AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene065073

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065073.t1 MTR_1g111830 97.959 245 4 1 1 245 1 244 0.0 496
MS.gene065073.t1 MTR_3g462790 44.578 249 108 8 23 245 41 285 5.25e-59 189
MS.gene065073.t1 MTR_5g069710 50.282 177 79 2 23 193 27 200 9.87e-56 181
MS.gene065073.t1 MTR_7g067080 49.206 189 79 4 23 200 33 215 1.08e-54 178
MS.gene065073.t1 MTR_5g081860 49.189 185 80 4 23 200 25 202 1.19e-54 177
MS.gene065073.t1 MTR_4g111975 46.500 200 77 3 25 194 8 207 7.76e-54 176
MS.gene065073.t1 MTR_8g063600 51.892 185 73 3 23 200 8 183 1.51e-53 174
MS.gene065073.t1 MTR_8g063870 45.556 180 80 2 23 200 6 169 1.35e-45 154
MS.gene065073.t1 MTR_4g100630 52.800 125 43 2 94 202 49 173 1.21e-35 129
MS.gene065073.t1 MTR_2g100930 62.222 90 33 1 120 208 104 193 6.13e-33 122
MS.gene065073.t1 MTR_5g075760 40.526 190 97 8 24 209 12 189 1.06e-32 119
MS.gene065073.t1 MTR_5g075790 40.415 193 92 8 24 209 21 197 1.63e-31 115
MS.gene065073.t1 MTR_8g101650 62.069 87 32 1 103 189 83 168 2.27e-30 114
MS.gene065073.t1 MTR_6g092540 71.429 70 20 0 120 189 92 161 2.68e-30 114
MS.gene065073.t1 MTR_5g037080 68.421 76 24 0 116 191 93 168 5.06e-27 106
MS.gene065073.t1 MTR_4g107230 65.169 89 29 2 118 206 77 163 4.62e-26 103
MS.gene065073.t1 MTR_1g033600 42.308 130 65 2 23 142 10 139 4.35e-25 96.7
MS.gene065073.t1 MTR_1g033620 75.000 60 15 0 141 200 21 80 1.75e-24 98.2
MS.gene065073.t1 MTR_0036s0260 64.179 67 24 0 125 191 28 94 2.46e-24 96.7
MS.gene065073.t1 MTR_5g088010 40.000 155 70 6 73 210 11 159 3.57e-24 97.4
MS.gene065073.t1 MTR_5g027570 41.304 138 68 5 86 219 56 184 5.19e-24 96.7
MS.gene065073.t1 MTR_2g090305 65.672 67 23 0 125 191 28 94 1.80e-23 94.0
MS.gene065073.t1 MTR_3g104370 64.789 71 22 2 122 189 88 158 2.54e-23 94.7
MS.gene065073.t1 MTR_5g088060 65.672 67 20 1 127 190 274 340 2.04e-22 95.5
MS.gene065073.t1 MTR_5g488160 65.672 67 20 1 127 190 274 340 2.04e-22 95.5
MS.gene065073.t1 MTR_4g015130 56.338 71 28 1 135 202 3 73 6.20e-22 86.7
MS.gene065073.t1 MTR_5g027550 48.387 93 44 2 115 203 67 159 3.89e-18 80.9
MS.gene065073.t1 MTR_1g048660 51.562 64 31 0 126 189 13 76 2.98e-17 74.7
MS.gene065073.t1 MTR_1g022290 42.254 71 41 0 25 95 7 77 5.73e-16 71.2
MS.gene065073.t1 MTR_8g051670 85.417 48 7 0 1 48 1 48 8.17e-16 69.7
MS.gene065073.t1 MTR_3g116720 47.619 63 33 0 25 87 16 78 1.42e-15 70.1
MS.gene065073.t1 MTR_3g111880 41.667 72 42 0 23 94 5 76 3.66e-15 69.3
MS.gene065073.t1 MTR_5g020170 44.928 69 38 0 19 87 13 81 1.29e-14 67.8
MS.gene065073.t1 MTR_1g083180 52.055 73 31 2 127 196 63 134 6.90e-14 68.2
MS.gene065073.t1 MTR_6g004250 43.284 67 38 0 23 89 8 74 7.31e-14 65.5
MS.gene065073.t1 MTR_3g070110 34.014 147 73 5 68 193 27 170 2.62e-13 67.4
MS.gene065073.t1 MTR_7g089210 50.000 58 29 0 30 87 17 74 3.91e-13 63.5
MS.gene065073.t1 MTR_3g013440 40.909 66 38 1 25 89 10 75 4.44e-12 60.8
MS.gene065073.t1 MTR_3g111920 33.333 90 52 2 25 114 3 84 3.24e-11 58.5
MS.gene065073.t1 MTR_8g077360 40.000 65 38 1 23 87 3 66 4.61e-11 57.8
MS.gene065073.t1 MTR_8g077380 40.000 65 38 1 23 87 3 66 5.52e-11 57.4
MS.gene065073.t1 MTR_8g077390 40.000 65 38 1 23 87 3 66 5.52e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene065073.t1 AT5G04760 58.296 223 82 4 23 245 4 215 2.43e-80 240
MS.gene065073.t1 AT5G08520 54.545 187 69 3 25 200 12 193 2.04e-60 192
MS.gene065073.t1 AT3G11280 51.497 167 75 2 25 191 33 193 2.47e-55 178
MS.gene065073.t1 AT3G11280 51.497 167 75 2 25 191 33 193 2.47e-55 178
MS.gene065073.t1 AT2G38090 40.000 260 130 6 6 243 7 262 8.95e-55 178
MS.gene065073.t1 AT5G58900 47.778 180 79 2 25 193 34 209 2.52e-53 174
MS.gene065073.t1 AT5G05790 46.591 176 88 2 21 193 27 199 5.01e-53 173
MS.gene065073.t1 AT5G05790 46.591 176 88 2 21 193 27 199 5.01e-53 173
MS.gene065073.t1 AT1G49010 45.175 228 87 7 25 226 8 223 6.11e-53 174
MS.gene065073.t1 AT5G01200 40.376 213 103 5 1 193 6 214 2.58e-45 152
MS.gene065073.t1 AT5G23650 40.359 223 111 3 23 229 11 227 3.95e-45 154
MS.gene065073.t1 AT3G10580 44.550 211 93 6 25 234 8 195 1.74e-43 147
MS.gene065073.t1 AT3G10580 44.550 211 93 6 25 234 8 195 3.60e-43 148
MS.gene065073.t1 AT4G09450 49.102 167 69 3 24 190 6 156 5.37e-42 142
MS.gene065073.t1 AT5G47390 66.265 83 26 1 120 202 91 171 5.58e-32 120
MS.gene065073.t1 AT5G61620 51.724 116 54 1 80 193 61 176 4.45e-29 112
MS.gene065073.t1 AT5G56840 65.432 81 24 2 120 196 86 166 8.68e-29 108
MS.gene065073.t1 AT1G70000 73.333 75 20 0 116 190 89 163 1.19e-28 109
MS.gene065073.t1 AT1G70000 73.333 75 20 0 116 190 89 163 1.19e-28 109
MS.gene065073.t1 AT3G16350 50.000 122 52 3 110 229 125 239 2.04e-25 103
MS.gene065073.t1 AT3G10590 38.021 192 106 7 24 208 6 191 6.27e-25 98.2
MS.gene065073.t1 AT1G19000 50.847 118 51 2 74 191 58 168 8.41e-24 97.1
MS.gene065073.t1 AT1G19000 50.847 118 51 2 74 191 58 168 8.41e-24 97.1
MS.gene065073.t1 AT3G10585 38.323 167 67 4 25 190 7 138 1.57e-23 93.6
MS.gene065073.t1 AT1G74840 65.333 75 26 0 117 191 88 162 7.21e-23 93.6
MS.gene065073.t1 AT1G74840 65.333 75 26 0 117 191 88 162 1.05e-22 94.0
MS.gene065073.t1 AT3G10595 31.792 173 85 6 25 195 6 147 1.91e-18 80.5
MS.gene065073.t1 AT1G75250 42.667 75 41 1 13 87 2 74 1.25e-16 73.2
MS.gene065073.t1 AT1G75250 42.667 75 41 1 13 87 2 74 2.11e-16 73.6
MS.gene065073.t1 AT4G39250 39.474 76 46 0 25 100 14 89 1.94e-15 70.1
MS.gene065073.t1 AT2G18328 50.000 60 30 0 30 89 16 75 3.51e-13 63.5
MS.gene065073.t1 AT2G21650 41.096 73 43 0 25 97 14 86 3.53e-12 61.6
MS.gene065073.t1 AT1G19510 44.068 59 33 0 29 87 16 74 4.73e-12 61.2
MS.gene065073.t1 AT4G36570 59.091 44 18 0 25 68 12 55 3.67e-11 57.4

Find 85 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTATTGGGCTGACCAAATT+TGG 0.115459 1.2:+82801730 MS.gene065073:CDS
CCAATCTCCTTTCCCAAATT+TGG 0.134856 1.2:-82801743 None:intergenic
CTGTGCAGGCTGTTTCTTAT+TGG 0.143950 1.2:+82801715 MS.gene065073:intron
GTAAGTCTGCGACGGAAATT+AGG 0.198649 1.2:+82800663 MS.gene065073:CDS
TCTCTTTCTTCACCGAATTC+TGG 0.216560 1.2:-82801843 None:intergenic
GCATATGGGTATTCAAATTA+TGG 0.241889 1.2:+82802027 MS.gene065073:CDS
CTGTGCCTATTGATCAGAAC+TGG 0.289180 1.2:+82801917 MS.gene065073:CDS
TGTGCAGGCTGTTTCTTATT+GGG 0.291908 1.2:+82801716 MS.gene065073:intron
CCAAATTTGGGAAAGGAGAT+TGG 0.329445 1.2:+82801743 MS.gene065073:CDS
CCGCGTCGTGGCGGCGGTGG+TGG 0.329644 1.2:-82800522 None:intergenic
TGATATACTGGAAATTGATT+CGG 0.359965 1.2:+82800709 MS.gene065073:CDS
TGGTGGTGGATTGGCTGAAT+GGG 0.366393 1.2:+82800775 MS.gene065073:CDS
AGCTTTGGTTCATGATATAC+TGG 0.372414 1.2:+82800697 MS.gene065073:CDS
CAGGATCAAATGAGTGCATA+TGG 0.389179 1.2:+82802012 MS.gene065073:CDS
GATGGTGCCGGAGGATTTAC+CGG 0.392546 1.2:+82800607 MS.gene065073:CDS
TAGGGATCACTATGAAGCTT+TGG 0.393734 1.2:+82800682 MS.gene065073:CDS
GTGGTGGTGGATTGGCTGAA+TGG 0.393857 1.2:+82800774 MS.gene065073:CDS
CGGCCACCGCGTCGTGGCGG+CGG 0.396563 1.2:-82800528 None:intergenic
TTATTGGGCTGACCAAATTT+GGG 0.397453 1.2:+82801731 MS.gene065073:CDS
TCTTCGAATCAAATTTCGTT+TGG 0.406289 1.2:+82800800 MS.gene065073:CDS
AATTGATTCGGGTCGGGTTG+AGG 0.410540 1.2:+82800721 MS.gene065073:CDS
GTACTTTCTTCGCCAGAATT+CGG 0.412820 1.2:+82801831 MS.gene065073:CDS
CAGAACTGGGTTCCTCCTCC+TGG 0.418709 1.2:+82801931 MS.gene065073:CDS
CCACCGCGTCGTGGCGGCGG+TGG 0.422019 1.2:-82800525 None:intergenic
GATATACTGGAAATTGATTC+GGG 0.424201 1.2:+82800710 MS.gene065073:CDS
GGAACCCAGTTCTGATCAAT+AGG 0.426296 1.2:-82801922 None:intergenic
GTTCGAGCGAGCTCTGTTGA+TGG 0.427794 1.2:+82800589 MS.gene065073:CDS
TAAGTCTGCGACGGAAATTA+GGG 0.429071 1.2:+82800664 MS.gene065073:CDS
CTGTGTTCTTCTTCAGTCCA+TGG 0.441575 1.2:-82800869 None:intergenic
TTATCCGTCAAACGATTTGC+AGG 0.442120 1.2:+82801993 MS.gene065073:CDS
TGATCCTGCAAATCGTTTGA+CGG 0.446093 1.2:-82801997 None:intergenic
ATTTCCGTCGCAGACTTACC+TGG 0.452535 1.2:-82800659 None:intergenic
TGGGTTCCTCCTCCTGGTGG+TGG 0.475189 1.2:+82801937 MS.gene065073:CDS
AAGATCGCGGAACAAGTTCC+AGG 0.479111 1.2:+82800641 MS.gene065073:CDS
AAACGACAAAATAGATGTAT+CGG 0.481957 1.2:+82800480 None:intergenic
GCCGAGTTATTCTGATGAAT+CGG 0.482612 1.2:+82800745 MS.gene065073:CDS
GAATCGGCTGTGAGTGGTGG+TGG 0.484996 1.2:+82800761 MS.gene065073:CDS
ACTGGAAATTGATTCGGGTC+GGG 0.496104 1.2:+82800715 MS.gene065073:CDS
GAGATTGGAGAAGCATTTCA+AGG 0.497665 1.2:+82801758 MS.gene065073:CDS
GCGATCTTCTCCCACCGGTC+CGG 0.507834 1.2:-82800626 None:intergenic
GGCTGTGAGTGGTGGTGGAT+TGG 0.511900 1.2:+82800766 MS.gene065073:CDS
TACTGGAAATTGATTCGGGT+CGG 0.512665 1.2:+82800714 MS.gene065073:CDS
CACCGGTCCGGTAAATCCTC+CGG 0.521987 1.2:-82800614 None:intergenic
CCACCACCGCCGCCACGACG+CGG 0.524799 1.2:+82800522 MS.gene065073:CDS
GCGAGCTCTGTTGATGGTGC+CGG 0.528587 1.2:+82800595 MS.gene065073:CDS
GTATCGGGAGTCAGTTGCTA+TGG 0.535551 1.2:+82800496 MS.gene065073:CDS
TGTTGCATTGAACCACCACC+AGG 0.537371 1.2:-82801949 None:intergenic
AACGACAAAATAGATGTATC+GGG 0.540302 1.2:+82800481 None:intergenic
GTCCACTGAGTTGGTTGAGT+CGG 0.541227 1.2:-82800548 None:intergenic
TCGTTATCACCGCCATGTCT+CGG 0.543106 1.2:-82800830 None:intergenic
GGTGATAACGAGAGGAAGAA+AGG 0.548667 1.2:+82800842 MS.gene065073:CDS
CGGAGGATTTACCGGACCGG+TGG 0.556040 1.2:+82800615 MS.gene065073:CDS
TTTGGTTCGAAGCCGAGACA+TGG 0.569715 1.2:+82800818 MS.gene065073:CDS
GTTCCGCGATCTTCTCCCAC+CGG 0.572597 1.2:-82800631 None:intergenic
AACTGGGTTCCTCCTCCTGG+TGG 0.574702 1.2:+82801934 MS.gene065073:CDS
GGGCTGACCAAATTTGGGAA+AGG 0.576808 1.2:+82801736 MS.gene065073:CDS
CTCGCTCGAACAGCTTGTCA+TGG 0.578069 1.2:-82800577 None:intergenic
CAGTTCTGATCAATAGGCAC+AGG 0.581958 1.2:-82801916 None:intergenic
GCATGGCTAGCCACCTGAGT+TGG 0.585938 1.2:-82801802 None:intergenic
TGCCGGAGGATTTACCGGAC+CGG 0.588914 1.2:+82800612 MS.gene065073:CDS
TGGTCTCGAGTCCACTGAGT+TGG 0.594247 1.2:-82800557 None:intergenic
TGTGACAAGAACACCAACTC+AGG 0.595788 1.2:+82801789 MS.gene065073:CDS
AGCTCTGTTGATGGTGCCGG+AGG 0.598113 1.2:+82800598 MS.gene065073:CDS
AGTCGGCCACCGCGTCGTGG+CGG 0.599166 1.2:-82800531 None:intergenic
AGGATCAAATGAGTGCATAT+GGG 0.599865 1.2:+82802013 MS.gene065073:CDS
AGAGGAAGAAAGGAACTCCA+TGG 0.603418 1.2:+82800852 MS.gene065073:CDS
AGAATTCGGTGAAGAAAGAG+AGG 0.605688 1.2:+82801845 MS.gene065073:CDS
TGTGCCTATTGATCAGAACT+GGG 0.607519 1.2:+82801918 MS.gene065073:CDS
TTGAGTCGGCCACCGCGTCG+TGG 0.614569 1.2:-82800534 None:intergenic
CCACCGCCGCCACGACGCGG+TGG 0.616473 1.2:+82800525 MS.gene065073:CDS
ATTGAACCACCACCAGGAGG+AGG 0.621879 1.2:-82801943 None:intergenic
TCTGATGAATCGGCTGTGAG+TGG 0.640798 1.2:+82800755 MS.gene065073:CDS
GGCCGACTCAACCAACTCAG+TGG 0.643487 1.2:+82800546 MS.gene065073:CDS
TATTCATGACATTACATCGG+TGG 0.643904 1.2:+82801879 MS.gene065073:CDS
GGAGGATTTACCGGACCGGT+GGG 0.645323 1.2:+82800616 MS.gene065073:CDS
GACATGGCGGTGATAACGAG+AGG 0.648245 1.2:+82800834 MS.gene065073:CDS
GATGAATCGGCTGTGAGTGG+TGG 0.651355 1.2:+82800758 MS.gene065073:CDS
AGTTCCAGGTAAGTCTGCGA+CGG 0.655266 1.2:+82800655 MS.gene065073:CDS
GGACCGGTGGGAGAAGATCG+CGG 0.663194 1.2:+82800628 MS.gene065073:CDS
GACAAGAACACCAACTCAGG+TGG 0.663453 1.2:+82801792 MS.gene065073:CDS
GCCGATTCATCAGAATAACT+CGG 0.668580 1.2:-82800746 None:intergenic
AAGTATTCATGACATTACAT+CGG 0.675179 1.2:+82801876 MS.gene065073:CDS
TGCATTGAACCACCACCAGG+AGG 0.701355 1.2:-82801946 None:intergenic
CATGGACTGAAGAAGAACAC+AGG 0.714829 1.2:+82800870 MS.gene065073:CDS
GGTTCGAAGCCGAGACATGG+CGG 0.716484 1.2:+82800821 MS.gene065073:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAAAAAAAAAAA+CGG + chr1.2:82801297-82801316 MS.gene065073:intron 0.0%
!!! TTAGTTTTTTTTTTTTTTCT+GGG + chr1.2:82800930-82800949 MS.gene065073:intron 10.0%
!!! TTTAATTTTAATCTTTTTTG+GGG + chr1.2:82801055-82801074 MS.gene065073:intron 10.0%
!!! TTTAGTTTTTTTTTTTTTTC+TGG + chr1.2:82800929-82800948 MS.gene065073:intron 10.0%
!! AAAAGTTATGTTAAAGATAA+AGG - chr1.2:82800995-82801014 None:intergenic 15.0%
!!! TTAATTTTAATCTTTTTTGG+GGG + chr1.2:82801056-82801075 MS.gene065073:intron 15.0%
!!! TTATCTTTAACATAACTTTT+TGG + chr1.2:82800995-82801014 MS.gene065073:intron 15.0%
!! TACAAAATGTAGTTAAATAG+AGG + chr1.2:82801629-82801648 MS.gene065073:intron 20.0%
!!! GTTTATTGGTTTTGATTTTA+GGG + chr1.2:82800952-82800971 MS.gene065073:intron 20.0%
!!! TAATTTTAATCTTTTTTGGG+GGG + chr1.2:82801057-82801076 MS.gene065073:intron 20.0%
!!! TTAACATAACTTTTTGGAAT+TGG + chr1.2:82801001-82801020 MS.gene065073:intron 20.0%
!!! TTTTTTTTTTCTGGGTTTAT+TGG + chr1.2:82800938-82800957 MS.gene065073:intron 20.0%
! AAGTATTCATGACATTACAT+CGG + chr1.2:82801876-82801895 MS.gene065073:CDS 25.0%
! AGAATTTGAACAAATCACTT+TGG + chr1.2:82801586-82801605 MS.gene065073:intron 25.0%
! ATTCCCATTCCTTAAAATTA+TGG - chr1.2:82801030-82801049 None:intergenic 25.0%
! CTAGCAATAATTTAACATAG+AGG + chr1.2:82801663-82801682 MS.gene065073:intron 25.0%
! TAAACAATGATGTCAAATAG+CGG + chr1.2:82801334-82801353 MS.gene065073:intron 25.0%
! TGATATACTGGAAATTGATT+CGG + chr1.2:82800709-82800728 MS.gene065073:CDS 25.0%
!! AATTGGATGCCATAATTTTA+AGG + chr1.2:82801018-82801037 MS.gene065073:intron 25.0%
!!! ATGCCATAATTTTAAGGAAT+GGG + chr1.2:82801024-82801043 MS.gene065073:intron 25.0%
!!! GGTTTATTGGTTTTGATTTT+AGG + chr1.2:82800951-82800970 MS.gene065073:intron 25.0%
ACTATAGCAGTTTAACATAG+CGG + chr1.2:82801491-82801510 MS.gene065073:intron 30.0%
AGATAACATAAAATAGTGGC+GGG - chr1.2:82801697-82801716 None:intergenic 30.0%
ATGTTAAACTGCTATAGTGT+CGG - chr1.2:82801489-82801508 None:intergenic 30.0%
CAGATAACATAAAATAGTGG+CGG - chr1.2:82801698-82801717 None:intergenic 30.0%
GCACAGATAACATAAAATAG+TGG - chr1.2:82801701-82801720 None:intergenic 30.0%
GCATATGGGTATTCAAATTA+TGG + chr1.2:82802027-82802046 MS.gene065073:CDS 30.0%
TACAAAATGTCCTTGAATAG+AGG + chr1.2:82801458-82801477 MS.gene065073:intron 30.0%
TATTACCGATCAAAAGTGAT+AGG - chr1.2:82801428-82801447 None:intergenic 30.0%
TCTTCGAATCAAATTTCGTT+TGG + chr1.2:82800800-82800819 MS.gene065073:CDS 30.0%
! CCTTGTTTAACATAAAACAG+CGG - chr1.2:82801529-82801548 None:intergenic 30.0%
! CTATTTTATGTTATCTGTGC+AGG + chr1.2:82801701-82801720 MS.gene065073:intron 30.0%
! GATATACTGGAAATTGATTC+GGG + chr1.2:82800710-82800729 MS.gene065073:CDS 30.0%
!! AGGTTCTAAAAAGTGTATTG+CGG - chr1.2:82801408-82801427 None:intergenic 30.0%
!! GATGCCATAATTTTAAGGAA+TGG + chr1.2:82801023-82801042 MS.gene065073:intron 30.0%
!! TAGAACCTATCACTTTTGAT+CGG + chr1.2:82801420-82801439 MS.gene065073:intron 30.0%
AGGATCAAATGAGTGCATAT+GGG + chr1.2:82802013-82802032 MS.gene065073:CDS 35.0%
GAGCAAACCACAAAATTTGA+GGG - chr1.2:82801272-82801291 None:intergenic 35.0%
GTTTAACATAAAACAGCGGT+GGG - chr1.2:82801525-82801544 None:intergenic 35.0%
TATTCATGACATTACATCGG+TGG + chr1.2:82801879-82801898 MS.gene065073:CDS 35.0%
TGAGCAAACCACAAAATTTG+AGG - chr1.2:82801273-82801292 None:intergenic 35.0%
TGTTTAACATAAAACAGCGG+TGG - chr1.2:82801526-82801545 None:intergenic 35.0%
TTATTGGGCTGACCAAATTT+GGG + chr1.2:82801731-82801750 MS.gene065073:CDS 35.0%
! AGCTTTGGTTCATGATATAC+TGG + chr1.2:82800697-82800716 MS.gene065073:CDS 35.0%
! GTCTAAACCCTCAAATTTTG+TGG + chr1.2:82801262-82801281 MS.gene065073:intron 35.0%
!! CCGCTGTTTTATGTTAAACA+AGG + chr1.2:82801526-82801545 MS.gene065073:intron 35.0%
!!! GAAGAAAGTACTTTTGAGCA+TGG - chr1.2:82801822-82801841 None:intergenic 35.0%
CAGGATCAAATGAGTGCATA+TGG + chr1.2:82802012-82802031 MS.gene065073:CDS 40.0%
CCAAATTTGGGAAAGGAGAT+TGG + chr1.2:82801743-82801762 MS.gene065073:CDS 40.0%
CCAATCTCCTTTCCCAAATT+TGG - chr1.2:82801746-82801765 None:intergenic 40.0%
CTTATTGGGCTGACCAAATT+TGG + chr1.2:82801730-82801749 MS.gene065073:CDS 40.0%
GCCGAGTTATTCTGATGAAT+CGG + chr1.2:82800745-82800764 MS.gene065073:CDS 40.0%
GTACTTTCTTCGCCAGAATT+CGG + chr1.2:82801831-82801850 MS.gene065073:CDS 40.0%
TAAGTCTGCGACGGAAATTA+GGG + chr1.2:82800664-82800683 MS.gene065073:CDS 40.0%
TAGGGATCACTATGAAGCTT+TGG + chr1.2:82800682-82800701 MS.gene065073:CDS 40.0%
TCTCTTTCTTCACCGAATTC+TGG - chr1.2:82801846-82801865 None:intergenic 40.0%
TGATCCTGCAAATCGTTTGA+CGG - chr1.2:82802000-82802019 None:intergenic 40.0%
TGTGCCTATTGATCAGAACT+GGG + chr1.2:82801918-82801937 MS.gene065073:CDS 40.0%
TGTTAAACAAGGACGTCAAG+TGG + chr1.2:82801537-82801556 MS.gene065073:intron 40.0%
TTATCCGTCAAACGATTTGC+AGG + chr1.2:82801993-82802012 MS.gene065073:CDS 40.0%
! AGAATTCGGTGAAGAAAGAG+AGG + chr1.2:82801845-82801864 MS.gene065073:CDS 40.0%
! GCCGATTCATCAGAATAACT+CGG - chr1.2:82800749-82800768 None:intergenic 40.0%
!! GAGATTGGAGAAGCATTTCA+AGG + chr1.2:82801758-82801777 MS.gene065073:CDS 40.0%
!! TACTGGAAATTGATTCGGGT+CGG + chr1.2:82800714-82800733 MS.gene065073:CDS 40.0%
!! TGTGCAGGCTGTTTCTTATT+GGG + chr1.2:82801716-82801735 MS.gene065073:intron 40.0%
!!! AATCTTTTTTGGGGGGTTTC+TGG + chr1.2:82801064-82801083 MS.gene065073:intron 40.0%
!!! ATCTTTTTTGGGGGGTTTCT+GGG + chr1.2:82801065-82801084 MS.gene065073:intron 40.0%
AGAGGAAGAAAGGAACTCCA+TGG + chr1.2:82800852-82800871 MS.gene065073:CDS 45.0%
ATGTCAAATAGCGGTTGCAG+TGG + chr1.2:82801343-82801362 MS.gene065073:intron 45.0%
CTGTGCCTATTGATCAGAAC+TGG + chr1.2:82801917-82801936 MS.gene065073:CDS 45.0%
CTGTGTTCTTCTTCAGTCCA+TGG - chr1.2:82800872-82800891 None:intergenic 45.0%
GTAAGTCTGCGACGGAAATT+AGG + chr1.2:82800663-82800682 MS.gene065073:CDS 45.0%
GTCGGTATAGCCTCTATTCA+AGG - chr1.2:82801471-82801490 None:intergenic 45.0%
TAAACAAGGACGTCAAGTGG+CGG + chr1.2:82801540-82801559 MS.gene065073:intron 45.0%
TGTGACAAGAACACCAACTC+AGG + chr1.2:82801789-82801808 MS.gene065073:CDS 45.0%
! CAGTTCTGATCAATAGGCAC+AGG - chr1.2:82801919-82801938 None:intergenic 45.0%
! CATGGACTGAAGAAGAACAC+AGG + chr1.2:82800870-82800889 MS.gene065073:CDS 45.0%
! GGAACCCAGTTCTGATCAAT+AGG - chr1.2:82801925-82801944 None:intergenic 45.0%
! GGTGATAACGAGAGGAAGAA+AGG + chr1.2:82800842-82800861 MS.gene065073:CDS 45.0%
!! ACTGGAAATTGATTCGGGTC+GGG + chr1.2:82800715-82800734 MS.gene065073:CDS 45.0%
!! CTGTGCAGGCTGTTTCTTAT+TGG + chr1.2:82801715-82801734 MS.gene065073:intron 45.0%
!!! AATTTAATTTTAATCTTTTT+TGG + chr1.2:82801053-82801072 MS.gene065073:intron 5.0%
!!! ATTTAATTTTAATCTTTTTT+GGG + chr1.2:82801054-82801073 MS.gene065073:intron 5.0%
AAGATCGCGGAACAAGTTCC+AGG + chr1.2:82800641-82800660 MS.gene065073:CDS 50.0%
AGTTCCAGGTAAGTCTGCGA+CGG + chr1.2:82800655-82800674 MS.gene065073:CDS 50.0%
ATTTCCGTCGCAGACTTACC+TGG - chr1.2:82800662-82800681 None:intergenic 50.0%
GACAAGAACACCAACTCAGG+TGG + chr1.2:82801792-82801811 MS.gene065073:CDS 50.0%
GGGCTGACCAAATTTGGGAA+AGG + chr1.2:82801736-82801755 MS.gene065073:CDS 50.0%
GTATCGGGAGTCAGTTGCTA+TGG + chr1.2:82800496-82800515 MS.gene065073:CDS 50.0%
TCGTTATCACCGCCATGTCT+CGG - chr1.2:82800833-82800852 None:intergenic 50.0%
TCTGATGAATCGGCTGTGAG+TGG + chr1.2:82800755-82800774 MS.gene065073:CDS 50.0%
TGTTGCATTGAACCACCACC+AGG - chr1.2:82801952-82801971 None:intergenic 50.0%
! TTTGGTTCGAAGCCGAGACA+TGG + chr1.2:82800818-82800837 MS.gene065073:CDS 50.0%
!! AATTGATTCGGGTCGGGTTG+AGG + chr1.2:82800721-82800740 MS.gene065073:CDS 50.0%
!! GTCCACTGAGTTGGTTGAGT+CGG - chr1.2:82800551-82800570 None:intergenic 50.0%
!! TGGTGGTGGATTGGCTGAAT+GGG + chr1.2:82800775-82800794 MS.gene065073:CDS 50.0%
ATTGAACCACCACCAGGAGG+AGG - chr1.2:82801946-82801965 None:intergenic 55.0%
CTCGCTCGAACAGCTTGTCA+TGG - chr1.2:82800580-82800599 None:intergenic 55.0%
GATGAATCGGCTGTGAGTGG+TGG + chr1.2:82800758-82800777 MS.gene065073:CDS 55.0%
GTTCGAGCGAGCTCTGTTGA+TGG + chr1.2:82800589-82800608 MS.gene065073:CDS 55.0%
TGCATTGAACCACCACCAGG+AGG - chr1.2:82801949-82801968 None:intergenic 55.0%
TGGTCTCGAGTCCACTGAGT+TGG - chr1.2:82800560-82800579 None:intergenic 55.0%
! GACATGGCGGTGATAACGAG+AGG + chr1.2:82800834-82800853 MS.gene065073:CDS 55.0%
! GATGGTGCCGGAGGATTTAC+CGG + chr1.2:82800607-82800626 MS.gene065073:CDS 55.0%
!! GTGGTGGTGGATTGGCTGAA+TGG + chr1.2:82800774-82800793 MS.gene065073:CDS 55.0%
AACTGGGTTCCTCCTCCTGG+TGG + chr1.2:82801934-82801953 MS.gene065073:CDS 60.0%
CACCGGTCCGGTAAATCCTC+CGG - chr1.2:82800617-82800636 None:intergenic 60.0%
CAGAACTGGGTTCCTCCTCC+TGG + chr1.2:82801931-82801950 MS.gene065073:CDS 60.0%
GAATCGGCTGTGAGTGGTGG+TGG + chr1.2:82800761-82800780 MS.gene065073:CDS 60.0%
GGAGGATTTACCGGACCGGT+GGG + chr1.2:82800616-82800635 MS.gene065073:CDS 60.0%
GGTTCGAAGCCGAGACATGG+CGG + chr1.2:82800821-82800840 MS.gene065073:CDS 60.0%
GTTCCGCGATCTTCTCCCAC+CGG - chr1.2:82800634-82800653 None:intergenic 60.0%
TGCCGGAGGATTTACCGGAC+CGG + chr1.2:82800612-82800631 MS.gene065073:CDS 60.0%
! GCATGGCTAGCCACCTGAGT+TGG - chr1.2:82801805-82801824 None:intergenic 60.0%
! GGCCGACTCAACCAACTCAG+TGG + chr1.2:82800546-82800565 MS.gene065073:CDS 60.0%
!! AGCTCTGTTGATGGTGCCGG+AGG + chr1.2:82800598-82800617 MS.gene065073:CDS 60.0%
!! GCGAGCTCTGTTGATGGTGC+CGG + chr1.2:82800595-82800614 MS.gene065073:CDS 60.0%
!! GGCTGTGAGTGGTGGTGGAT+TGG + chr1.2:82800766-82800785 MS.gene065073:CDS 60.0%
CGGAGGATTTACCGGACCGG+TGG + chr1.2:82800615-82800634 MS.gene065073:CDS 65.0%
GCGATCTTCTCCCACCGGTC+CGG - chr1.2:82800629-82800648 None:intergenic 65.0%
GGACCGGTGGGAGAAGATCG+CGG + chr1.2:82800628-82800647 MS.gene065073:CDS 65.0%
TGGGTTCCTCCTCCTGGTGG+TGG + chr1.2:82801937-82801956 MS.gene065073:CDS 65.0%
TTGAGTCGGCCACCGCGTCG+TGG - chr1.2:82800537-82800556 None:intergenic 70.0%
AGTCGGCCACCGCGTCGTGG+CGG - chr1.2:82800534-82800553 None:intergenic 75.0%
! CCACCACCGCCGCCACGACG+CGG + chr1.2:82800522-82800541 MS.gene065073:CDS 80.0%
! CCACCGCCGCCACGACGCGG+TGG + chr1.2:82800525-82800544 MS.gene065073:CDS 85.0%
! CCACCGCGTCGTGGCGGCGG+TGG - chr1.2:82800528-82800547 None:intergenic 85.0%
! CCGCGTCGTGGCGGCGGTGG+TGG - chr1.2:82800525-82800544 None:intergenic 85.0%
! CGGCCACCGCGTCGTGGCGG+CGG - chr1.2:82800531-82800550 None:intergenic 85.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 82800494 82802062 82800494 ID=MS.gene065073
chr1.2 mRNA 82800494 82802062 82800494 ID=MS.gene065073.t1;Parent=MS.gene065073
chr1.2 exon 82800494 82800891 82800494 ID=MS.gene065073.t1.exon1;Parent=MS.gene065073.t1
chr1.2 CDS 82800494 82800891 82800494 ID=cds.MS.gene065073.t1;Parent=MS.gene065073.t1
chr1.2 exon 82801723 82802062 82801723 ID=MS.gene065073.t1.exon2;Parent=MS.gene065073.t1
chr1.2 CDS 82801723 82802062 82801723 ID=cds.MS.gene065073.t1;Parent=MS.gene065073.t1
Gene Sequence

>MS.gene065073

ATGTATCGGGAGTCAGTTGCTATGGCTGCCACCACCGCCGCCACGACGCGGTGGCCGACTCAACCAACTCAGTGGACTCGAGACCATGACAAGCTGTTCGAGCGAGCTCTGTTGATGGTGCCGGAGGATTTACCGGACCGGTGGGAGAAGATCGCGGAACAAGTTCCAGGTAAGTCTGCGACGGAAATTAGGGATCACTATGAAGCTTTGGTTCATGATATACTGGAAATTGATTCGGGTCGGGTTGAGGTGCCGAGTTATTCTGATGAATCGGCTGTGAGTGGTGGTGGATTGGCTGAATGGGATTCTTCGAATCAAATTTCGTTTGGTTCGAAGCCGAGACATGGCGGTGATAACGAGAGGAAGAAAGGAACTCCATGGACTGAAGAAGAACACAGGTATATCAAGATTCTCAAAGATTTTACTTCATTTCAATTTAGTTTTTTTTTTTTTTCTGGGTTTATTGGTTTTGATTTTAGGGTTTTCTATTTTTTTTTTCCTTTATCTTTAACATAACTTTTTGGAATTGGATGCCATAATTTTAAGGAATGGGAATAAAAATTTAATTTTAATCTTTTTTGGGGGGTTTCTGGGTTTATGTTATAATTTTTTAAAATATTAGTTTTTTAGCTGAAGATTTTGAAGTGAAAATCATTAAAATGTTAGTTATTTTATAACTAATTCAAATTTGATTGCTAAGAAACTGAAATTAGAATCAAAAATACATATCATCAAATATATGCATTGAAAGACATGCATTTGAAGATTGTCTAAACCCTCAAATTTTGTGGTTTGCTCATAGCAAAAAAAAAAAAAAAAAAAAAAACGGTGTATTCATGTTAAACAATGATGTCAAATAGCGGTTGCAGTGGTTAGATAGCATAGCAGAATTTGAACAATTCACTTTTAATCCGCAATACACTTTTTAGAACCTATCACTTTTGATCGGTAATACACTTTTTAGTACAAAATGTCCTTGAATAGAGGCTATACCGACACTATAGCAGTTTAACATAGCGGAATTTGATCCCACCGCTGTTTTATGTTAAACAAGGACGTCAAGTGGCGGTTATAGTAGTTAGATAGCGTAGCAGAATTTGAACAAATCACTTTGGATCTTCAATACATTATTTAGTACAAAATGTAGTTAAATAGAGGCTATATCGACACTAGCAATAATTTAACATAGAGGAATTTAAACCCGCCACTATTTTATGTTATCTGTGCAGGCTGTTTCTTATTGGGCTGACCAAATTTGGGAAAGGAGATTGGAGAAGCATTTCAAGGAATGTTGTTGTGACAAGAACACCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTTCTTCGCCAGAATTCGGTGAAGAAAGAGAGGAAGAGATCAAGTATTCATGACATTACATCGGTGGACAGTAACTCAGCTCCTGTGCCTATTGATCAGAACTGGGTTCCTCCTCCTGGTGGTGGTTCAATGCAACAACAGTCTCAAGAAATGCATCATTATCCGTCAAACGATTTGCAGGATCAAATGAGTGCATATGGGTATTCAAATTATGGCTTTCAAATGTAA
Protein sequence

>MS.gene065073.t1

MYRESVAMAATTAATTRWPTQPTQWTRDHDKLFERALLMVPEDLPDRWEKIAEQVPGKSATEIRDHYEALVHDILEIDSGRVEVPSYSDESAVSGGGLAEWDSSNQISFGSKPRHGGDNERKKGTPWTEEEHRLFLIGLTKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITSVDSNSAPVPIDQNWVPPPGGGSMQQQSQEMHHYPSNDLQDQMSAYGYSNYGFQM