Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06539.t1 | XP_013461494.1 | 92.9 | 324 | 9 | 3 | 1 | 324 | 1 | 310 | 4.60E-160 | 573.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06539.t1 | Q9LY00 | 37.2 | 301 | 155 | 9 | 13 | 297 | 7 | 289 | 3.2e-37 | 157.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06539.t1 | A0A072V0I2 | 92.9 | 324 | 9 | 3 | 1 | 324 | 1 | 310 | 3.3e-160 | 573.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06539.t1 | TF | WRKY |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049409 | MS.gene06539 | 0.974036 | 1.87E-137 | -1.69E-46 |
| MS.gene049567 | MS.gene06539 | 0.812608 | 3.89E-51 | -1.69E-46 |
| MS.gene050148 | MS.gene06539 | 0.820866 | 5.47E-53 | -1.69E-46 |
| MS.gene051492 | MS.gene06539 | 0.803834 | 2.88E-49 | -1.69E-46 |
| MS.gene051493 | MS.gene06539 | 0.802307 | 5.97E-49 | -1.69E-46 |
| MS.gene051494 | MS.gene06539 | 0.801679 | 8.03E-49 | -1.69E-46 |
| MS.gene053643 | MS.gene06539 | 0.8041 | 2.54E-49 | -1.69E-46 |
| MS.gene058477 | MS.gene06539 | 0.835269 | 1.85E-56 | -1.69E-46 |
| MS.gene05861 | MS.gene06539 | 0.841002 | 6.19E-58 | -1.69E-46 |
| MS.gene05862 | MS.gene06539 | 0.841275 | 5.24E-58 | -1.69E-46 |
| MS.gene05969 | MS.gene06539 | 0.838025 | 3.67E-57 | -1.69E-46 |
| MS.gene059774 | MS.gene06539 | 0.836136 | 1.12E-56 | -1.69E-46 |
| MS.gene060697 | MS.gene06539 | 0.834454 | 2.97E-56 | -1.69E-46 |
| MS.gene061047 | MS.gene06539 | 0.833188 | 6.16E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06539.t1 | MTR_3g093830 | 92.901 | 324 | 9 | 3 | 1 | 324 | 1 | 310 | 0.0 | 601 |
| MS.gene06539.t1 | MTR_5g067700 | 40.476 | 294 | 102 | 11 | 5 | 289 | 5 | 234 | 9.85e-53 | 173 |
| MS.gene06539.t1 | MTR_7g073380 | 39.000 | 200 | 93 | 5 | 17 | 210 | 15 | 191 | 5.58e-38 | 137 |
| MS.gene06539.t1 | MTR_7g073430 | 37.915 | 211 | 100 | 7 | 7 | 210 | 4 | 190 | 2.24e-35 | 130 |
| MS.gene06539.t1 | MTR_0002s1250 | 38.806 | 201 | 99 | 6 | 18 | 216 | 8 | 186 | 1.27e-34 | 127 |
| MS.gene06539.t1 | MTR_8g005750 | 38.571 | 210 | 97 | 6 | 18 | 226 | 6 | 184 | 3.66e-31 | 118 |
| MS.gene06539.t1 | MTR_3g090860 | 33.190 | 232 | 123 | 9 | 15 | 229 | 5 | 221 | 1.20e-24 | 102 |
| MS.gene06539.t1 | MTR_2g075680 | 32.819 | 259 | 132 | 10 | 14 | 256 | 13 | 245 | 1.35e-24 | 101 |
| MS.gene06539.t1 | MTR_2g075690 | 33.772 | 228 | 125 | 7 | 3 | 222 | 5 | 214 | 2.43e-24 | 100 |
| MS.gene06539.t1 | MTR_2g075700 | 34.783 | 230 | 115 | 8 | 9 | 222 | 7 | 217 | 4.48e-23 | 97.4 |
| MS.gene06539.t1 | MTR_8g032510 | 34.091 | 220 | 107 | 9 | 18 | 226 | 9 | 201 | 6.72e-23 | 96.7 |
| MS.gene06539.t1 | MTR_7g117200 | 30.097 | 206 | 126 | 4 | 7 | 212 | 2 | 189 | 3.13e-21 | 92.8 |
| MS.gene06539.t1 | MTR_8g027860 | 56.716 | 67 | 29 | 0 | 134 | 200 | 129 | 195 | 1.71e-20 | 90.9 |
| MS.gene06539.t1 | MTR_8g099350 | 33.679 | 193 | 106 | 6 | 17 | 200 | 12 | 191 | 6.82e-20 | 89.4 |
| MS.gene06539.t1 | MTR_2g075750 | 42.529 | 87 | 49 | 1 | 140 | 226 | 27 | 112 | 3.46e-19 | 84.0 |
| MS.gene06539.t1 | MTR_2g075610 | 50.794 | 63 | 31 | 0 | 142 | 204 | 30 | 92 | 1.49e-18 | 82.4 |
| MS.gene06539.t1 | MTR_5g067680 | 35.938 | 128 | 75 | 1 | 87 | 207 | 141 | 268 | 3.33e-18 | 84.7 |
| MS.gene06539.t1 | MTR_5g073620 | 39.706 | 68 | 41 | 0 | 142 | 209 | 673 | 740 | 1.14e-12 | 69.3 |
| MS.gene06539.t1 | MTR_7g028415 | 46.377 | 69 | 33 | 2 | 131 | 199 | 84 | 148 | 3.98e-12 | 64.3 |
| MS.gene06539.t1 | MTR_7g028710 | 46.377 | 69 | 33 | 2 | 131 | 199 | 84 | 148 | 3.98e-12 | 64.3 |
| MS.gene06539.t1 | MTR_4g127040 | 40.000 | 90 | 44 | 2 | 125 | 206 | 221 | 308 | 6.41e-12 | 65.9 |
| MS.gene06539.t1 | MTR_7g079010 | 34.579 | 107 | 58 | 3 | 102 | 206 | 109 | 205 | 7.40e-12 | 64.3 |
| MS.gene06539.t1 | MTR_8g098945 | 46.154 | 65 | 33 | 1 | 134 | 198 | 122 | 184 | 7.94e-12 | 65.1 |
| MS.gene06539.t1 | MTR_8g028565 | 41.026 | 78 | 41 | 2 | 125 | 199 | 136 | 211 | 1.24e-11 | 65.1 |
| MS.gene06539.t1 | MTR_1g009613 | 38.462 | 91 | 44 | 3 | 125 | 205 | 238 | 326 | 1.48e-11 | 64.7 |
| MS.gene06539.t1 | MTR_5g043880 | 38.372 | 86 | 49 | 2 | 142 | 227 | 125 | 206 | 2.00e-11 | 63.9 |
| MS.gene06539.t1 | MTR_8g096730 | 32.110 | 109 | 64 | 3 | 90 | 198 | 26 | 124 | 7.33e-11 | 60.1 |
| MS.gene06539.t1 | MTR_7g062220 | 52.632 | 57 | 24 | 1 | 142 | 198 | 125 | 178 | 8.71e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06539.t1 | AT3G56400 | 44.144 | 222 | 106 | 5 | 13 | 234 | 7 | 210 | 1.43e-50 | 170 |
| MS.gene06539.t1 | AT2G40750 | 34.568 | 324 | 184 | 7 | 10 | 310 | 8 | 326 | 5.45e-47 | 162 |
| MS.gene06539.t1 | AT5G24110 | 34.715 | 193 | 89 | 7 | 13 | 200 | 12 | 172 | 6.29e-23 | 97.1 |
| MS.gene06539.t1 | AT2G46400 | 30.357 | 224 | 102 | 5 | 13 | 226 | 4 | 183 | 8.96e-22 | 93.6 |
| MS.gene06539.t1 | AT4G11070 | 31.280 | 211 | 121 | 7 | 13 | 208 | 7 | 208 | 1.13e-21 | 94.0 |
| MS.gene06539.t1 | AT1G66550 | 34.054 | 185 | 97 | 4 | 18 | 202 | 10 | 169 | 2.68e-21 | 91.7 |
| MS.gene06539.t1 | AT1G66550 | 34.595 | 185 | 91 | 6 | 18 | 202 | 10 | 164 | 6.19e-21 | 90.5 |
| MS.gene06539.t1 | AT1G66560 | 27.642 | 246 | 140 | 6 | 11 | 250 | 3 | 216 | 6.81e-20 | 87.8 |
| MS.gene06539.t1 | AT5G22570 | 28.704 | 216 | 114 | 4 | 18 | 217 | 11 | 202 | 7.38e-20 | 88.2 |
| MS.gene06539.t1 | AT1G66600 | 29.752 | 242 | 136 | 5 | 18 | 259 | 10 | 217 | 9.26e-20 | 87.0 |
| MS.gene06539.t1 | AT5G01900 | 32.973 | 185 | 100 | 4 | 18 | 201 | 9 | 170 | 3.08e-19 | 86.3 |
| MS.gene06539.t1 | AT4G11070 | 29.126 | 206 | 100 | 6 | 13 | 208 | 7 | 176 | 1.18e-18 | 84.7 |
| MS.gene06539.t1 | AT2G40740 | 44.186 | 86 | 42 | 1 | 142 | 221 | 174 | 259 | 2.34e-18 | 84.3 |
| MS.gene06539.t1 | AT2G40740 | 44.186 | 86 | 42 | 1 | 142 | 221 | 183 | 268 | 3.10e-18 | 84.0 |
| MS.gene06539.t1 | AT4G23810 | 50.704 | 71 | 34 | 1 | 142 | 211 | 159 | 229 | 5.23e-18 | 83.6 |
| MS.gene06539.t1 | AT5G45260 | 35.714 | 154 | 92 | 4 | 47 | 198 | 1117 | 1265 | 2.97e-16 | 80.1 |
| MS.gene06539.t1 | AT1G80590 | 32.432 | 185 | 77 | 5 | 18 | 202 | 10 | 146 | 1.13e-14 | 72.8 |
| MS.gene06539.t1 | AT4G23550 | 49.153 | 59 | 28 | 1 | 140 | 198 | 139 | 195 | 7.10e-12 | 65.9 |
| MS.gene06539.t1 | AT5G52830 | 41.772 | 79 | 40 | 2 | 125 | 199 | 145 | 221 | 7.21e-12 | 65.9 |
| MS.gene06539.t1 | AT5G13080 | 43.243 | 74 | 38 | 2 | 126 | 199 | 53 | 122 | 2.48e-11 | 61.2 |
| MS.gene06539.t1 | AT2G46130 | 42.029 | 69 | 35 | 2 | 140 | 206 | 29 | 94 | 2.55e-11 | 60.5 |
| MS.gene06539.t1 | AT4G01250 | 38.961 | 77 | 42 | 3 | 125 | 198 | 109 | 183 | 5.63e-11 | 62.8 |
| MS.gene06539.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.36e-11 | 62.4 |
| MS.gene06539.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.36e-11 | 62.4 |
| MS.gene06539.t1 | AT1G69310 | 30.216 | 139 | 78 | 5 | 96 | 229 | 97 | 221 | 8.36e-11 | 62.4 |
Find 61 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAATCTTGAAATTGATTT+TGG | 0.027971 | 3.2:+78699965 | MS.gene06539:CDS |
| TATGTAATTTGGTACATTTC+TGG | 0.119421 | 3.2:-78699632 | None:intergenic |
| TTGTTGGCAGTGACAGTTTC+AGG | 0.206708 | 3.2:-78698107 | None:intergenic |
| TGCAACCTTGGTCATGCTTC+CGG | 0.212153 | 3.2:-78699574 | None:intergenic |
| CATTCTCTGAAGATACTAAT+TGG | 0.227820 | 3.2:+78699705 | MS.gene06539:CDS |
| TGATGTTACTGACAACTTAT+TGG | 0.245112 | 3.2:+78699871 | MS.gene06539:CDS |
| GCAACCTTGGTCATGCTTCC+GGG | 0.281835 | 3.2:-78699573 | None:intergenic |
| TTCTATCAATTGTACCTGTT+TGG | 0.295646 | 3.2:-78699603 | None:intergenic |
| CAGAATCATGTGAATCATTC+AGG | 0.322565 | 3.2:+78698323 | MS.gene06539:CDS |
| CATGTGAATCATTCAGGTTC+AGG | 0.330373 | 3.2:+78698329 | MS.gene06539:CDS |
| AGTAGTATTGTCGTCGTTGT+TGG | 0.342310 | 3.2:-78699840 | None:intergenic |
| AAGAATCCTGTTTGTTCTGA+TGG | 0.357623 | 3.2:+78698197 | MS.gene06539:CDS |
| GTCTCCTTCTGTTAAGGAAT+TGG | 0.359709 | 3.2:+78698220 | MS.gene06539:CDS |
| GTTTGGTTGCTTTGCAACCT+TGG | 0.376612 | 3.2:-78699586 | None:intergenic |
| TAATTTGCAGGAGTTACTTC+AGG | 0.382346 | 3.2:+78699546 | MS.gene06539:intron |
| GAAAGCCAATGTATGTAATT+TGG | 0.392701 | 3.2:-78699643 | None:intergenic |
| TCAGAGAATGAGACCATTTG+TGG | 0.397937 | 3.2:-78699692 | None:intergenic |
| TGATGGGTCTCCTTCTGTTA+AGG | 0.399624 | 3.2:+78698214 | MS.gene06539:CDS |
| ACTCATAAAAGAGCTTCTTC+AGG | 0.399737 | 3.2:+78698139 | MS.gene06539:CDS |
| CAATTGGTGACACTCATTCC+TGG | 0.409828 | 3.2:+78698671 | MS.gene06539:CDS |
| GTAGTATTGTCGTCGTTGTT+GGG | 0.410207 | 3.2:-78699839 | None:intergenic |
| ATTCTCTGAAGATACTAATT+GGG | 0.419258 | 3.2:+78699706 | MS.gene06539:CDS |
| CCTCTTCGATCCTTTGTAGT+TGG | 0.426598 | 3.2:-78698434 | None:intergenic |
| ACCATAGTCTCTAAAACAAT+TGG | 0.428053 | 3.2:+78698655 | MS.gene06539:CDS |
| TTCAGGGGAACATGGTTCAT+TGG | 0.430865 | 3.2:+78698346 | MS.gene06539:CDS |
| AGAATCCTGTTTGTTCTGAT+GGG | 0.439454 | 3.2:+78698198 | MS.gene06539:CDS |
| ACCTTGGGAAATTAGAATTG+AGG | 0.441878 | 3.2:-78698717 | None:intergenic |
| TCCTTCTGTTAAGGAATTGG+TGG | 0.442137 | 3.2:+78698223 | MS.gene06539:CDS |
| AGACCATTTGTGGAGTTTGT+AGG | 0.471099 | 3.2:-78699682 | None:intergenic |
| CTTCTGACCGTACTTTCTCC+AGG | 0.478180 | 3.2:-78698689 | None:intergenic |
| CACCCTACAAACTCCACAAA+TGG | 0.486229 | 3.2:+78699679 | MS.gene06539:CDS |
| ACTTATTGGATCCTAGTTTG+TGG | 0.490456 | 3.2:+78699885 | MS.gene06539:CDS |
| ATGTGAATCATTCAGGTTCA+GGG | 0.513638 | 3.2:+78698330 | MS.gene06539:CDS |
| CTCATAAAAGAGCTTCTTCA+GGG | 0.513650 | 3.2:+78698140 | MS.gene06539:CDS |
| CATTCAGGTTCAGGGGAACA+TGG | 0.514743 | 3.2:+78698338 | MS.gene06539:CDS |
| GCAGGAATACACAATATCCT+TGG | 0.514816 | 3.2:-78699933 | None:intergenic |
| AGGTTGCAAAGCAACCAAAC+AGG | 0.523803 | 3.2:+78699589 | MS.gene06539:CDS |
| GACCATTTGTGGAGTTTGTA+GGG | 0.524922 | 3.2:-78699681 | None:intergenic |
| AGGGGAACATGGTTCATTGG+TGG | 0.531988 | 3.2:+78698349 | MS.gene06539:CDS |
| GGAGACCCATCAGAACAAAC+AGG | 0.533380 | 3.2:-78698203 | None:intergenic |
| CACATGTTATTAGCTCAGAA+AGG | 0.537868 | 3.2:+78699795 | MS.gene06539:CDS |
| GAAGAGGTTCCTACAAAAGA+AGG | 0.538026 | 3.2:+78698450 | MS.gene06539:CDS |
| TTAAAATCAGACCACAAACT+AGG | 0.545977 | 3.2:-78699896 | None:intergenic |
| GCCACCAATTCCTTAACAGA+AGG | 0.556097 | 3.2:-78698224 | None:intergenic |
| TGAAGATTGTAGTTTAGATG+AGG | 0.565987 | 3.2:+78698295 | MS.gene06539:CDS |
| ATGTACCAAATTACATACAT+TGG | 0.567198 | 3.2:+78699638 | MS.gene06539:CDS |
| CTGGAGAAAGTACGGTCAGA+AGG | 0.567429 | 3.2:+78698690 | MS.gene06539:CDS |
| TCCTCAATTCTAATTTCCCA+AGG | 0.568294 | 3.2:+78698716 | MS.gene06539:CDS |
| GTCAGAACCTCCTTTGAGTG+AGG | 0.572819 | 3.2:-78699752 | None:intergenic |
| GGAGTTACTTCAGGTGCACC+CGG | 0.575709 | 3.2:+78699555 | MS.gene06539:intron |
| ACTCATTCCTGGAGAAAGTA+CGG | 0.586004 | 3.2:+78698682 | MS.gene06539:CDS |
| GAGATTGTCGCCAACTACAA+AGG | 0.592832 | 3.2:+78698424 | MS.gene06539:CDS |
| GAATTCTAATCCTCACTCAA+AGG | 0.633382 | 3.2:+78699742 | MS.gene06539:CDS |
| CATTTGTGGAGTTTGTAGGG+TGG | 0.641904 | 3.2:-78699678 | None:intergenic |
| TTCTAATCCTCACTCAAAGG+AGG | 0.641909 | 3.2:+78699745 | MS.gene06539:CDS |
| TTGTCAGTAACATCACTCCT+CGG | 0.646183 | 3.2:-78699863 | None:intergenic |
| TGTGAATCATTCAGGTTCAG+GGG | 0.655461 | 3.2:+78698331 | MS.gene06539:CDS |
| TGCACCCGGAAGCATGACCA+AGG | 0.656558 | 3.2:+78699569 | MS.gene06539:CDS |
| GCAGGAAAACAGATGAGACA+AGG | 0.694593 | 3.2:+78698632 | MS.gene06539:intron |
| CCAACTACAAAGGATCGAAG+AGG | 0.701163 | 3.2:+78698434 | MS.gene06539:CDS |
| ACGACGACAATACTACTCCG+AGG | 0.763721 | 3.2:+78699846 | MS.gene06539:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAACTAATTAG+TGG | - | chr3.2:78699373-78699392 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAACTAATTAGT+GGG | - | chr3.2:78699372-78699391 | None:intergenic | 10.0% |
| !! | GATATTTATTAAAATTGATT+TGG | + | chr3.2:78698984-78699003 | MS.gene06539:intron | 10.0% |
| !!! | AAATTTTACACTTAAATTTA+TGG | + | chr3.2:78699065-78699084 | MS.gene06539:intron | 10.0% |
| !! | ATATAATCTCATTTCAAAAT+CGG | - | chr3.2:78699328-78699347 | None:intergenic | 15.0% |
| !! | TTAAGTGTAAAATTTACTTT+GGG | - | chr3.2:78699060-78699079 | None:intergenic | 15.0% |
| !! | TTTAAGTGTAAAATTTACTT+TGG | - | chr3.2:78699061-78699080 | None:intergenic | 15.0% |
| !!! | AAAATCTTGAAATTGATTTT+GGG | + | chr3.2:78699966-78699985 | MS.gene06539:CDS | 15.0% |
| !! | GAATTGATTAACTAATTAGT+GGG | - | chr3.2:78699407-78699426 | None:intergenic | 20.0% |
| !! | TAAGTGTAAAATTTACTTTG+GGG | - | chr3.2:78699059-78699078 | None:intergenic | 20.0% |
| !! | TAGAAAACAAAAAAATCAAC+AGG | - | chr3.2:78698546-78698565 | None:intergenic | 20.0% |
| !! | TGAATTGATTAACTAATTAG+TGG | - | chr3.2:78699408-78699427 | None:intergenic | 20.0% |
| !! | TTACACTTAAATTTATGGTT+AGG | + | chr3.2:78699070-78699089 | MS.gene06539:intron | 20.0% |
| !! | TTAGATGTGTATAATTGATT+TGG | + | chr3.2:78698949-78698968 | MS.gene06539:intron | 20.0% |
| !! | TTATAGTTTCAACAAAATCA+TGG | + | chr3.2:78699255-78699274 | MS.gene06539:intron | 20.0% |
| !! | TTTATTCTTAATTATTGTGC+AGG | + | chr3.2:78698614-78698633 | MS.gene06539:intron | 20.0% |
| !!! | AAATCTTGAAATTGATTTTG+GGG | + | chr3.2:78699967-78699986 | MS.gene06539:CDS | 20.0% |
| !!! | CAAAATCTTGAAATTGATTT+TGG | + | chr3.2:78699965-78699984 | MS.gene06539:CDS | 20.0% |
| ! | ACTTGCTCATATTGTATAAA+TGG | - | chr3.2:78698818-78698837 | None:intergenic | 25.0% |
| ! | AGGAAAATAATGATTACCTT+GGG | - | chr3.2:78698735-78698754 | None:intergenic | 25.0% |
| ! | ATGTACCAAATTACATACAT+TGG | + | chr3.2:78699638-78699657 | MS.gene06539:CDS | 25.0% |
| ! | TATGTAATTTGGTACATTTC+TGG | - | chr3.2:78699635-78699654 | None:intergenic | 25.0% |
| ! | TCAACTCTTACAAAATCAAT+TGG | + | chr3.2:78699161-78699180 | MS.gene06539:intron | 25.0% |
| ! | TGAGATTATATACTATCAAG+TGG | + | chr3.2:78699337-78699356 | MS.gene06539:intron | 25.0% |
| !! | AAAATAGTACCTTCTTTTGT+AGG | - | chr3.2:78698462-78698481 | None:intergenic | 25.0% |
| !! | ATTCTCTGAAGATACTAATT+GGG | + | chr3.2:78699706-78699725 | MS.gene06539:CDS | 25.0% |
| !!! | AAGAAGGTACTATTTTTGTA+CGG | + | chr3.2:78698466-78698485 | MS.gene06539:intron | 25.0% |
| !!! | ACATGTTTTTTTTTCCTTGT+TGG | + | chr3.2:78698499-78698518 | MS.gene06539:intron | 25.0% |
| !!! | AGATTATAGAAGCATTTTAG+AGG | + | chr3.2:78698921-78698940 | MS.gene06539:intron | 25.0% |
| AAATCAGTAGAAAAAAGCAG+AGG | - | chr3.2:78698755-78698774 | None:intergenic | 30.0% | |
| ATATTGAAACATGCACATAG+CGG | - | chr3.2:78699208-78699227 | None:intergenic | 30.0% | |
| ATGTGCATGTTTCAATATCA+TGG | + | chr3.2:78699210-78699229 | MS.gene06539:intron | 30.0% | |
| CCTGCAAATTATCATTGAAA+AGG | - | chr3.2:78699537-78699556 | None:intergenic | 30.0% | |
| GAAAGCCAATGTATGTAATT+TGG | - | chr3.2:78699646-78699665 | None:intergenic | 30.0% | |
| GAGGAAAATAATGATTACCT+TGG | - | chr3.2:78698736-78698755 | None:intergenic | 30.0% | |
| TGAAGATTGTAGTTTAGATG+AGG | + | chr3.2:78698295-78698314 | MS.gene06539:CDS | 30.0% | |
| TGATGTTACTGACAACTTAT+TGG | + | chr3.2:78699871-78699890 | MS.gene06539:CDS | 30.0% | |
| TTAAAATCAGACCACAAACT+AGG | - | chr3.2:78699899-78699918 | None:intergenic | 30.0% | |
| TTCTATCAATTGTACCTGTT+TGG | - | chr3.2:78699606-78699625 | None:intergenic | 30.0% | |
| TTGGAATGAAATGAAAACGT+GGG | + | chr3.2:78698518-78698537 | MS.gene06539:intron | 30.0% | |
| ! | CATTCTCTGAAGATACTAAT+TGG | + | chr3.2:78699705-78699724 | MS.gene06539:CDS | 30.0% |
| ! | GTTTTCATTTCATTCCAACA+AGG | - | chr3.2:78698516-78698535 | None:intergenic | 30.0% |
| ! | TATGAGTAGCTTCTTTTTGT+TGG | - | chr3.2:78698126-78698145 | None:intergenic | 30.0% |
| !! | ACCATAGTCTCTAAAACAAT+TGG | + | chr3.2:78698655-78698674 | MS.gene06539:CDS | 30.0% |
| !! | CCTTTTCAATGATAATTTGC+AGG | + | chr3.2:78699534-78699553 | MS.gene06539:intron | 30.0% |
| !! | TAGTTTGTGGTCTGATTTTA+AGG | + | chr3.2:78699898-78699917 | MS.gene06539:CDS | 30.0% |
| !! | TATGGTTAGGTTCACTTTTA+CGG | + | chr3.2:78699083-78699102 | MS.gene06539:intron | 30.0% |
| !!! | ACCAATTGTTTTAGAGACTA+TGG | - | chr3.2:78698659-78698678 | None:intergenic | 30.0% |
| AAGAATCCTGTTTGTTCTGA+TGG | + | chr3.2:78698197-78698216 | MS.gene06539:CDS | 35.0% | |
| ACCTTGGGAAATTAGAATTG+AGG | - | chr3.2:78698720-78698739 | None:intergenic | 35.0% | |
| ACTCATAAAAGAGCTTCTTC+AGG | + | chr3.2:78698139-78698158 | MS.gene06539:CDS | 35.0% | |
| ACTTATTGGATCCTAGTTTG+TGG | + | chr3.2:78699885-78699904 | MS.gene06539:CDS | 35.0% | |
| AGAATCCTGTTTGTTCTGAT+GGG | + | chr3.2:78698198-78698217 | MS.gene06539:CDS | 35.0% | |
| CACATGTTATTAGCTCAGAA+AGG | + | chr3.2:78699795-78699814 | MS.gene06539:CDS | 35.0% | |
| CAGAATCATGTGAATCATTC+AGG | + | chr3.2:78698323-78698342 | MS.gene06539:CDS | 35.0% | |
| CTCATAAAAGAGCTTCTTCA+GGG | + | chr3.2:78698140-78698159 | MS.gene06539:CDS | 35.0% | |
| GAATTCTAATCCTCACTCAA+AGG | + | chr3.2:78699742-78699761 | MS.gene06539:CDS | 35.0% | |
| GTTGGAATGAAATGAAAACG+TGG | + | chr3.2:78698517-78698536 | MS.gene06539:intron | 35.0% | |
| TCCTCAATTCTAATTTCCCA+AGG | + | chr3.2:78698716-78698735 | MS.gene06539:CDS | 35.0% | |
| ! | ATGTGAATCATTCAGGTTCA+GGG | + | chr3.2:78698330-78698349 | MS.gene06539:CDS | 35.0% |
| ! | TAAGGATTTTGAACTCTCCA+AGG | + | chr3.2:78699916-78699935 | MS.gene06539:CDS | 35.0% |
| ! | TAATTTGCAGGAGTTACTTC+AGG | + | chr3.2:78699546-78699565 | MS.gene06539:intron | 35.0% |
| !!! | AAGATTTTGAGATTCAGTGC+AGG | - | chr3.2:78699954-78699973 | None:intergenic | 35.0% |
| !!! | ACTATTTTTGTACGGACACA+AGG | + | chr3.2:78698474-78698493 | MS.gene06539:intron | 35.0% |
| ACTCATTCCTGGAGAAAGTA+CGG | + | chr3.2:78698682-78698701 | MS.gene06539:CDS | 40.0% | |
| AGACCATTTGTGGAGTTTGT+AGG | - | chr3.2:78699685-78699704 | None:intergenic | 40.0% | |
| AGTAGTATTGTCGTCGTTGT+TGG | - | chr3.2:78699843-78699862 | None:intergenic | 40.0% | |
| GAAGAGGTTCCTACAAAAGA+AGG | + | chr3.2:78698450-78698469 | MS.gene06539:CDS | 40.0% | |
| GACCATTTGTGGAGTTTGTA+GGG | - | chr3.2:78699684-78699703 | None:intergenic | 40.0% | |
| GCAGGAATACACAATATCCT+TGG | - | chr3.2:78699936-78699955 | None:intergenic | 40.0% | |
| GTAGTATTGTCGTCGTTGTT+GGG | - | chr3.2:78699842-78699861 | None:intergenic | 40.0% | |
| GTCTCCTTCTGTTAAGGAAT+TGG | + | chr3.2:78698220-78698239 | MS.gene06539:CDS | 40.0% | |
| TCAGAGAATGAGACCATTTG+TGG | - | chr3.2:78699695-78699714 | None:intergenic | 40.0% | |
| TCCTTCTGTTAAGGAATTGG+TGG | + | chr3.2:78698223-78698242 | MS.gene06539:CDS | 40.0% | |
| TTCTAATCCTCACTCAAAGG+AGG | + | chr3.2:78699745-78699764 | MS.gene06539:CDS | 40.0% | |
| TTGTCAGTAACATCACTCCT+CGG | - | chr3.2:78699866-78699885 | None:intergenic | 40.0% | |
| ! | CATGTGAATCATTCAGGTTC+AGG | + | chr3.2:78698329-78698348 | MS.gene06539:CDS | 40.0% |
| ! | TGTGAATCATTCAGGTTCAG+GGG | + | chr3.2:78698331-78698350 | MS.gene06539:CDS | 40.0% |
| !! | ATAGCGGATGTTTGGTTATG+CGG | - | chr3.2:78699192-78699211 | None:intergenic | 40.0% |
| AAACACTATACCAGCTAGCG+CGG | - | chr3.2:78699466-78699485 | None:intergenic | 45.0% | |
| AGGTTGCAAAGCAACCAAAC+AGG | + | chr3.2:78699589-78699608 | MS.gene06539:CDS | 45.0% | |
| CACCCTACAAACTCCACAAA+TGG | + | chr3.2:78699679-78699698 | MS.gene06539:CDS | 45.0% | |
| CATTTGTGGAGTTTGTAGGG+TGG | - | chr3.2:78699681-78699700 | None:intergenic | 45.0% | |
| CCAACTACAAAGGATCGAAG+AGG | + | chr3.2:78698434-78698453 | MS.gene06539:CDS | 45.0% | |
| CCTCTTCGATCCTTTGTAGT+TGG | - | chr3.2:78698437-78698456 | None:intergenic | 45.0% | |
| GAGATTGTCGCCAACTACAA+AGG | + | chr3.2:78698424-78698443 | MS.gene06539:CDS | 45.0% | |
| GCAGGAAAACAGATGAGACA+AGG | + | chr3.2:78698632-78698651 | MS.gene06539:intron | 45.0% | |
| GCCACCAATTCCTTAACAGA+AGG | - | chr3.2:78698227-78698246 | None:intergenic | 45.0% | |
| TTCAGGGGAACATGGTTCAT+TGG | + | chr3.2:78698346-78698365 | MS.gene06539:CDS | 45.0% | |
| TTGTTGGCAGTGACAGTTTC+AGG | - | chr3.2:78698110-78698129 | None:intergenic | 45.0% | |
| ! | CAATTGGTGACACTCATTCC+TGG | + | chr3.2:78698671-78698690 | MS.gene06539:CDS | 45.0% |
| ! | GTTTGGTTGCTTTGCAACCT+TGG | - | chr3.2:78699589-78699608 | None:intergenic | 45.0% |
| ! | TAGCGGATGTTTGGTTATGC+GGG | - | chr3.2:78699191-78699210 | None:intergenic | 45.0% |
| ! | TGATGGGTCTCCTTCTGTTA+AGG | + | chr3.2:78698214-78698233 | MS.gene06539:CDS | 45.0% |
| !! | ACATGCACATAGCGGATGTT+TGG | - | chr3.2:78699200-78699219 | None:intergenic | 45.0% |
| !!! | TAGTAAAAAATATTTTTTAA+CGG | + | chr3.2:78698878-78698897 | MS.gene06539:intron | 5.0% |
| AACACTATACCAGCTAGCGC+GGG | - | chr3.2:78699465-78699484 | None:intergenic | 50.0% | |
| ACAAATTAACCCGCGCTAGC+TGG | + | chr3.2:78699453-78699472 | MS.gene06539:intron | 50.0% | |
| ACGACGACAATACTACTCCG+AGG | + | chr3.2:78699846-78699865 | MS.gene06539:CDS | 50.0% | |
| AGGGGAACATGGTTCATTGG+TGG | + | chr3.2:78698349-78698368 | MS.gene06539:CDS | 50.0% | |
| CTTCTGACCGTACTTTCTCC+AGG | - | chr3.2:78698692-78698711 | None:intergenic | 50.0% | |
| GGAGACCCATCAGAACAAAC+AGG | - | chr3.2:78698206-78698225 | None:intergenic | 50.0% | |
| GTCAGAACCTCCTTTGAGTG+AGG | - | chr3.2:78699755-78699774 | None:intergenic | 50.0% | |
| TGCAACCTTGGTCATGCTTC+CGG | - | chr3.2:78699577-78699596 | None:intergenic | 50.0% | |
| ! | CATTCAGGTTCAGGGGAACA+TGG | + | chr3.2:78698338-78698357 | MS.gene06539:CDS | 50.0% |
| ! | CTGGAGAAAGTACGGTCAGA+AGG | + | chr3.2:78698690-78698709 | MS.gene06539:CDS | 50.0% |
| GCAACCTTGGTCATGCTTCC+GGG | - | chr3.2:78699576-78699595 | None:intergenic | 55.0% | |
| GGAGTTACTTCAGGTGCACC+CGG | + | chr3.2:78699555-78699574 | MS.gene06539:intron | 55.0% | |
| ! | TGCACCCGGAAGCATGACCA+AGG | + | chr3.2:78699569-78699588 | MS.gene06539:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78698092 | 78700048 | 78698092 | ID=MS.gene06539 |
| chr3.2 | mRNA | 78698092 | 78700048 | 78698092 | ID=MS.gene06539.t1;Parent=MS.gene06539 |
| chr3.2 | exon | 78698092 | 78698471 | 78698092 | ID=MS.gene06539.t1.exon1;Parent=MS.gene06539.t1 |
| chr3.2 | CDS | 78698092 | 78698471 | 78698092 | ID=cds.MS.gene06539.t1;Parent=MS.gene06539.t1 |
| chr3.2 | exon | 78698636 | 78698737 | 78698636 | ID=MS.gene06539.t1.exon2;Parent=MS.gene06539.t1 |
| chr3.2 | CDS | 78698636 | 78698737 | 78698636 | ID=cds.MS.gene06539.t1;Parent=MS.gene06539.t1 |
| chr3.2 | exon | 78699556 | 78700048 | 78699556 | ID=MS.gene06539.t1.exon3;Parent=MS.gene06539.t1 |
| chr3.2 | CDS | 78699556 | 78700048 | 78699556 | ID=cds.MS.gene06539.t1;Parent=MS.gene06539.t1 |
| Gene Sequence |
| Protein sequence |
