Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043455.t1 | XP_013465148.1 | 92.8 | 276 | 3 | 2 | 1 | 276 | 1 | 259 | 4.20E-106 | 394.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043455.t1 | Q9XFD1 | 77.0 | 200 | 29 | 2 | 1 | 198 | 1 | 185 | 4.2e-86 | 319.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043455.t1 | A0A072VCJ4 | 92.8 | 276 | 3 | 2 | 1 | 276 | 1 | 259 | 3.1e-106 | 394.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043455.t1 | MTR_2g090655 | 92.754 | 276 | 3 | 2 | 1 | 276 | 1 | 259 | 0.0 | 508 |
MS.gene043455.t1 | MTR_2g096560 | 39.744 | 78 | 47 | 0 | 31 | 108 | 4 | 81 | 4.13e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043455.t1 | AT5G44200 | 72.662 | 278 | 51 | 3 | 1 | 275 | 1 | 256 | 1.19e-125 | 358 |
MS.gene043455.t1 | AT5G44200 | 72.662 | 278 | 51 | 3 | 1 | 275 | 1 | 256 | 1.19e-125 | 358 |
Find 71 sgRNAs with CRISPR-Local
Find 237 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGACTACGGCACTGGTTCTT+TGG | 0.264253 | 2.2:-8794709 | MS.gene043455:CDS |
TCAAATTCTTCTTGATTTCC+AGG | 0.295016 | 2.2:+8796987 | None:intergenic |
TAAGAAGATTATCATGGGTT+TGG | 0.309907 | 2.2:-8796865 | MS.gene043455:CDS |
AAAATAGTTAAAAGGATATC+TGG | 0.325214 | 2.2:+8795057 | None:intergenic |
GCAAAAGCCACAAGGAGTTT+TGG | 0.329960 | 2.2:+8796833 | None:intergenic |
TACATACGTAGGGGTGGATA+TGG | 0.332561 | 2.2:-8794774 | MS.gene043455:intron |
GACTACGGCACTGGTTCTTT+GGG | 0.344926 | 2.2:-8794708 | MS.gene043455:CDS |
TTACAAGAAGATGGAATAAC+TGG | 0.359475 | 2.2:+8794675 | None:intergenic |
CAGTCAAAATCAACACGAAT+AGG | 0.364148 | 2.2:+8795872 | None:intergenic |
GGTCAGAGTTCGAGTTCTTA+TGG | 0.369473 | 2.2:+8793489 | None:intergenic |
ATATATAAGTGGGACTATAC+TGG | 0.380139 | 2.2:-8795903 | MS.gene043455:CDS |
CGTCTCTGTATCTCTTCCTT+TGG | 0.404261 | 2.2:+8793576 | None:intergenic |
ATTCCAGGACGGAAGACAAT+GGG | 0.430858 | 2.2:-8795846 | MS.gene043455:CDS |
TGAAATTAAGAAGATTATCA+TGG | 0.431314 | 2.2:-8796871 | MS.gene043455:CDS |
AGCTTACCGGTCTAGATTCA+TGG | 0.434428 | 2.2:+8793468 | None:intergenic |
AGTCAAAATCAACACGAATA+GGG | 0.439721 | 2.2:+8795873 | None:intergenic |
TCGCGGTCGTAGTGGTGGCC+AGG | 0.445048 | 2.2:-8795822 | MS.gene043455:intron |
TGACATGTTCCCAACGTAAA+CGG | 0.446118 | 2.2:+8796941 | None:intergenic |
ACCTCCTCTACCATGCCTAT+AGG | 0.454914 | 2.2:+8793725 | None:intergenic |
CTTCAACCACCGTTTACGTT+GGG | 0.460484 | 2.2:-8796950 | MS.gene043455:CDS |
AACAATGGCGTTGTTATTCA+AGG | 0.461398 | 2.2:-8797136 | None:intergenic |
AACAGTAACTTACAAGAAGA+TGG | 0.468317 | 2.2:+8794666 | None:intergenic |
CAAATTCTTCTTGATTTCCA+GGG | 0.474523 | 2.2:+8796988 | None:intergenic |
GACCCCATTGTCTTCCGTCC+TGG | 0.498975 | 2.2:+8795843 | None:intergenic |
ATGGTCACGGTGGTTCCTAT+AGG | 0.509501 | 2.2:-8793740 | MS.gene043455:CDS |
GGAAGATGATCGTAAAAGAC+GGG | 0.510144 | 2.2:-8793148 | MS.gene043455:CDS |
ATATCAAGAATCACAAATGA+AGG | 0.517539 | 2.2:+8795013 | None:intergenic |
TTAGGATCCGGCGAAGATCT+CGG | 0.517857 | 2.2:-8797030 | MS.gene043455:intron |
GAAATTAAGAAGATTATCAT+GGG | 0.526031 | 2.2:-8796870 | MS.gene043455:CDS |
GATGCTTGCAAATATATAAG+TGG | 0.526542 | 2.2:-8795914 | MS.gene043455:CDS |
TATAGAGATAGAAGATTCCC+TGG | 0.536189 | 2.2:-8797005 | MS.gene043455:CDS |
ATCCACGGTTTCGGGAGAGT+GGG | 0.541783 | 2.2:-8793188 | MS.gene043455:CDS |
GACGGAAGACAATGGGGTCG+CGG | 0.546073 | 2.2:-8795839 | MS.gene043455:CDS |
TCCTATAGGCATGGTAGAGG+AGG | 0.546339 | 2.2:-8793726 | MS.gene043455:intron |
TGGGGATTCTGATGATGAGG+AGG | 0.550856 | 2.2:-8793169 | MS.gene043455:CDS |
CATGGTGGTGGCCATGGTCA+CGG | 0.554994 | 2.2:-8793753 | MS.gene043455:CDS |
ACTTCAACCACCGTTTACGT+TGG | 0.555042 | 2.2:-8796951 | MS.gene043455:CDS |
TGGGGTCGCGGTCGTAGTGG+TGG | 0.558291 | 2.2:-8795827 | MS.gene043455:CDS |
AATCCACGGTTTCGGGAGAG+TGG | 0.561885 | 2.2:-8793189 | MS.gene043455:CDS |
GGTAGACATGGTGGTGGCCA+TGG | 0.565131 | 2.2:-8793759 | MS.gene043455:CDS |
CACGGTGGTTCCTATAGGCA+TGG | 0.570531 | 2.2:-8793735 | MS.gene043455:CDS |
GATTCCAGGACGGAAGACAA+TGG | 0.573376 | 2.2:-8795847 | MS.gene043455:CDS |
TCCACGGTTTCGGGAGAGTG+GGG | 0.573957 | 2.2:-8793187 | MS.gene043455:CDS |
CTCTGACCATGAATCTAGAC+CGG | 0.574575 | 2.2:-8793474 | MS.gene043455:intron |
TAGGGGTGGATATGGAAAGT+TGG | 0.576388 | 2.2:-8794766 | MS.gene043455:CDS |
AGAAAGAGTTAGAAGTACAA+AGG | 0.582268 | 2.2:-8794740 | MS.gene043455:CDS |
ATGCTTGCAAATATATAAGT+GGG | 0.586515 | 2.2:-8795913 | MS.gene043455:CDS |
GAGTGGGGATTCTGATGATG+AGG | 0.587331 | 2.2:-8793172 | MS.gene043455:CDS |
CAAAGGCATCTTGTAGACTA+CGG | 0.592026 | 2.2:-8794723 | MS.gene043455:CDS |
AATCTTGCAGATGGTAGACA+TGG | 0.594151 | 2.2:-8793771 | MS.gene043455:intron |
TTGAGGGCTCGTGTGTGTAG+CGG | 0.595715 | 2.2:+8793549 | None:intergenic |
GGTTCCTATAGGCATGGTAG+AGG | 0.598347 | 2.2:-8793729 | MS.gene043455:CDS |
TCCCCACTCTCCCGAAACCG+TGG | 0.598648 | 2.2:+8793186 | None:intergenic |
AGGAAGATGATCGTAAAAGA+CGG | 0.598691 | 2.2:-8793149 | MS.gene043455:CDS |
CAATGGGGTCGCGGTCGTAG+TGG | 0.600530 | 2.2:-8795830 | MS.gene043455:CDS |
TATAGGAACCACCGTGACCA+TGG | 0.602408 | 2.2:+8793742 | None:intergenic |
TTGGCATTATAGATTACCAA+AGG | 0.609178 | 2.2:-8793592 | MS.gene043455:intron |
CATCTTGTAGACTACGGCAC+TGG | 0.611982 | 2.2:-8794717 | MS.gene043455:CDS |
CATCAGATCATGAATCTCGA+AGG | 0.626929 | 2.2:-8793520 | MS.gene043455:CDS |
CTATACGCCGAGATCTTCGC+CGG | 0.631598 | 2.2:+8797023 | None:intergenic |
TTTGACTGGGGATTCCAGGA+CGG | 0.649704 | 2.2:-8795857 | MS.gene043455:CDS |
CAAGAAGATGGAATAACTGG+CGG | 0.652818 | 2.2:+8794678 | None:intergenic |
AAGAACACCAAAACTCCTTG+TGG | 0.657938 | 2.2:-8796840 | MS.gene043455:CDS |
GCAGATGGTAGACATGGTGG+TGG | 0.661120 | 2.2:-8793765 | MS.gene043455:intron |
CTACTCTCGTGAAGATACTG+AGG | 0.661933 | 2.2:-8795936 | MS.gene043455:CDS |
TTCCAGGACGGAAGACAATG+GGG | 0.677075 | 2.2:-8795845 | MS.gene043455:CDS |
AAAACAAAGCAAAAGCCACA+AGG | 0.680638 | 2.2:+8796825 | None:intergenic |
CATGTTCCCAACGTAAACGG+TGG | 0.708791 | 2.2:+8796944 | None:intergenic |
GGTGGTGGCCATGGTCACGG+TGG | 0.716513 | 2.2:-8793750 | MS.gene043455:CDS |
CTTGCAGATGGTAGACATGG+TGG | 0.716756 | 2.2:-8793768 | MS.gene043455:intron |
GAAGATGATCGTAAAAGACG+GGG | 0.737966 | 2.2:-8793147 | MS.gene043455:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAGAATATATAACATTA+TGG | + | chr2.2:8794836-8794855 | None:intergenic | 10.0% |
!! | ATTTATGAAAAATAGTTAAA+AGG | + | chr2.2:8795229-8795248 | None:intergenic | 10.0% |
!!! | CAATTGATATTTTAAAAATT+AGG | + | chr2.2:8794946-8794965 | None:intergenic | 10.0% |
!!! | TACTGTTTTTTTTTTTTATA+TGG | - | chr2.2:8795625-8795644 | MS.gene043455:intron | 10.0% |
!! | AAAAAAGTTAAAATAAGTCA+GGG | - | chr2.2:8793855-8793874 | MS.gene043455:intron | 15.0% |
!! | AAAAAATAATCAAATTGTCT+AGG | + | chr2.2:8794540-8794559 | None:intergenic | 15.0% |
!! | AAATTAAGACAAATAATACT+TGG | + | chr2.2:8797046-8797065 | None:intergenic | 15.0% |
!! | ACATAATACAATACAAAATT+GGG | + | chr2.2:8795086-8795105 | None:intergenic | 15.0% |
!! | TAAAAAAGTTAAAATAAGTC+AGG | - | chr2.2:8793854-8793873 | MS.gene043455:intron | 15.0% |
!! | TTAAGTTATTTATCCAAAAA+GGG | + | chr2.2:8793557-8793576 | None:intergenic | 15.0% |
!! | TTTAATTAAATTTGTCTCTT+TGG | - | chr2.2:8796664-8796683 | MS.gene043455:intron | 15.0% |
!!! | ACTTTTTTATGGAAATAATA+AGG | + | chr2.2:8793843-8793862 | None:intergenic | 15.0% |
!!! | GACTTATTTTAACTTTTTTA+TGG | + | chr2.2:8793854-8793873 | None:intergenic | 15.0% |
!!! | GTTTTTAATAACAAATTATG+TGG | - | chr2.2:8795690-8795709 | MS.gene043455:intron | 15.0% |
!!! | TTTTACAACAAAATTACTTT+AGG | - | chr2.2:8795392-8795411 | MS.gene043455:intron | 15.0% |
!! | AAAATAGTTAAAAGGATATC+TGG | + | chr2.2:8795221-8795240 | None:intergenic | 20.0% |
!! | AACAAAAAAAAAACAATGAG+AGG | + | chr2.2:8796389-8796408 | None:intergenic | 20.0% |
!! | ATCTATTTGAATATTGTAGT+TGG | - | chr2.2:8794176-8794195 | MS.gene043455:intron | 20.0% |
!! | ATTCACTTATGAAAATGTTT+GGG | + | chr2.2:8793988-8794007 | None:intergenic | 20.0% |
!! | ATTTATTTGTTTGAACATGT+AGG | + | chr2.2:8795322-8795341 | None:intergenic | 20.0% |
!! | CACATAATACAATACAAAAT+TGG | + | chr2.2:8795087-8795106 | None:intergenic | 20.0% |
!! | CAGAAATTATAAAATGTAAC+AGG | + | chr2.2:8796435-8796454 | None:intergenic | 20.0% |
!! | GAAATTAAGAAGATTATCAT+GGG | - | chr2.2:8793405-8793424 | MS.gene043455:intron | 20.0% |
!! | GTTAAGTTATTTATCCAAAA+AGG | + | chr2.2:8793558-8793577 | None:intergenic | 20.0% |
!! | TATTCACTTATGAAAATGTT+TGG | + | chr2.2:8793989-8794008 | None:intergenic | 20.0% |
!! | TCATTCAATAAAAATCAAGT+AGG | + | chr2.2:8795727-8795746 | None:intergenic | 20.0% |
!! | TGAAATAATAGTTTCTATAC+AGG | - | chr2.2:8796137-8796156 | MS.gene043455:intron | 20.0% |
!! | TGAAATTAAGAAGATTATCA+TGG | - | chr2.2:8793404-8793423 | MS.gene043455:intron | 20.0% |
!! | TGCTAAATCTTAAAAACTAT+GGG | + | chr2.2:8795053-8795072 | None:intergenic | 20.0% |
!! | TTGTACAAATTAATGACTAA+GGG | + | chr2.2:8794051-8794070 | None:intergenic | 20.0% |
!! | TTTATTTGTTTGAACATGTA+GGG | + | chr2.2:8795321-8795340 | None:intergenic | 20.0% |
!! | TTTGTACAAATTAATGACTA+AGG | + | chr2.2:8794052-8794071 | None:intergenic | 20.0% |
!!! | ACATTTTTGTAACAAGAATA+TGG | + | chr2.2:8797003-8797022 | None:intergenic | 20.0% |
!!! | ACGTAGTTATTTTAATTTCT+AGG | - | chr2.2:8793519-8793538 | MS.gene043455:CDS | 20.0% |
!!! | CTGTTACATTTTATAATTTC+TGG | - | chr2.2:8796433-8796452 | MS.gene043455:intron | 20.0% |
!!! | GTTTAAATTTCTTTTCCTAA+TGG | - | chr2.2:8795996-8796015 | MS.gene043455:intron | 20.0% |
!!! | TAAATCATTTGTAGTTTTGA+AGG | + | chr2.2:8796648-8796667 | None:intergenic | 20.0% |
!!! | TTATTTGTCTTAATTTGATC+TGG | - | chr2.2:8797050-8797069 | MS.gene043455:intron | 20.0% |
! | AAAATAACCAAATTGTCTAG+TGG | + | chr2.2:8794686-8794705 | None:intergenic | 25.0% |
! | AACAATGTAAACATAGGTAT+GGG | + | chr2.2:8795811-8795830 | None:intergenic | 25.0% |
! | AGTTATAGAAAAATGTGAGA+AGG | - | chr2.2:8794136-8794155 | MS.gene043455:intron | 25.0% |
! | ATATCAAGAATCACAAATGA+AGG | + | chr2.2:8795265-8795284 | None:intergenic | 25.0% |
! | ATGAACTTTACATTTGATCA+AGG | - | chr2.2:8795291-8795310 | MS.gene043455:intron | 25.0% |
! | ATGCTTGCAAATATATAAGT+GGG | - | chr2.2:8794362-8794381 | MS.gene043455:intron | 25.0% |
! | ATTCATACTGCACAATAAAT+AGG | + | chr2.2:8795926-8795945 | None:intergenic | 25.0% |
! | CTGCTAAATCTTAAAAACTA+TGG | + | chr2.2:8795054-8795073 | None:intergenic | 25.0% |
! | TAACAATGTAAACATAGGTA+TGG | + | chr2.2:8795812-8795831 | None:intergenic | 25.0% |
! | TATGTTAGAAAGTCAATTGT+TGG | - | chr2.2:8796040-8796059 | MS.gene043455:intron | 25.0% |
! | TCAACTAACAATGTAAACAT+AGG | + | chr2.2:8795817-8795836 | None:intergenic | 25.0% |
! | TCTATTCTCTGCAAATTTAA+CGG | - | chr2.2:8796469-8796488 | MS.gene043455:intron | 25.0% |
! | TGAGAAAAAATGTTAGCAAA+TGG | - | chr2.2:8793755-8793774 | MS.gene043455:CDS | 25.0% |
! | TGTTAATTGGAGTGATTTAT+TGG | - | chr2.2:8794210-8794229 | MS.gene043455:intron | 25.0% |
! | TTTGAATATGAATGTCATTG+TGG | - | chr2.2:8796097-8796116 | MS.gene043455:intron | 25.0% |
!! | AGATTCACTATGATTTTACT+TGG | - | chr2.2:8795347-8795366 | MS.gene043455:intron | 25.0% |
!! | GCTTCTTTTATAAATTATCC+TGG | - | chr2.2:8793898-8793917 | MS.gene043455:intron | 25.0% |
!! | TATGTTATTCTCTTTTCTGA+TGG | + | chr2.2:8794598-8794617 | None:intergenic | 25.0% |
!!! | CTAGACAATTTGGTTATTTT+TGG | - | chr2.2:8794686-8794705 | MS.gene043455:CDS | 25.0% |
!!! | GTCTTTGAATTTTAACCATT+AGG | + | chr2.2:8796014-8796033 | None:intergenic | 25.0% |
!!! | TAGAACTGATTGATGATTTT+GGG | - | chr2.2:8794286-8794305 | MS.gene043455:intron | 25.0% |
!!! | TAGTACTGATTGATGATTTT+GGG | - | chr2.2:8794250-8794269 | MS.gene043455:intron | 25.0% |
!!! | TTAGAACTGATTGATGATTT+TGG | - | chr2.2:8794285-8794304 | MS.gene043455:intron | 25.0% |
!!! | TTAGTACTGATTGATGATTT+TGG | - | chr2.2:8794249-8794268 | MS.gene043455:intron | 25.0% |
AAAAAAAAACAATGAGAGGC+TGG | + | chr2.2:8796385-8796404 | None:intergenic | 30.0% | |
AAAAACTATGGGATACTACA+CGG | + | chr2.2:8795042-8795061 | None:intergenic | 30.0% | |
AAACCTTATCCCATTAAGTA+GGG | - | chr2.2:8794789-8794808 | MS.gene043455:intron | 30.0% | |
AACAGTAACTTACAAGAAGA+TGG | + | chr2.2:8795612-8795631 | None:intergenic | 30.0% | |
AATTGTCTTGATTGAAGAGT+TGG | - | chr2.2:8794961-8794980 | MS.gene043455:intron | 30.0% | |
AATTTAAACCCTAAACGCTA+AGG | + | chr2.2:8795985-8796004 | None:intergenic | 30.0% | |
AGTCAAAATCAACACGAATA+GGG | + | chr2.2:8794405-8794424 | None:intergenic | 30.0% | |
AGTGCTTCTTAAAAAGTTGA+TGG | + | chr2.2:8796604-8796623 | None:intergenic | 30.0% | |
AGTTTATAGCATAAGCACTT+AGG | - | chr2.2:8793582-8793601 | MS.gene043455:CDS | 30.0% | |
ATAGAAAAATGTGAGAAGGA+AGG | - | chr2.2:8794140-8794159 | MS.gene043455:intron | 30.0% | |
ATATATAAGTGGGACTATAC+TGG | - | chr2.2:8794372-8794391 | MS.gene043455:intron | 30.0% | |
ATTATGAACATGTCATAAGC+TGG | - | chr2.2:8793949-8793968 | MS.gene043455:intron | 30.0% | |
CAAATTCTTCTTGATTTCCA+GGG | + | chr2.2:8793290-8793309 | None:intergenic | 30.0% | |
GATGCTTGCAAATATATAAG+TGG | - | chr2.2:8794361-8794380 | MS.gene043455:intron | 30.0% | |
GGATGTTAGATAGTTGAAAA+AGG | + | chr2.2:8796414-8796433 | None:intergenic | 30.0% | |
GTACACTATTCAACTCAATT+AGG | - | chr2.2:8793161-8793180 | MS.gene043455:CDS | 30.0% | |
GTGAATATTGATCAGAGAAA+TGG | + | chr2.2:8796275-8796294 | None:intergenic | 30.0% | |
GTGTAAATATGCAATACATG+AGG | - | chr2.2:8795851-8795870 | MS.gene043455:CDS | 30.0% | |
TAAGAAGATTATCATGGGTT+TGG | - | chr2.2:8793410-8793429 | MS.gene043455:intron | 30.0% | |
TAAGCTGTAAGCTCAAAATT+TGG | - | chr2.2:8793802-8793821 | MS.gene043455:intron | 30.0% | |
TAATACTTGGATCAACAAGA+AGG | + | chr2.2:8797033-8797052 | None:intergenic | 30.0% | |
TAGTTTACCACTAGACAATT+TGG | - | chr2.2:8794676-8794695 | MS.gene043455:intron | 30.0% | |
TCAAATTCTTCTTGATTTCC+AGG | + | chr2.2:8793291-8793310 | None:intergenic | 30.0% | |
TCAAATTGTCTAGGTAAACA+TGG | + | chr2.2:8794531-8794550 | None:intergenic | 30.0% | |
TCCTTAATTCTACATACGTA+GGG | - | chr2.2:8795491-8795510 | MS.gene043455:intron | 30.0% | |
TTACAAGAAGATGGAATAAC+TGG | + | chr2.2:8795603-8795622 | None:intergenic | 30.0% | |
TTCCTTAATTCTACATACGT+AGG | - | chr2.2:8795490-8795509 | MS.gene043455:intron | 30.0% | |
TTGGCATTATAGATTACCAA+AGG | - | chr2.2:8796683-8796702 | MS.gene043455:intron | 30.0% | |
! | AGAAAGAGTTAGAAGTACAA+AGG | - | chr2.2:8795535-8795554 | MS.gene043455:intron | 30.0% |
! | ATACCTGAGAAATTAGCTTA+TGG | - | chr2.2:8793629-8793648 | MS.gene043455:intron | 30.0% |
! | ATGATCTGATGTTCTTTTTG+AGG | + | chr2.2:8796746-8796765 | None:intergenic | 30.0% |
! | CAAATAGAAGCATAAGCTTT+CGG | + | chr2.2:8796939-8796958 | None:intergenic | 30.0% |
! | GGTGATAATGCATTGTTAAT+TGG | - | chr2.2:8794197-8794216 | MS.gene043455:intron | 30.0% |
! | TAATTTCTAGGTATTACCCT+AGG | - | chr2.2:8793531-8793550 | MS.gene043455:CDS | 30.0% |
! | TACCTGAGAAATTAGCTTAT+GGG | - | chr2.2:8793630-8793649 | MS.gene043455:intron | 30.0% |
! | TGATCTGATGTTCTTTTTGA+GGG | + | chr2.2:8796745-8796764 | None:intergenic | 30.0% |
! | TTAGCAGTGATAGAAGTTTT+AGG | + | chr2.2:8796973-8796992 | None:intergenic | 30.0% |
! | TTCTTCGTTGTGAATGTTTT+AGG | - | chr2.2:8793227-8793246 | MS.gene043455:intron | 30.0% |
!! | AGCAATTTTAATCTTGCAGA+TGG | - | chr2.2:8796495-8796514 | MS.gene043455:intron | 30.0% |
!! | TGTGCTATTGTCTTTTCTAA+TGG | + | chr2.2:8794747-8794766 | None:intergenic | 30.0% |
!!! | CAACTTTTTAAGAAGCACTT+TGG | - | chr2.2:8796605-8796624 | MS.gene043455:intron | 30.0% |
!!! | GAACATGTCATTTTACACTA+CGG | - | chr2.2:8793347-8793366 | MS.gene043455:intron | 30.0% |
!!! | TATTCGTGTTGATTTTGACT+GGG | - | chr2.2:8794405-8794424 | MS.gene043455:intron | 30.0% |
!!! | TCTTATGGCTTTGTTTTCTA+AGG | - | chr2.2:8795117-8795136 | MS.gene043455:intron | 30.0% |
AAAACAAAGCAAAAGCCACA+AGG | + | chr2.2:8793453-8793472 | None:intergenic | 35.0% | |
AAAAGATGCTTAGATTCCAC+AGG | + | chr2.2:8796181-8796200 | None:intergenic | 35.0% | |
AAATAGTGTGACATAGCATG+TGG | - | chr2.2:8796893-8796912 | MS.gene043455:CDS | 35.0% | |
AAATATCGCCTTAGCGTTTA+GGG | - | chr2.2:8795974-8795993 | MS.gene043455:intron | 35.0% | |
AACAAGTAAAATGTTGAGCC+AGG | + | chr2.2:8795673-8795692 | None:intergenic | 35.0% | |
ACAAGTAAAATGTTGAGCCA+GGG | + | chr2.2:8795672-8795691 | None:intergenic | 35.0% | |
ACATGCTATGTCACACTATT+TGG | + | chr2.2:8796894-8796913 | None:intergenic | 35.0% | |
ACTCGCTTGCAAATTACTTT+AGG | - | chr2.2:8795419-8795438 | MS.gene043455:intron | 35.0% | |
AGAATGTGAGTGAAATGAAG+AGG | - | chr2.2:8794095-8794114 | MS.gene043455:intron | 35.0% | |
AGGAAAAAAATCCACGGTTT+CGG | - | chr2.2:8797078-8797097 | MS.gene043455:intron | 35.0% | |
AGGAAGATGATCGTAAAAGA+CGG | - | chr2.2:8797126-8797145 | MS.gene043455:intron | 35.0% | |
ATGTGTGTTTCCAGTTCTTA+TGG | - | chr2.2:8795102-8795121 | MS.gene043455:intron | 35.0% | |
ATTTATCCAAAAAGGGCCTA+GGG | + | chr2.2:8793550-8793569 | None:intergenic | 35.0% | |
CAAACCTTATCCCATTAAGT+AGG | - | chr2.2:8794788-8794807 | MS.gene043455:intron | 35.0% | |
CAGTCAAAATCAACACGAAT+AGG | + | chr2.2:8794406-8794425 | None:intergenic | 35.0% | |
CCTTAATTCTACATACGTAG+GGG | - | chr2.2:8795492-8795511 | MS.gene043455:intron | 35.0% | |
CTACTTAATGGGATAAGGTT+TGG | + | chr2.2:8794790-8794809 | None:intergenic | 35.0% | |
CTATGTCACACTATTTGGTA+TGG | + | chr2.2:8796889-8796908 | None:intergenic | 35.0% | |
GAAAACAAAGCCATAAGAAC+TGG | + | chr2.2:8795115-8795134 | None:intergenic | 35.0% | |
GAATGTGAGTGAAATGAAGA+GGG | - | chr2.2:8794096-8794115 | MS.gene043455:intron | 35.0% | |
GATAAGCGCTTATTATGGAT+AGG | - | chr2.2:8793707-8793726 | MS.gene043455:intron | 35.0% | |
GCAATATATTGTCTTACCTG+TGG | - | chr2.2:8796162-8796181 | MS.gene043455:intron | 35.0% | |
TAATCTCCATACTGTATGCT+AGG | - | chr2.2:8796320-8796339 | MS.gene043455:intron | 35.0% | |
TAATGACTAAGGGTCTGTTT+GGG | + | chr2.2:8794041-8794060 | None:intergenic | 35.0% | |
TAGAAAAGACAATAGCACAG+TGG | - | chr2.2:8794748-8794767 | MS.gene043455:CDS | 35.0% | |
TATAGAGATAGAAGATTCCC+TGG | - | chr2.2:8793270-8793289 | MS.gene043455:intron | 35.0% | |
TATTTATCCAAAAAGGGCCT+AGG | + | chr2.2:8793551-8793570 | None:intergenic | 35.0% | |
TCAAGATTTGTAGAGCTTAC+CGG | + | chr2.2:8796823-8796842 | None:intergenic | 35.0% | |
TTAATGACTAAGGGTCTGTT+TGG | + | chr2.2:8794042-8794061 | None:intergenic | 35.0% | |
TTTCACTCACATTCTATGCA+AGG | + | chr2.2:8794090-8794109 | None:intergenic | 35.0% | |
! | AAATTATCCTGGAGAGCTTT+TGG | - | chr2.2:8793909-8793928 | MS.gene043455:intron | 35.0% |
! | ACCTGAGAAATTAGCTTATG+GGG | - | chr2.2:8793631-8793650 | MS.gene043455:intron | 35.0% |
!! | AAGGCGATATTTGCTATTGA+AGG | + | chr2.2:8795966-8795985 | None:intergenic | 35.0% |
!! | CTTGAAAGGGCATCAAATTA+TGG | - | chr2.2:8795763-8795782 | MS.gene043455:intron | 35.0% |
!! | TCTAAGGTTGCTTTAGTTCT+TGG | - | chr2.2:8795133-8795152 | MS.gene043455:intron | 35.0% |
!!! | ATTCGTGTTGATTTTGACTG+GGG | - | chr2.2:8794406-8794425 | MS.gene043455:intron | 35.0% |
!!! | CTATTCGTGTTGATTTTGAC+TGG | - | chr2.2:8794404-8794423 | MS.gene043455:intron | 35.0% |
!!! | GTTGTGAATGTTTTAGGATC+CGG | - | chr2.2:8793233-8793252 | MS.gene043455:intron | 35.0% |
!!! | TATGAACTTTTTTCACGAGC+TGG | - | chr2.2:8793381-8793400 | MS.gene043455:intron | 35.0% |
!!! | TGCTATTTTTTCGCCAAACA+GGG | + | chr2.2:8793608-8793627 | None:intergenic | 35.0% |
AAGAACACCAAAACTCCTTG+TGG | - | chr2.2:8793435-8793454 | MS.gene043455:intron | 40.0% | |
AATCTTGCAGATGGTAGACA+TGG | - | chr2.2:8796504-8796523 | MS.gene043455:intron | 40.0% | |
ACACTATTTGGTATGGCAAC+TGG | + | chr2.2:8796882-8796901 | None:intergenic | 40.0% | |
AGCTGTCTTATAGCTGATAG+CGG | - | chr2.2:8793685-8793704 | MS.gene043455:intron | 40.0% | |
ATGCACTAAAGTTGTTCACC+TGG | + | chr2.2:8794474-8794493 | None:intergenic | 40.0% | |
ATGTAGCCAACCCTACTTAA+TGG | + | chr2.2:8794802-8794821 | None:intergenic | 40.0% | |
CAAATATCGCCTTAGCGTTT+AGG | - | chr2.2:8795973-8795992 | MS.gene043455:intron | 40.0% | |
CAACCCTACTTAATGGGATA+AGG | + | chr2.2:8794795-8794814 | None:intergenic | 40.0% | |
CAAGAAGATGGAATAACTGG+CGG | + | chr2.2:8795600-8795619 | None:intergenic | 40.0% | |
CAATAAATAGGATGCAGGAG+AGG | + | chr2.2:8795914-8795933 | None:intergenic | 40.0% | |
CATCAGATCATGAATCTCGA+AGG | - | chr2.2:8796755-8796774 | MS.gene043455:intron | 40.0% | |
CCCCTACGTATGTAGAATTA+AGG | + | chr2.2:8795495-8795514 | None:intergenic | 40.0% | |
CTGATGCTGTTAATGTTTGC+AGG | - | chr2.2:8795166-8795185 | MS.gene043455:intron | 40.0% | |
CTGCACAATAAATAGGATGC+AGG | + | chr2.2:8795919-8795938 | None:intergenic | 40.0% | |
CTTATCCCATTAAGTAGGGT+TGG | - | chr2.2:8794793-8794812 | MS.gene043455:intron | 40.0% | |
CTTATTTCCAAAAGCTCTCC+AGG | + | chr2.2:8793919-8793938 | None:intergenic | 40.0% | |
GAAGATGATCGTAAAAGACG+GGG | - | chr2.2:8797128-8797147 | MS.gene043455:intron | 40.0% | |
GGAAAAAAATCCACGGTTTC+GGG | - | chr2.2:8797079-8797098 | MS.gene043455:intron | 40.0% | |
GGAAGATGATCGTAAAAGAC+GGG | - | chr2.2:8797127-8797146 | MS.gene043455:intron | 40.0% | |
GTTCATAAGACCAACACATG+TGG | + | chr2.2:8796355-8796374 | None:intergenic | 40.0% | |
GTTGCCAGGAAAAAAATCCA+CGG | - | chr2.2:8797072-8797091 | MS.gene043455:intron | 40.0% | |
TAATTCTACATACGTAGGGG+TGG | - | chr2.2:8795495-8795514 | MS.gene043455:intron | 40.0% | |
TGACATGTTCCCAACGTAAA+CGG | + | chr2.2:8793337-8793356 | None:intergenic | 40.0% | |
TGTAGCCAACCCTACTTAAT+GGG | + | chr2.2:8794801-8794820 | None:intergenic | 40.0% | |
! | CCTGAGAAATTAGCTTATGG+GGG | - | chr2.2:8793632-8793651 | MS.gene043455:intron | 40.0% |
! | CTTAATTTGATCTGGTTGCC+AGG | - | chr2.2:8797058-8797077 | MS.gene043455:intron | 40.0% |
! | TAGCGGATAAGCGCTTATTA+TGG | - | chr2.2:8793702-8793721 | MS.gene043455:intron | 40.0% |
!! | AGCAACAACACTGACTTGAA+AGG | - | chr2.2:8795749-8795768 | MS.gene043455:intron | 40.0% |
!! | ATTAAGTAGGGTTGGCTACA+TGG | - | chr2.2:8794801-8794820 | MS.gene043455:intron | 40.0% |
!! | CAAAGGCATCTTGTAGACTA+CGG | - | chr2.2:8795552-8795571 | MS.gene043455:intron | 40.0% |
!! | GCAACAACACTGACTTGAAA+GGG | - | chr2.2:8795750-8795769 | MS.gene043455:intron | 40.0% |
!!! | CTGCTATTTTTTCGCCAAAC+AGG | + | chr2.2:8793609-8793628 | None:intergenic | 40.0% |
!!! | GAAACCGTGGATTTTTTTCC+TGG | + | chr2.2:8797079-8797098 | None:intergenic | 40.0% |
ACTTCAACCACCGTTTACGT+TGG | - | chr2.2:8793324-8793343 | MS.gene043455:intron | 45.0% | |
AGCTTACCGGTCTAGATTCA+TGG | + | chr2.2:8796810-8796829 | None:intergenic | 45.0% | |
ATAAGCACTTAGGCCCTGTT+TGG | - | chr2.2:8793592-8793611 | MS.gene043455:intron | 45.0% | |
ATTCCAGGACGGAAGACAAT+GGG | - | chr2.2:8794429-8794448 | MS.gene043455:intron | 45.0% | |
CCCCCATAAGCTAATTTCTC+AGG | + | chr2.2:8793635-8793654 | None:intergenic | 45.0% | |
CGTCTCTGTATCTCTTCCTT+TGG | + | chr2.2:8796702-8796721 | None:intergenic | 45.0% | |
CTACTCTCGTGAAGATACTG+AGG | - | chr2.2:8794339-8794358 | MS.gene043455:intron | 45.0% | |
CTCTGACCATGAATCTAGAC+CGG | - | chr2.2:8796801-8796820 | MS.gene043455:intron | 45.0% | |
CTTCAACCACCGTTTACGTT+GGG | - | chr2.2:8793325-8793344 | MS.gene043455:intron | 45.0% | |
CTTCAGCCTAGCATACAGTA+TGG | + | chr2.2:8796329-8796348 | None:intergenic | 45.0% | |
GTCATTGTGGATGACTAAGC+TGG | - | chr2.2:8796110-8796129 | MS.gene043455:intron | 45.0% | |
TACATACGTAGGGGTGGATA+TGG | - | chr2.2:8795501-8795520 | MS.gene043455:intron | 45.0% | |
TAGGGGTGGATATGGAAAGT+TGG | - | chr2.2:8795509-8795528 | MS.gene043455:intron | 45.0% | |
TATGGATCTTCAGCTACTCG+TGG | - | chr2.2:8795643-8795662 | MS.gene043455:intron | 45.0% | |
! | ACTGAAAGAGTGCACATCGT+TGG | + | chr2.2:8795883-8795902 | None:intergenic | 45.0% |
! | GCAAAAGCCACAAGGAGTTT+TGG | + | chr2.2:8793445-8793464 | None:intergenic | 45.0% |
! | GCTGAAGTATCCACATGTGT+TGG | - | chr2.2:8796342-8796361 | MS.gene043455:intron | 45.0% |
! | GGTCAGAGTTCGAGTTCTTA+TGG | + | chr2.2:8796789-8796808 | None:intergenic | 45.0% |
! | GTATTACCCTAGGCCCTTTT+TGG | - | chr2.2:8793541-8793560 | MS.gene043455:CDS | 45.0% |
!!! | TGATTTTGACTGGGGATTCC+AGG | - | chr2.2:8794414-8794433 | MS.gene043455:intron | 45.0% |
AATAGGATGCAGGAGAGGAC+AGG | + | chr2.2:8795909-8795928 | None:intergenic | 50.0% | |
ACCTCCTCTACCATGCCTAT+AGG | + | chr2.2:8796553-8796572 | None:intergenic | 50.0% | |
ATGGTCACGGTGGTTCCTAT+AGG | - | chr2.2:8796535-8796554 | MS.gene043455:intron | 50.0% | |
CATCTTGTAGACTACGGCAC+TGG | - | chr2.2:8795558-8795577 | MS.gene043455:intron | 50.0% | |
CATGTTCCCAACGTAAACGG+TGG | + | chr2.2:8793334-8793353 | None:intergenic | 50.0% | |
CTTGCAGATGGTAGACATGG+TGG | - | chr2.2:8796507-8796526 | MS.gene043455:intron | 50.0% | |
GATTCCAGGACGGAAGACAA+TGG | - | chr2.2:8794428-8794447 | MS.gene043455:intron | 50.0% | |
GGTTCCTATAGGCATGGTAG+AGG | - | chr2.2:8796546-8796565 | MS.gene043455:intron | 50.0% | |
GTGTGACATAGCATGTGGTG+TGG | - | chr2.2:8796898-8796917 | MS.gene043455:CDS | 50.0% | |
TATAGGAACCACCGTGACCA+TGG | + | chr2.2:8796536-8796555 | None:intergenic | 50.0% | |
TATGGGGGATGAGCTCATAG+CGG | - | chr2.2:8793647-8793666 | MS.gene043455:intron | 50.0% | |
TCCTATAGGCATGGTAGAGG+AGG | - | chr2.2:8796549-8796568 | MS.gene043455:intron | 50.0% | |
TTAGGATCCGGCGAAGATCT+CGG | - | chr2.2:8793245-8793264 | MS.gene043455:intron | 50.0% | |
TTCCAGGACGGAAGACAATG+GGG | - | chr2.2:8794430-8794449 | MS.gene043455:intron | 50.0% | |
TTTGACTGGGGATTCCAGGA+CGG | - | chr2.2:8794418-8794437 | MS.gene043455:intron | 50.0% | |
! | GAAAGAGTGCACATCGTTGG+AGG | + | chr2.2:8795880-8795899 | None:intergenic | 50.0% |
! | GAGTGGGGATTCTGATGATG+AGG | - | chr2.2:8797103-8797122 | MS.gene043455:intron | 50.0% |
! | TGGGGATTCTGATGATGAGG+AGG | - | chr2.2:8797106-8797125 | MS.gene043455:intron | 50.0% |
!! | AGACTACGGCACTGGTTCTT+TGG | - | chr2.2:8795566-8795585 | MS.gene043455:intron | 50.0% |
!! | GACTACGGCACTGGTTCTTT+GGG | - | chr2.2:8795567-8795586 | MS.gene043455:intron | 50.0% |
AATCCACGGTTTCGGGAGAG+TGG | - | chr2.2:8797086-8797105 | MS.gene043455:intron | 55.0% | |
ATCCACGGTTTCGGGAGAGT+GGG | - | chr2.2:8797087-8797106 | MS.gene043455:intron | 55.0% | |
CACGGTGGTTCCTATAGGCA+TGG | - | chr2.2:8796540-8796559 | MS.gene043455:intron | 55.0% | |
CTATACGCCGAGATCTTCGC+CGG | + | chr2.2:8793255-8793274 | None:intergenic | 55.0% | |
GCAGATGGTAGACATGGTGG+TGG | - | chr2.2:8796510-8796529 | MS.gene043455:intron | 55.0% | |
TTGAGGGCTCGTGTGTGTAG+CGG | + | chr2.2:8796729-8796748 | None:intergenic | 55.0% | |
! | ACAATGAGAGGCTGGTTGCG+TGG | + | chr2.2:8796377-8796396 | None:intergenic | 55.0% |
GACCCCATTGTCTTCCGTCC+TGG | + | chr2.2:8794435-8794454 | None:intergenic | 60.0% | |
GACGGAAGACAATGGGGTCG+CGG | - | chr2.2:8794436-8794455 | MS.gene043455:intron | 60.0% | |
TCAGCTACTCGTGGCAACCC+TGG | - | chr2.2:8795652-8795671 | MS.gene043455:intron | 60.0% | |
TCCACGGTTTCGGGAGAGTG+GGG | - | chr2.2:8797088-8797107 | MS.gene043455:intron | 60.0% | |
!! | CATGGTGGTGGCCATGGTCA+CGG | - | chr2.2:8796522-8796541 | MS.gene043455:intron | 60.0% |
!! | GGTAGACATGGTGGTGGCCA+TGG | - | chr2.2:8796516-8796535 | MS.gene043455:intron | 60.0% |
CAATGGGGTCGCGGTCGTAG+TGG | - | chr2.2:8794445-8794464 | MS.gene043455:intron | 65.0% | |
TCCCCACTCTCCCGAAACCG+TGG | + | chr2.2:8797092-8797111 | None:intergenic | 65.0% | |
TCGCGGTCGTAGTGGTGGCC+AGG | - | chr2.2:8794453-8794472 | MS.gene043455:intron | 70.0% | |
TGGGGTCGCGGTCGTAGTGG+TGG | - | chr2.2:8794448-8794467 | MS.gene043455:intron | 70.0% | |
! | GGTGGTGGCCATGGTCACGG+TGG | - | chr2.2:8796525-8796544 | MS.gene043455:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.2 | gene | 8793143 | 8797154 | 8793143 | ID=MS.gene043455 |
chr2.2 | mRNA | 8793143 | 8797154 | 8793143 | ID=MS.gene043455.t1;Parent=MS.gene043455 |
chr2.2 | exon | 8797137 | 8797154 | 8797137 | ID=MS.gene043455.t1.exon1;Parent=MS.gene043455.t1 |
chr2.2 | CDS | 8797137 | 8797154 | 8797137 | ID=cds.MS.gene043455.t1;Parent=MS.gene043455.t1 |
chr2.2 | exon | 8796825 | 8797048 | 8796825 | ID=MS.gene043455.t1.exon2;Parent=MS.gene043455.t1 |
chr2.2 | CDS | 8796825 | 8797048 | 8796825 | ID=cds.MS.gene043455.t1;Parent=MS.gene043455.t1 |
chr2.2 | exon | 8795823 | 8795961 | 8795823 | ID=MS.gene043455.t1.exon3;Parent=MS.gene043455.t1 |
chr2.2 | CDS | 8795823 | 8795961 | 8795823 | ID=cds.MS.gene043455.t1;Parent=MS.gene043455.t1 |
chr2.2 | exon | 8795027 | 8795109 | 8795027 | ID=MS.gene043455.t1.exon4;Parent=MS.gene043455.t1 |
chr2.2 | CDS | 8795027 | 8795109 | 8795027 | ID=cds.MS.gene043455.t1;Parent=MS.gene043455.t1 |
chr2.2 | exon | 8794679 | 8794785 | 8794679 | ID=MS.gene043455.t1.exon5;Parent=MS.gene043455.t1 |
chr2.2 | CDS | 8794679 | 8794785 | 8794679 | ID=cds.MS.gene043455.t1;Parent=MS.gene043455.t1 |
chr2.2 | exon | 8793727 | 8793783 | 8793727 | ID=MS.gene043455.t1.exon6;Parent=MS.gene043455.t1 |
chr2.2 | CDS | 8793727 | 8793783 | 8793727 | ID=cds.MS.gene043455.t1;Parent=MS.gene043455.t1 |
chr2.2 | exon | 8793475 | 8793602 | 8793475 | ID=MS.gene043455.t1.exon7;Parent=MS.gene043455.t1 |
chr2.2 | CDS | 8793475 | 8793602 | 8793475 | ID=cds.MS.gene043455.t1;Parent=MS.gene043455.t1 |
chr2.2 | exon | 8793143 | 8793217 | 8793143 | ID=MS.gene043455.t1.exon8;Parent=MS.gene043455.t1 |
chr2.2 | CDS | 8793143 | 8793217 | 8793143 | ID=cds.MS.gene043455.t1;Parent=MS.gene043455.t1 |
Gene Sequence |
Protein sequence |