AlfalfaGEDB | MS.gene063524

M. sativa cultivar XinJiangDaYe / MS.gene063524

KEGG: -
GO: -
PFAM: PF13639.9

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063524.t1	XP_013458034.1	84	424	66	2	1	424	1	422	4.40E-171	610.9

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063524.t1	P0CH30	47.7	107	56	0	310	416	172	278	1.8e-24	115.2

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063524.t1	A0A072V1R8	84.0	424	66	2	1	424	1	422	3.2e-171	610.9

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050654	MS.gene063524	0.817483	3.22E-52	-1.69E-46
MS.gene051541	MS.gene063524	0.824752	6.81E-54	-1.69E-46
MS.gene051631	MS.gene063524	-0.818119	2.31E-52	-1.69E-46
MS.gene052016	MS.gene063524	0.817255	3.63E-52	-1.69E-46
MS.gene052674	MS.gene063524	0.804547	2.05E-49	-1.69E-46
MS.gene052675	MS.gene063524	0.802816	4.69E-49	-1.69E-46
MS.gene052677	MS.gene063524	0.804856	1.77E-49	-1.69E-46
MS.gene055327	MS.gene063524	0.805731	1.16E-49	-1.69E-46
MS.gene058429	MS.gene063524	0.844329	8.09E-59	-1.69E-46
MS.gene06052	MS.gene063524	0.81803	2.42E-52	-1.69E-46
MS.gene060850	MS.gene063524	0.807311	5.38E-50	-1.69E-46
MS.gene060851	MS.gene063524	0.812107	5.01E-51	-1.69E-46
MS.gene060852	MS.gene063524	0.807919	3.99E-50	-1.69E-46
MS.gene060932	MS.gene063524	0.825316	5.01E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063524.t1	MTR_4g110100	94.588	425	21	2	1	425	1	423	0.0	800
MS.gene063524.t1	MTR_6g016350	31.731	416	205	12	40	423	4	372	2.00e-35	134
MS.gene063524.t1	MTR_7g074170	46.087	115	62	0	303	417	286	400	2.13e-30	123
MS.gene063524.t1	MTR_6g079660	45.528	123	67	0	294	416	167	289	2.88e-30	120
MS.gene063524.t1	MTR_1g114620	43.478	138	69	4	283	414	182	316	1.42e-29	117
MS.gene063524.t1	MTR_1g114320	47.899	119	59	1	301	416	130	248	1.27e-28	114
MS.gene063524.t1	MTR_2g097620	39.640	111	63	3	309	416	134	243	7.35e-23	99.4
MS.gene063524.t1	MTR_4g064570	42.308	104	56	3	309	409	126	228	4.39e-21	94.4
MS.gene063524.t1	MTR_3g083480	36.522	115	63	2	305	415	186	294	3.08e-19	89.0
MS.gene063524.t1	MTR_5g088720	36.190	105	64	2	303	407	149	250	1.15e-17	84.0
MS.gene063524.t1	MTR_5g088720	36.190	105	64	2	303	407	144	245	1.30e-17	83.6
MS.gene063524.t1	MTR_5g088720	36.190	105	64	2	303	407	190	291	1.32e-17	84.3
MS.gene063524.t1	MTR_3g068005	47.500	80	33	2	335	410	170	244	2.08e-17	84.0
MS.gene063524.t1	MTR_5g041330	43.210	81	42	1	332	412	79	155	3.52e-17	80.5
MS.gene063524.t1	MTR_3g072630	34.259	108	68	2	303	410	165	269	5.06e-17	82.0
MS.gene063524.t1	MTR_1g051105	33.621	116	71	3	305	420	105	214	7.32e-17	80.5
MS.gene063524.t1	MTR_3g072630	34.259	108	68	2	303	410	165	269	8.00e-17	81.6
MS.gene063524.t1	MTR_5g041310	40.217	92	49	2	323	412	78	165	8.71e-17	79.3
MS.gene063524.t1	MTR_1g014710	40.244	82	47	1	335	414	204	285	5.27e-16	79.0
MS.gene063524.t1	MTR_5g080350	44.000	75	41	1	336	410	168	241	1.78e-15	78.2
MS.gene063524.t1	MTR_2g061790	58.824	51	21	0	354	404	101	151	2.82e-15	75.1
MS.gene063524.t1	MTR_2g007340	52.308	65	30	1	342	406	182	245	4.20e-15	76.3
MS.gene063524.t1	MTR_0067s0100	29.333	150	97	5	265	407	88	235	9.31e-15	74.7
MS.gene063524.t1	MTR_3g088080	42.466	73	39	2	336	408	15	84	1.03e-13	67.0
MS.gene063524.t1	MTR_6g032960	27.273	110	72	3	305	412	183	286	4.12e-13	70.5
MS.gene063524.t1	MTR_3g025510	41.667	72	41	1	332	403	76	146	3.46e-12	64.7
MS.gene063524.t1	MTR_1g047180	36.264	91	51	3	316	406	644	727	5.00e-12	68.2
MS.gene063524.t1	MTR_2g078440	47.917	48	25	0	362	409	253	300	5.70e-12	67.0
MS.gene063524.t1	MTR_3g081030	44.286	70	37	2	338	406	96	164	6.63e-12	65.1
MS.gene063524.t1	MTR_3g025550	48.936	47	24	0	361	407	16	62	7.14e-12	60.8
MS.gene063524.t1	MTR_4g056590	46.970	66	31	3	340	404	104	166	7.34e-11	61.6
MS.gene063524.t1	MTR_3g031000	43.836	73	32	3	336	408	279	342	7.77e-11	63.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene063524.t1	AT5G60820	34.852	439	206	16	8	409	24	419	2.46e-53	184
MS.gene063524.t1	AT5G08139	39.918	243	110	6	182	418	153	365	2.77e-44	158
MS.gene063524.t1	AT3G02340	36.082	291	143	11	132	418	140	391	6.61e-33	128
MS.gene063524.t1	AT3G02340	36.082	291	143	11	132	418	140	391	6.61e-33	128
MS.gene063524.t1	AT5G15820	52.941	102	48	0	316	417	245	346	7.57e-33	127
MS.gene063524.t1	AT3G19950	45.946	111	60	0	306	416	160	270	1.36e-27	112
MS.gene063524.t1	AT3G19950	45.946	111	60	0	306	416	218	328	3.57e-27	112
MS.gene063524.t1	AT3G19950	45.946	111	60	0	306	416	218	328	3.57e-27	112
MS.gene063524.t1	AT5G01980	43.697	119	66	1	303	421	292	409	7.95e-27	112
MS.gene063524.t1	AT1G55530	33.557	149	87	3	268	411	131	272	7.47e-22	96.7
MS.gene063524.t1	AT1G55530	33.557	149	87	3	268	411	131	272	7.47e-22	96.7
MS.gene063524.t1	AT5G64920	39.597	149	80	5	278	417	167	314	8.30e-22	96.3
MS.gene063524.t1	AT1G55530	37.736	106	60	1	306	411	140	239	1.83e-21	94.7
MS.gene063524.t1	AT2G40830	38.835	103	62	1	306	408	135	236	2.43e-21	94.7
MS.gene063524.t1	AT2G40830	38.835	103	62	1	306	408	135	236	2.43e-21	94.7
MS.gene063524.t1	AT2G40830	38.835	103	62	1	306	408	135	236	2.43e-21	94.7
MS.gene063524.t1	AT2G40830	38.835	103	62	1	306	408	135	236	2.43e-21	94.7
MS.gene063524.t1	AT3G56580	34.328	134	82	3	274	407	104	231	1.68e-20	92.0
MS.gene063524.t1	AT3G56580	34.328	134	82	3	274	407	104	231	1.68e-20	92.0
MS.gene063524.t1	AT3G56580	34.328	134	82	3	274	407	104	231	1.68e-20	92.0
MS.gene063524.t1	AT1G68180	44.248	113	54	4	296	405	75	181	4.68e-20	89.0
MS.gene063524.t1	AT3G13430	35.965	114	67	2	306	418	173	281	1.42e-18	86.7
MS.gene063524.t1	AT3G13430	35.965	114	67	2	306	418	173	281	1.42e-18	86.7
MS.gene063524.t1	AT3G13430	35.965	114	67	2	306	418	173	281	1.42e-18	86.7
MS.gene063524.t1	AT3G13430	35.965	114	67	2	306	418	173	281	1.42e-18	86.7
MS.gene063524.t1	AT1G60360	44.578	83	46	0	335	417	197	279	1.90e-18	86.3
MS.gene063524.t1	AT5G20910	43.902	82	44	1	335	414	201	282	1.99e-18	85.9
MS.gene063524.t1	AT3G46620	48.718	78	39	1	332	409	186	262	5.79e-18	85.5
MS.gene063524.t1	AT3G10815	41.860	86	47	2	335	420	95	177	7.75e-18	82.0
MS.gene063524.t1	AT2G39720	45.455	77	41	1	335	410	173	249	3.69e-17	83.2
MS.gene063524.t1	AT2G39720	45.455	77	41	1	335	410	173	249	3.69e-17	83.2
MS.gene063524.t1	AT4G26400	34.783	115	66	2	310	424	195	300	6.51e-17	82.0
MS.gene063524.t1	AT4G26400	34.783	115	66	2	310	424	195	300	6.51e-17	82.0
MS.gene063524.t1	AT1G26800	38.824	85	47	1	333	417	89	168	8.61e-17	79.0
MS.gene063524.t1	AT5G56340	34.906	106	63	1	303	408	206	305	1.50e-16	81.3
MS.gene063524.t1	AT5G59550	44.872	78	42	1	332	409	170	246	3.05e-16	80.5
MS.gene063524.t1	AT3G60080	47.222	72	37	1	338	408	144	215	3.19e-16	79.3
MS.gene063524.t1	AT5G59550	44.872	78	42	1	332	409	275	351	4.28e-16	80.5
MS.gene063524.t1	AT1G14200	41.333	75	43	1	333	407	81	154	4.40e-15	73.6
MS.gene063524.t1	AT2G44330	50.980	51	25	0	362	412	96	146	1.03e-14	72.4
MS.gene063524.t1	AT3G30460	40.909	88	47	2	317	403	55	138	3.21e-14	70.1
MS.gene063524.t1	AT3G30460	40.909	88	47	2	317	403	91	174	6.66e-14	70.1
MS.gene063524.t1	AT5G02750	44.615	65	35	1	362	425	214	278	3.60e-13	70.1
MS.gene063524.t1	AT1G04790	40.299	67	37	1	337	403	567	630	1.94e-11	66.2
MS.gene063524.t1	AT1G22670	40.625	64	36	2	342	403	211	274	2.74e-11	65.5
MS.gene063524.t1	AT2G29840	29.091	110	76	2	302	410	184	292	8.53e-11	63.2
MS.gene063524.t1	AT1G71980	38.462	65	38	2	341	403	210	274	9.60e-11	63.9

Find 109 sgRNAs with CRISPR-Local

Find 118 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCCTAATCCCTTTACCTTAT+TGG	0.055693	8.4:-17681843	MS.gene063524:CDS
GTGATTTCAGAGCCTGATTT+TGG	0.169345	8.4:-17681007	MS.gene063524:CDS
GACAGTTTAAGTTTCGATTT+AGG	0.208807	8.4:-17681631	MS.gene063524:CDS
GAAATCACATGATAAGTTTC+AGG	0.233474	8.4:+17681022	None:intergenic
TTATGCCTTGGTTGGGGATT+AGG	0.241740	8.4:-17680736	MS.gene063524:CDS
ACAGTTTAAGTTTCGATTTA+GGG	0.277887	8.4:-17681630	MS.gene063524:CDS
GTTGTGATTGGATGGGAATT+CGG	0.300414	8.4:+17681771	None:intergenic
GCCAATAAGGTAAAGGGATT+AGG	0.319581	8.4:+17681842	None:intergenic
GTTACTATGTTGAGGGTAGA+TGG	0.329877	8.4:-17681121	MS.gene063524:CDS
TCGTTTAACGATTGATGAAT+TGG	0.332153	8.4:+17681664	None:intergenic
CCAATAAGGTAAAGGGATTA+GGG	0.339692	8.4:+17681843	None:intergenic
TTTGATGATAGGGAAATTCT+TGG	0.340057	8.4:-17681268	MS.gene063524:CDS
AAAGCGGTGGTTGTTGTGAT+TGG	0.354372	8.4:+17681759	None:intergenic
TACAGAAGCCGGTGGCTTAC+TGG	0.359157	8.4:+17680907	None:intergenic
ATTCTTGGTTTGATGTTTGC+TGG	0.360137	8.4:-17681253	MS.gene063524:CDS
TTGTGATTGGATGGGAATTC+GGG	0.380919	8.4:+17681772	None:intergenic
GATCTAGAAACCGTAATATC+AGG	0.385009	8.4:+17681544	None:intergenic
TTTGAGTGGGAGGAAGTTGA+TGG	0.386369	8.4:-17681298	MS.gene063524:CDS
GATTGTATTATGCCTTGGTT+GGG	0.400381	8.4:-17680743	MS.gene063524:CDS
ATGGTGGTGGCTTTGATGAT+AGG	0.400699	8.4:-17681279	MS.gene063524:CDS
GTAATTGAGGAAGAAGAAAT+CGG	0.403339	8.4:-17681382	MS.gene063524:CDS
TCATCATTGTCCCCAAAATC+AGG	0.416729	8.4:+17680995	None:intergenic
AAGTGCTCCGAGCCAACATT+GGG	0.417324	8.4:+17680648	None:intergenic
TCGGAAGTGGAAGGCCAATA+AGG	0.419335	8.4:+17681829	None:intergenic
ACAATACGTAAACCGTCAAT+TGG	0.423490	8.4:+17681517	None:intergenic
TCAAAATCCTCGTAAATTTG+AGG	0.425794	8.4:+17681316	None:intergenic
GGTGAAGAAGTTGATAGAAA+TGG	0.434719	8.4:-17681472	MS.gene063524:CDS
ATGACGAAAACAGTAACAAT+AGG	0.435849	8.4:-17681225	MS.gene063524:CDS
GAGATTGTTCAACGCGTTGT+TGG	0.452185	8.4:+17681707	None:intergenic
TGGGAGGAAGTTGATGGTGG+TGG	0.457851	8.4:-17681292	MS.gene063524:CDS
GAAACTTAAACTGTCGAAAA+CGG	0.459293	8.4:+17681639	None:intergenic
GGAAACTCACAGCGACAAAC+AGG	0.463610	8.4:+17680704	None:intergenic
ACGTATTGTTGAGATTGATT+CGG	0.464900	8.4:-17681503	MS.gene063524:CDS
TTGGGATTCGCTTCAGTTGG+AGG	0.465065	8.4:-17681344	MS.gene063524:CDS
TGACTTTAACAATGTAATTG+AGG	0.465146	8.4:-17681395	MS.gene063524:CDS
ATCGAAGTCGAGATCGGAAG+TGG	0.465457	8.4:+17681816	None:intergenic
TCGTTGGGATTCGCTTCAGT+TGG	0.470738	8.4:-17681347	MS.gene063524:CDS
CGGTGGTTGTTGTGATTGGA+TGG	0.471139	8.4:+17681763	None:intergenic
AGAAGAGGTTACTATGTTGA+GGG	0.481328	8.4:-17681128	MS.gene063524:CDS
TCTAGATCTGATCCAATTGA+CGG	0.487333	8.4:-17681529	MS.gene063524:CDS
TGATTGTATTATGCCTTGGT+TGG	0.494779	8.4:-17680744	MS.gene063524:CDS
CAAGTGCTCCGAGCCAACAT+TGG	0.495300	8.4:+17680647	None:intergenic
GAGAAGAGGTTAACATGATG+AGG	0.499839	8.4:-17681099	MS.gene063524:CDS
GAAGTTGATAGAAATGGAAA+CGG	0.501457	8.4:-17681466	MS.gene063524:CDS
GAGGGACGGAAAATCTTGAT+TGG	0.501577	8.4:-17681069	MS.gene063524:CDS
GAGTGGGAGGAAGTTGATGG+TGG	0.503222	8.4:-17681295	MS.gene063524:CDS
TTTGATCATCGTCGGGTTCG+TGG	0.503631	8.4:+17681866	None:intergenic
GAAGAACACGAGGAAGAAGA+TGG	0.504834	8.4:-17681151	MS.gene063524:CDS
TTCGTTTACCAGTAAGCCAC+CGG	0.508581	8.4:-17680915	MS.gene063524:CDS
CATCGTCGGGTTCGTGGTGG+TGG	0.509457	8.4:+17681872	None:intergenic
GAGAAGAGGTTACTATGTTG+AGG	0.509668	8.4:-17681129	MS.gene063524:CDS
TGTAAAGATGAATTTGCTGT+TGG	0.511059	8.4:-17680809	MS.gene063524:CDS
TAATTGAGGAAGAAGAAATC+GGG	0.511251	8.4:-17681381	MS.gene063524:CDS
ATCGAAATCGAAGTCGAGAT+CGG	0.514526	8.4:+17681810	None:intergenic
ATGGTGATTGTATTATGCCT+TGG	0.516094	8.4:-17680748	MS.gene063524:CDS
GATTAGGGTTTGATCATCGT+CGG	0.516282	8.4:+17681858	None:intergenic
GCGGAGTATGAGATGATGTT+TGG	0.518188	8.4:-17680959	MS.gene063524:CDS
TGGAAGGCCAATAAGGTAAA+GGG	0.521455	8.4:+17681836	None:intergenic
GTGGAAGGCCAATAAGGTAA+AGG	0.522983	8.4:+17681835	None:intergenic
ATTAGGGTTTGATCATCGTC+GGG	0.526063	8.4:+17681859	None:intergenic
GTTAACATGATGAGGGTTGG+TGG	0.530615	8.4:-17681091	MS.gene063524:CDS
AGTAACAATAGGTCTGTTAG+TGG	0.533405	8.4:-17681214	MS.gene063524:CDS
CCGTGTTCTCATCGATATCA+TGG	0.534029	8.4:-17680767	MS.gene063524:CDS
GTGGTGGTGACGACGGAGAT+AGG	0.542254	8.4:+17681888	None:intergenic
GATGATGTTTGGTCAATTCG+CGG	0.544306	8.4:-17680948	MS.gene063524:CDS
TGGTGGTGGCTTTGATGATA+GGG	0.550462	8.4:-17681278	MS.gene063524:CDS
GTTGAGGGTAGATGGAGAAG+AGG	0.551302	8.4:-17681113	MS.gene063524:CDS
TCAACAAACGCTACAGAAGC+CGG	0.552415	8.4:+17680896	None:intergenic
AACATGATGAGGGTTGGTGG+AGG	0.553873	8.4:-17681088	MS.gene063524:CDS
TGTTGAGAATCTTCCGTCGG+TGG	0.555357	8.4:-17680879	MS.gene063524:CDS
GATGAGGGTTGGTGGAGGGA+CGG	0.555436	8.4:-17681083	MS.gene063524:CDS
ATTGTATTATGCCTTGGTTG+GGG	0.561288	8.4:-17680742	MS.gene063524:CDS
AGAAGAGGTTAACATGATGA+GGG	0.567261	8.4:-17681098	MS.gene063524:CDS
CGAGGAAGAAGATGGAGAAG+AGG	0.574787	8.4:-17681143	MS.gene063524:CDS
CAAAATTCTCGCGAGAAAAG+CGG	0.575996	8.4:+17681743	None:intergenic
AGATAGGTTACATCAGCCAT+TGG	0.576448	8.4:+17681904	None:intergenic
TGAATTTGCTGTTGGAGAAG+AGG	0.578557	8.4:-17680801	MS.gene063524:CDS
ATTGGATGGGAATTCGGGAT+CGG	0.580804	8.4:+17681777	None:intergenic
GAGGTTAACATGATGAGGGT+TGG	0.581773	8.4:-17681094	MS.gene063524:CDS
GGAAAGCCCCAATGTTGGCT+CGG	0.582098	8.4:-17680655	MS.gene063524:CDS
ATGATAAGTTTCAGGACTTG+CGG	0.583376	8.4:+17681030	None:intergenic
GAGATTGATTCGGATTCTGA+TGG	0.594668	8.4:-17681493	MS.gene063524:CDS
CCATGATATCGATGAGAACA+CGG	0.599495	8.4:+17680767	None:intergenic
TAACGATTGATGAATTGGAT+CGG	0.599577	8.4:+17681669	None:intergenic
TCATAATCAGCATCATCAGT+AGG	0.603013	8.4:+17680683	None:intergenic
AAGTCGAGATCGGAAGTGGA+AGG	0.605500	8.4:+17681820	None:intergenic
GGTTGTGACTAAAGAGGACG+TGG	0.612162	8.4:-17680858	MS.gene063524:CDS
GGTGGTTGTTGTGATTGGAT+GGG	0.617275	8.4:+17681764	None:intergenic
AGATCGAGATGAATGTCGGA+AGG	0.622305	8.4:+17681601	None:intergenic
GTCGGTGGTTGTGACTAAAG+AGG	0.623252	8.4:-17680864	MS.gene063524:CDS
GTTCGTGGTGGTGGTGACGA+CGG	0.628066	8.4:+17681881	None:intergenic
AACAATAGGTCTGTTAGTGG+TGG	0.628570	8.4:-17681211	MS.gene063524:CDS
ATTGAGATCGAGATGAATGT+CGG	0.630253	8.4:+17681597	None:intergenic
ACATGATGAGGGTTGGTGGA+GGG	0.638721	8.4:-17681087	MS.gene063524:CDS
TCTTTAGTCACAACCACCGA+CGG	0.649000	8.4:+17680866	None:intergenic
GTTTGTTGAGAATCTTCCGT+CGG	0.653060	8.4:-17680882	MS.gene063524:CDS
ACGTAGGAAAGCCCCAATGT+TGG	0.654719	8.4:-17680660	MS.gene063524:CDS
GATCATCGTCGGGTTCGTGG+TGG	0.657843	8.4:+17681869	None:intergenic
TGAAGCGAATCCCAACGAAG+AGG	0.670151	8.4:+17681352	None:intergenic
ACAAGAAGAAGAAGAACACG+AGG	0.672177	8.4:-17681161	MS.gene063524:CDS
GTTAGTGGTGGTCGTCCTCG+CGG	0.673034	8.4:-17681199	MS.gene063524:CDS
AATTCTCGCGAGAAAAGCGG+TGG	0.679571	8.4:+17681746	None:intergenic
GGATGATCCTCAAATTTACG+AGG	0.692767	8.4:-17681323	MS.gene063524:CDS
GTATTCCTAATCCCCAACCA+AGG	0.713126	8.4:+17680731	None:intergenic
AGTGCTCCGAGCCAACATTG+GGG	0.718946	8.4:+17680649	None:intergenic
ATGATGCTGATTATGAACGT+AGG	0.726355	8.4:-17680676	MS.gene063524:CDS
ACAAACGCTACAGAAGCCGG+TGG	0.728119	8.4:+17680899	None:intergenic
TGATGATTACATTTACACTG+CGG	0.769219	8.4:-17680978	MS.gene063524:CDS
TCAATAAACGAAGTACCGCG+AGG	0.792094	8.4:+17681184	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	TGACTTTAACAATGTAATTG+AGG	-	chr8.4:17681152-17681171	MS.gene063524:CDS	25.0%
!!	ACAGTTTAAGTTTCGATTTA+GGG	-	chr8.4:17680917-17680936	MS.gene063524:CDS	25.0%
!!	TGATGATTTTCCTGATATTA+CGG	-	chr8.4:17680993-17681012	MS.gene063524:CDS	25.0%
	ACGTATTGTTGAGATTGATT+CGG	-	chr8.4:17681044-17681063	MS.gene063524:CDS	30.0%
	ATGACGAAAACAGTAACAAT+AGG	-	chr8.4:17681322-17681341	MS.gene063524:CDS	30.0%
	GAAACTTAAACTGTCGAAAA+CGG	+	chr8.4:17680911-17680930	None:intergenic	30.0%
	GAAATCACATGATAAGTTTC+AGG	+	chr8.4:17681528-17681547	None:intergenic	30.0%
	GTAATTGAGGAAGAAGAAAT+CGG	-	chr8.4:17681165-17681184	MS.gene063524:CDS	30.0%
	TAACGATTGATGAATTGGAT+CGG	+	chr8.4:17680881-17680900	None:intergenic	30.0%
	TAATTGAGGAAGAAGAAATC+GGG	-	chr8.4:17681166-17681185	MS.gene063524:CDS	30.0%
	TCAAAATCCTCGTAAATTTG+AGG	+	chr8.4:17681234-17681253	None:intergenic	30.0%
	TCGTTTAACGATTGATGAAT+TGG	+	chr8.4:17680886-17680905	None:intergenic	30.0%
	TGATGATTACATTTACACTG+CGG	-	chr8.4:17681569-17681588	MS.gene063524:CDS	30.0%
!	AAATTTACGAGGATTTTGAG+TGG	-	chr8.4:17681235-17681254	MS.gene063524:CDS	30.0%
!	GACAGTTTAAGTTTCGATTT+AGG	-	chr8.4:17680916-17680935	MS.gene063524:CDS	30.0%
!	TTTGATGATAGGGAAATTCT+TGG	-	chr8.4:17681279-17681298	MS.gene063524:CDS	30.0%
!!	AATTTACGAGGATTTTGAGT+GGG	-	chr8.4:17681236-17681255	MS.gene063524:CDS	30.0%
!!	GAAGTTGATAGAAATGGAAA+CGG	-	chr8.4:17681081-17681100	MS.gene063524:CDS	30.0%
!!	TGTAAAGATGAATTTGCTGT+TGG	-	chr8.4:17681738-17681757	MS.gene063524:CDS	30.0%
	ACAATACGTAAACCGTCAAT+TGG	+	chr8.4:17681033-17681052	None:intergenic	35.0%
	AGAAGAGGTTAACATGATGA+GGG	-	chr8.4:17681449-17681468	MS.gene063524:CDS	35.0%
	AGAAGAGGTTACTATGTTGA+GGG	-	chr8.4:17681419-17681438	MS.gene063524:CDS	35.0%
	AGTAACAATAGGTCTGTTAG+TGG	-	chr8.4:17681333-17681352	MS.gene063524:CDS	35.0%
	ATGATAAGTTTCAGGACTTG+CGG	+	chr8.4:17681520-17681539	None:intergenic	35.0%
	ATGGTGATTGTATTATGCCT+TGG	-	chr8.4:17681799-17681818	MS.gene063524:CDS	35.0%
	ATTGAGATCGAGATGAATGT+CGG	+	chr8.4:17680953-17680972	None:intergenic	35.0%
	ATTGTATTATGCCTTGGTTG+GGG	-	chr8.4:17681805-17681824	MS.gene063524:CDS	35.0%
	CCAATAAGGTAAAGGGATTA+GGG	+	chr8.4:17680707-17680726	None:intergenic	35.0%
	GATCTAGAAACCGTAATATC+AGG	+	chr8.4:17681006-17681025	None:intergenic	35.0%
	GATTGTATTATGCCTTGGTT+GGG	-	chr8.4:17681804-17681823	MS.gene063524:CDS	35.0%
	TCATAATCAGCATCATCAGT+AGG	+	chr8.4:17681867-17681886	None:intergenic	35.0%
	TCTAGATCTGATCCAATTGA+CGG	-	chr8.4:17681018-17681037	MS.gene063524:CDS	35.0%
	TGATTGTATTATGCCTTGGT+TGG	-	chr8.4:17681803-17681822	MS.gene063524:CDS	35.0%
!	ATGATGCTGATTATGAACGT+AGG	-	chr8.4:17681871-17681890	MS.gene063524:CDS	35.0%
!	ATTCTTGGTTTGATGTTTGC+TGG	-	chr8.4:17681294-17681313	MS.gene063524:CDS	35.0%
!	TGATTTCAGAGCCTGATTTT+GGG	-	chr8.4:17681541-17681560	MS.gene063524:CDS	35.0%
!!	GGTGAAGAAGTTGATAGAAA+TGG	-	chr8.4:17681075-17681094	MS.gene063524:CDS	35.0%
	AACAATAGGTCTGTTAGTGG+TGG	-	chr8.4:17681336-17681355	MS.gene063524:CDS	40.0%
	ACAAGAAGAAGAAGAACACG+AGG	-	chr8.4:17681386-17681405	MS.gene063524:CDS	40.0%
	ATCGAAATCGAAGTCGAGAT+CGG	+	chr8.4:17680740-17680759	None:intergenic	40.0%
	ATTAGGGTTTGATCATCGTC+GGG	+	chr8.4:17680691-17680710	None:intergenic	40.0%
	CAAAATTCTCGCGAGAAAAG+CGG	+	chr8.4:17680807-17680826	None:intergenic	40.0%
	CCATGATATCGATGAGAACA+CGG	+	chr8.4:17681783-17681802	None:intergenic	40.0%
	CCCTAATCCCTTTACCTTAT+TGG	-	chr8.4:17680704-17680723	MS.gene063524:CDS	40.0%
	GAGAAGAGGTTAACATGATG+AGG	-	chr8.4:17681448-17681467	MS.gene063524:CDS	40.0%
	GAGAAGAGGTTACTATGTTG+AGG	-	chr8.4:17681418-17681437	MS.gene063524:CDS	40.0%
	GATGATGTTTGGTCAATTCG+CGG	-	chr8.4:17681599-17681618	MS.gene063524:CDS	40.0%
	GATTAGGGTTTGATCATCGT+CGG	+	chr8.4:17680692-17680711	None:intergenic	40.0%
	GCCAATAAGGTAAAGGGATT+AGG	+	chr8.4:17680708-17680727	None:intergenic	40.0%
	GGATGATCCTCAAATTTACG+AGG	-	chr8.4:17681224-17681243	MS.gene063524:CDS	40.0%
	GTTACTATGTTGAGGGTAGA+TGG	-	chr8.4:17681426-17681445	MS.gene063524:CDS	40.0%
	GTTGTGATTGGATGGGAATT+CGG	+	chr8.4:17680779-17680798	None:intergenic	40.0%
	TCATCATTGTCCCCAAAATC+AGG	+	chr8.4:17681555-17681574	None:intergenic	40.0%
	TGGAAGGCCAATAAGGTAAA+GGG	+	chr8.4:17680714-17680733	None:intergenic	40.0%
	TTGTGATTGGATGGGAATTC+GGG	+	chr8.4:17680778-17680797	None:intergenic	40.0%
!	GATTTCAGAGCCTGATTTTG+GGG	-	chr8.4:17681542-17681561	MS.gene063524:CDS	40.0%
!	GTGATTTCAGAGCCTGATTT+TGG	-	chr8.4:17681540-17681559	MS.gene063524:CDS	40.0%
!	GTTTGTTGAGAATCTTCCGT+CGG	-	chr8.4:17681665-17681684	MS.gene063524:CDS	40.0%
!	TTCTCGCGAGAATTTTGTGA+TGG	-	chr8.4:17680810-17680829	MS.gene063524:CDS	40.0%
!!	GAGATTGATTCGGATTCTGA+TGG	-	chr8.4:17681054-17681073	MS.gene063524:CDS	40.0%
!!	TGAATTTGCTGTTGGAGAAG+AGG	-	chr8.4:17681746-17681765	MS.gene063524:CDS	40.0%
	AAAGCGGTGGTTGTTGTGAT+TGG	+	chr8.4:17680791-17680810	None:intergenic	45.0%
	AGATCGAGATGAATGTCGGA+AGG	+	chr8.4:17680949-17680968	None:intergenic	45.0%
	ATTGGATGGGAATTCGGGAT+CGG	+	chr8.4:17680773-17680792	None:intergenic	45.0%
	CCGTGTTCTCATCGATATCA+TGG	-	chr8.4:17681780-17681799	MS.gene063524:CDS	45.0%
	GAAGAACACGAGGAAGAAGA+TGG	-	chr8.4:17681396-17681415	MS.gene063524:CDS	45.0%
	GAGATTGTTCAACGCGTTGT+TGG	+	chr8.4:17680843-17680862	None:intergenic	45.0%
	GAGGGACGGAAAATCTTGAT+TGG	-	chr8.4:17681478-17681497	MS.gene063524:CDS	45.0%
	GAGGTTAACATGATGAGGGT+TGG	-	chr8.4:17681453-17681472	MS.gene063524:CDS	45.0%
	GCGGAGTATGAGATGATGTT+TGG	-	chr8.4:17681588-17681607	MS.gene063524:CDS	45.0%
	GGTGGTTGTTGTGATTGGAT+GGG	+	chr8.4:17680786-17680805	None:intergenic	45.0%
	GTATTCCTAATCCCCAACCA+AGG	+	chr8.4:17681819-17681838	None:intergenic	45.0%
	GTGGAAGGCCAATAAGGTAA+AGG	+	chr8.4:17680715-17680734	None:intergenic	45.0%
	GTTAACATGATGAGGGTTGG+TGG	-	chr8.4:17681456-17681475	MS.gene063524:CDS	45.0%
	TCAACAAACGCTACAGAAGC+CGG	+	chr8.4:17681654-17681673	None:intergenic	45.0%
	TCTTTAGTCACAACCACCGA+CGG	+	chr8.4:17681684-17681703	None:intergenic	45.0%
	TTATGCCTTGGTTGGGGATT+AGG	-	chr8.4:17681811-17681830	MS.gene063524:CDS	45.0%
	TTCGTTTACCAGTAAGCCAC+CGG	-	chr8.4:17681632-17681651	MS.gene063524:CDS	45.0%
	TTTGAGTGGGAGGAAGTTGA+TGG	-	chr8.4:17681249-17681268	MS.gene063524:CDS	45.0%
!	AACGGAGACAACGTGTTTTG+TGG	-	chr8.4:17681099-17681118	MS.gene063524:CDS	45.0%
!!	ATGGTGGTGGCTTTGATGAT+AGG	-	chr8.4:17681268-17681287	MS.gene063524:CDS	45.0%
!!	TCAATAAACGAAGTACCGCG+AGG	+	chr8.4:17681366-17681385	None:intergenic	45.0%
!!	TGGTGGTGGCTTTGATGATA+GGG	-	chr8.4:17681269-17681288	MS.gene063524:CDS	45.0%
!!	TTACGAGGATTTTGAGTGGG+AGG	-	chr8.4:17681239-17681258	MS.gene063524:CDS	45.0%
	AAGTCGAGATCGGAAGTGGA+AGG	+	chr8.4:17680730-17680749	None:intergenic	50.0%
	AAGTGCTCCGAGCCAACATT+GGG	+	chr8.4:17681902-17681921	None:intergenic	50.0%
	AATTCTCGCGAGAAAAGCGG+TGG	+	chr8.4:17680804-17680823	None:intergenic	50.0%
	ACGTAGGAAAGCCCCAATGT+TGG	-	chr8.4:17681887-17681906	MS.gene063524:CDS	50.0%
	ATCGAAGTCGAGATCGGAAG+TGG	+	chr8.4:17680734-17680753	None:intergenic	50.0%
	CGAGGAAGAAGATGGAGAAG+AGG	-	chr8.4:17681404-17681423	MS.gene063524:CDS	50.0%
	CGGTGGTTGTTGTGATTGGA+TGG	+	chr8.4:17680787-17680806	None:intergenic	50.0%
	GGAAACTCACAGCGACAAAC+AGG	+	chr8.4:17681846-17681865	None:intergenic	50.0%
	GGTTGTGACTAAAGAGGACG+TGG	-	chr8.4:17681689-17681708	MS.gene063524:CDS	50.0%
	GTCGGTGGTTGTGACTAAAG+AGG	-	chr8.4:17681683-17681702	MS.gene063524:CDS	50.0%
	GTTGAGGGTAGATGGAGAAG+AGG	-	chr8.4:17681434-17681453	MS.gene063524:CDS	50.0%
	TCGGAAGTGGAAGGCCAATA+AGG	+	chr8.4:17680721-17680740	None:intergenic	50.0%
	TCGTTGGGATTCGCTTCAGT+TGG	-	chr8.4:17681200-17681219	MS.gene063524:CDS	50.0%
	TGAAGCGAATCCCAACGAAG+AGG	+	chr8.4:17681198-17681217	None:intergenic	50.0%
	TGTTGAGAATCTTCCGTCGG+TGG	-	chr8.4:17681668-17681687	MS.gene063524:CDS	50.0%
	TTGGGATTCGCTTCAGTTGG+AGG	-	chr8.4:17681203-17681222	MS.gene063524:CDS	50.0%
	TTTGATCATCGTCGGGTTCG+TGG	+	chr8.4:17680684-17680703	None:intergenic	50.0%
!	CGGGAGTTTTCCTCTTCGTT+GGG	-	chr8.4:17681185-17681204	MS.gene063524:CDS	50.0%
!	TCGGGAGTTTTCCTCTTCGT+TGG	-	chr8.4:17681184-17681203	MS.gene063524:CDS	50.0%
!!	AACATGATGAGGGTTGGTGG+AGG	-	chr8.4:17681459-17681478	MS.gene063524:CDS	50.0%
!!	ACATGATGAGGGTTGGTGGA+GGG	-	chr8.4:17681460-17681479	MS.gene063524:CDS	50.0%
	ACAAACGCTACAGAAGCCGG+TGG	+	chr8.4:17681651-17681670	None:intergenic	55.0%
	AGTGCTCCGAGCCAACATTG+GGG	+	chr8.4:17681901-17681920	None:intergenic	55.0%
	CAAGTGCTCCGAGCCAACAT+TGG	+	chr8.4:17681903-17681922	None:intergenic	55.0%
	TACAGAAGCCGGTGGCTTAC+TGG	+	chr8.4:17681643-17681662	None:intergenic	55.0%
!	GGAAAGCCCCAATGTTGGCT+CGG	-	chr8.4:17681892-17681911	MS.gene063524:CDS	55.0%
!!	GAGTGGGAGGAAGTTGATGG+TGG	-	chr8.4:17681252-17681271	MS.gene063524:CDS	55.0%
!!	TGGGAGGAAGTTGATGGTGG+TGG	-	chr8.4:17681255-17681274	MS.gene063524:CDS	55.0%
	GATCATCGTCGGGTTCGTGG+TGG	+	chr8.4:17680681-17680700	None:intergenic	60.0%
	GTTAGTGGTGGTCGTCCTCG+CGG	-	chr8.4:17681348-17681367	MS.gene063524:CDS	60.0%
!	GTGGTGGTGACGACGGAGAT+AGG	+	chr8.4:17680662-17680681	None:intergenic	60.0%
!!	GATGAGGGTTGGTGGAGGGA+CGG	-	chr8.4:17681464-17681483	MS.gene063524:CDS	60.0%
!!	GTTCGTGGTGGTGGTGACGA+CGG	+	chr8.4:17680669-17680688	None:intergenic	60.0%
	CATCGTCGGGTTCGTGGTGG+TGG	+	chr8.4:17680678-17680697	None:intergenic	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	17680646	17681923	17680646	ID=MS.gene063524
chr8.4	mRNA	17680646	17681923	17680646	ID=MS.gene063524.t1;Parent=MS.gene063524
chr8.4	exon	17680646	17681923	17680646	ID=MS.gene063524.t1.exon1;Parent=MS.gene063524.t1
chr8.4	CDS	17680646	17681923	17680646	ID=cds.MS.gene063524.t1;Parent=MS.gene063524.t1

Gene Sequence

>MS.gene063524

ATGGCTGATGTAACCTATCTCCGTCGTCACCACCACCACGAACCCGACGATGATCAAACCCTAATCCCTTTACCTTATTGGCCTTCCACTTCCGATCTCGACTTCGATTTCGATCTCTACTCTTCCGATCCCGAATTCCCATCCAATCACAACAACCACCGCTTTTCTCGCGAGAATTTTGTGATGGATCTTTTCCAACAACGCGTTGAACAATCTCAAATTACTAATCACACCGATCCAATTCATCAATCGTTAAACGACTCCGTTTTCGACAGTTTAAGTTTCGATTTAGGGTTCAATCCTTCCGACATTCATCTCGATCTCAATATCGCTGCTGAAGAAGATGATGATGATTTTCCTGATATTACGGTTTCTAGATCTGATCCAATTGACGGTTTACGTATTGTTGAGATTGATTCGGATTCTGATGGTGAAGAAGTTGATAGAAATGGAAACGGAGACAACGTGTTTTGTGGAATCTGTATGCATTCTGATGCTGATGAAGATGACTTTAACAATGTAATTGAGGAAGAAGAAATCGGGAGTTTTCCTCTTCGTTGGGATTCGCTTCAGTTGGAGGATGATCCTCAAATTTACGAGGATTTTGAGTGGGAGGAAGTTGATGGTGGTGGCTTTGATGATAGGGAAATTCTTGGTTTGATGTTTGCTGGTGATGATGACGAAAACAGTAACAATAGGTCTGTTAGTGGTGGTCGTCCTCGCGGTACTTCGTTTATTGAACAAGAAGAAGAAGAACACGAGGAAGAAGATGGAGAAGAGGTTACTATGTTGAGGGTAGATGGAGAAGAGGTTAACATGATGAGGGTTGGTGGAGGGACGGAAAATCTTGATTGGCAAGTTTTGTTGAATTCCGCAAGTCCTGAAACTTATCATGTGATTTCAGAGCCTGATTTTGGGGACAATGATGATTACATTTACACTGCGGAGTATGAGATGATGTTTGGTCAATTCGCGGATAATGTGAATTCGTTTACCAGTAAGCCACCGGCTTCTGTAGCGTTTGTTGAGAATCTTCCGTCGGTGGTTGTGACTAAAGAGGACGTGGATAACAACAATGCGTTGTGTGCAGTTTGTAAAGATGAATTTGCTGTTGGAGAAGAGGTGAAGTTGTTGCCGTGTTCTCATCGATATCATGGTGATTGTATTATGCCTTGGTTGGGGATTAGGAATACTTGTCCTGTTTGTCGCTGTGAGTTTCCTACTGATGATGCTGATTATGAACGTAGGAAAGCCCCAATGTTGGCTCGGAGCACTTGA

Protein sequence

>MS.gene063524.t1

MADVTYLRRHHHHEPDDDQTLIPLPYWPSTSDLDFDFDLYSSDPEFPSNHNNHRFSRENFVMDLFQQRVEQSQITNHTDPIHQSLNDSVFDSLSFDLGFNPSDIHLDLNIAAEEDDDDFPDITVSRSDPIDGLRIVEIDSDSDGEEVDRNGNGDNVFCGICMHSDADEDDFNNVIEEEEIGSFPLRWDSLQLEDDPQIYEDFEWEEVDGGGFDDREILGLMFAGDDDENSNNRSVSGGRPRGTSFIEQEEEEHEEEDGEEVTMLRVDGEEVNMMRVGGGTENLDWQVLLNSASPETYHVISEPDFGDNDDYIYTAEYEMMFGQFADNVNSFTSKPPASVAFVENLPSVVVTKEDVDNNNALCAVCKDEFAVGEEVKLLPCSHRYHGDCIMPWLGIRNTCPVCRCEFPTDDADYERRKAPMLARST