AlfalfaGEDB | MS.gene066104

M. sativa cultivar XinJiangDaYe / MS.gene066104

KEGG: K09496
GO: GO:0000166 GO:0003674 GO:0005488 GO:0005515 GO:0005524 GO:0006457 GO:0008144 GO:0008150 GO:0009987 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0051082 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00118.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066104.t1	XP_013461938.1	99.8	532	1	0	1	532	1	532	1.80E-278	968

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066104.t1	Q9LV21	85.8	536	72	1	1	532	1	536	5.5e-252	871.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066104.t1	A0A072V3N8	99.8	532	1	0	1	532	1	532	1.3e-278	968.0

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene058827	MS.gene066104	0.833875	4.15E-56	-1.69E-46

PPI:

Gene1	Gene2	Type
MS.gene066104	MS.gene016844	PPI
MS.gene64440	MS.gene066104	PPI
MS.gene066104	MS.gene98781	PPI
MS.gene066104	MS.gene78457	PPI
MS.gene066104	MS.gene058828	PPI
MS.gene066104	MS.gene045185	PPI
MS.gene042598	MS.gene066104	PPI
MS.gene066104	MS.gene069339	PPI
MS.gene066104	MS.gene66973	PPI
MS.gene066104	MS.gene058827	PPI
MS.gene066104	MS.gene002442	PPI
MS.gene066104	MS.gene91774	PPI
MS.gene066104	MS.gene01091	PPI
MS.gene066104	MS.gene99406	PPI
MS.gene066104	MS.gene62993	PPI
MS.gene37845	MS.gene066104	PPI
MS.gene066104	MS.gene39837	PPI
MS.gene066104	MS.gene27902	PPI
MS.gene066104	MS.gene050877	PPI
MS.gene066104	MS.gene87976	PPI
MS.gene066104	MS.gene59146	PPI
MS.gene066104	MS.gene77617	PPI
MS.gene066104	MS.gene83135	PPI
MS.gene026610	MS.gene066104	PPI
MS.gene066104	MS.gene92155	PPI
MS.gene066104	MS.gene067072	PPI
MS.gene066104	MS.gene97876	PPI
MS.gene066104	MS.gene061963	PPI
MS.gene066104	MS.gene77306	PPI
MS.gene066104	MS.gene75537	PPI
MS.gene066104	MS.gene01425	PPI
MS.gene066104	MS.gene073967	PPI
MS.gene066104	MS.gene045180	PPI
MS.gene037185	MS.gene066104	PPI
MS.gene066104	MS.gene066566	PPI
MS.gene066104	MS.gene47857	PPI
MS.gene039012	MS.gene066104	PPI
MS.gene066104	MS.gene025228	PPI
MS.gene066104	MS.gene047578	PPI

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066104.t1	MTR_3g109925	99.812	532	1	0	1	532	1	532	0.0	1070
MS.gene066104.t1	MTR_3g109925	85.150	532	22	5	1	532	1	475	0.0	877
MS.gene066104.t1	MTR_8g105970	73.740	377	39	7	124	495	32	353	0.0	520
MS.gene066104.t1	MTR_3g086330	37.500	512	307	7	24	530	28	531	1.62e-103	321
MS.gene066104.t1	MTR_7g113470	34.816	517	318	7	20	530	14	517	3.12e-89	284
MS.gene066104.t1	MTR_7g067470	35.029	511	313	7	26	530	20	517	1.79e-88	282
MS.gene066104.t1	MTR_8g088270	34.476	525	316	9	24	529	19	534	1.03e-84	273
MS.gene066104.t1	MTR_5g087560	32.877	511	323	8	28	529	27	526	2.59e-79	259
MS.gene066104.t1	MTR_2g013540	30.528	511	344	7	25	530	20	524	7.56e-73	242
MS.gene066104.t1	MTR_6g032870	28.571	511	351	5	23	529	20	520	7.51e-69	231
MS.gene066104.t1	MTR_1g030650	27.626	514	358	5	23	532	23	526	1.49e-68	230
MS.gene066104.t1	MTR_7g406870	27.519	516	347	10	29	529	22	525	1.04e-50	182
MS.gene066104.t1	MTR_2g013540	28.534	382	259	8	154	530	3	375	3.07e-35	137
MS.gene066104.t1	MTR_4g057020	57.658	111	13	1	294	404	54	130	9.03e-29	111
MS.gene066104.t1	MTR_7g406870	25.647	425	289	10	120	529	1	413	1.24e-27	115
MS.gene066104.t1	MTR_8g010750	25.366	410	206	12	27	383	30	392	3.81e-14	75.1

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene066104.t1	AT3G18190	87.873	536	61	1	1	532	1	536	0.0	964
MS.gene066104.t1	AT1G24510	38.447	515	304	7	21	530	25	531	2.13e-104	323
MS.gene066104.t1	AT1G24510	37.553	474	283	7	62	530	13	478	1.79e-89	283
MS.gene066104.t1	AT1G24510	36.933	463	279	7	73	530	1	455	9.21e-84	268
MS.gene066104.t1	AT3G20050	33.898	531	323	9	18	529	13	534	9.03e-83	268
MS.gene066104.t1	AT5G20890	33.656	517	324	7	20	530	14	517	6.74e-82	265
MS.gene066104.t1	AT3G11830	32.485	511	325	7	28	529	27	526	1.74e-76	251
MS.gene066104.t1	AT3G11830	32.485	511	323	8	28	529	27	524	1.02e-74	247
MS.gene066104.t1	AT3G03960	28.817	524	357	7	14	532	17	529	1.01e-71	239
MS.gene066104.t1	AT5G26360	31.311	511	340	7	25	530	20	524	2.55e-71	238
MS.gene066104.t1	AT5G16070	29.594	517	324	13	30	520	23	525	6.90e-53	188
MS.gene066104.t1	AT3G02530	28.794	514	333	11	30	520	23	526	3.28e-51	183

Find 119 sgRNAs with CRISPR-Local

Find 146 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GGGAAGATTGTGAAGATTTC+TGG	0.204894	3.3:+88241566	MS.gene066104:CDS
TGTGAAGATTTCTGGTATTA+AGG	0.209465	3.3:+88241574	MS.gene066104:CDS
TCTTGCTAAAGCTAAGATTT+TGG	0.234466	3.3:+88241406	MS.gene066104:CDS
GATTTCTGGTATTAAGGATA+TGG	0.239423	3.3:+88241580	MS.gene066104:CDS
ATCGTCTTTGCGTTTGTTAT+CGG	0.257624	3.3:-88240526	None:intergenic
AGGGATGATTAAGAAGATTA+AGG	0.275419	3.3:+88241310	MS.gene066104:CDS
GCATTCTCAGCAAGGGTATA+TGG	0.307049	3.3:-88241839	None:intergenic
CTTGTGGAAGAGCTTTCTCT+TGG	0.336541	3.3:+88241539	MS.gene066104:CDS
TCACGGAGATCCACCATTTC+CGG	0.339036	3.3:-88241050	None:intergenic
AGCAGCGGAGTCTTGAGATT+TGG	0.347607	3.3:-88240736	None:intergenic
CTCTGTTCTATATCTGTCTT+AGG	0.348731	3.3:-88241224	None:intergenic
TGTCAAGGCAATTGGGTGCT+TGG	0.354279	3.3:+88241750	MS.gene066104:CDS
ATCGGTGTAGGATTCGGTTT+TGG	0.362816	3.3:-88240508	None:intergenic
TCTCACCGCCATGGCTGTTC+CGG	0.362983	3.3:+88240893	MS.gene066104:CDS
GATAGAGCTGTCAAGGCAAT+TGG	0.370145	3.3:+88241742	MS.gene066104:CDS
TTGTGGAAGAGCTTTCTCTT+GGG	0.371995	3.3:+88241540	MS.gene066104:CDS
ATGATGCTTTGTGTGTTGTT+AGG	0.372583	3.3:+88241672	MS.gene066104:CDS
TTTGTTATCGGTGTAGGATT+CGG	0.375261	3.3:-88240514	None:intergenic
CATACCTTTGGGGCCGAGAC+TGG	0.392090	3.3:-88240601	None:intergenic
AATCTTAGCATTCTCCATTC+TGG	0.394765	3.3:-88241174	None:intergenic
GGAGGATCGGTGAGGGGCTG+CGG	0.401126	3.3:-88240487	None:intergenic
GTCAAGGCAATTGGGTGCTT+GGG	0.415529	3.3:+88241751	MS.gene066104:CDS
CGATCCCGCTAGGCCGGAAA+TGG	0.417675	3.3:+88241037	MS.gene066104:CDS
AGAACTGAATCAACAGCAAT+AGG	0.421556	3.3:-88241005	None:intergenic
AGCTCAGTAACAATTGCAAT+CGG	0.423035	3.3:-88241872	None:intergenic
TTTGTGTGTTGTTAGGTGTT+TGG	0.427682	3.3:+88241679	MS.gene066104:CDS
AAATGCTCAATATTAGCAAT+AGG	0.434996	3.3:-88241488	None:intergenic
ATTTCTGGTATTAAGGATAT+GGG	0.441434	3.3:+88241581	MS.gene066104:CDS
TTTGCGTTTGTTATCGGTGT+AGG	0.444094	3.3:-88240520	None:intergenic
TAGCACTTCGTTGAATAGTA+AGG	0.456781	3.3:+88240953	MS.gene066104:CDS
TCACGATCAGTGAGTTCAAC+CGG	0.461390	3.3:-88240912	None:intergenic
AACGCCGTTCGCACCAGTCT+CGG	0.462746	3.3:+88240588	MS.gene066104:CDS
ACCACAACTGTGCTTGTTCG+TGG	0.463002	3.3:+88241608	MS.gene066104:CDS
TACTGAGCTTGTGAAGGGCT+TGG	0.463815	3.3:+88241112	MS.gene066104:CDS
GTGATTATTCTCAGATGGAT+AGG	0.464278	3.3:+88241258	MS.gene066104:CDS
CAAGACTCCGCTGCTGGTGA+TGG	0.468281	3.3:+88240744	MS.gene066104:CDS
ATTAAGAAGATTAAGGCAAC+CGG	0.476085	3.3:+88241317	MS.gene066104:CDS
GAATGTGGTGCAGCCATTGC+TGG	0.481414	3.3:+88241973	MS.gene066104:CDS
GAAGAGCTTTCTCTTGGGGA+TGG	0.486289	3.3:+88241545	MS.gene066104:CDS
TCCACCATTTCCGGCCTAGC+GGG	0.488011	3.3:-88241041	None:intergenic
GCAATTGGGTGCTTGGGCTA+AGG	0.488468	3.3:+88241757	MS.gene066104:CDS
AGGCAAACAATTAAGAGTCT+TGG	0.489277	3.3:-88241468	None:intergenic
TGTCTCCTCCTTCTCTCTCA+TGG	0.491398	3.3:+88240810	MS.gene066104:CDS
TGTGGAAGAGCTTTCTCTTG+GGG	0.491536	3.3:+88241541	MS.gene066104:CDS
TATACCCTTGCTGAGAATGC+AGG	0.493053	3.3:+88241842	MS.gene066104:CDS
CAGTCTCGGCCCCAAAGGTA+TGG	0.493521	3.3:+88240602	MS.gene066104:CDS
AATCAACAACACATTACAAC+CGG	0.494792	3.3:-88241336	None:intergenic
CTGAGGAATCGTCATGCTAA+AGG	0.500255	3.3:+88241893	MS.gene066104:CDS
AACGGCGTTAGCGACGGAAC+GGG	0.500736	3.3:-88240574	None:intergenic
TGTCATCGATCCCGCTAGGC+CGG	0.501041	3.3:+88241031	MS.gene066104:CDS
TCAACACTGGAATCAATGTC+AGG	0.507995	3.3:+88241921	MS.gene066104:CDS
AAATCTCAAGACTCCGCTGC+TGG	0.512750	3.3:+88240738	MS.gene066104:CDS
ATAGAGCTGTCAAGGCAATT+GGG	0.513984	3.3:+88241743	MS.gene066104:CDS
GATTGCAGGTGGTGGTGCTC+CGG	0.514051	3.3:+88241718	MS.gene066104:CDS
TGCCTTGACAGCTCTATCTC+CGG	0.516484	3.3:-88241737	None:intergenic
GTTGGTGATGATAACTTCGT+TGG	0.525584	3.3:-88240646	None:intergenic
GGAACGGGCGGCGATGATGT+TGG	0.529719	3.3:-88240559	None:intergenic
TCCCGCTAGGCCGGAAATGG+TGG	0.531201	3.3:+88241040	MS.gene066104:CDS
AAGAGCTTTCTCTTGGGGAT+GGG	0.531234	3.3:+88241546	MS.gene066104:CDS
AACTTGCATCTTGTTGAGGA+TGG	0.540091	3.3:-88240679	None:intergenic
GGTTAGTGATTATTCTCAGA+TGG	0.543811	3.3:+88241253	MS.gene066104:CDS
ACATTTCTCGAGAAGTGCTC+CGG	0.552049	3.3:-88240790	None:intergenic
CGGCGATGATGTTGGATTGA+CGG	0.559941	3.3:-88240551	None:intergenic
GATGATAACTTCGTTGGAAG+AGG	0.560445	3.3:-88240640	None:intergenic
CTCCGGAGATAGAGCTGTCA+AGG	0.563162	3.3:+88241735	MS.gene066104:CDS
GAACGGCGTTAGCGACGGAA+CGG	0.564350	3.3:-88240575	None:intergenic
GGGGCCGAGACTGGTGCGAA+CGG	0.565754	3.3:-88240592	None:intergenic
AGTGAATCAGAGATAACAGT+AGG	0.569565	3.3:-88240840	None:intergenic
AAGGTTAGTCATGCTGCTGG+TGG	0.570337	3.3:+88241146	MS.gene066104:CDS
GGCGATGACAACAACGGTGG+TGG	0.571260	3.3:-88240769	None:intergenic
CGCACCAGTCTCGGCCCCAA+AGG	0.572245	3.3:+88240597	MS.gene066104:CDS
CCTCACACACTCTGTTGCCA+AGG	0.573445	3.3:-88242014	None:intergenic
TGGAACAACTTCAAGTGCCT+CGG	0.574575	3.3:-88241819	None:intergenic
GCTCAGTAACAATTGCAATC+GGG	0.575791	3.3:-88241871	None:intergenic
TCTCTGTCATCGATCCCGCT+AGG	0.576821	3.3:+88241027	MS.gene066104:CDS
ACCACCGTTGTTGTCATCGC+CGG	0.577312	3.3:+88240771	MS.gene066104:CDS
GAAGAACTTGCATCTTGTTG+AGG	0.580248	3.3:-88240683	None:intergenic
GGCGTTAGCGACGGAACGGG+CGG	0.589560	3.3:-88240571	None:intergenic
GTTGGGTTATGCTGATCTTG+TGG	0.590393	3.3:+88241523	MS.gene066104:CDS
GGTGGTTCCATCACCAGCAG+CGG	0.591723	3.3:-88240751	None:intergenic
GAATACCATGAGAGAGAAGG+AGG	0.591885	3.3:-88240815	None:intergenic
GCACTTGTGCTAACCAGCAA+TGG	0.592202	3.3:-88241986	None:intergenic
TCAAACCTGCATTCTCAGCA+AGG	0.593910	3.3:-88241847	None:intergenic
GAGTTCAACCGGAACAGCCA+TGG	0.594130	3.3:-88240901	None:intergenic
CTGTATTCGTGCATTTGCCG+AGG	0.594695	3.3:+88241802	MS.gene066104:CDS
GGTGCGAACGGCGTTAGCGA+CGG	0.594895	3.3:-88240580	None:intergenic
TGATGATACTGAGCTTGTGA+AGG	0.595971	3.3:+88241106	MS.gene066104:CDS
TTAGCATTCTCCATTCTGGT+AGG	0.596904	3.3:-88241170	None:intergenic
ACACTCTGTTGCCAAGGTGA+TGG	0.598855	3.3:-88242008	None:intergenic
TGCTGGTGGACCTACCAGAA+TGG	0.600235	3.3:+88241160	MS.gene066104:CDS
GCTAAAGGTGAGATCAACAC+TGG	0.604820	3.3:+88241908	MS.gene066104:CDS
TGTTCTATATCTGTCTTAGG+AGG	0.605667	3.3:-88241221	None:intergenic
GGTGAATACCATGAGAGAGA+AGG	0.606764	3.3:-88240818	None:intergenic
GAGGATGGTAGCGCCGTCGT+TGG	0.607730	3.3:-88240664	None:intergenic
GATGATACTGAGCTTGTGAA+GGG	0.610892	3.3:+88241107	MS.gene066104:CDS
TTGCAATTGTTACTGAGCTG+AGG	0.612866	3.3:+88241876	MS.gene066104:CDS
TCCACGAACAAGCACAGTTG+TGG	0.612984	3.3:-88241609	None:intergenic
GCTGCACCACATTCTCCTCA+AGG	0.613760	3.3:-88241964	None:intergenic
TAGCACAAGTGCCATCACCT+TGG	0.618089	3.3:+88241997	MS.gene066104:CDS
TCAAATTACAAACATCCTTG+AGG	0.621720	3.3:+88241949	MS.gene066104:CDS
AAGAAGGTTAGTCATGCTGC+TGG	0.624743	3.3:+88241143	MS.gene066104:CDS
ACTGGAATCAATGTCAGGAA+AGG	0.625427	3.3:+88241926	MS.gene066104:CDS
AAACATCCTTGAGGAGAATG+TGG	0.628033	3.3:+88241958	MS.gene066104:CDS
TCTTAACAATCTTCACATCA+CGG	0.628490	3.3:-88241067	None:intergenic
TGTTGATGTTCTCACCGCCA+TGG	0.628840	3.3:+88240884	MS.gene066104:CDS
AACATCAACAGCTTTAACAG+AGG	0.629483	3.3:-88240871	None:intergenic
GTGAAGATTGTTAAGAAGCT+CGG	0.630785	3.3:+88241074	MS.gene066104:CDS
TTAGGTGTTTGGTTGCCAAG+AGG	0.631658	3.3:+88241690	MS.gene066104:CDS
ATCCACCATTTCCGGCCTAG+CGG	0.644279	3.3:-88241042	None:intergenic
GTGAATCAGAGATAACAGTA+GGG	0.649997	3.3:-88240839	None:intergenic
CCTTGGCAACAGAGTGTGTG+AGG	0.652881	3.3:+88242014	MS.gene066104:CDS
CAAACCTGCATTCTCAGCAA+GGG	0.653006	3.3:-88241846	None:intergenic
AGATATAGAACAGAGTATTG+TGG	0.666081	3.3:+88241232	MS.gene066104:CDS
GAAGTTATCATCACCAACGA+CGG	0.680075	3.3:+88240651	MS.gene066104:CDS
TTCAACCGGAACAGCCATGG+CGG	0.690129	3.3:-88240898	None:intergenic
AAGATTGTTAAGAAGCTCGG+TGG	0.695277	3.3:+88241077	MS.gene066104:CDS
TGCTCCGGCGATGACAACAA+CGG	0.714797	3.3:-88240775	None:intergenic
TCCGGCGATGACAACAACGG+TGG	0.732056	3.3:-88240772	None:intergenic
TTGATGATATTGTAACTGTG+AGG	0.759737	3.3:+88242050	MS.gene066104:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	AAATGCTCAATATTAGCAAT+AGG	-	chr3.3:88241491-88241510	None:intergenic	25.0%
!!!	ATTTCTGGTATTAAGGATAT+GGG	+	chr3.3:88241581-88241600	MS.gene066104:CDS	25.0%
	AATCAACAACACATTACAAC+CGG	-	chr3.3:88241339-88241358	None:intergenic	30.0%
	AGGGATGATTAAGAAGATTA+AGG	+	chr3.3:88241310-88241329	MS.gene066104:CDS	30.0%
	ATTAAGAAGATTAAGGCAAC+CGG	+	chr3.3:88241317-88241336	MS.gene066104:CDS	30.0%
	TCAAATTACAAACATCCTTG+AGG	+	chr3.3:88241949-88241968	MS.gene066104:CDS	30.0%
	TCTTAACAATCTTCACATCA+CGG	-	chr3.3:88241070-88241089	None:intergenic	30.0%
!	AAGAGAGGAGTTACATTTTA+GGG	+	chr3.3:88241291-88241310	MS.gene066104:CDS	30.0%
!	ATCATTTTGTCCATACCTTT+GGG	-	chr3.3:88240615-88240634	None:intergenic	30.0%
!	TCTTGCTAAAGCTAAGATTT+TGG	+	chr3.3:88241406-88241425	MS.gene066104:CDS	30.0%
!	TTGATGATATTGTAACTGTG+AGG	+	chr3.3:88242050-88242069	MS.gene066104:CDS	30.0%
!!	AGATATAGAACAGAGTATTG+TGG	+	chr3.3:88241232-88241251	MS.gene066104:CDS	30.0%
!!	GATTTCTGGTATTAAGGATA+TGG	+	chr3.3:88241580-88241599	MS.gene066104:CDS	30.0%
!!	TGTGAAGATTTCTGGTATTA+AGG	+	chr3.3:88241574-88241593	MS.gene066104:CDS	30.0%
	AATCTTAGCATTCTCCATTC+TGG	-	chr3.3:88241177-88241196	None:intergenic	35.0%
	AGAACTGAATCAACAGCAAT+AGG	-	chr3.3:88241008-88241027	None:intergenic	35.0%
	AGCTCAGTAACAATTGCAAT+CGG	-	chr3.3:88241875-88241894	None:intergenic	35.0%
	AGGCAAACAATTAAGAGTCT+TGG	-	chr3.3:88241471-88241490	None:intergenic	35.0%
	AGTGAATCAGAGATAACAGT+AGG	-	chr3.3:88240843-88240862	None:intergenic	35.0%
	CTCTGTTCTATATCTGTCTT+AGG	-	chr3.3:88241227-88241246	None:intergenic	35.0%
	GGTTAGTGATTATTCTCAGA+TGG	+	chr3.3:88241253-88241272	MS.gene066104:CDS	35.0%
	GTGAAGATTGTTAAGAAGCT+CGG	+	chr3.3:88241074-88241093	MS.gene066104:CDS	35.0%
	GTGAATCAGAGATAACAGTA+GGG	-	chr3.3:88240842-88240861	None:intergenic	35.0%
	GTGATTATTCTCAGATGGAT+AGG	+	chr3.3:88241258-88241277	MS.gene066104:CDS	35.0%
	TAGCACTTCGTTGAATAGTA+AGG	+	chr3.3:88240953-88240972	MS.gene066104:CDS	35.0%
	TGTTCTATATCTGTCTTAGG+AGG	-	chr3.3:88241224-88241243	None:intergenic	35.0%
!	AACATCAACAGCTTTAACAG+AGG	-	chr3.3:88240874-88240893	None:intergenic	35.0%
!	ATGATGCTTTGTGTGTTGTT+AGG	+	chr3.3:88241672-88241691	MS.gene066104:CDS	35.0%
!	GAAGAGAGGAGTTACATTTT+AGG	+	chr3.3:88241290-88241309	MS.gene066104:CDS	35.0%
!	GATCATTTTGTCCATACCTT+TGG	-	chr3.3:88240616-88240635	None:intergenic	35.0%
!	TCAGATGGATAGGATTTTGA+AGG	+	chr3.3:88241268-88241287	MS.gene066104:CDS	35.0%
!	TCATTTTGTCCATACCTTTG+GGG	-	chr3.3:88240614-88240633	None:intergenic	35.0%
!	TTTGTGTGTTGTTAGGTGTT+TGG	+	chr3.3:88241679-88241698	MS.gene066104:CDS	35.0%
!	TTTGTTATCGGTGTAGGATT+CGG	-	chr3.3:88240517-88240536	None:intergenic	35.0%
!!	ATAGGATTTTGAAGGAAGAG+AGG	+	chr3.3:88241276-88241295	MS.gene066104:CDS	35.0%
!!	ATCGTCTTTGCGTTTGTTAT+CGG	-	chr3.3:88240529-88240548	None:intergenic	35.0%
	AAACATCCTTGAGGAGAATG+TGG	+	chr3.3:88241958-88241977	MS.gene066104:CDS	40.0%
	AACTTGCATCTTGTTGAGGA+TGG	-	chr3.3:88240682-88240701	None:intergenic	40.0%
	AAGATTGTTAAGAAGCTCGG+TGG	+	chr3.3:88241077-88241096	MS.gene066104:CDS	40.0%
	ACCTGCAATCAAAAACCTCT+TGG	-	chr3.3:88241708-88241727	None:intergenic	40.0%
	ACTGGAATCAATGTCAGGAA+AGG	+	chr3.3:88241926-88241945	MS.gene066104:CDS	40.0%
	ATAGAGCTGTCAAGGCAATT+GGG	+	chr3.3:88241743-88241762	MS.gene066104:CDS	40.0%
	GAAGAACTTGCATCTTGTTG+AGG	-	chr3.3:88240686-88240705	None:intergenic	40.0%
	GAAGTTATCATCACCAACGA+CGG	+	chr3.3:88240651-88240670	MS.gene066104:CDS	40.0%
	GATGATAACTTCGTTGGAAG+AGG	-	chr3.3:88240643-88240662	None:intergenic	40.0%
	GATGATACTGAGCTTGTGAA+GGG	+	chr3.3:88241107-88241126	MS.gene066104:CDS	40.0%
	GCTCAGTAACAATTGCAATC+GGG	-	chr3.3:88241874-88241893	None:intergenic	40.0%
	GGGAAGATTGTGAAGATTTC+TGG	+	chr3.3:88241566-88241585	MS.gene066104:CDS	40.0%
	TCAACACTGGAATCAATGTC+AGG	+	chr3.3:88241921-88241940	MS.gene066104:CDS	40.0%
	TGATGATACTGAGCTTGTGA+AGG	+	chr3.3:88241106-88241125	MS.gene066104:CDS	40.0%
	TTAGCATTCTCCATTCTGGT+AGG	-	chr3.3:88241173-88241192	None:intergenic	40.0%
	TTGCAATTGTTACTGAGCTG+AGG	+	chr3.3:88241876-88241895	MS.gene066104:CDS	40.0%
	TTGTGGAAGAGCTTTCTCTT+GGG	+	chr3.3:88241540-88241559	MS.gene066104:CDS	40.0%
!	CATTTTCGTGCTGAGAAGTT+GGG	+	chr3.3:88241506-88241525	MS.gene066104:CDS	40.0%
!	GAGTTCAACGAGCATTTTAG+CGG	-	chr3.3:88240715-88240734	None:intergenic	40.0%
!!	AAGAGGTTTTTGATTGCAGG+TGG	+	chr3.3:88241707-88241726	MS.gene066104:CDS	40.0%
!!	GGGCTTGGTTTTTGATAAGA+AGG	+	chr3.3:88241127-88241146	MS.gene066104:CDS	40.0%
!!	GTTGGTGATGATAACTTCGT+TGG	-	chr3.3:88240649-88240668	None:intergenic	40.0%
!!	TTTGCGTTTGTTATCGGTGT+AGG	-	chr3.3:88240523-88240542	None:intergenic	40.0%
	AAGAGCTTTCTCTTGGGGAT+GGG	+	chr3.3:88241546-88241565	MS.gene066104:CDS	45.0%
	CAAACCTGCATTCTCAGCAA+GGG	-	chr3.3:88241849-88241868	None:intergenic	45.0%
	CTGAGGAATCGTCATGCTAA+AGG	+	chr3.3:88241893-88241912	MS.gene066104:CDS	45.0%
	CTTGTGGAAGAGCTTTCTCT+TGG	+	chr3.3:88241539-88241558	MS.gene066104:CDS	45.0%
	GAATACCATGAGAGAGAAGG+AGG	-	chr3.3:88240818-88240837	None:intergenic	45.0%
	GATAGAGCTGTCAAGGCAAT+TGG	+	chr3.3:88241742-88241761	MS.gene066104:CDS	45.0%
	GCTAAAGGTGAGATCAACAC+TGG	+	chr3.3:88241908-88241927	MS.gene066104:CDS	45.0%
	GGTGAATACCATGAGAGAGA+AGG	-	chr3.3:88240821-88240840	None:intergenic	45.0%
	GTTGGGTTATGCTGATCTTG+TGG	+	chr3.3:88241523-88241542	MS.gene066104:CDS	45.0%
	TATACCCTTGCTGAGAATGC+AGG	+	chr3.3:88241842-88241861	MS.gene066104:CDS	45.0%
	TCAAACCTGCATTCTCAGCA+AGG	-	chr3.3:88241850-88241869	None:intergenic	45.0%
	TCACGATCAGTGAGTTCAAC+CGG	-	chr3.3:88240915-88240934	None:intergenic	45.0%
	TGGAACAACTTCAAGTGCCT+CGG	-	chr3.3:88241822-88241841	None:intergenic	45.0%
	TGTGGAAGAGCTTTCTCTTG+GGG	+	chr3.3:88241541-88241560	MS.gene066104:CDS	45.0%
	TTAGGTGTTTGGTTGCCAAG+AGG	+	chr3.3:88241690-88241709	MS.gene066104:CDS	45.0%
!	AAGAAGGTTAGTCATGCTGC+TGG	+	chr3.3:88241143-88241162	MS.gene066104:CDS	45.0%
!	AAGGTTTTGCATGGGATGGA+GGG	+	chr3.3:88241776-88241795	MS.gene066104:CDS	45.0%
!	CTTGGGCTAAGGTTTTGCAT+GGG	+	chr3.3:88241768-88241787	MS.gene066104:CDS	45.0%
!	GCATTCTCAGCAAGGGTATA+TGG	-	chr3.3:88241842-88241861	None:intergenic	45.0%
!	GCATTTTCGTGCTGAGAAGT+TGG	+	chr3.3:88241505-88241524	MS.gene066104:CDS	45.0%
!	TAAGGTTTTGCATGGGATGG+AGG	+	chr3.3:88241775-88241794	MS.gene066104:CDS	45.0%
!!	ACATTTCTCGAGAAGTGCTC+CGG	-	chr3.3:88240793-88240812	None:intergenic	45.0%
!!	AGGTTTTTGATTGCAGGTGG+TGG	+	chr3.3:88241710-88241729	MS.gene066104:CDS	45.0%
!!	ATCGGTGTAGGATTCGGTTT+TGG	-	chr3.3:88240511-88240530	None:intergenic	45.0%
!!	GCCAAGAGGTTTTTGATTGC+AGG	+	chr3.3:88241704-88241723	MS.gene066104:CDS	45.0%
!!	TTCAACGAGCATTTTAGCGG+CGG	-	chr3.3:88240712-88240731	None:intergenic	45.0%
!!!	AGGATTCGGTTTTGGAGGAT+CGG	-	chr3.3:88240503-88240522	None:intergenic	45.0%
	AAATCTCAAGACTCCGCTGC+TGG	+	chr3.3:88240738-88240757	MS.gene066104:CDS	50.0%
	ACACTCTGTTGCCAAGGTGA+TGG	-	chr3.3:88242011-88242030	None:intergenic	50.0%
	ACCACAACTGTGCTTGTTCG+TGG	+	chr3.3:88241608-88241627	MS.gene066104:CDS	50.0%
	AGCAGCGGAGTCTTGAGATT+TGG	-	chr3.3:88240739-88240758	None:intergenic	50.0%
	CGGCGATGATGTTGGATTGA+CGG	-	chr3.3:88240554-88240573	None:intergenic	50.0%
	CTGTATTCGTGCATTTGCCG+AGG	+	chr3.3:88241802-88241821	MS.gene066104:CDS	50.0%
	GAAGAGCTTTCTCTTGGGGA+TGG	+	chr3.3:88241545-88241564	MS.gene066104:CDS	50.0%
	GCACTTGTGCTAACCAGCAA+TGG	-	chr3.3:88241989-88242008	None:intergenic	50.0%
	GTCAAGGCAATTGGGTGCTT+GGG	+	chr3.3:88241751-88241770	MS.gene066104:CDS	50.0%
	TACTGAGCTTGTGAAGGGCT+TGG	+	chr3.3:88241112-88241131	MS.gene066104:CDS	50.0%
	TAGCACAAGTGCCATCACCT+TGG	+	chr3.3:88241997-88242016	MS.gene066104:CDS	50.0%
	TCACGGAGATCCACCATTTC+CGG	-	chr3.3:88241053-88241072	None:intergenic	50.0%
	TCCACGAACAAGCACAGTTG+TGG	-	chr3.3:88241612-88241631	None:intergenic	50.0%
	TGCCTTGACAGCTCTATCTC+CGG	-	chr3.3:88241740-88241759	None:intergenic	50.0%
	TGTCAAGGCAATTGGGTGCT+TGG	+	chr3.3:88241750-88241769	MS.gene066104:CDS	50.0%
	TGTCTCCTCCTTCTCTCTCA+TGG	+	chr3.3:88240810-88240829	MS.gene066104:CDS	50.0%
	TGTTGATGTTCTCACCGCCA+TGG	+	chr3.3:88240884-88240903	MS.gene066104:CDS	50.0%
!	AAGGTTAGTCATGCTGCTGG+TGG	+	chr3.3:88241146-88241165	MS.gene066104:CDS	50.0%
!	GCTTGGGCTAAGGTTTTGCA+TGG	+	chr3.3:88241767-88241786	MS.gene066104:CDS	50.0%
!	GGCTAAGGTTTTGCATGGGA+TGG	+	chr3.3:88241772-88241791	MS.gene066104:CDS	50.0%
!!	GGTGTAGGATTCGGTTTTGG+AGG	-	chr3.3:88240508-88240527	None:intergenic	50.0%
!!	TCAACGAGCATTTTAGCGGC+GGG	-	chr3.3:88240711-88240730	None:intergenic	50.0%
	ACCACCGTTGTTGTCATCGC+CGG	+	chr3.3:88240771-88240790	MS.gene066104:CDS	55.0%
	ATCCACCATTTCCGGCCTAG+CGG	-	chr3.3:88241045-88241064	None:intergenic	55.0%
	CCTCACACACTCTGTTGCCA+AGG	-	chr3.3:88242017-88242036	None:intergenic	55.0%
	CCTTGGCAACAGAGTGTGTG+AGG	+	chr3.3:88242014-88242033	MS.gene066104:CDS	55.0%
	CTCCGGAGATAGAGCTGTCA+AGG	+	chr3.3:88241735-88241754	MS.gene066104:CDS	55.0%
	GAATGTGGTGCAGCCATTGC+TGG	+	chr3.3:88241973-88241992	MS.gene066104:CDS	55.0%
	GAGTTCAACCGGAACAGCCA+TGG	-	chr3.3:88240904-88240923	None:intergenic	55.0%
	GCAATTGGGTGCTTGGGCTA+AGG	+	chr3.3:88241757-88241776	MS.gene066104:CDS	55.0%
	GCTGCACCACATTCTCCTCA+AGG	-	chr3.3:88241967-88241986	None:intergenic	55.0%
	TCTCTGTCATCGATCCCGCT+AGG	+	chr3.3:88241027-88241046	MS.gene066104:CDS	55.0%
	TGCTCCGGCGATGACAACAA+CGG	-	chr3.3:88240778-88240797	None:intergenic	55.0%
	TTCAACCGGAACAGCCATGG+CGG	-	chr3.3:88240901-88240920	None:intergenic	55.0%
!	TGCTGGTGGACCTACCAGAA+TGG	+	chr3.3:88241160-88241179	MS.gene066104:CDS	55.0%
!!!	CGGTTTTGGAGGATCGGTGA+GGG	-	chr3.3:88240497-88240516	None:intergenic	55.0%
!!!	GGTTTTGGAGGATCGGTGAG+GGG	-	chr3.3:88240496-88240515	None:intergenic	55.0%
!!!	TCGGTTTTGGAGGATCGGTG+AGG	-	chr3.3:88240498-88240517	None:intergenic	55.0%
	AACGCCGTTCGCACCAGTCT+CGG	+	chr3.3:88240588-88240607	MS.gene066104:CDS	60.0%
	AACGGCGTTAGCGACGGAAC+GGG	-	chr3.3:88240577-88240596	None:intergenic	60.0%
	CAAGACTCCGCTGCTGGTGA+TGG	+	chr3.3:88240744-88240763	MS.gene066104:CDS	60.0%
	CAGTCTCGGCCCCAAAGGTA+TGG	+	chr3.3:88240602-88240621	MS.gene066104:CDS	60.0%
	GAACGGCGTTAGCGACGGAA+CGG	-	chr3.3:88240578-88240597	None:intergenic	60.0%
	GGCGATGACAACAACGGTGG+TGG	-	chr3.3:88240772-88240791	None:intergenic	60.0%
	GGTGGTTCCATCACCAGCAG+CGG	-	chr3.3:88240754-88240773	None:intergenic	60.0%
	TCCACCATTTCCGGCCTAGC+GGG	-	chr3.3:88241044-88241063	None:intergenic	60.0%
	TCCGGCGATGACAACAACGG+TGG	-	chr3.3:88240775-88240794	None:intergenic	60.0%
	TCTCACCGCCATGGCTGTTC+CGG	+	chr3.3:88240893-88240912	MS.gene066104:CDS	60.0%
	TGTCATCGATCCCGCTAGGC+CGG	+	chr3.3:88241031-88241050	MS.gene066104:CDS	60.0%
!	GATTGCAGGTGGTGGTGCTC+CGG	+	chr3.3:88241718-88241737	MS.gene066104:CDS	60.0%
!!	CATACCTTTGGGGCCGAGAC+TGG	-	chr3.3:88240604-88240623	None:intergenic	60.0%
	CGATCCCGCTAGGCCGGAAA+TGG	+	chr3.3:88241037-88241056	MS.gene066104:CDS	65.0%
	GGAACGGGCGGCGATGATGT+TGG	-	chr3.3:88240562-88240581	None:intergenic	65.0%
	GGTGCGAACGGCGTTAGCGA+CGG	-	chr3.3:88240583-88240602	None:intergenic	65.0%
	TCCCGCTAGGCCGGAAATGG+TGG	+	chr3.3:88241040-88241059	MS.gene066104:CDS	65.0%
!	GAGGATGGTAGCGCCGTCGT+TGG	-	chr3.3:88240667-88240686	None:intergenic	65.0%
	CGCACCAGTCTCGGCCCCAA+AGG	+	chr3.3:88240597-88240616	MS.gene066104:CDS	70.0%
	GGAGGATCGGTGAGGGGCTG+CGG	-	chr3.3:88240490-88240509	None:intergenic	70.0%
	GGCGTTAGCGACGGAACGGG+CGG	-	chr3.3:88240574-88240593	None:intergenic	70.0%
	GGGGCCGAGACTGGTGCGAA+CGG	-	chr3.3:88240595-88240614	None:intergenic	70.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	88240477	88242075	88240477	ID=MS.gene066104
chr3.3	mRNA	88240477	88242075	88240477	ID=MS.gene066104.t1;Parent=MS.gene066104
chr3.3	exon	88240477	88242075	88240477	ID=MS.gene066104.t1.exon1;Parent=MS.gene066104.t1
chr3.3	CDS	88240477	88242075	88240477	ID=cds.MS.gene066104.t1;Parent=MS.gene066104.t1

Gene Sequence

>MS.gene066104

ATGGCAACAACCGCAGCCCCTCACCGATCCTCCAAAACCGAATCCTACACCGATAACAAACGCAAAGACGATGTCCGTCAATCCAACATCATCGCCGCCCGTTCCGTCGCTAACGCCGTTCGCACCAGTCTCGGCCCCAAAGGTATGGACAAAATGATCTCAACCTCTTCCAACGAAGTTATCATCACCAACGACGGCGCTACCATCCTCAACAAGATGCAAGTTCTTCAACCCGCCGCTAAAATGCTCGTTGAACTCTCCAAATCTCAAGACTCCGCTGCTGGTGATGGAACCACCACCGTTGTTGTCATCGCCGGAGCACTTCTCGAGAAATGTCTCCTCCTTCTCTCTCATGGTATTCACCCTACTGTTATCTCTGATTCACTTCACAAAGCCTCTGTTAAAGCTGTTGATGTTCTCACCGCCATGGCTGTTCCGGTTGAACTCACTGATCGTGATTCACTCGTGAAATCTGCTAGCACTTCGTTGAATAGTAAGGTTGTTAGTCAATACTCTTCGCTTCTCGCTCCTATTGCTGTTGATTCAGTTCTCTCTGTCATCGATCCCGCTAGGCCGGAAATGGTGGATCTCCGTGATGTGAAGATTGTTAAGAAGCTCGGTGGAACAGTTGATGATACTGAGCTTGTGAAGGGCTTGGTTTTTGATAAGAAGGTTAGTCATGCTGCTGGTGGACCTACCAGAATGGAGAATGCTAAGATTGCTGTGATTCAGTTTCAAATTTCGCCTCCTAAGACAGATATAGAACAGAGTATTGTGGTTAGTGATTATTCTCAGATGGATAGGATTTTGAAGGAAGAGAGGAGTTACATTTTAGGGATGATTAAGAAGATTAAGGCAACCGGTTGTAATGTGTTGTTGATTCAGAAGAGTATTTTGAGAGATGCTGTTACTGATTTGTCTTTGCATTATCTTGCTAAAGCTAAGATTTTGGTGATTAAAGATGTTGAGCGTGACGAGATTGAGTTCATTACCAAGACTCTTAATTGTTTGCCTATTGCTAATATTGAGCATTTTCGTGCTGAGAAGTTGGGTTATGCTGATCTTGTGGAAGAGCTTTCTCTTGGGGATGGGAAGATTGTGAAGATTTCTGGTATTAAGGATATGGGAAAGACCACAACTGTGCTTGTTCGTGGATCTAATTTGCTTGTGCTCGATGAAGCTGAGCGAAGTCTGCATGATGCTTTGTGTGTTGTTAGGTGTTTGGTTGCCAAGAGGTTTTTGATTGCAGGTGGTGGTGCTCCGGAGATAGAGCTGTCAAGGCAATTGGGTGCTTGGGCTAAGGTTTTGCATGGGATGGAGGGTTACTGTATTCGTGCATTTGCCGAGGCACTTGAAGTTGTTCCATATACCCTTGCTGAGAATGCAGGTTTGAACCCGATTGCAATTGTTACTGAGCTGAGGAATCGTCATGCTAAAGGTGAGATCAACACTGGAATCAATGTCAGGAAAGGTCAAATTACAAACATCCTTGAGGAGAATGTGGTGCAGCCATTGCTGGTTAGCACAAGTGCCATCACCTTGGCAACAGAGTGTGTGAGGATGATTTTGAAGATTGATGATATTGTAACTGTGAGGTAG

Protein sequence

>MS.gene066104.t1

MATTAAPHRSSKTESYTDNKRKDDVRQSNIIAARSVANAVRTSLGPKGMDKMISTSSNEVIITNDGATILNKMQVLQPAAKMLVELSKSQDSAAGDGTTTVVVIAGALLEKCLLLLSHGIHPTVISDSLHKASVKAVDVLTAMAVPVELTDRDSLVKSASTSLNSKVVSQYSSLLAPIAVDSVLSVIDPARPEMVDLRDVKIVKKLGGTVDDTELVKGLVFDKKVSHAAGGPTRMENAKIAVIQFQISPPKTDIEQSIVVSDYSQMDRILKEERSYILGMIKKIKATGCNVLLIQKSILRDAVTDLSLHYLAKAKILVIKDVERDEIEFITKTLNCLPIANIEHFRAEKLGYADLVEELSLGDGKIVKISGIKDMGKTTTVLVRGSNLLVLDEAERSLHDALCVVRCLVAKRFLIAGGGAPEIELSRQLGAWAKVLHGMEGYCIRAFAEALEVVPYTLAENAGLNPIAIVTELRNRHAKGEINTGINVRKGQITNILEENVVQPLLVSTSAITLATECVRMILKIDDIVTVR