AlfalfaGEDB | MS.gene06672

M. sativa cultivar XinJiangDaYe / MS.gene06672

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06672.t1	XP_003602283.2	75	292	4	4	1	225	17	306	3.70E-84	321.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06672.t1	Q43385	29.8	252	113	14	17	225	66	296	3.5e-06	53.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06672.t1	G7J7H3	75.0	292	4	4	1	225	17	306	2.7e-84	321.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049142	MS.gene06672	0.835453	1.66E-56	-1.69E-46
MS.gene049254	MS.gene06672	0.817168	3.79E-52	-1.69E-46
MS.gene049350	MS.gene06672	0.806265	8.95E-50	-1.69E-46
MS.gene049672	MS.gene06672	0.801515	8.68E-49	-1.69E-46
MS.gene049711	MS.gene06672	0.83225	1.05E-55	-1.69E-46
MS.gene051719	MS.gene06672	0.808388	3.17E-50	-1.69E-46
MS.gene051744	MS.gene06672	0.810754	9.85E-51	-1.69E-46
MS.gene052000	MS.gene06672	0.803279	3.76E-49	-1.69E-46
MS.gene052519	MS.gene06672	0.829862	4.06E-55	-1.69E-46
MS.gene052773	MS.gene06672	0.824292	8.73E-54	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06672.t1	MTR_3g091820	73.630	292	8	5	1	225	17	306	6.42e-132	374
MS.gene06672.t1	MTR_8g027295	36.713	286	103	15	1	225	1	269	1.56e-32	119
MS.gene06672.t1	MTR_1g077600	32.946	258	91	13	14	216	30	260	3.27e-19	84.0
MS.gene06672.t1	MTR_1g077600	32.946	258	91	13	14	216	30	260	4.44e-19	84.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene06672.t1	AT3G61850	29.643	280	113	13	13	225	50	312	1.12e-22	94.0
MS.gene06672.t1	AT3G61850	29.643	280	113	13	13	225	62	324	2.03e-22	93.6
MS.gene06672.t1	AT3G61850	31.418	261	105	14	13	225	50	284	5.32e-21	89.0
MS.gene06672.t1	AT3G61850	31.418	261	105	14	13	225	50	284	5.32e-21	89.0
MS.gene06672.t1	AT3G61850	31.418	261	105	14	13	225	62	296	8.26e-21	88.6

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Find 48 sgRNAs with CRISPR-Local

Find 73 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCTTCTTCATCAAG+GGG	0.565168	3.3:+76662088	MS.gene06672:CDS
AACTGATGATCATCTACAAC+AGG	0.454576	3.3:-76662313	None:intergenic
AAGCTCAATGAATTTAGATA+TGG	0.438747	3.3:-76662017	None:intergenic
AAGGTGATTCTACTGGTTAT+TGG	0.303787	3.3:+76662401	MS.gene06672:CDS
AATAATCAAGAGGGTTCTGG+TGG	0.645196	3.3:+76662253	MS.gene06672:CDS
AATCAAGAGGGTTCTGGTGG+TGG	0.495161	3.3:+76662256	MS.gene06672:CDS
AATGGTTATGGTGGCTTGCA+AGG	0.516585	3.3:+76662226	MS.gene06672:CDS
AGAACTCAAGGTGATTCTAC+TGG	0.537114	3.3:+76662394	MS.gene06672:CDS
AGAAGGTATTGGACTGAAGG+TGG	0.592159	3.3:+76661749	MS.gene06672:intron
AGACAAAACTACAAGTGCTA+TGG	0.533697	3.3:+76662057	MS.gene06672:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGTGCAATGTATAATTCAAG+TGG	+	chr3.3:76662148-76662167	MS.gene06672:CDS	30.0%
ATTAATAATCAAGAGGGTTC+TGG	+	chr3.3:76662250-76662269	MS.gene06672:CDS	30.0%
CAAGGGATTAATAATCAAGA+GGG	+	chr3.3:76662244-76662263	MS.gene06672:CDS	30.0%
TAATTATCCTCAGTTGTTTG+TGG	-	chr3.3:76661992-76662011	None:intergenic	30.0%
AAAACTGCTTCTTCATCAAG+GGG	+	chr3.3:76662088-76662107	MS.gene06672:CDS	35.0%
AACTGATGATCATCTACAAC+AGG	-	chr3.3:76662316-76662335	None:intergenic	35.0%
AGACAAAACTACAAGTGCTA+TGG	+	chr3.3:76662057-76662076	MS.gene06672:CDS	35.0%
CAGCAACAAATTCCAAATAG+TGG	+	chr3.3:76662349-76662368	MS.gene06672:CDS	35.0%
CATCAGCAAAATAGAACTCA+AGG	+	chr3.3:76662382-76662401	MS.gene06672:CDS	35.0%
CTATGTTAGAGAGAAAAGCA+AGG	+	chr3.3:76661615-76661634	MS.gene06672:CDS	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3.3	gene	76661578	76662453	76661578	ID=MS.gene06672
chr3.3	mRNA	76661578	76662453	76661578	ID=MS.gene06672.t1;Parent=MS.gene06672
chr3.3	exon	76661578	76661669	76661578	ID=MS.gene06672.t1.exon1;Parent=MS.gene06672.t1
chr3.3	CDS	76661578	76661669	76661578	ID=cds.MS.gene06672.t1;Parent=MS.gene06672.t1
chr3.3	exon	76661751	76661794	76661751	ID=MS.gene06672.t1.exon2;Parent=MS.gene06672.t1
chr3.3	CDS	76661751	76661794	76661751	ID=cds.MS.gene06672.t1;Parent=MS.gene06672.t1
chr3.3	exon	76661912	76662453	76661912	ID=MS.gene06672.t1.exon3;Parent=MS.gene06672.t1
chr3.3	CDS	76661912	76662453	76661912	ID=cds.MS.gene06672.t1;Parent=MS.gene06672.t1

Gene Sequence

>MS.gene06672

ATGGATGGATCAACTTCAAATTCAAAACCAACACCTTCTATGTTAGAGAGAAAAGCAAGGCCACAAAAAGATCAAGCTTTAAACTGTCCAAGGTGCAATTCAACTAACACAAAATTCTGTTACTACAATAACTATAGCCTCTCACAACCAAGGTACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGTTCTTTAAGAAATGTTCCTGTAGGTGGTGGTTCAAGAAAAAACAAAAGATCAACCTCATCATCATCACCTTCAATCTCACAATCACAACCTCCATCATCAATAACAAAAAATATTATCATTAATCCTGATCTTGCTACAGCACAAAATAATTTCCCTCAATCTGCTTCTCAAAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACAAACAACTGAGGATAATTATAATACCATATCTAAATTCATTGAGCTTCCTTACACAACTGATCAAGACAAAACTACAAGTGCTATGGAGCTTCTGAAAACTGCTTCTTCATCAAGGGGTTTGAATTCTTTTATGCCTATGACTTTGTCTGAGTCTAGTGCAATGTATAATTCAAGTGGTTTTGCTTTGCAAGATTTTAAGCTTGGGGCTAATTTTGGTTTAGAAGGGTTTGAGAATGGTTATGGTGGCTTGCAAGGGATTAATAATCAAGAGGGTTCTGGTGGTGGTGGTGGTGGTGGTGGTGGTGCAAGGATGTTGTTTCCTGTTGTAGATGATCATCAGTTGAATAATAAGCAGCAGCAACAAATTCCAAATAGTGGTGAGTTTGAACATCAGCAAAATAGAACTCAAGGTGATTCTACTGGTTATTGGAATGGAATGTTCGGTGGAGGATCATGGTAG

Protein sequence

>MS.gene06672.t1

MDGSTSNSKPTPSMLERKARPQKDQALNCPRRYWTEGGSLRNVPVAQNNFPQSASQNPKIHQGQDLNLAYPPQTTEDNYNTISKFIELPYTTDQDKTTSAMELLKTASSSRGLNSFMPMTLSESSAMYNSSGFALQDFKLGANFGLEGFENGYGGLQGINNQEGSGGGGGGGGGARMLFPVVDDHQLNNKQQQQIPNSGEFEHQQNRTQGDSTGYWNGMFGGGSW