AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene066125

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066125.t1 MTR_1g056910 96.798 406 13 0 1 406 1 406 0.0 811
MS.gene066125.t1 MTR_4g051515 45.432 405 212 7 1 398 1 403 3.38e-112 335
MS.gene066125.t1 MTR_7g106340 43.165 417 220 7 2 405 4 416 1.29e-108 326
MS.gene066125.t1 MTR_1g056880 40.421 428 219 8 3 399 4 426 7.10e-102 309
MS.gene066125.t1 MTR_1g056870 39.953 428 221 8 3 399 4 426 4.41e-99 302
MS.gene066125.t1 MTR_2g087350 44.938 405 207 9 1 399 1 395 1.35e-97 297
MS.gene066125.t1 MTR_1g056840 37.383 428 206 10 3 399 4 400 3.04e-86 268
MS.gene066125.t1 MTR_5g077510 32.057 418 251 12 3 403 32 433 3.47e-52 181
MS.gene066125.t1 MTR_3g065080 31.500 400 246 13 1 386 31 416 1.58e-43 157
MS.gene066125.t1 MTR_6g071340 30.446 404 250 11 3 386 2 394 3.34e-41 150
MS.gene066125.t1 MTR_5g048050 29.950 404 252 11 3 386 22 414 1.61e-40 149
MS.gene066125.t1 MTR_4g085720 30.203 394 258 11 4 392 12 393 6.90e-39 144
MS.gene066125.t1 MTR_8g092870 27.805 410 258 13 4 390 8 402 2.57e-26 110
MS.gene066125.t1 MTR_3g095730 24.878 410 268 12 4 390 11 403 3.83e-23 100
MS.gene066125.t1 MTR_5g015210 26.735 389 253 14 5 386 66 429 5.68e-23 100
MS.gene066125.t1 MTR_3g096370 28.726 369 229 14 3 352 7 360 7.44e-22 97.1
MS.gene066125.t1 MTR_4g091880 27.826 345 189 11 6 343 5 296 2.16e-20 92.0
MS.gene066125.t1 MTR_5g083030 26.099 364 208 13 1 328 288 626 5.61e-20 92.8
MS.gene066125.t1 MTR_1g017770 28.235 425 233 17 1 395 39 421 4.19e-19 89.0
MS.gene066125.t1 MTR_4g485520 26.203 374 218 14 2 371 101 420 4.41e-19 89.4
MS.gene066125.t1 MTR_4g485520 26.203 374 218 14 2 371 269 588 6.24e-19 89.4
MS.gene066125.t1 MTR_4g063800 38.889 144 72 5 6 137 255 394 1.89e-18 87.8
MS.gene066125.t1 MTR_7g078330 37.226 137 77 5 6 136 274 407 2.77e-18 87.4
MS.gene066125.t1 MTR_4g091880 26.648 349 216 10 6 343 5 324 1.93e-17 83.6
MS.gene066125.t1 MTR_3g085610 48.837 86 36 3 7 92 281 358 3.30e-17 84.3
MS.gene066125.t1 MTR_4g107010 26.625 323 195 13 7 307 281 583 7.94e-17 83.2
MS.gene066125.t1 MTR_2g011140 29.670 273 168 11 8 274 17 271 1.58e-16 80.9
MS.gene066125.t1 MTR_7g059405 27.326 344 221 12 6 340 264 587 1.73e-16 82.0
MS.gene066125.t1 MTR_2g018010 34.211 152 78 6 4 137 290 437 1.02e-15 79.7
MS.gene066125.t1 MTR_8g080280 25.060 415 228 16 7 355 283 680 1.65e-15 79.0
MS.gene066125.t1 MTR_1g090320 50.000 76 37 1 7 82 514 588 4.50e-15 77.8
MS.gene066125.t1 MTR_1g090320 50.000 76 37 1 7 82 516 590 4.71e-15 77.8
MS.gene066125.t1 MTR_4g028960 48.000 75 37 2 3 77 277 349 8.53e-15 76.6
MS.gene066125.t1 MTR_5g034440 54.286 70 30 2 10 79 284 351 1.09e-14 76.3
MS.gene066125.t1 MTR_3g078160 29.183 257 122 11 7 211 276 524 3.80e-14 74.7
MS.gene066125.t1 MTR_1g037070 45.122 82 44 1 269 350 1 81 5.01e-14 67.8
MS.gene066125.t1 MTR_3g078160 29.183 257 122 11 7 211 276 524 5.02e-14 74.3
MS.gene066125.t1 MTR_7g116600 36.054 147 73 6 2 136 74 211 6.45e-14 73.6
MS.gene066125.t1 MTR_3g078160 29.070 258 123 11 6 211 275 524 9.69e-14 73.2
MS.gene066125.t1 MTR_8g103227 45.946 74 39 1 7 80 396 468 4.21e-13 71.6
MS.gene066125.t1 MTR_1g069845 44.444 72 38 2 4 75 122 191 4.34e-13 71.2
MS.gene066125.t1 MTR_7g097020 44.000 75 40 2 4 78 239 311 5.27e-13 71.2
MS.gene066125.t1 MTR_1g069845 44.444 72 38 2 4 75 243 312 6.53e-13 70.9
MS.gene066125.t1 MTR_1g069845 44.444 72 38 2 4 75 239 308 6.99e-13 70.9
MS.gene066125.t1 MTR_6g462610 32.298 161 95 4 121 277 7 157 1.17e-12 66.2
MS.gene066125.t1 MTR_7g053260 45.070 71 37 2 4 74 76 144 2.13e-12 68.9
MS.gene066125.t1 MTR_5g020570 40.909 88 46 4 2 89 269 350 8.61e-12 67.4
MS.gene066125.t1 MTR_3g466220 42.667 75 41 2 4 78 231 303 9.66e-12 67.4
MS.gene066125.t1 MTR_5g020570 40.909 88 46 4 2 89 284 365 9.91e-12 67.4
MS.gene066125.t1 MTR_3g466220 42.667 75 41 2 4 78 210 282 1.04e-11 67.4
MS.gene066125.t1 MTR_3g115670 27.222 180 109 5 10 185 34 195 1.84e-11 66.6
MS.gene066125.t1 MTR_8g077205 39.560 91 49 3 7 97 164 248 3.32e-11 65.5
MS.gene066125.t1 MTR_8g077205 42.169 83 42 3 7 89 276 352 3.92e-11 65.5
MS.gene066125.t1 MTR_1g094215 35.915 142 79 4 6 137 247 386 7.91e-11 64.3
MS.gene066125.t1 MTR_1g094215 34.507 142 81 4 6 137 64 203 8.09e-11 63.9
MS.gene066125.t1 MTR_7g117890 33.577 137 74 6 4 138 253 374 8.24e-11 64.3
MS.gene066125.t1 MTR_2g096850 45.205 73 38 2 2 74 585 655 9.01e-11 64.3
MS.gene066125.t1 MTR_2g096850 45.205 73 38 2 2 74 736 806 9.90e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene066125.t1 AT3G11840 41.667 444 211 6 2 403 6 443 1.40e-114 342
MS.gene066125.t1 AT2G35930 43.066 411 217 9 2 405 8 408 2.95e-104 315
MS.gene066125.t1 AT3G52450 38.813 438 226 12 1 404 1 430 2.90e-91 282
MS.gene066125.t1 AT3G19380 29.787 423 255 11 4 405 12 413 3.89e-46 164
MS.gene066125.t1 AT1G49780 30.370 405 256 12 4 394 12 404 2.08e-40 149
MS.gene066125.t1 AT5G37490 27.404 416 236 14 3 386 28 409 5.58e-33 129
MS.gene066125.t1 AT1G66160 27.518 407 252 13 3 393 30 409 5.83e-33 129
MS.gene066125.t1 AT3G18710 29.073 399 252 13 4 386 10 393 3.46e-30 120
MS.gene066125.t1 AT1G66160 25.307 407 245 14 3 393 30 393 1.06e-22 99.8
MS.gene066125.t1 AT5G09800 23.951 405 264 13 6 389 11 392 1.99e-21 95.9
MS.gene066125.t1 AT5G64660 24.703 421 257 14 4 389 8 403 5.05e-21 94.7
MS.gene066125.t1 AT3G49810 26.044 407 241 12 1 386 59 426 5.06e-19 89.0
MS.gene066125.t1 AT5G65920 25.248 404 258 14 5 395 59 431 3.03e-18 86.7
MS.gene066125.t1 AT5G65920 25.248 404 258 14 5 395 59 431 3.03e-18 86.7
MS.gene066125.t1 AT1G29340 28.667 300 167 12 4 278 303 580 2.81e-17 84.3
MS.gene066125.t1 AT3G46510 35.135 148 72 4 6 137 256 395 3.45e-17 84.0
MS.gene066125.t1 AT3G54850 51.351 74 34 2 6 79 248 319 5.01e-17 83.6
MS.gene066125.t1 AT1G67530 49.412 85 37 3 7 91 273 351 1.17e-16 82.4
MS.gene066125.t1 AT1G67530 49.412 85 37 3 7 91 273 351 1.48e-16 82.4
MS.gene066125.t1 AT1G67530 49.412 85 37 3 7 91 273 351 1.48e-16 82.4
MS.gene066125.t1 AT1G67530 49.412 85 37 3 7 91 273 351 1.48e-16 82.4
MS.gene066125.t1 AT4G21350 23.632 402 240 11 5 382 4 362 1.60e-16 80.9
MS.gene066125.t1 AT1G71020 48.684 76 37 2 2 77 91 164 2.06e-16 81.3
MS.gene066125.t1 AT1G71020 48.052 77 38 2 2 78 239 313 3.14e-16 81.3
MS.gene066125.t1 AT1G24330 27.361 413 224 19 7 355 276 676 3.84e-16 80.9
MS.gene066125.t1 AT1G24330 27.361 413 224 19 7 355 276 676 3.84e-16 80.9
MS.gene066125.t1 AT1G23030 48.684 76 37 2 2 77 237 310 4.03e-16 80.9
MS.gene066125.t1 AT5G42340 27.106 273 181 8 6 275 290 547 5.73e-16 80.5
MS.gene066125.t1 AT2G28830 45.349 86 39 3 7 92 185 262 1.84e-14 75.5
MS.gene066125.t1 AT3G07360 43.038 79 43 2 1 79 69 145 1.91e-14 75.1
MS.gene066125.t1 AT5G01830 32.051 156 96 5 1 148 269 422 5.91e-14 74.3
MS.gene066125.t1 AT1G01660 43.836 73 39 2 7 79 499 569 1.03e-13 73.2
MS.gene066125.t1 AT1G01660 43.836 73 39 2 7 79 498 568 1.07e-13 73.2
MS.gene066125.t1 AT1G27910 49.315 73 35 2 7 79 280 350 1.15e-13 73.2
MS.gene066125.t1 AT2G45920 45.455 77 40 2 5 81 324 398 2.15e-13 71.6
MS.gene066125.t1 AT3G54790 44.000 75 40 2 4 78 200 272 3.43e-12 68.6
MS.gene066125.t1 AT3G54790 44.000 75 40 2 4 78 236 308 4.15e-12 68.6
MS.gene066125.t1 AT3G54790 44.000 75 40 2 4 78 236 308 4.15e-12 68.6
MS.gene066125.t1 AT3G61390 47.143 70 35 2 5 74 277 344 4.95e-12 67.4
MS.gene066125.t1 AT5G65500 42.500 80 42 3 2 80 711 787 4.96e-12 68.2
MS.gene066125.t1 AT5G65500 42.500 80 42 3 2 80 719 795 5.07e-12 68.2
MS.gene066125.t1 AT3G61390 47.143 70 35 2 5 74 352 419 6.55e-12 67.4
MS.gene066125.t1 AT5G57035 42.466 73 40 2 6 78 708 778 7.19e-12 67.8
MS.gene066125.t1 AT1G60190 32.867 143 80 6 12 142 284 422 1.26e-11 67.0
MS.gene066125.t1 AT1G01680 43.478 69 37 2 10 78 237 303 2.80e-11 64.7
MS.gene066125.t1 AT5G51270 43.056 72 38 2 7 78 736 804 4.32e-11 65.5
MS.gene066125.t1 AT5G51270 43.056 72 38 2 7 78 736 804 4.32e-11 65.5
MS.gene066125.t1 AT1G20780 27.869 183 108 7 8 185 25 188 5.52e-11 65.1
MS.gene066125.t1 AT1G20780 27.869 183 108 7 8 185 25 188 5.52e-11 65.1
MS.gene066125.t1 AT1G20780 27.869 183 108 7 8 185 25 188 5.52e-11 65.1

Find 47 sgRNAs with CRISPR-Local

Find 62 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAACAGGATCTTTCATTATT+TGG 0.118442 1.4:+47246064 None:intergenic
TTCATTATTTGGAGTGATAT+TGG 0.189499 1.4:+47246075 None:intergenic
CACAATTCTTTCGAAGAATT+CGG 0.199521 1.4:+47245429 None:intergenic
ACTAATAGAGATTGAATTAA+TGG 0.226085 1.4:-47245284 MS.gene066125:CDS
TGATTCCTTTGAGAAGCTTT+TGG 0.238517 1.4:+47245818 None:intergenic
TAAAGTGATGGAAATATTTA+AGG 0.243590 1.4:-47244975 MS.gene066125:CDS
TTTACTATGTTGTTGTCCTT+TGG 0.288354 1.4:-47245350 MS.gene066125:CDS
TTACTATGTTGTTGTCCTTT+GGG 0.311153 1.4:-47245349 MS.gene066125:CDS
TTCTGCTACAAAGATGGTTT+TGG 0.311443 1.4:-47245074 MS.gene066125:CDS
TCATTATTTGGAGTGATATT+GGG 0.316730 1.4:+47246076 None:intergenic
ATTCCTGTTATAGCAGTAAC+AGG 0.346346 1.4:+47246048 None:intergenic
GTTGTCCTTTGGGAAGAAAT+AGG 0.365624 1.4:-47245339 MS.gene066125:CDS
TTAAGGCTCATTCTGAGGTT+TGG 0.366681 1.4:-47244958 MS.gene066125:CDS
GATCCTGTTACTGCTATAAC+AGG 0.386049 1.4:-47246051 MS.gene066125:CDS
GTTGACTGAGAGATTCTTCA+AGG 0.402733 1.4:-47245152 MS.gene066125:CDS
TTGGATGAGATGTTAAAAGT+TGG 0.415505 1.4:-47245055 MS.gene066125:CDS
GGTGTTAAATCAGAATCTAA+TGG 0.418840 1.4:+47245946 None:intergenic
GCTCAAGAGTTTAATGCAGT+TGG 0.418910 1.4:-47245779 MS.gene066125:CDS
ATTGTGAAAGTTCTAAGAAA+TGG 0.433892 1.4:-47245412 MS.gene066125:CDS
ACAATTCTTTCGAAGAATTC+GGG 0.437523 1.4:+47245430 None:intergenic
CATTTGTGTTCTTGTGCAAA+TGG 0.445659 1.4:-47245214 MS.gene066125:CDS
AAACTCTTGAGCTGAACCTT+AGG 0.446427 1.4:+47245790 None:intergenic
GGGAAGAAATAGGTTAATGA+TGG 0.446476 1.4:-47245329 MS.gene066125:CDS
ATGAACATAATCATCTCTTT+CGG 0.450958 1.4:+47245700 None:intergenic
TTCGTCGTTTGATTCAATCT+TGG 0.454949 1.4:-47245912 MS.gene066125:CDS
AGAATCACAGAACTCACATT+TGG 0.479777 1.4:-47245247 MS.gene066125:CDS
GAAGGTATTGAAGAAGCTCT+TGG 0.482882 1.4:-47245646 MS.gene066125:CDS
CAAAGGAATCAAAGATCCTA+AGG 0.507179 1.4:-47245806 MS.gene066125:CDS
AGAGATGTTTGAGGAAAACA+AGG 0.510086 1.4:+47244926 None:intergenic
AGATTCTTCACTTCTTCTGT+AGG 0.513088 1.4:+47245601 None:intergenic
AAACGACGAAGTGTGTGATT+TGG 0.523610 1.4:+47245925 None:intergenic
GGAAGAGGTTGTTGTGTGAC+AGG 0.532069 1.4:+47245967 None:intergenic
TGCACACAAAATGCTTCACT+TGG 0.539364 1.4:-47245889 MS.gene066125:CDS
AATATTTAAGGCTCATTCTG+AGG 0.547702 1.4:-47244963 MS.gene066125:CDS
AAATCAGAATCTAATGGAAG+AGG 0.553606 1.4:+47245952 None:intergenic
AAATACTTGATTCTTTAACA+TGG 0.554270 1.4:-47245561 MS.gene066125:CDS
CTTCAAGGTTTCAATGACAG+TGG 0.556204 1.4:-47245137 MS.gene066125:CDS
CTAGCATAGAGAGATGTTTG+AGG 0.570126 1.4:+47244917 None:intergenic
CTCAAACATCTCTCTATGCT+AGG 0.570560 1.4:-47244916 MS.gene066125:CDS
ATTAACCTATTTCTTCCCAA+AGG 0.586930 1.4:+47245334 None:intergenic
ATCGAGACAGCATTGAACAT+TGG 0.589905 1.4:-47246017 MS.gene066125:CDS
CAAGTCCAAAAGCTTCTCAA+AGG 0.606638 1.4:-47245823 MS.gene066125:CDS
ATTGGGCAAATGAAGTATTG+TGG 0.626661 1.4:+47246093 None:intergenic
AGGTTAATGATGGTTGAAGC+TGG 0.636668 1.4:-47245319 MS.gene066125:CDS
GTATTTGAAAGATAAAGTGA+TGG 0.642403 1.4:-47244987 MS.gene066125:CDS
AATGGTGTAATAACACAACA+AGG 0.719258 1.4:-47245394 MS.gene066125:CDS
GGTTACTGTGAAATCGCACG+CGG 0.746028 1.4:-47245512 MS.gene066125:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATACTTGATTCTTTAACA+TGG - chr1.4:47245463-47245482 MS.gene066125:CDS 20.0%
!! ACTAATAGAGATTGAATTAA+TGG - chr1.4:47245740-47245759 MS.gene066125:CDS 20.0%
!! ATAGTTGATTGTTACAAAAA+AGG - chr1.4:47245345-47245364 MS.gene066125:CDS 20.0%
!!! TAAAGTGATGGAAATATTTA+AGG - chr1.4:47246049-47246068 MS.gene066125:CDS 20.0%
!!! TGGTTTTTTACAATTTGTTA+AGG - chr1.4:47245398-47245417 MS.gene066125:CDS 20.0%
! AAAAAAGGCGAAATTTATGA+AGG - chr1.4:47245360-47245379 MS.gene066125:CDS 25.0%
! ATGAACATAATCATCTCTTT+CGG + chr1.4:47245327-47245346 None:intergenic 25.0%
! GTATTTGAAAGATAAAGTGA+TGG - chr1.4:47246037-47246056 MS.gene066125:CDS 25.0%
! TAACAGGATCTTTCATTATT+TGG + chr1.4:47244963-47244982 None:intergenic 25.0%
!! AGAAAGATTTTGTTGGAAAA+TGG - chr1.4:47245297-47245316 MS.gene066125:CDS 25.0%
!! TAAATTTTCTGCTACAAAGA+TGG - chr1.4:47245944-47245963 MS.gene066125:CDS 25.0%
!! TCATTATTTGGAGTGATATT+GGG + chr1.4:47244951-47244970 None:intergenic 25.0%
!! TTCATTATTTGGAGTGATAT+TGG + chr1.4:47244952-47244971 None:intergenic 25.0%
!!! ATTGTGAAAGTTCTAAGAAA+TGG - chr1.4:47245612-47245631 MS.gene066125:CDS 25.0%
AAATCAGAATCTAATGGAAG+AGG + chr1.4:47245075-47245094 None:intergenic 30.0%
AATGGTGTAATAACACAACA+AGG - chr1.4:47245630-47245649 MS.gene066125:CDS 30.0%
ACAATTCTTTCGAAGAATTC+GGG + chr1.4:47245597-47245616 None:intergenic 30.0%
CACAATTCTTTCGAAGAATT+CGG + chr1.4:47245598-47245617 None:intergenic 30.0%
GGTGTTAAATCAGAATCTAA+TGG + chr1.4:47245081-47245100 None:intergenic 30.0%
TTACTATGTTGTTGTCCTTT+GGG - chr1.4:47245675-47245694 MS.gene066125:CDS 30.0%
TTGGATGAGATGTTAAAAGT+TGG - chr1.4:47245969-47245988 MS.gene066125:CDS 30.0%
TTTACTATGTTGTTGTCCTT+TGG - chr1.4:47245674-47245693 MS.gene066125:CDS 30.0%
! AATATTTAAGGCTCATTCTG+AGG - chr1.4:47246061-47246080 MS.gene066125:CDS 30.0%
! ATTAACCTATTTCTTCCCAA+AGG + chr1.4:47245693-47245712 None:intergenic 30.0%
! GAGCAATAGAAAGATTTTGT+TGG - chr1.4:47245290-47245309 MS.gene066125:CDS 30.0%
!!! TTTCAGTTTTTGAGTCATCA+AGG - chr1.4:47245837-47245856 MS.gene066125:CDS 30.0%
AGAATCACAGAACTCACATT+TGG - chr1.4:47245777-47245796 MS.gene066125:CDS 35.0%
AGAGATGTTTGAGGAAAACA+AGG + chr1.4:47246101-47246120 None:intergenic 35.0%
AGATTCTTCACTTCTTCTGT+AGG + chr1.4:47245426-47245445 None:intergenic 35.0%
AGTTTCCGAGATGAAAAACT+CGG - chr1.4:47245491-47245510 MS.gene066125:CDS 35.0%
ATTCCTGTTATAGCAGTAAC+AGG + chr1.4:47244979-47244998 None:intergenic 35.0%
CAAAGGAATCAAAGATCCTA+AGG - chr1.4:47245218-47245237 MS.gene066125:CDS 35.0%
CATTTGTGTTCTTGTGCAAA+TGG - chr1.4:47245810-47245829 MS.gene066125:CDS 35.0%
GGGAAGAAATAGGTTAATGA+TGG - chr1.4:47245695-47245714 MS.gene066125:CDS 35.0%
TTCGTCGTTTGATTCAATCT+TGG - chr1.4:47245112-47245131 MS.gene066125:CDS 35.0%
! ACTTGAATTTTTGTGAGTGG+TGG + chr1.4:47245186-47245205 None:intergenic 35.0%
! AGTAACCGAGTTTTTCATCT+CGG + chr1.4:47245499-47245518 None:intergenic 35.0%
! ATTTTTGTGAGTGGTGGTTT+TGG + chr1.4:47245180-47245199 None:intergenic 35.0%
! TGGACTTGAATTTTTGTGAG+TGG + chr1.4:47245189-47245208 None:intergenic 35.0%
! TTCTGCTACAAAGATGGTTT+TGG - chr1.4:47245950-47245969 MS.gene066125:CDS 35.0%
!! ATTGGGCAAATGAAGTATTG+TGG + chr1.4:47244934-47244953 None:intergenic 35.0%
!! TGATTCCTTTGAGAAGCTTT+TGG + chr1.4:47245209-47245228 None:intergenic 35.0%
AAACGACGAAGTGTGTGATT+TGG + chr1.4:47245102-47245121 None:intergenic 40.0%
AAACTCTTGAGCTGAACCTT+AGG + chr1.4:47245237-47245256 None:intergenic 40.0%
AGGTTAATGATGGTTGAAGC+TGG - chr1.4:47245705-47245724 MS.gene066125:CDS 40.0%
CAAGTCCAAAAGCTTCTCAA+AGG - chr1.4:47245201-47245220 MS.gene066125:CDS 40.0%
CTAGCATAGAGAGATGTTTG+AGG + chr1.4:47246110-47246129 None:intergenic 40.0%
CTCAAACATCTCTCTATGCT+AGG - chr1.4:47246108-47246127 MS.gene066125:CDS 40.0%
CTTCAAGGTTTCAATGACAG+TGG - chr1.4:47245887-47245906 MS.gene066125:CDS 40.0%
GATCCTGTTACTGCTATAAC+AGG - chr1.4:47244973-47244992 MS.gene066125:CDS 40.0%
GCTCAAGAGTTTAATGCAGT+TGG - chr1.4:47245245-47245264 MS.gene066125:CDS 40.0%
GTTGACTGAGAGATTCTTCA+AGG - chr1.4:47245872-47245891 MS.gene066125:CDS 40.0%
TGCACACAAAATGCTTCACT+TGG - chr1.4:47245135-47245154 MS.gene066125:CDS 40.0%
! ATCGAGACAGCATTGAACAT+TGG - chr1.4:47245007-47245026 MS.gene066125:CDS 40.0%
! GTTGTCCTTTGGGAAGAAAT+AGG - chr1.4:47245685-47245704 MS.gene066125:CDS 40.0%
!! GAAGGTATTGAAGAAGCTCT+TGG - chr1.4:47245378-47245397 MS.gene066125:CDS 40.0%
!! TTAAGGCTCATTCTGAGGTT+TGG - chr1.4:47246066-47246085 MS.gene066125:CDS 40.0%
!!! GCGATTCAATCGTTTTAGAG+AGG - chr1.4:47245565-47245584 MS.gene066125:CDS 40.0%
!!! TGAGTGGTGGTTTTGGTGTT+GGG + chr1.4:47245173-47245192 None:intergenic 45.0%
GGAAGAGGTTGTTGTGTGAC+AGG + chr1.4:47245060-47245079 None:intergenic 50.0%
GGTTACTGTGAAATCGCACG+CGG - chr1.4:47245512-47245531 MS.gene066125:CDS 50.0%
!!! GTGAGTGGTGGTTTTGGTGT+TGG + chr1.4:47245174-47245193 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr1.4 gene 47244913 47246133 47244913 ID=MS.gene066125
chr1.4 mRNA 47244913 47246133 47244913 ID=MS.gene066125.t1;Parent=MS.gene066125
chr1.4 exon 47244913 47246133 47244913 ID=MS.gene066125.t1.exon1;Parent=MS.gene066125.t1
chr1.4 CDS 47244913 47246133 47244913 ID=cds.MS.gene066125.t1;Parent=MS.gene066125.t1
Gene Sequence

>MS.gene066125

ATGGATGAAATTGAAGTTCCACAATACTTCATTTGCCCAATATCACTCCAAATAATGAAAGATCCTGTTACTGCTATAACAGGAATAACATATGATCGAGACAGCATTGAACATTGGTTATTCACAAACAAGAACACAACATGTCCTGTCACACAACAACCTCTTCCATTAGATTCTGATTTAACACCAAATCACACACTTCGTCGTTTGATTCAATCTTGGTGCACACAAAATGCTTCACTTGGTATTGATAGAATCCCAACACCAAAACCACCACTCACAAAAATTCAAGTCCAAAAGCTTCTCAAAGGAATCAAAGATCCTAAGGTTCAGCTCAAGAGTTTAATGCAGTTGGAATTGCTTGCTGCTGAGAAAGAGAGCAATAGAAAGATTTTGTTGGAAAATGGTGTGCCGAAAGAGATGATTATGTTCATAGTTGATTGTTACAAAAAAGGCGAAATTTATGAAGGTATTGAAGAAGCTCTTGGTTTTTTACAATTTGTTAAGGTTCCTACAGAAGAAGTGAAGAATCTTCTATTTGAAAATAATCAAATACTTGATTCTTTAACATGGATTTTAGTTTCCGAGATGAAAAACTCGGTTACTGTGAAATCGCACGCGGTTTTAGTGCTTAAAAAATTCATAAACAAATGCGATTCAATCGTTTTAGAGAGGCTAAAACCCGAATTCTTCGAAAGAATTGTGAAAGTTCTAAGAAATGGTGTAATAACACAACAAGGTTTGTCTTCTGCTTTACATATTTTACTATGTTGTTGTCCTTTGGGAAGAAATAGGTTAATGATGGTTGAAGCTGGTGCAATTCATGAACTAATAGAGATTGAATTAATGGCAATACATGAAAAGAGAATCACAGAACTCACATTTGGTATATTGTTTCATTTGTGTTCTTGTGCAAATGGAAGATTTCAGTTTTTGAGTCATCAAGGTTCAATTGCAATGTTGACTGAGAGATTCTTCAAGGTTTCAATGACAGTGGATGATAGAGCTGTTTTTATACTCTCATTGATATCTAAATTTTCTGCTACAAAGATGGTTTTGGATGAGATGTTAAAAGTTGGAACTGTTGCAAAGCTTTTTGTTTTGCTTCAAAGTGATCATGCTAAGTATTTGAAAGATAAAGTGATGGAAATATTTAAGGCTCATTCTGAGGTTTGGAAGAATTCTCCTTGTTTTCCTCAAACATCTCTCTATGCTAGGTGA
Protein sequence

>MS.gene066125.t1

MDEIEVPQYFICPISLQIMKDPVTAITGITYDRDSIEHWLFTNKNTTCPVTQQPLPLDSDLTPNHTLRRLIQSWCTQNASLGIDRIPTPKPPLTKIQVQKLLKGIKDPKVQLKSLMQLELLAAEKESNRKILLENGVPKEMIMFIVDCYKKGEIYEGIEEALGFLQFVKVPTEEVKNLLFENNQILDSLTWILVSEMKNSVTVKSHAVLVLKKFINKCDSIVLERLKPEFFERIVKVLRNGVITQQGLSSALHILLCCCPLGRNRLMMVEAGAIHELIEIELMAIHEKRITELTFGILFHLCSCANGRFQFLSHQGSIAMLTERFFKVSMTVDDRAVFILSLISKFSATKMVLDEMLKVGTVAKLFVLLQSDHAKYLKDKVMEIFKAHSEVWKNSPCFPQTSLYAR