Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068047.t1 | XP_003608440.2 | 95.8 | 309 | 13 | 0 | 1 | 309 | 88 | 396 | 1.20E-162 | 582.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068047.t1 | Q0WUA3 | 70.0 | 297 | 88 | 1 | 4 | 300 | 87 | 382 | 3.7e-115 | 416.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068047.t1 | G7JCR2 | 95.8 | 309 | 13 | 0 | 1 | 309 | 88 | 396 | 8.9e-163 | 582.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049427 | MS.gene068047 | 0.820747 | 5.82E-53 | -1.69E-46 |
| MS.gene049491 | MS.gene068047 | 0.808855 | 2.52E-50 | -1.69E-46 |
| MS.gene050301 | MS.gene068047 | 0.80633 | 8.67E-50 | -1.69E-46 |
| MS.gene050397 | MS.gene068047 | 0.80389 | 2.81E-49 | -1.69E-46 |
| MS.gene050529 | MS.gene068047 | 0.825212 | 5.30E-54 | -1.69E-46 |
| MS.gene050812 | MS.gene068047 | 0.802733 | 4.88E-49 | -1.69E-46 |
| MS.gene052178 | MS.gene068047 | 0.815138 | 1.08E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene068047 | 0.834733 | 2.53E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene068047 | 0.827057 | 1.93E-54 | -1.69E-46 |
| MS.gene053103 | MS.gene068047 | 0.804663 | 1.94E-49 | -1.69E-46 |
| MS.gene053104 | MS.gene068047 | 0.812306 | 4.53E-51 | -1.69E-46 |
| MS.gene053107 | MS.gene068047 | 0.810558 | 1.09E-50 | -1.69E-46 |
| MS.gene053557 | MS.gene068047 | 0.926244 | 6.11E-91 | -1.69E-46 |
| MS.gene055277 | MS.gene068047 | 0.808045 | 3.76E-50 | -1.69E-46 |
| MS.gene055896 | MS.gene068047 | 0.80304 | 4.21E-49 | -1.69E-46 |
| MS.gene056410 | MS.gene068047 | 0.801531 | 8.62E-49 | -1.69E-46 |
| MS.gene056609 | MS.gene068047 | 0.813112 | 3.02E-51 | -1.69E-46 |
| MS.gene056897 | MS.gene068047 | 0.808177 | 3.52E-50 | -1.69E-46 |
| MS.gene057011 | MS.gene068047 | 0.808214 | 3.46E-50 | -1.69E-46 |
| MS.gene058660 | MS.gene068047 | 0.801576 | 8.44E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene068047 | 0.812002 | 5.28E-51 | -1.69E-46 |
| MS.gene059536 | MS.gene068047 | 0.815764 | 7.82E-52 | -1.69E-46 |
| MS.gene05959 | MS.gene068047 | 0.824501 | 7.80E-54 | -1.69E-46 |
| MS.gene059676 | MS.gene068047 | 0.809263 | 2.06E-50 | -1.69E-46 |
| MS.gene059688 | MS.gene068047 | 0.82155 | 3.80E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene068047 | 0.817583 | 3.06E-52 | -1.69E-46 |
| MS.gene059695 | MS.gene068047 | 0.810451 | 1.15E-50 | -1.69E-46 |
| MS.gene059894 | MS.gene068047 | 0.827997 | 1.15E-54 | -1.69E-46 |
| MS.gene059960 | MS.gene068047 | 0.834878 | 2.32E-56 | -1.69E-46 |
| MS.gene060804 | MS.gene068047 | 0.815908 | 7.27E-52 | -1.69E-46 |
| MS.gene060818 | MS.gene068047 | 0.81332 | 2.72E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene068047 | 0.800748 | 1.25E-48 | -1.69E-46 |
| MS.gene061051 | MS.gene068047 | -0.819675 | 1.03E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068047.t1 | MTR_4g094100 | 95.793 | 309 | 13 | 0 | 1 | 309 | 88 | 396 | 0.0 | 605 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene068047.t1 | AT1G60600 | 70.034 | 297 | 88 | 1 | 4 | 300 | 87 | 382 | 3.06e-143 | 409 |
| MS.gene068047.t1 | AT1G60600 | 69.097 | 288 | 88 | 1 | 13 | 300 | 1 | 287 | 2.51e-137 | 390 |
Find 63 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTGCTGCACTGGCTTT+TGG | 0.190762 | 4.3:+20662008 | MS.gene068047:CDS |
| ACCATTTCGGTTGAGCTATC+AGG | 0.266778 | 4.3:+20661090 | MS.gene068047:CDS |
| TGCCTTGCTCTCGGCTTCAT+TGG | 0.290145 | 4.3:+20660886 | MS.gene068047:CDS |
| TCGGCTTCATTGGGCTGACT+TGG | 0.299809 | 4.3:+20660896 | MS.gene068047:CDS |
| TGCTTTGTTTGGTGCTGCAC+TGG | 0.320529 | 4.3:+20662001 | MS.gene068047:CDS |
| CTTGTCGCTCTATGCTCTTT+TGG | 0.331194 | 4.3:+20661623 | MS.gene068047:CDS |
| TTTCAATGGAAACATTGATT+TGG | 0.343203 | 4.3:+20659693 | None:intergenic |
| TGCTGTAGTGTCCACCATTT+CGG | 0.343848 | 4.3:+20661077 | MS.gene068047:intron |
| CTCACTTGTGCAATTATTTG+CGG | 0.348757 | 4.3:+20660958 | MS.gene068047:CDS |
| TATTTGCGGCTATATATATC+AGG | 0.358239 | 4.3:+20660972 | MS.gene068047:CDS |
| GCCTTGCTCTCGGCTTCATT+GGG | 0.359448 | 4.3:+20660887 | MS.gene068047:CDS |
| CAGTAGTAAACTTGGTTAGA+AGG | 0.370534 | 4.3:+20660718 | MS.gene068047:CDS |
| CTTCAGTTCTTGTTATTACC+TGG | 0.372213 | 4.3:+20660546 | MS.gene068047:CDS |
| TGGATTGGTATTGGCTAGAA+TGG | 0.395431 | 4.3:+20662028 | MS.gene068047:CDS |
| AGTTGGAAAATTATCGCCTT+TGG | 0.398616 | 4.3:+20661462 | MS.gene068047:CDS |
| CTGTTCCACTCACGGGGAAA+TGG | 0.399263 | 4.3:-20661280 | None:intergenic |
| ACCAACGCAACAGAATAAAT+AGG | 0.402555 | 4.3:-20659731 | None:intergenic |
| TGGAGTTGACAAGAACAAAA+AGG | 0.403308 | 4.3:+20660692 | MS.gene068047:CDS |
| CACTTGCCTTGTGATTGTCT+TGG | 0.405318 | 4.3:-20661850 | None:intergenic |
| GTGAGGTTGCATGCTTTGTT+TGG | 0.412359 | 4.3:+20661990 | MS.gene068047:CDS |
| TTGAATTTGGAAAGCCGTAC+AGG | 0.451252 | 4.3:+20660841 | MS.gene068047:intron |
| CGGCTTCATTGGGCTGACTT+GGG | 0.456704 | 4.3:+20660897 | MS.gene068047:CDS |
| CCCTGATAGCTCAACCGAAA+TGG | 0.458150 | 4.3:-20661091 | None:intergenic |
| GCTGACTTGGGCCGCTATTG+AGG | 0.460129 | 4.3:+20660909 | MS.gene068047:CDS |
| CAATGGAAACATTGATTTGG+AGG | 0.468559 | 4.3:+20659696 | None:intergenic |
| CAACCTCACACAAAAGTACT+TGG | 0.469806 | 4.3:-20661976 | None:intergenic |
| TCGGTTGAGCTATCAGGGAC+TGG | 0.476574 | 4.3:+20661096 | MS.gene068047:CDS |
| GCTTACTTATGCCTTGCTCT+CGG | 0.479671 | 4.3:+20660877 | MS.gene068047:CDS |
| CGGTTGAGCTATCAGGGACT+GGG | 0.491309 | 4.3:+20661097 | MS.gene068047:CDS |
| GCCTATTTATTCTGTTGCGT+TGG | 0.500445 | 4.3:+20659730 | MS.gene068047:CDS |
| CTTTCAGCATCAATCCTCGT+TGG | 0.502661 | 4.3:+20661305 | MS.gene068047:CDS |
| CCATTTCGGTTGAGCTATCA+GGG | 0.502786 | 4.3:+20661091 | MS.gene068047:CDS |
| ACTTGGGCCGCTATTGAGGC+AGG | 0.514777 | 4.3:+20660913 | MS.gene068047:CDS |
| GAAAGAACTGTTCCACTCAC+GGG | 0.515944 | 4.3:-20661287 | None:intergenic |
| CTTGGACAAATTTAACTACC+AGG | 0.518543 | 4.3:-20661832 | None:intergenic |
| GTTAGACTTGGCACTGAAAG+AGG | 0.521855 | 4.3:+20661576 | MS.gene068047:CDS |
| GTGGATGGAGACGAAGAAGT+TGG | 0.522845 | 4.3:+20661445 | MS.gene068047:CDS |
| AATGGAAACATTGATTTGGA+GGG | 0.525358 | 4.3:+20659697 | None:intergenic |
| GTTGAGATGCTCACAGTAAG+AGG | 0.527629 | 4.3:-20659755 | None:intergenic |
| TTATTACCTGGCTCAACTTG+AGG | 0.528630 | 4.3:+20660558 | MS.gene068047:CDS |
| GACATTACCGATCGGAAACC+TGG | 0.531684 | 4.3:+20661814 | MS.gene068047:CDS |
| AATTTACCTCAAGTTGAGCC+AGG | 0.543221 | 4.3:-20660564 | None:intergenic |
| GCAGCAGCTTATTTACAGAC+AGG | 0.544262 | 4.3:+20660485 | MS.gene068047:CDS |
| AAAGGAATCAGTAGTAAACT+TGG | 0.548435 | 4.3:+20660710 | MS.gene068047:CDS |
| TGAAAGAACTGTTCCACTCA+CGG | 0.567193 | 4.3:-20661288 | None:intergenic |
| ATTTAGTACAAGGCAGTGCA+AGG | 0.570222 | 4.3:+20661170 | MS.gene068047:CDS |
| GCCCAATGAAGCCGAGAGCA+AGG | 0.576647 | 4.3:-20660888 | None:intergenic |
| TTGTCCATAACACAGGTGGA+TGG | 0.584733 | 4.3:+20661430 | MS.gene068047:intron |
| ACGAACCATTTCCCCGTGAG+TGG | 0.586635 | 4.3:+20661275 | MS.gene068047:CDS |
| TGATAGCTCAACCGAAATGG+TGG | 0.602707 | 4.3:-20661088 | None:intergenic |
| TTAACTACCAGGTTTCCGAT+CGG | 0.615133 | 4.3:-20661821 | None:intergenic |
| TTGAGATGCTCACAGTAAGA+GGG | 0.622428 | 4.3:-20659754 | None:intergenic |
| TGTGCATTGACATTACCGAT+CGG | 0.633142 | 4.3:+20661806 | MS.gene068047:CDS |
| CAGGTTTCCTGCCTCAATAG+CGG | 0.635356 | 4.3:-20660920 | None:intergenic |
| TGGCACTGAAAGAGGTGCAG+AGG | 0.639466 | 4.3:+20661584 | MS.gene068047:CDS |
| CAACAACAAAGATTCCTGTA+CGG | 0.642984 | 4.3:-20660855 | None:intergenic |
| AAAGAACTGTTCCACTCACG+GGG | 0.644363 | 4.3:-20661286 | None:intergenic |
| GCACTCACAATACAAGTGAG+AGG | 0.647555 | 4.3:-20661672 | None:intergenic |
| ATTTGTCCAAGACAATCACA+AGG | 0.685959 | 4.3:+20661844 | MS.gene068047:CDS |
| TCGGTAATGTCAATGCACAA+AGG | 0.686638 | 4.3:-20661802 | None:intergenic |
| TGAGAAACAATACTGAACGC+AGG | 0.690292 | 4.3:-20660939 | None:intergenic |
| GAGATGTTGTGAAGCCAACG+AGG | 0.738146 | 4.3:-20661319 | None:intergenic |
| CCAAATGCTGCAAAACACAG+AGG | 0.746304 | 4.3:-20661124 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTTCTTATTTTTTTTTC+AGG | + | chr4.3:20661554-20661573 | MS.gene068047:intron | 10.0% |
| !! | GTTATAATATTTACTATTCA+TGG | + | chr4.3:20661217-20661236 | MS.gene068047:intron | 15.0% |
| !! | TAATTGGAACTAAAAAATAA+CGG | - | chr4.3:20661377-20661396 | None:intergenic | 15.0% |
| !!! | GTTCTTTTTATATTAAAACT+AGG | + | chr4.3:20661917-20661936 | MS.gene068047:intron | 15.0% |
| !!! | TAAATGCTATTTTGTTTTAT+TGG | + | chr4.3:20660520-20660539 | MS.gene068047:CDS | 15.0% |
| !! | AATATTATAACTCTGTAGTT+AGG | - | chr4.3:20661208-20661227 | None:intergenic | 20.0% |
| !! | TTAATTGTTAAATTCAGCAT+AGG | + | chr4.3:20659794-20659813 | MS.gene068047:intron | 20.0% |
| !! | TTTAACATTAAGATAGGAAA+AGG | - | chr4.3:20660293-20660312 | None:intergenic | 20.0% |
| !!! | AATGTATTGGTATAACAAAT+AGG | + | chr4.3:20660454-20660473 | MS.gene068047:intron | 20.0% |
| !!! | ATACTGATAGTTTTAAATTG+CGG | - | chr4.3:20660009-20660028 | None:intergenic | 20.0% |
| !!! | TAATCTTTTGGTTATGAATA+TGG | + | chr4.3:20661768-20661787 | MS.gene068047:intron | 20.0% |
| ! | AACGAGTTTAACATTAAGAT+AGG | - | chr4.3:20660299-20660318 | None:intergenic | 25.0% |
| ! | AAGATTAAATCATAAGTGCA+TGG | - | chr4.3:20661755-20661774 | None:intergenic | 25.0% |
| ! | ATACCCTATTTGAATGAAAT+TGG | + | chr4.3:20660084-20660103 | MS.gene068047:intron | 25.0% |
| ! | CCTATCATGCAATAAAAAAT+TGG | - | chr4.3:20660352-20660371 | None:intergenic | 25.0% |
| ! | GTGTTATGGACAAAATAAAA+AGG | - | chr4.3:20661423-20661442 | None:intergenic | 25.0% |
| ! | TACCCTATTTGAATGAAATT+GGG | + | chr4.3:20660085-20660104 | MS.gene068047:intron | 25.0% |
| ! | TACTAAATAAAAAGCAGTAG+TGG | - | chr4.3:20661158-20661177 | None:intergenic | 25.0% |
| ! | TAGACTCTCTCATAAATATA+GGG | - | chr4.3:20660434-20660453 | None:intergenic | 25.0% |
| ! | TATTGGTATAACAAATAGGT+AGG | + | chr4.3:20660458-20660477 | MS.gene068047:intron | 25.0% |
| ! | TTAGACTCTCTCATAAATAT+AGG | - | chr4.3:20660435-20660454 | None:intergenic | 25.0% |
| ! | TTTATTGACATGTAGATGTA+GGG | + | chr4.3:20660123-20660142 | MS.gene068047:intron | 25.0% |
| !! | AGTTTGAAACCTTTATATTG+TGG | + | chr4.3:20659956-20659975 | MS.gene068047:intron | 25.0% |
| !! | GCACTTATGATTTAATCTTT+TGG | + | chr4.3:20661756-20661775 | MS.gene068047:intron | 25.0% |
| !! | TTTTATTGACATGTAGATGT+AGG | + | chr4.3:20660122-20660141 | MS.gene068047:intron | 25.0% |
| !!! | ACTGCTTTTTATTTAGTACA+AGG | + | chr4.3:20661160-20661179 | MS.gene068047:CDS | 25.0% |
| !!! | CCAATTTTTTATTGCATGAT+AGG | + | chr4.3:20660349-20660368 | MS.gene068047:intron | 25.0% |
| !!! | TGTTTTCATTTTGGAATCAA+TGG | + | chr4.3:20660612-20660631 | MS.gene068047:intron | 25.0% |
| !!! | TTTTATTTTGTCCATAACAC+AGG | + | chr4.3:20661423-20661442 | MS.gene068047:intron | 25.0% |
| !!! | TTTTTTTTTCAGGTTAGACT+TGG | + | chr4.3:20661564-20661583 | MS.gene068047:intron | 25.0% |
| AAAGGAATCAGTAGTAAACT+TGG | + | chr4.3:20660710-20660729 | MS.gene068047:CDS | 30.0% | |
| AAAGGTGGGATAAATAATTG+AGG | - | chr4.3:20660275-20660294 | None:intergenic | 30.0% | |
| AACAAGATTATGATATCAGC+AGG | - | chr4.3:20661006-20661025 | None:intergenic | 30.0% | |
| AACATTAAGATAGGAAAAGG+TGG | - | chr4.3:20660290-20660309 | None:intergenic | 30.0% | |
| ACATTAAGATAGGAAAAGGT+GGG | - | chr4.3:20660289-20660308 | None:intergenic | 30.0% | |
| ACCCTATTTGAATGAAATTG+GGG | + | chr4.3:20660086-20660105 | MS.gene068047:intron | 30.0% | |
| AGAAAAGTTATGTAGAAGGA+AGG | + | chr4.3:20660208-20660227 | MS.gene068047:intron | 30.0% | |
| ATGAGAGAGTCTAAATGTAT+TGG | + | chr4.3:20660441-20660460 | MS.gene068047:intron | 30.0% | |
| CAAAAACAAAACTGTAAGAC+TGG | - | chr4.3:20660400-20660419 | None:intergenic | 30.0% | |
| TATTTGCGGCTATATATATC+AGG | + | chr4.3:20660972-20660991 | MS.gene068047:CDS | 30.0% | |
| TCACATTTCTAAGTTTGAGT+TGG | - | chr4.3:20660047-20660066 | None:intergenic | 30.0% | |
| TTATTGACATGTAGATGTAG+GGG | + | chr4.3:20660124-20660143 | MS.gene068047:intron | 30.0% | |
| ! | AAGGAAGGAACTGTATTTTA+AGG | + | chr4.3:20660223-20660242 | MS.gene068047:intron | 30.0% |
| ! | GCTAGCTATTGTTTTCATTT+TGG | + | chr4.3:20660603-20660622 | MS.gene068047:intron | 30.0% |
| ! | GGACAAAGATAAGATTTTCA+TGG | + | chr4.3:20661953-20661972 | MS.gene068047:intron | 30.0% |
| ! | TCCTTCTACATAACTTTTCT+TGG | - | chr4.3:20660208-20660227 | None:intergenic | 30.0% |
| ! | TTTTCATTACCTTCGGATTA+AGG | + | chr4.3:20660182-20660201 | MS.gene068047:intron | 30.0% |
| AATGTTAAACTCGTTGCCAT+AGG | + | chr4.3:20660304-20660323 | MS.gene068047:intron | 35.0% | |
| ACCAACGCAACAGAATAAAT+AGG | - | chr4.3:20659734-20659753 | None:intergenic | 35.0% | |
| ACCCCCAATTTCATTCAAAT+AGG | - | chr4.3:20660091-20660110 | None:intergenic | 35.0% | |
| AGTTGGAAAATTATCGCCTT+TGG | + | chr4.3:20661462-20661481 | MS.gene068047:CDS | 35.0% | |
| ATTTGTCCAAGACAATCACA+AGG | + | chr4.3:20661844-20661863 | MS.gene068047:CDS | 35.0% | |
| CAACAACAAAGATTCCTGTA+CGG | - | chr4.3:20660858-20660877 | None:intergenic | 35.0% | |
| CAGTAGTAAACTTGGTTAGA+AGG | + | chr4.3:20660718-20660737 | MS.gene068047:CDS | 35.0% | |
| CCCCCAATTTCATTCAAATA+GGG | - | chr4.3:20660090-20660109 | None:intergenic | 35.0% | |
| CCCTATTTGAATGAAATTGG+GGG | + | chr4.3:20660087-20660106 | MS.gene068047:intron | 35.0% | |
| CTAGTTCATGTACATACCTA+TGG | - | chr4.3:20660323-20660342 | None:intergenic | 35.0% | |
| CTCACTTGTGCAATTATTTG+CGG | + | chr4.3:20660958-20660977 | MS.gene068047:CDS | 35.0% | |
| CTTGGACAAATTTAACTACC+AGG | - | chr4.3:20661835-20661854 | None:intergenic | 35.0% | |
| GATGAAAGTGACTGCAAAAA+AGG | - | chr4.3:20661349-20661368 | None:intergenic | 35.0% | |
| GCCAAGAAAAGTTATGTAGA+AGG | + | chr4.3:20660204-20660223 | MS.gene068047:intron | 35.0% | |
| TAAAAAGCAGTAGTGGCAAA+AGG | - | chr4.3:20661151-20661170 | None:intergenic | 35.0% | |
| TAAAAAGGTCACCAACTTGA+AGG | - | chr4.3:20661408-20661427 | None:intergenic | 35.0% | |
| TAGCAAAGTGTATCTACCAA+AGG | - | chr4.3:20661481-20661500 | None:intergenic | 35.0% | |
| TCTGCAGTTTCATATGGTTA+TGG | + | chr4.3:20660642-20660661 | MS.gene068047:intron | 35.0% | |
| TGGAGTTGACAAGAACAAAA+AGG | + | chr4.3:20660692-20660711 | MS.gene068047:CDS | 35.0% | |
| TTTCTTCCTCGTGTTGAATT+TGG | + | chr4.3:20660828-20660847 | MS.gene068047:intron | 35.0% | |
| ! | CCTGAACTTTTCATTACCTT+CGG | + | chr4.3:20660175-20660194 | MS.gene068047:intron | 35.0% |
| ! | TATTTTGTCCATAACACAGG+TGG | + | chr4.3:20661426-20661445 | MS.gene068047:intron | 35.0% |
| !! | CTTCAGTTCTTGTTATTACC+TGG | + | chr4.3:20660546-20660565 | MS.gene068047:CDS | 35.0% |
| !! | CTTGAAGGTACTCTTGTAAT+TGG | - | chr4.3:20661393-20661412 | None:intergenic | 35.0% |
| !! | GACGTTTATGATTTTGACAC+TGG | + | chr4.3:20660672-20660691 | MS.gene068047:CDS | 35.0% |
| !! | TATGCTCTTTTGGTTGCTTT+TGG | + | chr4.3:20661633-20661652 | MS.gene068047:CDS | 35.0% |
| !! | TTACAAGAGTACCTTCAAGT+TGG | + | chr4.3:20661394-20661413 | MS.gene068047:intron | 35.0% |
| !! | TTTTTGCAGTCACTTTCATC+AGG | + | chr4.3:20661349-20661368 | MS.gene068047:CDS | 35.0% |
| ACATGTAGATGTAGGGGATA+AGG | + | chr4.3:20660130-20660149 | MS.gene068047:intron | 40.0% | |
| AGCAACTCTGCAGTTTCATA+TGG | + | chr4.3:20660636-20660655 | MS.gene068047:intron | 40.0% | |
| ATTTAGTACAAGGCAGTGCA+AGG | + | chr4.3:20661170-20661189 | MS.gene068047:CDS | 40.0% | |
| CCGAAGGTAATGAAAAGTTC+AGG | - | chr4.3:20660178-20660197 | None:intergenic | 40.0% | |
| GCCTATTTATTCTGTTGCGT+TGG | + | chr4.3:20659730-20659749 | MS.gene068047:CDS | 40.0% | |
| GGATTGGAGCCACAATATAA+AGG | - | chr4.3:20659968-20659987 | None:intergenic | 40.0% | |
| TCGGTAATGTCAATGCACAA+AGG | - | chr4.3:20661805-20661824 | None:intergenic | 40.0% | |
| TGAAAGAACTGTTCCACTCA+CGG | - | chr4.3:20661291-20661310 | None:intergenic | 40.0% | |
| TGAGAAACAATACTGAACGC+AGG | - | chr4.3:20660942-20660961 | None:intergenic | 40.0% | |
| TGCAGCTGTAATTACAGTTC+TGG | + | chr4.3:20659930-20659949 | MS.gene068047:intron | 40.0% | |
| TTAAACCGCACTTGAAGGAT+TGG | - | chr4.3:20659984-20660003 | None:intergenic | 40.0% | |
| TTAACTACCAGGTTTCCGAT+CGG | - | chr4.3:20661824-20661843 | None:intergenic | 40.0% | |
| TTATTACCTGGCTCAACTTG+AGG | + | chr4.3:20660558-20660577 | MS.gene068047:CDS | 40.0% | |
| TTGAATTTGGAAAGCCGTAC+AGG | + | chr4.3:20660841-20660860 | MS.gene068047:intron | 40.0% | |
| TTGAGATGCTCACAGTAAGA+GGG | - | chr4.3:20659757-20659776 | None:intergenic | 40.0% | |
| TTGATCCTTATCTCATACCC+AGG | - | chr4.3:20659831-20659850 | None:intergenic | 40.0% | |
| ! | AAACTAGGTTGTGTTGTTGC+AGG | + | chr4.3:20661932-20661951 | MS.gene068047:intron | 40.0% |
| ! | TCGCGAGTATAGTTGCTATT+TGG | + | chr4.3:20661728-20661747 | MS.gene068047:intron | 40.0% |
| ! | TGTGCATTGACATTACCGAT+CGG | + | chr4.3:20661806-20661825 | MS.gene068047:CDS | 40.0% |
| !! | AATTTACCTCAAGTTGAGCC+AGG | - | chr4.3:20660567-20660586 | None:intergenic | 40.0% |
| !! | CAACCTCACACAAAAGTACT+TGG | - | chr4.3:20661979-20661998 | None:intergenic | 40.0% |
| !! | TGGATTGGTATTGGCTAGAA+TGG | + | chr4.3:20662028-20662047 | MS.gene068047:CDS | 40.0% |
| !!! | ACTGGCTTTTGGATTGGTAT+TGG | + | chr4.3:20662019-20662038 | MS.gene068047:CDS | 40.0% |
| !!! | TTTTCTTGGCCTTAATCCGA+AGG | - | chr4.3:20660194-20660213 | None:intergenic | 40.0% |
| AAAGAACTGTTCCACTCACG+GGG | - | chr4.3:20661289-20661308 | None:intergenic | 45.0% | |
| ACCATTTCGGTTGAGCTATC+AGG | + | chr4.3:20661090-20661109 | MS.gene068047:CDS | 45.0% | |
| ATGAAATTGGGGGTCAGAGT+AGG | + | chr4.3:20660097-20660116 | MS.gene068047:intron | 45.0% | |
| CACTTGCCTTGTGATTGTCT+TGG | - | chr4.3:20661853-20661872 | None:intergenic | 45.0% | |
| CATAGGTTCATGTGATGCCT+GGG | + | chr4.3:20659811-20659830 | MS.gene068047:intron | 45.0% | |
| CCAAATGCTGCAAAACACAG+AGG | - | chr4.3:20661127-20661146 | None:intergenic | 45.0% | |
| CCATTTCGGTTGAGCTATCA+GGG | + | chr4.3:20661091-20661110 | MS.gene068047:CDS | 45.0% | |
| CTTTCAGCATCAATCCTCGT+TGG | + | chr4.3:20661305-20661324 | MS.gene068047:CDS | 45.0% | |
| GAAAGAACTGTTCCACTCAC+GGG | - | chr4.3:20661290-20661309 | None:intergenic | 45.0% | |
| GCAACTATACTCGCGAAGAA+AGG | - | chr4.3:20661724-20661743 | None:intergenic | 45.0% | |
| GCACTCACAATACAAGTGAG+AGG | - | chr4.3:20661675-20661694 | None:intergenic | 45.0% | |
| GCAGCAGCTTATTTACAGAC+AGG | + | chr4.3:20660485-20660504 | MS.gene068047:CDS | 45.0% | |
| GCTTACTTATGCCTTGCTCT+CGG | + | chr4.3:20660877-20660896 | MS.gene068047:CDS | 45.0% | |
| GGCTTTCCAAATTCAACACG+AGG | - | chr4.3:20660837-20660856 | None:intergenic | 45.0% | |
| GTTGAGATGCTCACAGTAAG+AGG | - | chr4.3:20659758-20659777 | None:intergenic | 45.0% | |
| TGATAGCTCAACCGAAATGG+TGG | - | chr4.3:20661091-20661110 | None:intergenic | 45.0% | |
| TGATGCCTGGGTATGAGATA+AGG | + | chr4.3:20659823-20659842 | MS.gene068047:intron | 45.0% | |
| TGCTGTAGTGTCCACCATTT+CGG | + | chr4.3:20661077-20661096 | MS.gene068047:intron | 45.0% | |
| TTGTCCATAACACAGGTGGA+TGG | + | chr4.3:20661430-20661449 | MS.gene068047:intron | 45.0% | |
| ! | CCTCTGTGTTTTGCAGCATT+TGG | + | chr4.3:20661124-20661143 | MS.gene068047:CDS | 45.0% |
| ! | CTTGTCGCTCTATGCTCTTT+TGG | + | chr4.3:20661623-20661642 | MS.gene068047:CDS | 45.0% |
| ! | GTGAGGTTGCATGCTTTGTT+TGG | + | chr4.3:20661990-20662009 | MS.gene068047:CDS | 45.0% |
| ! | GTTAGACTTGGCACTGAAAG+AGG | + | chr4.3:20661576-20661595 | MS.gene068047:CDS | 45.0% |
| ! | TGGCCAAGTACTTTTGTGTG+AGG | + | chr4.3:20661973-20661992 | MS.gene068047:CDS | 45.0% |
| !!! | GGTTGCTTTTGGTCTAAGCA+AGG | + | chr4.3:20661644-20661663 | MS.gene068047:CDS | 45.0% |
| CAGGTTTCCTGCCTCAATAG+CGG | - | chr4.3:20660923-20660942 | None:intergenic | 50.0% | |
| CCCTGATAGCTCAACCGAAA+TGG | - | chr4.3:20661094-20661113 | None:intergenic | 50.0% | |
| CGGTCTTAAACCGCACTTGA+AGG | - | chr4.3:20659989-20660008 | None:intergenic | 50.0% | |
| GACATTACCGATCGGAAACC+TGG | + | chr4.3:20661814-20661833 | MS.gene068047:CDS | 50.0% | |
| GAGATGTTGTGAAGCCAACG+AGG | - | chr4.3:20661322-20661341 | None:intergenic | 50.0% | |
| GCATAGGTTCATGTGATGCC+TGG | + | chr4.3:20659810-20659829 | MS.gene068047:intron | 50.0% | |
| GTCTCCATCCACCTGTGTTA+TGG | - | chr4.3:20661437-20661456 | None:intergenic | 50.0% | |
| GTGGATGGAGACGAAGAAGT+TGG | + | chr4.3:20661445-20661464 | MS.gene068047:CDS | 50.0% | |
| TGGCTCCAATCCTTCAAGTG+CGG | + | chr4.3:20659976-20659995 | MS.gene068047:intron | 50.0% | |
| !! | TGCTTTGTTTGGTGCTGCAC+TGG | + | chr4.3:20662001-20662020 | MS.gene068047:CDS | 50.0% |
| !!! | TGCTGCACTGGCTTTTGGAT+TGG | + | chr4.3:20662013-20662032 | MS.gene068047:CDS | 50.0% |
| !!! | TTTGGTGCTGCACTGGCTTT+TGG | + | chr4.3:20662008-20662027 | MS.gene068047:CDS | 50.0% |
| ACGAACCATTTCCCCGTGAG+TGG | + | chr4.3:20661275-20661294 | MS.gene068047:CDS | 55.0% | |
| CGGTTGAGCTATCAGGGACT+GGG | + | chr4.3:20661097-20661116 | MS.gene068047:CDS | 55.0% | |
| CTGTTCCACTCACGGGGAAA+TGG | - | chr4.3:20661283-20661302 | None:intergenic | 55.0% | |
| GCCTTGCTCTCGGCTTCATT+GGG | + | chr4.3:20660887-20660906 | MS.gene068047:CDS | 55.0% | |
| TCGGCTTCATTGGGCTGACT+TGG | + | chr4.3:20660896-20660915 | MS.gene068047:CDS | 55.0% | |
| TCGGTTGAGCTATCAGGGAC+TGG | + | chr4.3:20661096-20661115 | MS.gene068047:CDS | 55.0% | |
| TGCCTTGCTCTCGGCTTCAT+TGG | + | chr4.3:20660886-20660905 | MS.gene068047:CDS | 55.0% | |
| ! | CGGCTTCATTGGGCTGACTT+GGG | + | chr4.3:20660897-20660916 | MS.gene068047:CDS | 55.0% |
| ! | TGGCACTGAAAGAGGTGCAG+AGG | + | chr4.3:20661584-20661603 | MS.gene068047:CDS | 55.0% |
| ACTTGGGCCGCTATTGAGGC+AGG | + | chr4.3:20660913-20660932 | MS.gene068047:CDS | 60.0% | |
| GCCCAATGAAGCCGAGAGCA+AGG | - | chr4.3:20660891-20660910 | None:intergenic | 60.0% | |
| !! | GCTGACTTGGGCCGCTATTG+AGG | + | chr4.3:20660909-20660928 | MS.gene068047:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 20659698 | 20662076 | 20659698 | ID=MS.gene068047 |
| chr4.3 | mRNA | 20659698 | 20662076 | 20659698 | ID=MS.gene068047.t1;Parent=MS.gene068047 |
| chr4.3 | exon | 20659698 | 20659763 | 20659698 | ID=MS.gene068047.t1.exon1;Parent=MS.gene068047.t1 |
| chr4.3 | CDS | 20659698 | 20659763 | 20659698 | ID=cds.MS.gene068047.t1;Parent=MS.gene068047.t1 |
| chr4.3 | exon | 20660476 | 20660579 | 20660476 | ID=MS.gene068047.t1.exon2;Parent=MS.gene068047.t1 |
| chr4.3 | CDS | 20660476 | 20660579 | 20660476 | ID=cds.MS.gene068047.t1;Parent=MS.gene068047.t1 |
| chr4.3 | exon | 20660668 | 20660739 | 20660668 | ID=MS.gene068047.t1.exon3;Parent=MS.gene068047.t1 |
| chr4.3 | CDS | 20660668 | 20660739 | 20660668 | ID=cds.MS.gene068047.t1;Parent=MS.gene068047.t1 |
| chr4.3 | exon | 20660855 | 20660993 | 20660855 | ID=MS.gene068047.t1.exon4;Parent=MS.gene068047.t1 |
| chr4.3 | CDS | 20660855 | 20660993 | 20660855 | ID=cds.MS.gene068047.t1;Parent=MS.gene068047.t1 |
| chr4.3 | exon | 20661085 | 20661191 | 20661085 | ID=MS.gene068047.t1.exon5;Parent=MS.gene068047.t1 |
| chr4.3 | CDS | 20661085 | 20661191 | 20661085 | ID=cds.MS.gene068047.t1;Parent=MS.gene068047.t1 |
| chr4.3 | exon | 20661268 | 20661370 | 20661268 | ID=MS.gene068047.t1.exon6;Parent=MS.gene068047.t1 |
| chr4.3 | CDS | 20661268 | 20661370 | 20661268 | ID=cds.MS.gene068047.t1;Parent=MS.gene068047.t1 |
| chr4.3 | exon | 20661445 | 20661483 | 20661445 | ID=MS.gene068047.t1.exon7;Parent=MS.gene068047.t1 |
| chr4.3 | CDS | 20661445 | 20661483 | 20661445 | ID=cds.MS.gene068047.t1;Parent=MS.gene068047.t1 |
| chr4.3 | exon | 20661576 | 20661686 | 20661576 | ID=MS.gene068047.t1.exon8;Parent=MS.gene068047.t1 |
| chr4.3 | CDS | 20661576 | 20661686 | 20661576 | ID=cds.MS.gene068047.t1;Parent=MS.gene068047.t1 |
| chr4.3 | exon | 20661800 | 20661865 | 20661800 | ID=MS.gene068047.t1.exon9;Parent=MS.gene068047.t1 |
| chr4.3 | CDS | 20661800 | 20661865 | 20661800 | ID=cds.MS.gene068047.t1;Parent=MS.gene068047.t1 |
| chr4.3 | exon | 20661954 | 20662076 | 20661954 | ID=MS.gene068047.t1.exon10;Parent=MS.gene068047.t1 |
| chr4.3 | CDS | 20661954 | 20662076 | 20661954 | ID=cds.MS.gene068047.t1;Parent=MS.gene068047.t1 |
| Gene Sequence |
| Protein sequence |
