AlfalfaGEDB | MS.gene062781

M. sativa cultivar XinJiangDaYe / MS.gene062781

KEGG: K15728
GO: -
PFAM: PF08235.16

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062781.t1	KEH40041.1	93	383	20	2	1	382	1	377	1.50E-202	715.3

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062781.t1	Q9FMN2	80.2	248	48	1	133	380	679	925	7.5e-118	425.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062781.t1	G7I3N3	93.0	383	20	2	1	382	141	517	1.1e-202	715.3

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050105	MS.gene062781	0.82969	4.47E-55	-1.69E-46
MS.gene051122	MS.gene062781	0.815763	7.83E-52	-1.69E-46
MS.gene051935	MS.gene062781	0.817172	3.78E-52	-1.69E-46
MS.gene05216	MS.gene062781	0.808869	2.51E-50	-1.69E-46
MS.gene052586	MS.gene062781	0.806064	9.86E-50	-1.69E-46
MS.gene052674	MS.gene062781	0.806789	6.93E-50	-1.69E-46
MS.gene052675	MS.gene062781	0.807715	4.41E-50	-1.69E-46
MS.gene052677	MS.gene062781	0.810848	9.40E-51	-1.69E-46
MS.gene054468	MS.gene062781	0.815941	7.14E-52	-1.69E-46
MS.gene054479	MS.gene062781	0.85419	1.45E-61	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062781.t1	MTR_1g019740	92.950	383	20	2	1	382	1	377	0.0	724
MS.gene062781.t1	MTR_1g019740	92.950	383	20	2	1	382	141	517	0.0	723
MS.gene062781.t1	MTR_3g101590	82.258	248	43	1	133	380	581	827	5.55e-147	437
MS.gene062781.t1	MTR_7g100370	73.438	256	66	2	126	380	608	862	7.05e-134	404
MS.gene062781.t1	MTR_1g067380	74.590	244	61	1	137	380	678	920	3.59e-133	404
MS.gene062781.t1	MTR_3g101590	82.390	159	28	0	133	291	581	739	3.46e-89	285

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene062781.t1	AT5G42870	80.242	248	48	1	133	380	679	925	1.00e-143	431
MS.gene062781.t1	AT5G42870	79.435	248	45	2	133	380	679	920	1.42e-139	420
MS.gene062781.t1	AT3G09560	74.390	246	63	0	135	380	654	899	1.27e-131	399
MS.gene062781.t1	AT3G09560	74.390	246	63	0	135	380	654	899	1.27e-131	399
MS.gene062781.t1	AT3G09560	74.390	246	63	0	135	380	654	899	1.27e-131	399
MS.gene062781.t1	AT3G09560	74.390	246	63	0	135	380	654	899	1.27e-131	399
MS.gene062781.t1	AT5G42870	80.976	205	39	0	133	337	679	883	1.20e-116	360

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Find 89 sgRNAs with CRISPR-Local

Find 303 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAGGGAGTGATTAA+GGG	0.490787	1.4:+3526185	MS.gene062781:CDS
AAATCTCGAACTGTCAACAT+TGG	0.612310	1.4:+3526284	MS.gene062781:CDS
AAATTACCACAATCCTTTAC+CGG	0.427602	1.4:-3526224	None:intergenic
AACTGTCAACATTGGTCGAA+GGG	0.556516	1.4:+3526292	MS.gene062781:CDS
AAGGGATTGTTCTGTTAAGA+AGG	0.468316	1.4:+3526310	MS.gene062781:CDS
AAGGTTGAATAGGAATTGTC+TGG	0.463826	1.4:-3529807	None:intergenic
AATATTTATAATTAATCCCA+AGG	0.543298	1.4:+3530377	MS.gene062781:CDS
ACCTATGATGGGGATGCGGC+AGG	0.483533	1.4:+3526418	MS.gene062781:CDS
ACCTGCCGCATCCCCATCAT+AGG	0.445358	1.4:-3526419	None:intergenic
ACCTGCTCAGATGAGTCTGT+AGG	0.608192	1.4:-3530582	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATTGAGGGAGTGATTA+AGG	+	chr1.4:3526184-3526203	MS.gene062781:CDS	30.0%
AAAATTGAGGGAGTGATTAA+GGG	+	chr1.4:3526185-3526204	MS.gene062781:CDS	30.0%
AAATCTCCACTGTATAAAGT+AGG	+	chr1.4:3526610-3526629	MS.gene062781:intron	30.0%
AAATTACCACAATCCTTTAC+CGG	-	chr1.4:3526227-3526246	None:intergenic	30.0%
AAATTGCATGTTTAGAGGTT+TGG	+	chr1.4:3530165-3530184	MS.gene062781:intron	30.0%
AAGATTAACGAAGTGAATCT+TGG	-	chr1.4:3526947-3526966	None:intergenic	30.0%
AAGCATAAGTGTATTAAGCT+TGG	+	chr1.4:3528526-3528545	MS.gene062781:intron	30.0%
AAGTTGAATTTAATGCTTCC+AGG	+	chr1.4:3530248-3530267	MS.gene062781:intron	30.0%
AAGTTTGATACTCTATCCTA+TGG	-	chr1.4:3528596-3528615	None:intergenic	30.0%
AATCAAACATCATTTACCTC+AGG	-	chr1.4:3526053-3526072	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	3525807	3530793	3525807	ID=MS.gene062781
chr1.4	mRNA	3525807	3530793	3525807	ID=MS.gene062781.t1;Parent=MS.gene062781
chr1.4	exon	3525807	3526055	3525807	ID=MS.gene062781.t1.exon1;Parent=MS.gene062781.t1
chr1.4	CDS	3525807	3526055	3525807	ID=cds.MS.gene062781.t1;Parent=MS.gene062781.t1
chr1.4	exon	3526179	3526439	3526179	ID=MS.gene062781.t1.exon2;Parent=MS.gene062781.t1
chr1.4	CDS	3526179	3526439	3526179	ID=cds.MS.gene062781.t1;Parent=MS.gene062781.t1
chr1.4	exon	3527365	3527438	3527365	ID=MS.gene062781.t1.exon3;Parent=MS.gene062781.t1
chr1.4	CDS	3527365	3527438	3527365	ID=cds.MS.gene062781.t1;Parent=MS.gene062781.t1
chr1.4	exon	3529326	3529410	3529326	ID=MS.gene062781.t1.exon4;Parent=MS.gene062781.t1
chr1.4	CDS	3529326	3529410	3529326	ID=cds.MS.gene062781.t1;Parent=MS.gene062781.t1
chr1.4	exon	3529749	3529835	3529749	ID=MS.gene062781.t1.exon5;Parent=MS.gene062781.t1
chr1.4	CDS	3529749	3529835	3529749	ID=cds.MS.gene062781.t1;Parent=MS.gene062781.t1
chr1.4	exon	3529938	3530010	3529938	ID=MS.gene062781.t1.exon6;Parent=MS.gene062781.t1
chr1.4	CDS	3529938	3530010	3529938	ID=cds.MS.gene062781.t1;Parent=MS.gene062781.t1
chr1.4	exon	3530138	3530181	3530138	ID=MS.gene062781.t1.exon7;Parent=MS.gene062781.t1
chr1.4	CDS	3530138	3530181	3530138	ID=cds.MS.gene062781.t1;Parent=MS.gene062781.t1
chr1.4	exon	3530270	3530398	3530270	ID=MS.gene062781.t1.exon8;Parent=MS.gene062781.t1
chr1.4	CDS	3530270	3530398	3530270	ID=cds.MS.gene062781.t1;Parent=MS.gene062781.t1
chr1.4	exon	3530501	3530602	3530501	ID=MS.gene062781.t1.exon9;Parent=MS.gene062781.t1
chr1.4	CDS	3530501	3530602	3530501	ID=cds.MS.gene062781.t1;Parent=MS.gene062781.t1
chr1.4	exon	3530749	3530793	3530749	ID=MS.gene062781.t1.exon10;Parent=MS.gene062781.t1
chr1.4	CDS	3530749	3530793	3530749	ID=cds.MS.gene062781.t1;Parent=MS.gene062781.t1

Gene Sequence

>MS.gene062781

ATGAATGATTCTCGGAATTCGAGAATAAATAGATTTGTATTGGGGCCAAGGTCCAGTGGTGATGCAGATTCAGCGGAGCGTGCTGAGGTTGCAGCCAAGTTGTTGGATTTAAGGTGGTCTACAAATCTCTCTTTTGATGAACTTTCCCATACGGAAAGAAAGAAAACTCAGGGTGTTAACTTGGACAAGGAGAAAGTCAAGTTTGAATCTGGCAAGGTTTTGCGCGCTACAACTGTGCAGCTACCTGAGGTAAATGATGTTTGATTTTATTCTTGGTATTGTTAGAGTATTTGCTTAATGAGAATAGGTACAAGACTGAAAAGTGTGTTCTGTTTTGGTTTTTGATACTGATATGTTATAGTTATTGTTTAGGGTGGAAAAATTGAGGGAGTGATTAAGGGTGTTGATCTAGAGATACCGGTAAAGGATTGTGGTAATTTTGATGTTGCGGATGTTGGAAACATAGCGAAGTTCCAAAAATCTCGAACTGTCAACATTGGTCGAAGGGATTGTTCTGTTAAGAAGGTTAGTGTAAATACTCCAACTTCTGAACAACTGTCATCCTTGAATCTGAAGGAAGGGAGAAACACAATAACCTTCTGTTTCTCTACACCTATGATGGGGATGCGGCAGGTTAGTAATGAATAAAATTCTTCATTTTTATTGTTGTTTGGCAAAAGTACTTCTCTTGGGAAATAAAAAAAATGAATATGTGAAGAAGAATGGCGTCACAGTTTAGAATGTGAAAAACTATCTTAATCAATGCGAATAAGAAAAATCAAGAGATCTTATAATTCAAACAAAAATCTCCACTGTATAAAGTAGGATTACAACGACACTCTTAATATGGGAGAATTGGCCTCGTTTTTATCTAACTAGGCTGGTTTACAATATCTCTCACCAAAAATGATGAAAATCTATATAATATTCCTGAATCCAAATTCAGTGTTGTCATGAAATCATTCAATCTCTGCAATCATTAAATTGGAGCTGTTGGATGAAGATCAGGCAACTCTAATTCCGAGTTTTGAATTCAATTTGTTGAAGTCTGAATTTGAGCAGTCCGACATTGATCTTACTTTTCTGGTTGACTGATTACAATGAGTGCATGGTTTTATGACTGTCATAAATCTTGTTCCAAGATTCACTTCGTTAATCTTACCTTTCTCTCGAAGAGGTTTACGAGAAATCACTGTCACTTCTATTATTTTTGGAGACAAACTTCGTTGCTTCTTTTAACTCCTTATAAGTCCATCATGTATTGTGGAGGGATGTGGTTTCATACTTTCATACAAAACTGAGATAGTAGACTTTTATTTGTTCTCACATTTCCTAGAAGCTTTGAAAGTGTAATCTTCATTTTTTAAGATAATGCGATAATCTTCAAAAATCTAGGATTAACTCCTAGACCTTGGAATTTTCTATCTTTTATTTCCCATACTTTGATATGATCAAGATTGTATATTTGCATTATGGAGGGATTTCCTATAACTTCTCTTTCATTTTCTTGTTGTTTATCTTATTGAAATCTCTTTTATTATTGTTTCTTTTATATTAGATTGATGCTCGGATATTTTTGTGGAAATGGAATACTCGTATAGTGATATCAGATGTGGATGGGACTATTACAAGGTGAGGATATATCTTATTGAAAAGGAATCTGTTTGCAAAATAGATTTTATATTCGGACAAGGCACTTGTTAATATTTATTCTTTAGATAGTCACTTGCTTTTTCATAGTTAGTTTGATCTTATCTTGTAATTTGTTAGATTGTTGAGATATCAATCTTTGAGATCATGAGAACAGGGTAAATAGGGAGAATTGAAGAGTAAAATTCTGAATTGTATTGATCAATTTGTTTCTCTTACAAGCACAATAGGGAAGAGTACAAAGCTAAGCTACTCACTACTCTGTCCTAGATGAGAGCTGTCAGTTAGGAAGTTACAGTAGATTCTAACAGAATCTAACTGACATAAAATAACTGAGTTACATTCTCTAATACAATTTATTCATGCTTTGAAAGTTGGTATATAAAGAAAAAAAAGTTCTACAGCAGTCTTGTTGAAATATTGACACCGAGTGGATCAATGGTTCCTTAGAGTGTGTCATGTCTATTTCAAACCCAACAAGGAATATCCATGCCATGATGAATCTCTCTAGAGCTTCCTGATTCATTTTTAATCAAAGACAGTGTATCTATCAACAGATACATTTTTCTCACATATGACACGGTTGAGTCTTAGAGAGAAGACCCGTAGACGCCGTGGTAAGAAGAGTAGATCAAATGGAGGAGAGTCAGGTTAAAAGAGGTAGAGGAAGACCTAAGAAAACTATTAGAGAAACCATTAGAAAAGATTTAGAGGTCAATGAGTTGGATCCAAATATGGTCTTTGATAGAACATTATGGCGGCATTTGATCCATGTAGCCGACCCCACTTAGTGGGATAAGGCGGTGTTGTTGTTGTTGTTGATGACACGGTTGAGTCTTAGTACTTCTCTTATCACTTGAAGAAAACTAGACATGGTTTCGACAGTCTGTGTCTAGTTTATAGTGCTAATGAGATACTGAGGTCTGAGCATCTGCGTGTTTAGTATTCCCTGCTCTTAAGAGAATCGGATATTCTTTATTAATTAGTTGCTTTTTTGTTTCACTTTCTGTCATGATTTTCTGTAATTGGATGGTCCTAATTGAGGAACTATGTAAGGTAAATACGGTACAAGCATAAGTGTATTAAGCTTGGAGTATATATGCTTTTGGAAAACTGCACTTTGCTTTGTATTTTCACCATAGGATAGAGTATCAAACTTAGTCTGGAATTATCTTTGATATTAATGTAGCCTGTTTGCGCAGTGCTTGGTCTCATTCACTTATACGCCGACTTCTTTGTTTAATAAACTTATGTTCGAAATGAAGTTAGAGTTGCAGTAGTCACTTTCTTATAAAGATAAACTTTATGAGGCCATACTGATGTCAATTAGATTCTTGTAGATGGAGTTTAACCTTTATTCGTCTGTAATTATGTATTCCTGTTGATTTCTTTGCTAAACTATTAATTGAGCTATACAACCTAAACTAGCCAGTAGCATTCACTGATAATGATTGGACATGAAATATTTTTAGTGATAAAGAATCATCCTTTTATTGTTCCATTCTGGAGGTGATTAATGTAAAATTTGGCCAAAATTCACCTAATACTTCAACTATTATTGTCATACCTTTAAGATCGAATTGATTGACAATTTATGAAGTACTATTGTGGGAAATTCATGTTATTAGAAATGTCTTGGTCACTTTTAAGATGATAAGGTAGAGTTTGACATATGTAAGACTGGTTCCCCAGAATTCAATCTGCATGATGATAGATGAACTCCGGATAGTACACTTGTAGAATTTAAAATTTCTTTTCTTTCTTCCTGCAACCATTTTTAACATCCAGATATATGCCTTTGTTCTGGAGCTTAATTCTATGTCATGCTGCGATAATGTTAATTTTTCTCTCTTGTTTTATGTGTTGCAGGTCAGACGTTCTAGGTCAATTCATGCCTTTAGTTGGGATTGACTGGTCACAGACAGGAGTTGCTCATTTATTTTCAGAAATCAAGGTATGTTTATCTTACTTGCATCTTTAAATGTTTTGAGATTACTATAATATGTAATATTTTGTTCTGTTGTTGAATCTTGAATACATTGTTCATAAATCACTGCGTGTTCTTAAAACACGTGGTCTCAAAACAACTAATCAGTTGTTTTATCTGTTAAGGCAAAAAAGTGTAAGACTTATATTTTGCATATTTGATCATTCTAATTATTAATTGATGTTCTAGGACTTTTAGATTGAAAACTGTCCTTTACCCTGCCCACACTAACAATCTTCTGGTTTTTATTTATATATCTTGTGCGTATTTATGGAATTTTTCCTTGCCTATTCCACACATCACAGGAAAATGGCTACCAGATACTTTTTCTCAGTGCTCGTGCAATTTCTCAGGCCCATCACACCAGACAATTCCTATTCAACCTTAACCAGGTGATACATAAATTTGAAATATATTTATATGTCAACATTGTACAAAACAAGAAGACAAAAGAAGGAAGTTTACATTCTCCTGTTTGTTTTGTTATGATGCAGGATGGGAAAGTCTTACCAGATGGTCCTGTTGTAATTTCCCCTGACGGACTTTTTCCTTCTCTATATAGAGAAGGTATTCAGTCAACTTTTCTTTCTATTAGTTTTCCTCACTCTTCCCCTTCTATAGTAGTTATGTTTTTTCAGCTCTAGCAATCTTTTCCTAAACATACTGATTATATATATTTTCTTTCTATTTTCAGTTATCCGCAGAGCTCCTCACGAATTCAAAATTGCATGTTTAGAGGTTTGGTTTCTATGTTCACATTTGACATGATTTAAATAATTTGAGTATCGTCATTGCTAGGTTAAAAAGTTGAATTTAATGCTTCCAGGACATCAGGGCACTTTTTCCTCCTGATTCAAATCCTTTTTATGCTGGTTTTGGAAATAGAGACACCGATGAAATCAGTTACCTTAAGGTTGGAATCGCTAAAGGAAAAATATTTATAATTAATCCCAAGGTAATGAGTCTCTCATATTATTTTACAACAAATAAATACTAAAATTTCTTGAATATGTTCTGCCAAACTTCCGTTCTCATGTAGTCATGTCTAAGGTTTCAGGGTGAGATTTCTGTAAACCGACGTTGCTTAGACACAAAATCATACACTTCTCTTCATGCTCTCGTGAACGGAATGTTCCCCCCTACAGACTCATCTGAGCAGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCATCTCTCTCCATATATATGACGTCACAAGGATTTGTTTATGATTTAACCCTTGTGCTTGCTGAACATTGGTTGCAGGAGGATTTCAATTCCTGGAATTTCTGGAAGTTGCCCTCTTTCTAA

Protein sequence

>MS.gene062781.t1

MNDSRNSRINRFVLGPRSSGDADSAERAEVAAKLLDLRWSTNLSFDELSHTERKKTQGVNLDKEKVKFESGKVLRATTVQLPEGGKIEGVIKGVDLEIPVKDCGNFDVADVGNIAKFQKSRTVNIGRRDCSVKKVSVNTPTSEQLSSLNLKEGRNTITFCFSTPMMGMRQIDARIFLWKWNTRIVISDVDGTITRSDVLGQFMPLVGIDWSQTGVAHLFSEIKENGYQILFLSARAISQAHHTRQFLFNLNQDGKVLPDGPVVISPDGLFPSLYREVIRRAPHEFKIACLEDIRALFPPDSNPFYAGFGNRDTDEISYLKVGIAKGKIFIINPKGEISVNRRCLDTKSYTSLHALVNGMFPPTDSSEQEDFNSWNFWKLPSF