Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028868.t1 | XP_013465148.1 | 92.8 | 276 | 3 | 2 | 1 | 276 | 1 | 259 | 4.20E-106 | 394.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028868.t1 | Q9XFD1 | 77.0 | 200 | 29 | 2 | 1 | 198 | 1 | 185 | 4.2e-86 | 319.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028868.t1 | A0A072VCJ4 | 92.8 | 276 | 3 | 2 | 1 | 276 | 1 | 259 | 3.1e-106 | 394.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028868.t1 | MTR_2g090655 | 92.754 | 276 | 3 | 2 | 1 | 276 | 1 | 259 | 0.0 | 508 |
| MS.gene028868.t1 | MTR_2g096560 | 39.744 | 78 | 47 | 0 | 31 | 108 | 4 | 81 | 4.13e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene028868.t1 | AT5G44200 | 72.662 | 278 | 51 | 3 | 1 | 275 | 1 | 256 | 1.19e-125 | 358 |
| MS.gene028868.t1 | AT5G44200 | 72.662 | 278 | 51 | 3 | 1 | 275 | 1 | 256 | 1.19e-125 | 358 |
Find 72 sgRNAs with CRISPR-Local
Find 240 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAATTCTTCTTGATTTC+CGG | 0.130294 | 2.3:+9694736 | None:intergenic |
| TTGCTCTTCCGTAGTGTAAA+AGG | 0.235082 | 2.3:+9694670 | None:intergenic |
| TAAGAAGATTATCATGGGTT+TGG | 0.309907 | 2.3:-9694615 | MS.gene028868:CDS |
| AGACTACGGCACTGGTTCTC+TGG | 0.311612 | 2.3:-9692459 | MS.gene028868:CDS |
| AAAATAGTTAAAAGGATATC+TGG | 0.325214 | 2.3:+9692807 | None:intergenic |
| GCAAAAGCCACAAGGAGTTT+TGG | 0.329960 | 2.3:+9694583 | None:intergenic |
| TACATACGTAGGGGTGGATA+TGG | 0.332561 | 2.3:-9692524 | MS.gene028868:intron |
| TCAAATTCTTCTTGATTTCC+GGG | 0.354309 | 2.3:+9694737 | None:intergenic |
| TTACAAGAAGATGGAATAAC+TGG | 0.359475 | 2.3:+9692425 | None:intergenic |
| CAGTCAAAATCAACACGAAT+AGG | 0.364148 | 2.3:+9693622 | None:intergenic |
| GGTCAGAGTTCGAGTTCTTA+TGG | 0.369473 | 2.3:+9691239 | None:intergenic |
| ATATATAAGTGGGACTATAC+TGG | 0.380139 | 2.3:-9693653 | MS.gene028868:CDS |
| CGTCTCTGTATCTCTTCCTT+TGG | 0.404261 | 2.3:+9691326 | None:intergenic |
| ATTCCAGGACGGAAGACAAT+GGG | 0.430858 | 2.3:-9693596 | MS.gene028868:CDS |
| TGAAATTAAGAAGATTATCA+TGG | 0.431314 | 2.3:-9694621 | MS.gene028868:CDS |
| AGCTTACCGGTCTAGATTCA+TGG | 0.434428 | 2.3:+9691218 | None:intergenic |
| AGTCAAAATCAACACGAATA+GGG | 0.439721 | 2.3:+9693623 | None:intergenic |
| TCGCGGTCGTAGTGGTGGCC+AGG | 0.445048 | 2.3:-9693572 | MS.gene028868:intron |
| ACCTCCTCTACCATGCCTAT+AGG | 0.454914 | 2.3:+9691475 | None:intergenic |
| CTTCAACCACTGTTTACGTT+GGG | 0.455705 | 2.3:-9694700 | MS.gene028868:CDS |
| AACAATGGCGTTGTTATTCA+AGG | 0.461398 | 2.3:-9694886 | None:intergenic |
| GACTACGGCACTGGTTCTCT+GGG | 0.462057 | 2.3:-9692458 | MS.gene028868:CDS |
| AACAGTAACTTACAAGAAGA+TGG | 0.468317 | 2.3:+9692416 | None:intergenic |
| GACCCCATTGTCTTCCGTCC+TGG | 0.498975 | 2.3:+9693593 | None:intergenic |
| ATGGTCACGGTGGTTCCTAT+AGG | 0.509501 | 2.3:-9691490 | MS.gene028868:CDS |
| GGAAGATGATCGTAAAAGAC+GGG | 0.510144 | 2.3:-9690898 | MS.gene028868:CDS |
| ATATCAAGAATCACAAATGA+AGG | 0.517539 | 2.3:+9692763 | None:intergenic |
| TTAGGATCCGGCGAAGATCT+CGG | 0.517857 | 2.3:-9694780 | MS.gene028868:intron |
| GAAATTAAGAAGATTATCAT+GGG | 0.526031 | 2.3:-9694620 | MS.gene028868:CDS |
| GATGCTTGCAAATATATAAG+TGG | 0.526542 | 2.3:-9693664 | MS.gene028868:CDS |
| ACTTCAACCACTGTTTACGT+TGG | 0.539785 | 2.3:-9694701 | MS.gene028868:CDS |
| ATCCACGGTTTCGGGAGAGT+GGG | 0.541783 | 2.3:-9690938 | MS.gene028868:CDS |
| GACGGAAGACAATGGGGTCG+CGG | 0.546073 | 2.3:-9693589 | MS.gene028868:CDS |
| TCCTATAGGCATGGTAGAGG+AGG | 0.546339 | 2.3:-9691476 | MS.gene028868:intron |
| TGGGGATTCTGATGATGAGG+AGG | 0.550856 | 2.3:-9690919 | MS.gene028868:CDS |
| CATGGTGGTGGCCATGGTCA+CGG | 0.554994 | 2.3:-9691503 | MS.gene028868:CDS |
| TGGGGTCGCGGTCGTAGTGG+TGG | 0.558291 | 2.3:-9693577 | MS.gene028868:CDS |
| AATCCACGGTTTCGGGAGAG+TGG | 0.561885 | 2.3:-9690939 | MS.gene028868:CDS |
| GGTAGACATGGTGGTGGCCA+TGG | 0.565131 | 2.3:-9691509 | MS.gene028868:CDS |
| CACGGTGGTTCCTATAGGCA+TGG | 0.570531 | 2.3:-9691485 | MS.gene028868:CDS |
| GATTCCAGGACGGAAGACAA+TGG | 0.573376 | 2.3:-9693597 | MS.gene028868:CDS |
| TCCACGGTTTCGGGAGAGTG+GGG | 0.573957 | 2.3:-9690937 | MS.gene028868:CDS |
| CTCTGACCATGAATCTAGAC+CGG | 0.574575 | 2.3:-9691224 | MS.gene028868:intron |
| TAGGGGTGGATATGGAAAGT+TGG | 0.576388 | 2.3:-9692516 | MS.gene028868:CDS |
| AGAAAGAGTTAGAAGTACAA+AGG | 0.582268 | 2.3:-9692490 | MS.gene028868:CDS |
| CAAATTCTTCTTGATTTCCG+GGG | 0.585052 | 2.3:+9694738 | None:intergenic |
| ATGCTTGCAAATATATAAGT+GGG | 0.586515 | 2.3:-9693663 | MS.gene028868:CDS |
| GAGTGGGGATTCTGATGATG+AGG | 0.587331 | 2.3:-9690922 | MS.gene028868:CDS |
| CAAAGGCATCTTGTAGACTA+CGG | 0.592026 | 2.3:-9692473 | MS.gene028868:CDS |
| TATAGAGATAGAAGATTCCC+CGG | 0.593427 | 2.3:-9694755 | MS.gene028868:CDS |
| AATCTTGCAGATGGTAGACA+TGG | 0.594151 | 2.3:-9691521 | MS.gene028868:intron |
| TTGAGGGCTCGTGTGTGTAG+CGG | 0.595715 | 2.3:+9691299 | None:intergenic |
| GGTTCCTATAGGCATGGTAG+AGG | 0.598347 | 2.3:-9691479 | MS.gene028868:CDS |
| TCCCCACTCTCCCGAAACCG+TGG | 0.598648 | 2.3:+9690936 | None:intergenic |
| AGGAAGATGATCGTAAAAGA+CGG | 0.598691 | 2.3:-9690899 | MS.gene028868:CDS |
| CAATGGGGTCGCGGTCGTAG+TGG | 0.600530 | 2.3:-9693580 | MS.gene028868:CDS |
| TATAGGAACCACCGTGACCA+TGG | 0.602408 | 2.3:+9691492 | None:intergenic |
| TTGGCATTATAGATTACCAA+AGG | 0.609178 | 2.3:-9691342 | MS.gene028868:intron |
| CATCTTGTAGACTACGGCAC+TGG | 0.611982 | 2.3:-9692467 | MS.gene028868:CDS |
| CATCAGATCATGAATCTCGA+AGG | 0.626929 | 2.3:-9691270 | MS.gene028868:CDS |
| CTATACGCCGAGATCTTCGC+CGG | 0.631598 | 2.3:+9694773 | None:intergenic |
| TTTGACTGGGGATTCCAGGA+CGG | 0.649704 | 2.3:-9693607 | MS.gene028868:CDS |
| CAAGAAGATGGAATAACTGG+CGG | 0.652818 | 2.3:+9692428 | None:intergenic |
| AAGAACACCAAAACTCCTTG+TGG | 0.657938 | 2.3:-9694590 | MS.gene028868:CDS |
| GCAGATGGTAGACATGGTGG+TGG | 0.661120 | 2.3:-9691515 | MS.gene028868:intron |
| CTACTCTCGTGAAGATACTG+AGG | 0.661933 | 2.3:-9693686 | MS.gene028868:CDS |
| TTCCAGGACGGAAGACAATG+GGG | 0.677075 | 2.3:-9693595 | MS.gene028868:CDS |
| AAAACAAAGCAAAAGCCACA+AGG | 0.680638 | 2.3:+9694575 | None:intergenic |
| CATGTTCCCAACGTAAACAG+TGG | 0.704637 | 2.3:+9694694 | None:intergenic |
| GGTGGTGGCCATGGTCACGG+TGG | 0.716513 | 2.3:-9691500 | MS.gene028868:CDS |
| CTTGCAGATGGTAGACATGG+TGG | 0.716756 | 2.3:-9691518 | MS.gene028868:intron |
| GAAGATGATCGTAAAAGACG+GGG | 0.737966 | 2.3:-9690897 | MS.gene028868:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGAATATATAACATTA+TGG | + | chr2.3:9692586-9692605 | None:intergenic | 10.0% |
| !! | ATAAAAAAGTTAAAATAAGT+CGG | - | chr2.3:9691603-9691622 | MS.gene028868:intron | 10.0% |
| !! | ATTTATGAAAAATAGTTAAA+AGG | + | chr2.3:9692979-9692998 | None:intergenic | 10.0% |
| !!! | CAATTGATATTTTAAAAATT+AGG | + | chr2.3:9692696-9692715 | None:intergenic | 10.0% |
| !!! | TACTGTTTTTTATTTTTATA+TGG | - | chr2.3:9693375-9693394 | MS.gene028868:intron | 10.0% |
| !! | AAAAAATAATCAAATTGTCT+AGG | + | chr2.3:9692290-9692309 | None:intergenic | 15.0% |
| !! | AAATTAAGACAAATAATACT+TGG | + | chr2.3:9694796-9694815 | None:intergenic | 15.0% |
| !! | ACATAATACAATACAAAATT+GGG | + | chr2.3:9692836-9692855 | None:intergenic | 15.0% |
| !! | TAAAAAAGTTAAAATAAGTC+GGG | - | chr2.3:9691604-9691623 | MS.gene028868:intron | 15.0% |
| !! | TTAAGTTATTTATCCAAAAA+GGG | + | chr2.3:9691307-9691326 | None:intergenic | 15.0% |
| !! | TTTAATTAAATTTGTCTCTT+TGG | - | chr2.3:9694414-9694433 | MS.gene028868:intron | 15.0% |
| !!! | ACTTTTTTATGGAAATAATA+AGG | + | chr2.3:9691593-9691612 | None:intergenic | 15.0% |
| !!! | GACTTATTTTAACTTTTTTA+TGG | + | chr2.3:9691604-9691623 | None:intergenic | 15.0% |
| !!! | GTTTTTAATAACAAATTATG+TGG | - | chr2.3:9693440-9693459 | MS.gene028868:intron | 15.0% |
| !!! | TTTTACAACAAAATTACTTT+AGG | - | chr2.3:9693142-9693161 | MS.gene028868:intron | 15.0% |
| !! | AAAAAAGTTAAAATAAGTCG+GGG | - | chr2.3:9691605-9691624 | MS.gene028868:intron | 20.0% |
| !! | AAAATAGTTAAAAGGATATC+TGG | + | chr2.3:9692971-9692990 | None:intergenic | 20.0% |
| !! | AACAAAAAAAAAACAATGAG+AGG | + | chr2.3:9694139-9694158 | None:intergenic | 20.0% |
| !! | ATCTATTTGAATATTGTAGT+TGG | - | chr2.3:9691926-9691945 | MS.gene028868:intron | 20.0% |
| !! | ATTCACTTATGAAAATGTTT+GGG | + | chr2.3:9691738-9691757 | None:intergenic | 20.0% |
| !! | ATTTATTTGTTTGAACATGT+AGG | + | chr2.3:9693072-9693091 | None:intergenic | 20.0% |
| !! | CACATAATACAATACAAAAT+TGG | + | chr2.3:9692837-9692856 | None:intergenic | 20.0% |
| !! | CAGAAATTATAAAATGTAAC+AGG | + | chr2.3:9694185-9694204 | None:intergenic | 20.0% |
| !! | GAAATTAAGAAGATTATCAT+GGG | - | chr2.3:9691155-9691174 | MS.gene028868:intron | 20.0% |
| !! | GTTAAGTTATTTATCCAAAA+AGG | + | chr2.3:9691308-9691327 | None:intergenic | 20.0% |
| !! | TATTCACTTATGAAAATGTT+TGG | + | chr2.3:9691739-9691758 | None:intergenic | 20.0% |
| !! | TCATTCAATAAAAATCAAGT+AGG | + | chr2.3:9693477-9693496 | None:intergenic | 20.0% |
| !! | TGAAATAATAGTTTCTATAC+AGG | - | chr2.3:9693887-9693906 | MS.gene028868:intron | 20.0% |
| !! | TGAAATTAAGAAGATTATCA+TGG | - | chr2.3:9691154-9691173 | MS.gene028868:intron | 20.0% |
| !! | TGCTAAATCTTAAAAACTAT+GGG | + | chr2.3:9692803-9692822 | None:intergenic | 20.0% |
| !! | TTGTACAAATTAATGACTAA+GGG | + | chr2.3:9691801-9691820 | None:intergenic | 20.0% |
| !! | TTTATTTGTTTGAACATGTA+GGG | + | chr2.3:9693071-9693090 | None:intergenic | 20.0% |
| !! | TTTGTACAAATTAATGACTA+AGG | + | chr2.3:9691802-9691821 | None:intergenic | 20.0% |
| !!! | ACATTTTTGTAACAAGAATA+TGG | + | chr2.3:9694753-9694772 | None:intergenic | 20.0% |
| !!! | ACGTAGTTATTTTAATTTCT+AGG | - | chr2.3:9691269-9691288 | MS.gene028868:CDS | 20.0% |
| !!! | CTGTTACATTTTATAATTTC+TGG | - | chr2.3:9694183-9694202 | MS.gene028868:intron | 20.0% |
| !!! | GTTTAAATTTCTTTTCCTAA+TGG | - | chr2.3:9693746-9693765 | MS.gene028868:intron | 20.0% |
| !!! | TAAATCATTTGTAGTTTTGA+AGG | + | chr2.3:9694398-9694417 | None:intergenic | 20.0% |
| !!! | TTATTTGTCTTAATTTGATC+TGG | - | chr2.3:9694800-9694819 | MS.gene028868:intron | 20.0% |
| ! | AAAATAACCAAATTGTCTAG+TGG | + | chr2.3:9692436-9692455 | None:intergenic | 25.0% |
| ! | AACAATGTAAACATAGGTAT+GGG | + | chr2.3:9693561-9693580 | None:intergenic | 25.0% |
| ! | AGTTATAGAAAAATGTGAGA+AGG | - | chr2.3:9691886-9691905 | MS.gene028868:intron | 25.0% |
| ! | ATATCAAGAATCACAAATGA+AGG | + | chr2.3:9693015-9693034 | None:intergenic | 25.0% |
| ! | ATGAACTTTACATTTGATCA+AGG | - | chr2.3:9693041-9693060 | MS.gene028868:intron | 25.0% |
| ! | ATGCTTGCAAATATATAAGT+GGG | - | chr2.3:9692112-9692131 | MS.gene028868:intron | 25.0% |
| ! | ATTCATACTGCACAATAAAT+AGG | + | chr2.3:9693676-9693695 | None:intergenic | 25.0% |
| ! | CTGCTAAATCTTAAAAACTA+TGG | + | chr2.3:9692804-9692823 | None:intergenic | 25.0% |
| ! | TAACAATGTAAACATAGGTA+TGG | + | chr2.3:9693562-9693581 | None:intergenic | 25.0% |
| ! | TATGTTAGAAAGTCAATTGT+TGG | - | chr2.3:9693790-9693809 | MS.gene028868:intron | 25.0% |
| ! | TCAACTAACAATGTAAACAT+AGG | + | chr2.3:9693567-9693586 | None:intergenic | 25.0% |
| ! | TCTATTCTCTGCAAATTTAA+CGG | - | chr2.3:9694219-9694238 | MS.gene028868:intron | 25.0% |
| ! | TGAGAAAAAATGTTAGCAAA+TGG | - | chr2.3:9691505-9691524 | MS.gene028868:CDS | 25.0% |
| ! | TGTTAATTGGAGTGATTTAT+TGG | - | chr2.3:9691960-9691979 | MS.gene028868:intron | 25.0% |
| ! | TTCAAATTCTTCTTGATTTC+CGG | + | chr2.3:9691042-9691061 | None:intergenic | 25.0% |
| ! | TTTGAATATGAATGTCATTG+TGG | - | chr2.3:9693847-9693866 | MS.gene028868:intron | 25.0% |
| !! | AGATTCACTATGATTTTACT+TGG | - | chr2.3:9693097-9693116 | MS.gene028868:intron | 25.0% |
| !! | GCTTCTTTTATAAATTATCC+TGG | - | chr2.3:9691648-9691667 | MS.gene028868:intron | 25.0% |
| !! | TATGTTATTCTCTTTTCTGA+TGG | + | chr2.3:9692348-9692367 | None:intergenic | 25.0% |
| !!! | CTAGACAATTTGGTTATTTT+TGG | - | chr2.3:9692436-9692455 | MS.gene028868:CDS | 25.0% |
| !!! | GTCTTTGAATTTTAACCATT+AGG | + | chr2.3:9693764-9693783 | None:intergenic | 25.0% |
| !!! | TAGAACTGATTGATGATTTT+GGG | - | chr2.3:9692036-9692055 | MS.gene028868:intron | 25.0% |
| !!! | TAGTACTGATTGATGATTTT+GGG | - | chr2.3:9692000-9692019 | MS.gene028868:intron | 25.0% |
| !!! | TTAGAACTGATTGATGATTT+TGG | - | chr2.3:9692035-9692054 | MS.gene028868:intron | 25.0% |
| !!! | TTAGTACTGATTGATGATTT+TGG | - | chr2.3:9691999-9692018 | MS.gene028868:intron | 25.0% |
| AAAAAAAAACAATGAGAGGC+TGG | + | chr2.3:9694135-9694154 | None:intergenic | 30.0% | |
| AAAAACTATGGGATACTACA+CGG | + | chr2.3:9692792-9692811 | None:intergenic | 30.0% | |
| AAACCTTATCCCATTAAGTA+GGG | - | chr2.3:9692539-9692558 | MS.gene028868:intron | 30.0% | |
| AACAGTAACTTACAAGAAGA+TGG | + | chr2.3:9693362-9693381 | None:intergenic | 30.0% | |
| AATTGTCTTGATTGAAGAGT+TGG | - | chr2.3:9692711-9692730 | MS.gene028868:intron | 30.0% | |
| AATTTAAACCCTAAACGCTA+AGG | + | chr2.3:9693735-9693754 | None:intergenic | 30.0% | |
| AGTCAAAATCAACACGAATA+GGG | + | chr2.3:9692155-9692174 | None:intergenic | 30.0% | |
| AGTGCTTCTTAAAAAGTTGA+TGG | + | chr2.3:9694354-9694373 | None:intergenic | 30.0% | |
| AGTTTATAGCATAAGCACTT+AGG | - | chr2.3:9691332-9691351 | MS.gene028868:CDS | 30.0% | |
| ATAGAAAAATGTGAGAAGGA+AGG | - | chr2.3:9691890-9691909 | MS.gene028868:intron | 30.0% | |
| ATATATAAGTGGGACTATAC+TGG | - | chr2.3:9692122-9692141 | MS.gene028868:intron | 30.0% | |
| ATTATGAACATGTCATAAGC+TGG | - | chr2.3:9691699-9691718 | MS.gene028868:intron | 30.0% | |
| GATGCTTGCAAATATATAAG+TGG | - | chr2.3:9692111-9692130 | MS.gene028868:intron | 30.0% | |
| GGATGTTAGATAGTTGAAAA+AGG | + | chr2.3:9694164-9694183 | None:intergenic | 30.0% | |
| GTACACTATTCAACTCAATT+AGG | - | chr2.3:9690911-9690930 | MS.gene028868:CDS | 30.0% | |
| GTGAATATTGATCAGAGAAA+TGG | + | chr2.3:9694025-9694044 | None:intergenic | 30.0% | |
| GTGTAAATATGCAATACATG+AGG | - | chr2.3:9693601-9693620 | MS.gene028868:CDS | 30.0% | |
| TAAGAAGATTATCATGGGTT+TGG | - | chr2.3:9691160-9691179 | MS.gene028868:intron | 30.0% | |
| TAAGCTGTAAGCTCAAAATT+TGG | - | chr2.3:9691552-9691571 | MS.gene028868:intron | 30.0% | |
| TAATACTTGGATCAACAAGA+AGG | + | chr2.3:9694783-9694802 | None:intergenic | 30.0% | |
| TAGTTTACCACTAGACAATT+TGG | - | chr2.3:9692426-9692445 | MS.gene028868:intron | 30.0% | |
| TCAAATTCTTCTTGATTTCC+GGG | + | chr2.3:9691041-9691060 | None:intergenic | 30.0% | |
| TCAAATTGTCTAGGTAAACA+TGG | + | chr2.3:9692281-9692300 | None:intergenic | 30.0% | |
| TCCTTAATTCTACATACGTA+GGG | - | chr2.3:9693241-9693260 | MS.gene028868:intron | 30.0% | |
| TTACAAGAAGATGGAATAAC+TGG | + | chr2.3:9693353-9693372 | None:intergenic | 30.0% | |
| TTCCTTAATTCTACATACGT+AGG | - | chr2.3:9693240-9693259 | MS.gene028868:intron | 30.0% | |
| TTGGCATTATAGATTACCAA+AGG | - | chr2.3:9694433-9694452 | MS.gene028868:intron | 30.0% | |
| ! | AGAAAGAGTTAGAAGTACAA+AGG | - | chr2.3:9693285-9693304 | MS.gene028868:intron | 30.0% |
| ! | ATGATCTGATGTTCTTTTTG+AGG | + | chr2.3:9694496-9694515 | None:intergenic | 30.0% |
| ! | CAAATAGAAGCATAAGCTTT+CGG | + | chr2.3:9694689-9694708 | None:intergenic | 30.0% |
| ! | GGTGATAATGCATTGTTAAT+TGG | - | chr2.3:9691947-9691966 | MS.gene028868:intron | 30.0% |
| ! | TAATTTCTAGGTATTACCCT+AGG | - | chr2.3:9691281-9691300 | MS.gene028868:CDS | 30.0% |
| ! | TGATCTGATGTTCTTTTTGA+GGG | + | chr2.3:9694495-9694514 | None:intergenic | 30.0% |
| ! | TTAGCAGTGATAGAAGTTTT+AGG | + | chr2.3:9694723-9694742 | None:intergenic | 30.0% |
| ! | TTCTTCGTTGTGAATGTTTT+AGG | - | chr2.3:9690977-9690996 | MS.gene028868:intron | 30.0% |
| !! | AGCAATTTTAATCTTGCAGA+TGG | - | chr2.3:9694245-9694264 | MS.gene028868:intron | 30.0% |
| !! | TGTGCTATTGTCTTTTCTAA+TGG | + | chr2.3:9692497-9692516 | None:intergenic | 30.0% |
| !!! | CAACTTTTTAAGAAGCACTT+TGG | - | chr2.3:9694355-9694374 | MS.gene028868:intron | 30.0% |
| !!! | TATTCGTGTTGATTTTGACT+GGG | - | chr2.3:9692155-9692174 | MS.gene028868:intron | 30.0% |
| !!! | TCTTATGGCTTTGTTTTCTA+AGG | - | chr2.3:9692867-9692886 | MS.gene028868:intron | 30.0% |
| AAAACAAAGCAAAAGCCACA+AGG | + | chr2.3:9691203-9691222 | None:intergenic | 35.0% | |
| AAAAGATGCTTAGATTCCAC+AGG | + | chr2.3:9693931-9693950 | None:intergenic | 35.0% | |
| AAATAGTGTGACATAGCATG+TGG | - | chr2.3:9694643-9694662 | MS.gene028868:CDS | 35.0% | |
| AAATATCGCCTTAGCGTTTA+GGG | - | chr2.3:9693724-9693743 | MS.gene028868:intron | 35.0% | |
| AACAAGTAAAATGTTGAGCC+AGG | + | chr2.3:9693423-9693442 | None:intergenic | 35.0% | |
| ACAAGTAAAATGTTGAGCCA+GGG | + | chr2.3:9693422-9693441 | None:intergenic | 35.0% | |
| ACATGCTATGTCACACTATT+TGG | + | chr2.3:9694644-9694663 | None:intergenic | 35.0% | |
| ACTCGCTTGCAAATTACTTT+AGG | - | chr2.3:9693169-9693188 | MS.gene028868:intron | 35.0% | |
| AGAATGTGAGTGAAATGAAG+AGG | - | chr2.3:9691845-9691864 | MS.gene028868:intron | 35.0% | |
| AGGAAAAAAATCCACGGTTT+CGG | - | chr2.3:9694828-9694847 | MS.gene028868:intron | 35.0% | |
| AGGAAGATGATCGTAAAAGA+CGG | - | chr2.3:9694876-9694895 | MS.gene028868:intron | 35.0% | |
| ATGTGTGTTTCCAGTTCTTA+TGG | - | chr2.3:9692852-9692871 | MS.gene028868:intron | 35.0% | |
| ATTTATCCAAAAAGGGCCTA+GGG | + | chr2.3:9691300-9691319 | None:intergenic | 35.0% | |
| CAAACCTTATCCCATTAAGT+AGG | - | chr2.3:9692538-9692557 | MS.gene028868:intron | 35.0% | |
| CAAATTCTTCTTGATTTCCG+GGG | + | chr2.3:9691040-9691059 | None:intergenic | 35.0% | |
| CAGTCAAAATCAACACGAAT+AGG | + | chr2.3:9692156-9692175 | None:intergenic | 35.0% | |
| CCTTAATTCTACATACGTAG+GGG | - | chr2.3:9693242-9693261 | MS.gene028868:intron | 35.0% | |
| CTACTTAATGGGATAAGGTT+TGG | + | chr2.3:9692540-9692559 | None:intergenic | 35.0% | |
| CTATGTCACACTATTTGGTA+TGG | + | chr2.3:9694639-9694658 | None:intergenic | 35.0% | |
| GAAAACAAAGCCATAAGAAC+TGG | + | chr2.3:9692865-9692884 | None:intergenic | 35.0% | |
| GAATGTGAGTGAAATGAAGA+GGG | - | chr2.3:9691846-9691865 | MS.gene028868:intron | 35.0% | |
| GATAAGCGCTTATTATGGAT+AGG | - | chr2.3:9691457-9691476 | MS.gene028868:intron | 35.0% | |
| GCAATATATTGTCTTACCTG+TGG | - | chr2.3:9693912-9693931 | MS.gene028868:intron | 35.0% | |
| TAATCTCCATACTGTATGCT+AGG | - | chr2.3:9694070-9694089 | MS.gene028868:intron | 35.0% | |
| TAATGACTAAGGGTCTGTTT+GGG | + | chr2.3:9691791-9691810 | None:intergenic | 35.0% | |
| TAGAAAAGACAATAGCACAG+TGG | - | chr2.3:9692498-9692517 | MS.gene028868:CDS | 35.0% | |
| TATAGAGATAGAAGATTCCC+CGG | - | chr2.3:9691020-9691039 | MS.gene028868:intron | 35.0% | |
| TATTTATCCAAAAAGGGCCT+AGG | + | chr2.3:9691301-9691320 | None:intergenic | 35.0% | |
| TCAAGATTTGTAGAGCTTAC+CGG | + | chr2.3:9694573-9694592 | None:intergenic | 35.0% | |
| TTAATGACTAAGGGTCTGTT+TGG | + | chr2.3:9691792-9691811 | None:intergenic | 35.0% | |
| TTTCACTCACATTCTATGCA+AGG | + | chr2.3:9691840-9691859 | None:intergenic | 35.0% | |
| ! | AAATTATCCTGGAGAGCTTT+TGG | - | chr2.3:9691659-9691678 | MS.gene028868:intron | 35.0% |
| ! | ATACCTGAGAAATTAGCTTC+TGG | - | chr2.3:9691379-9691398 | MS.gene028868:intron | 35.0% |
| ! | GAACATGTCCTTTTACACTA+CGG | - | chr2.3:9691097-9691116 | MS.gene028868:intron | 35.0% |
| ! | TACCTGAGAAATTAGCTTCT+GGG | - | chr2.3:9691380-9691399 | MS.gene028868:intron | 35.0% |
| !! | AAGGCGATATTTGCTATTGA+AGG | + | chr2.3:9693716-9693735 | None:intergenic | 35.0% |
| !! | CTTGAAAGGGCATCAAATTA+TGG | - | chr2.3:9693513-9693532 | MS.gene028868:intron | 35.0% |
| !! | TCTAAGGTTGCTTTAGTTCT+TGG | - | chr2.3:9692883-9692902 | MS.gene028868:intron | 35.0% |
| !!! | ATTCGTGTTGATTTTGACTG+GGG | - | chr2.3:9692156-9692175 | MS.gene028868:intron | 35.0% |
| !!! | CTATTCGTGTTGATTTTGAC+TGG | - | chr2.3:9692154-9692173 | MS.gene028868:intron | 35.0% |
| !!! | GTTGTGAATGTTTTAGGATC+CGG | - | chr2.3:9690983-9691002 | MS.gene028868:intron | 35.0% |
| !!! | TATGAACTTTTTTCACGAGC+TGG | - | chr2.3:9691131-9691150 | MS.gene028868:intron | 35.0% |
| !!! | TGCTATTTTTTCGCCAAACA+GGG | + | chr2.3:9691358-9691377 | None:intergenic | 35.0% |
| AAGAACACCAAAACTCCTTG+TGG | - | chr2.3:9691185-9691204 | MS.gene028868:intron | 40.0% | |
| AATCTTGCAGATGGTAGACA+TGG | - | chr2.3:9694254-9694273 | MS.gene028868:intron | 40.0% | |
| ACACTATTTGGTATGGCAAC+TGG | + | chr2.3:9694632-9694651 | None:intergenic | 40.0% | |
| ACTTCAACCACTGTTTACGT+TGG | - | chr2.3:9691074-9691093 | MS.gene028868:intron | 40.0% | |
| AGCTGTCTTATAGCTGATAG+CGG | - | chr2.3:9691435-9691454 | MS.gene028868:intron | 40.0% | |
| ATGCACTAAAGTTGTTCACC+TGG | + | chr2.3:9692224-9692243 | None:intergenic | 40.0% | |
| ATGTAGCCAACCCTACTTAA+TGG | + | chr2.3:9692552-9692571 | None:intergenic | 40.0% | |
| CAAATATCGCCTTAGCGTTT+AGG | - | chr2.3:9693723-9693742 | MS.gene028868:intron | 40.0% | |
| CAACCCTACTTAATGGGATA+AGG | + | chr2.3:9692545-9692564 | None:intergenic | 40.0% | |
| CAAGAAGATGGAATAACTGG+CGG | + | chr2.3:9693350-9693369 | None:intergenic | 40.0% | |
| CAATAAATAGGATGCAGGAG+AGG | + | chr2.3:9693664-9693683 | None:intergenic | 40.0% | |
| CATCAGATCATGAATCTCGA+AGG | - | chr2.3:9694505-9694524 | MS.gene028868:intron | 40.0% | |
| CCCCTACGTATGTAGAATTA+AGG | + | chr2.3:9693245-9693264 | None:intergenic | 40.0% | |
| CCTGCAAACATTAACAGCAT+CGG | + | chr2.3:9692919-9692938 | None:intergenic | 40.0% | |
| CTGCACAATAAATAGGATGC+AGG | + | chr2.3:9693669-9693688 | None:intergenic | 40.0% | |
| CTTATCCCATTAAGTAGGGT+TGG | - | chr2.3:9692543-9692562 | MS.gene028868:intron | 40.0% | |
| CTTATTTCCAAAAGCTCTCC+AGG | + | chr2.3:9691669-9691688 | None:intergenic | 40.0% | |
| CTTCAACCACTGTTTACGTT+GGG | - | chr2.3:9691075-9691094 | MS.gene028868:intron | 40.0% | |
| GAAGATGATCGTAAAAGACG+GGG | - | chr2.3:9694878-9694897 | MS.gene028868:intron | 40.0% | |
| GGAAAAAAATCCACGGTTTC+GGG | - | chr2.3:9694829-9694848 | MS.gene028868:intron | 40.0% | |
| GGAAGATGATCGTAAAAGAC+GGG | - | chr2.3:9694877-9694896 | MS.gene028868:intron | 40.0% | |
| GTCATTGTGGATGACTAAGT+TGG | - | chr2.3:9693860-9693879 | MS.gene028868:intron | 40.0% | |
| GTTCATAAGACCAACACATG+TGG | + | chr2.3:9694105-9694124 | None:intergenic | 40.0% | |
| GTTGCCAGGAAAAAAATCCA+CGG | - | chr2.3:9694822-9694841 | MS.gene028868:intron | 40.0% | |
| TAATTCTACATACGTAGGGG+TGG | - | chr2.3:9693245-9693264 | MS.gene028868:intron | 40.0% | |
| TGTAGCCAACCCTACTTAAT+GGG | + | chr2.3:9692551-9692570 | None:intergenic | 40.0% | |
| TTGCTCTTCCGTAGTGTAAA+AGG | + | chr2.3:9691108-9691127 | None:intergenic | 40.0% | |
| ! | ACCTGAGAAATTAGCTTCTG+GGG | - | chr2.3:9691381-9691400 | MS.gene028868:intron | 40.0% |
| ! | CTTAATTTGATCTGGTTGCC+AGG | - | chr2.3:9694808-9694827 | MS.gene028868:intron | 40.0% |
| ! | TAGCGGATAAGCGCTTATTA+TGG | - | chr2.3:9691452-9691471 | MS.gene028868:intron | 40.0% |
| !! | AGCAACAACACTGACTTGAA+AGG | - | chr2.3:9693499-9693518 | MS.gene028868:intron | 40.0% |
| !! | ATTAAGTAGGGTTGGCTACA+TGG | - | chr2.3:9692551-9692570 | MS.gene028868:intron | 40.0% |
| !! | CAAAGGCATCTTGTAGACTA+CGG | - | chr2.3:9693302-9693321 | MS.gene028868:intron | 40.0% |
| !! | GCAACAACACTGACTTGAAA+GGG | - | chr2.3:9693500-9693519 | MS.gene028868:intron | 40.0% |
| !!! | CTGCTATTTTTTCGCCAAAC+AGG | + | chr2.3:9691359-9691378 | None:intergenic | 40.0% |
| !!! | GAAACCGTGGATTTTTTTCC+TGG | + | chr2.3:9694829-9694848 | None:intergenic | 40.0% |
| AGCTTACCGGTCTAGATTCA+TGG | + | chr2.3:9694560-9694579 | None:intergenic | 45.0% | |
| ATAAGCACTTAGGCCCTGTT+TGG | - | chr2.3:9691342-9691361 | MS.gene028868:intron | 45.0% | |
| ATTCCAGGACGGAAGACAAT+GGG | - | chr2.3:9692179-9692198 | MS.gene028868:intron | 45.0% | |
| CATGTTCCCAACGTAAACAG+TGG | + | chr2.3:9691084-9691103 | None:intergenic | 45.0% | |
| CCGATGCTGTTAATGTTTGC+AGG | - | chr2.3:9692916-9692935 | MS.gene028868:intron | 45.0% | |
| CGTCTCTGTATCTCTTCCTT+TGG | + | chr2.3:9694452-9694471 | None:intergenic | 45.0% | |
| CTACTCTCGTGAAGATACTG+AGG | - | chr2.3:9692089-9692108 | MS.gene028868:intron | 45.0% | |
| CTCTGACCATGAATCTAGAC+CGG | - | chr2.3:9694551-9694570 | MS.gene028868:intron | 45.0% | |
| CTTCAGCCTAGCATACAGTA+TGG | + | chr2.3:9694079-9694098 | None:intergenic | 45.0% | |
| TACATACGTAGGGGTGGATA+TGG | - | chr2.3:9693251-9693270 | MS.gene028868:intron | 45.0% | |
| TAGGGGTGGATATGGAAAGT+TGG | - | chr2.3:9693259-9693278 | MS.gene028868:intron | 45.0% | |
| TATGGATCTTCAGCTACTCG+TGG | - | chr2.3:9693393-9693412 | MS.gene028868:intron | 45.0% | |
| ! | ACTGAAAGAGTGCACATCGT+TGG | + | chr2.3:9693633-9693652 | None:intergenic | 45.0% |
| ! | CCTGAGAAATTAGCTTCTGG+GGG | - | chr2.3:9691382-9691401 | MS.gene028868:intron | 45.0% |
| ! | GCAAAAGCCACAAGGAGTTT+TGG | + | chr2.3:9691195-9691214 | None:intergenic | 45.0% |
| ! | GCTGAAGTATCCACATGTGT+TGG | - | chr2.3:9694092-9694111 | MS.gene028868:intron | 45.0% |
| ! | GGTCAGAGTTCGAGTTCTTA+TGG | + | chr2.3:9694539-9694558 | None:intergenic | 45.0% |
| ! | GTATTACCCTAGGCCCTTTT+TGG | - | chr2.3:9691291-9691310 | MS.gene028868:CDS | 45.0% |
| !!! | TGATTTTGACTGGGGATTCC+AGG | - | chr2.3:9692164-9692183 | MS.gene028868:intron | 45.0% |
| AATAGGATGCAGGAGAGGAC+AGG | + | chr2.3:9693659-9693678 | None:intergenic | 50.0% | |
| ACCTCCTCTACCATGCCTAT+AGG | + | chr2.3:9694303-9694322 | None:intergenic | 50.0% | |
| ATGGTCACGGTGGTTCCTAT+AGG | - | chr2.3:9694285-9694304 | MS.gene028868:intron | 50.0% | |
| CATCTTGTAGACTACGGCAC+TGG | - | chr2.3:9693308-9693327 | MS.gene028868:intron | 50.0% | |
| CCCCCAGAAGCTAATTTCTC+AGG | + | chr2.3:9691385-9691404 | None:intergenic | 50.0% | |
| CTTGCAGATGGTAGACATGG+TGG | - | chr2.3:9694257-9694276 | MS.gene028868:intron | 50.0% | |
| GATTCCAGGACGGAAGACAA+TGG | - | chr2.3:9692178-9692197 | MS.gene028868:intron | 50.0% | |
| GGTTCCTATAGGCATGGTAG+AGG | - | chr2.3:9694296-9694315 | MS.gene028868:intron | 50.0% | |
| GTGTGACATAGCATGTGGTG+TGG | - | chr2.3:9694648-9694667 | MS.gene028868:CDS | 50.0% | |
| TATAGGAACCACCGTGACCA+TGG | + | chr2.3:9694286-9694305 | None:intergenic | 50.0% | |
| TCCTATAGGCATGGTAGAGG+AGG | - | chr2.3:9694299-9694318 | MS.gene028868:intron | 50.0% | |
| TTAGGATCCGGCGAAGATCT+CGG | - | chr2.3:9690995-9691014 | MS.gene028868:intron | 50.0% | |
| TTCCAGGACGGAAGACAATG+GGG | - | chr2.3:9692180-9692199 | MS.gene028868:intron | 50.0% | |
| TTTGACTGGGGATTCCAGGA+CGG | - | chr2.3:9692168-9692187 | MS.gene028868:intron | 50.0% | |
| ! | GAAAGAGTGCACATCGTTGG+AGG | + | chr2.3:9693630-9693649 | None:intergenic | 50.0% |
| ! | GAGTGGGGATTCTGATGATG+AGG | - | chr2.3:9694853-9694872 | MS.gene028868:intron | 50.0% |
| ! | TGGGGATTCTGATGATGAGG+AGG | - | chr2.3:9694856-9694875 | MS.gene028868:intron | 50.0% |
| AATCCACGGTTTCGGGAGAG+TGG | - | chr2.3:9694836-9694855 | MS.gene028868:intron | 55.0% | |
| ATCCACGGTTTCGGGAGAGT+GGG | - | chr2.3:9694837-9694856 | MS.gene028868:intron | 55.0% | |
| CACGGTGGTTCCTATAGGCA+TGG | - | chr2.3:9694290-9694309 | MS.gene028868:intron | 55.0% | |
| CTATACGCCGAGATCTTCGC+CGG | + | chr2.3:9691005-9691024 | None:intergenic | 55.0% | |
| GCAGATGGTAGACATGGTGG+TGG | - | chr2.3:9694260-9694279 | MS.gene028868:intron | 55.0% | |
| TCTGGGGGATGAGCTCATAG+CGG | - | chr2.3:9691397-9691416 | MS.gene028868:intron | 55.0% | |
| TTGAGGGCTCGTGTGTGTAG+CGG | + | chr2.3:9694479-9694498 | None:intergenic | 55.0% | |
| ! | ACAATGAGAGGCTGGTTGCG+TGG | + | chr2.3:9694127-9694146 | None:intergenic | 55.0% |
| !! | AGACTACGGCACTGGTTCTC+TGG | - | chr2.3:9693316-9693335 | MS.gene028868:intron | 55.0% |
| !! | GACTACGGCACTGGTTCTCT+GGG | - | chr2.3:9693317-9693336 | MS.gene028868:intron | 55.0% |
| GACCCCATTGTCTTCCGTCC+TGG | + | chr2.3:9692185-9692204 | None:intergenic | 60.0% | |
| GACGGAAGACAATGGGGTCG+CGG | - | chr2.3:9692186-9692205 | MS.gene028868:intron | 60.0% | |
| TCAGCTACTCGTGGCAACCC+TGG | - | chr2.3:9693402-9693421 | MS.gene028868:intron | 60.0% | |
| TCCACGGTTTCGGGAGAGTG+GGG | - | chr2.3:9694838-9694857 | MS.gene028868:intron | 60.0% | |
| !! | CATGGTGGTGGCCATGGTCA+CGG | - | chr2.3:9694272-9694291 | MS.gene028868:intron | 60.0% |
| !! | GGTAGACATGGTGGTGGCCA+TGG | - | chr2.3:9694266-9694285 | MS.gene028868:intron | 60.0% |
| CAATGGGGTCGCGGTCGTAG+TGG | - | chr2.3:9692195-9692214 | MS.gene028868:intron | 65.0% | |
| TCCCCACTCTCCCGAAACCG+TGG | + | chr2.3:9694842-9694861 | None:intergenic | 65.0% | |
| TCGCGGTCGTAGTGGTGGCC+AGG | - | chr2.3:9692203-9692222 | MS.gene028868:intron | 70.0% | |
| TGGGGTCGCGGTCGTAGTGG+TGG | - | chr2.3:9692198-9692217 | MS.gene028868:intron | 70.0% | |
| ! | GGTGGTGGCCATGGTCACGG+TGG | - | chr2.3:9694275-9694294 | MS.gene028868:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 9690893 | 9694904 | 9690893 | ID=MS.gene028868 |
| chr2.3 | mRNA | 9690893 | 9694904 | 9690893 | ID=MS.gene028868.t1;Parent=MS.gene028868 |
| chr2.3 | exon | 9694887 | 9694904 | 9694887 | ID=MS.gene028868.t1.exon1;Parent=MS.gene028868.t1 |
| chr2.3 | CDS | 9694887 | 9694904 | 9694887 | ID=cds.MS.gene028868.t1;Parent=MS.gene028868.t1 |
| chr2.3 | exon | 9694575 | 9694798 | 9694575 | ID=MS.gene028868.t1.exon2;Parent=MS.gene028868.t1 |
| chr2.3 | CDS | 9694575 | 9694798 | 9694575 | ID=cds.MS.gene028868.t1;Parent=MS.gene028868.t1 |
| chr2.3 | exon | 9693573 | 9693711 | 9693573 | ID=MS.gene028868.t1.exon3;Parent=MS.gene028868.t1 |
| chr2.3 | CDS | 9693573 | 9693711 | 9693573 | ID=cds.MS.gene028868.t1;Parent=MS.gene028868.t1 |
| chr2.3 | exon | 9692777 | 9692859 | 9692777 | ID=MS.gene028868.t1.exon4;Parent=MS.gene028868.t1 |
| chr2.3 | CDS | 9692777 | 9692859 | 9692777 | ID=cds.MS.gene028868.t1;Parent=MS.gene028868.t1 |
| chr2.3 | exon | 9692429 | 9692535 | 9692429 | ID=MS.gene028868.t1.exon5;Parent=MS.gene028868.t1 |
| chr2.3 | CDS | 9692429 | 9692535 | 9692429 | ID=cds.MS.gene028868.t1;Parent=MS.gene028868.t1 |
| chr2.3 | exon | 9691477 | 9691533 | 9691477 | ID=MS.gene028868.t1.exon6;Parent=MS.gene028868.t1 |
| chr2.3 | CDS | 9691477 | 9691533 | 9691477 | ID=cds.MS.gene028868.t1;Parent=MS.gene028868.t1 |
| chr2.3 | exon | 9691225 | 9691352 | 9691225 | ID=MS.gene028868.t1.exon7;Parent=MS.gene028868.t1 |
| chr2.3 | CDS | 9691225 | 9691352 | 9691225 | ID=cds.MS.gene028868.t1;Parent=MS.gene028868.t1 |
| chr2.3 | exon | 9690893 | 9690967 | 9690893 | ID=MS.gene028868.t1.exon8;Parent=MS.gene028868.t1 |
| chr2.3 | CDS | 9690893 | 9690967 | 9690893 | ID=cds.MS.gene028868.t1;Parent=MS.gene028868.t1 |
| Gene Sequence |
| Protein sequence |