intergenic | 40.0% | |
| TAATGATGTTGATGCGACCA+TGG | + | chr4.2:3235088-3235107 | MS.gene06165:CDS | 40.0% | |
| TCATAAGGAGGGATACACTA+TGG | - | chr4.2:3232898-3232917 | None:intergenic | 40.0% | |
| TCCCTCAAACTGTAAACCAT+TGG | - | chr4.2:3232515-3232534 | None:intergenic | 40.0% | |
| TGAACCTGCTCCACTAATAA+TGG | - | chr4.2:3233334-3233353 | None:intergenic | 40.0% | |
| ! | GTACGTACCCCTTTTATTCT+TGG | - | chr4.2:3232667-3232686 | None:intergenic | 40.0% |
| ! | TAAGGCTTGGTTGTTGTTGT+TGG | + | chr4.2:3234906-3234925 | MS.gene06165:intron | 40.0% |
| ! | TGCTTCAAGTTCATCCTGAA+TGG | - | chr4.2:3235325-3235344 | None:intergenic | 40.0% |
| !! | GAACTATGACTTGTTCATGC+GGG | + | chr4.2:3234483-3234502 | MS.gene06165:intron | 40.0% |
| AAAGCTGCCAATTCTTCCTC+AGG | - | chr4.2:3235474-3235493 | None:intergenic | 45.0% | |
| AAATCAGCAGCTGCACCAAT+TGG | - | chr4.2:3235170-3235189 | None:intergenic | 45.0% | |
| ACGTAGATATAGGCTCCGTT+TGG | + | chr4.2:3233675-3233694 | MS.gene06165:intron | 45.0% | |
| AGAATGAAAGTGGGAGTGAC+TGG | + | chr4.2:3233180-3233199 | MS.gene06165:intron | 45.0% | |
| AGATATAGGCTCCGTTTGGA+TGG | + | chr4.2:3233679-3233698 | MS.gene06165:intron | 45.0% | |
| AGCAGAACTTGAAGAGCTAG+AGG | + | chr4.2:3235341-3235360 | MS.gene06165:CDS | 45.0% | |
| CACAAGTGCAAGTCATAAGG+AGG | - | chr4.2:3232910-3232929 | None:intergenic | 45.0% | |
| CAGGTAGTTCGGTAGGTTTA+GGG | + | chr4.2:3233096-3233115 | MS.gene06165:intron | 45.0% | |
| CCAGTTGCGTATTCATGATC+AGG | + | chr4.2:3233477-3233496 | MS.gene06165:CDS | 45.0% | |
| CCGTCCTTAACTGCTTCTAT+AGG | - | chr4.2:3233071-3233090 | None:intergenic | 45.0% | |
| CCTGATCATGAATACGCAAC+TGG | - | chr4.2:3233480-3233499 | None:intergenic | 45.0% | |
| GAATGAAAGTGGGAGTGACT+GGG | + | chr4.2:3233181-3233200 | MS.gene06165:intron | 45.0% | |
| GATACACTATGGGCTCTGTT+TGG | - | chr4.2:3232887-3232906 | None:intergenic | 45.0% | |
| GCAGAACTTGAAGAGCTAGA+GGG | + | chr4.2:3235342-3235361 | MS.gene06165:CDS | 45.0% | |
| TCAGGTAGTTCGGTAGGTTT+AGG | + | chr4.2:3233095-3233114 | MS.gene06165:intron | 45.0% | |
| ! | GGAGAGCGTGCTTCTTAAAA+AGG | + | chr4.2:3232602-3232621 | MS.gene06165:CDS | 45.0% |
| ! | TTTACCCTCTTTTCCACGGT+TGG | - | chr4.2:3233007-3233026 | None:intergenic | 45.0% |
| ! | TTTCCCTTGAGCTTTTGCGT+TGG | + | chr4.2:3234107-3234126 | MS.gene06165:intron | 45.0% |
| !! | GCTTCTGGAGTTGTAATTGC+AGG | - | chr4.2:3235396-3235415 | None:intergenic | 45.0% |
| !! | TACTGTTTCTGTGGTTGCCT+TGG | - | chr4.2:3234715-3234734 | None:intergenic | 45.0% |
| !! | TTAGGGTTGAGTTGACCGAT+TGG | + | chr4.2:3234550-3234569 | MS.gene06165:intron | 45.0% |
| !! | ATATATATATATTATATACT+TGG | + | chr4.2:3234880-3234899 | MS.gene06165:intron | 5.0% |
| !! | TAAACAAATATTATATTTAT+GGG | + | chr4.2:3234166-3234185 | MS.gene06165:intron | 5.0% |
| ACAGTAGCCGCATTGAGAAC+TGG | + | chr4.2:3234729-3234748 | MS.gene06165:CDS | 50.0% | |
| AGCACCAACCGTGGAAAAGA+GGG | + | chr4.2:3233000-3233019 | MS.gene06165:intron | 50.0% | |
| AGCACCAACGCAAAAGCTCA+AGG | - | chr4.2:3234114-3234133 | None:intergenic | 50.0% | |
| AGGCTGCAGCTGAAGTTGAA+AGG | + | chr4.2:3232622-3232641 | MS.gene06165:CDS | 50.0% | |
| GAACAGCAAGTAGAGCAGCT+TGG | + | chr4.2:3233448-3233467 | MS.gene06165:CDS | 50.0% | |
| GCACCAACGCAAAAGCTCAA+GGG | - | chr4.2:3234113-3234132 | None:intergenic | 50.0% | |
| GCCAATTCTTCCTCAGGAGT+GGG | - | chr4.2:3235468-3235487 | None:intergenic | 50.0% | |
| GGCTGCAGCTGAAGTTGAAA+GGG | + | chr4.2:3232623-3232642 | MS.gene06165:CDS | 50.0% | |
| TAGCACCAACCGTGGAAAAG+AGG | + | chr4.2:3232999-3233018 | MS.gene06165:intron | 50.0% | |
| TGCCAATTCTTCCTCAGGAG+TGG | - | chr4.2:3235469-3235488 | None:intergenic | 50.0% | |
| TTTGTATGCACCGGACGAGT+AGG | - | chr4.2:3235444-3235463 | None:intergenic | 50.0% | |
| ! | ACTTGTTCATGCGGGTTGAC+TGG | + | chr4.2:3234491-3234510 | MS.gene06165:intron | 50.0% |
| !! | CAATGCGGCTACTGTTTCTG+TGG | - | chr4.2:3234724-3234743 | None:intergenic | 50.0% |
| !! | GATAATGCTGGAAGGTGCCA+AGG | + | chr4.2:3234695-3234714 | MS.gene06165:CDS | 50.0% |
| !!! | TGCAGCTGCTGATTTTGACG+AGG | + | chr4.2:3235175-3235194 | MS.gene06165:CDS | 50.0% |
| AACTTGGGTAGCACCAACCG+TGG | + | chr4.2:3232991-3233010 | MS.gene06165:intron | 55.0% | |
| AGCAGCTGCACCAATTGGAG+CGG | - | chr4.2:3235165-3235184 | None:intergenic | 55.0% | |
| AGCCGCATTGAGAACTGGAG+CGG | + | chr4.2:3234734-3234753 | MS.gene06165:CDS | 55.0% | |
| AGCCGCTCCAGTTCTCAATG+CGG | - | chr4.2:3234739-3234758 | None:intergenic | 55.0% | |
| AGGTGGTTGGGCTTCTGATC+GGG | - | chr4.2:3233941-3233960 | None:intergenic | 55.0% | |
| CAGGTGGTTGGGCTTCTGAT+CGG | - | chr4.2:3233942-3233961 | None:intergenic | 55.0% | |
| GCAGTTAAGGACGGCAGATC+AGG | + | chr4.2:3233077-3233096 | MS.gene06165:intron | 55.0% | |
| GCATACAAAGCCCACTCCTG+AGG | + | chr4.2:3235455-3235474 | MS.gene06165:CDS | 55.0% | |
| GCCCACTCCTGAGGAAGAAT+TGG | + | chr4.2:3235464-3235483 | MS.gene06165:CDS | 55.0% | |
| GGACGGCAGATCAGGTAGTT+CGG | + | chr4.2:3233085-3233104 | MS.gene06165:intron | 55.0% | |
| GGCAGATCAGGTAGTTCGGT+AGG | + | chr4.2:3233089-3233108 | MS.gene06165:intron | 55.0% | |
| GGCAGCTTTGCAAGCTGAGA+TGG | + | chr4.2:3235485-3235504 | MS.gene06165:CDS | 55.0% | |
| GGGGTACGTACCAAAACCCA+TGG | + | chr4.2:3232676-3232695 | MS.gene06165:intron | 55.0% | |
| TGAGAGCAGAAGGGGAAGAC+AGG | + | chr4.2:3234332-3234351 | MS.gene06165:intron | 55.0% | |
| TGCGAGTCTATGGGTCCGTT+TGG | - | chr4.2:3233899-3233918 | None:intergenic | 55.0% | |
| ! | GGAGTGGGCTTTGTATGCAC+CGG | - | chr4.2:3235453-3235472 | None:intergenic | 55.0% |
| !! | AGAGCTAGAGGGTGCTGAGT+TGG | + | chr4.2:3235353-3235372 | MS.gene06165:CDS | 55.0% |
| !! | GGGTTGAGTTGACCGATTGG+AGG | + | chr4.2:3234553-3234572 | MS.gene06165:intron | 55.0% |
| CCTAGCTGGGACATGCACAG+AGG | - | chr4.2:3235418-3235437 | None:intergenic | 60.0% | |
| CCTCTGTGCATGTCCCAGCT+AGG | + | chr4.2:3235415-3235434 | MS.gene06165:CDS | 60.0% | |
| CTGTGCATGTCCCAGCTAGG+CGG | + | chr4.2:3235418-3235437 | MS.gene06165:CDS | 60.0% | |
| GGGACATGCACAGAGGCTTC+TGG | - | chr4.2:3235411-3235430 | None:intergenic | 60.0% | |
| AGCTAGGCGGCCTACTCGTC+CGG | + | chr4.2:3235431-3235450 | MS.gene06165:CDS | 65.0% | |
| GACGAGTAGGCCGCCTAGCT+GGG | - | chr4.2:3235431-3235450 | None:intergenic | 65.0% | |
| GGACGAGTAGGCCGCCTAGC+TGG | - | chr4.2:3235432-3235451 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 3232166 | 3235515 | 3232166 | ID=MS.gene06165 |
| chr4.2 | mRNA | 3232166 | 3235515 | 3232166 | ID=MS.gene06165.t1;Parent=MS.gene06165 |
| chr4.2 | exon | 3232166 | 3232255 | 3232166 | ID=MS.gene06165.t1.exon1;Parent=MS.gene06165.t1 |
| chr4.2 | CDS | 3232166 | 3232255 | 3232166 | ID=cds.MS.gene06165.t1;Parent=MS.gene06165.t1 |
| chr4.2 | exon | 3232579 | 3232678 | 3232579 | ID=MS.gene06165.t1.exon2;Parent=MS.gene06165.t1 |
| chr4.2 | CDS | 3232579 | 3232678 | 3232579 | ID=cds.MS.gene06165.t1;Parent=MS.gene06165.t1 |
| chr4.2 | exon | 3233413 | 3233498 | 3233413 | ID=MS.gene06165.t1.exon3;Parent=MS.gene06165.t1 |
| chr4.2 | CDS | 3233413 | 3233498 | 3233413 | ID=cds.MS.gene06165.t1;Parent=MS.gene06165.t1 |
| chr4.2 | exon | 3234693 | 3234784 | 3234693 | ID=MS.gene06165.t1.exon4;Parent=MS.gene06165.t1 |
| chr4.2 | CDS | 3234693 | 3234784 | 3234693 | ID=cds.MS.gene06165.t1;Parent=MS.gene06165.t1 |
| chr4.2 | exon | 3235082 | 3235196 | 3235082 | ID=MS.gene06165.t1.exon5;Parent=MS.gene06165.t1 |
| chr4.2 | CDS | 3235082 | 3235196 | 3235082 | ID=cds.MS.gene06165.t1;Parent=MS.gene06165.t1 |
| chr4.2 | exon | 3235330 | 3235515 | 3235330 | ID=MS.gene06165.t1.exon6;Parent=MS.gene06165.t1 |
| chr4.2 | CDS | 3235330 | 3235515 | 3235330 | ID=cds.MS.gene06165.t1;Parent=MS.gene06165.t1 |
| Gene Sequence |
| Protein sequence |
