AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068460

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068460.t1 MTR_6g065120 95.172 290 13 1 1 289 1 290 0.0 575
MS.gene068460.t1 MTR_6g065400 76.307 287 68 0 3 289 2 288 2.21e-167 468
MS.gene068460.t1 MTR_6g065370 75.958 287 69 0 3 289 2 288 5.25e-167 466
MS.gene068460.t1 MTR_6g065270 76.140 285 64 1 9 289 6 290 2.48e-166 465
MS.gene068460.t1 MTR_6g065110 71.626 289 82 0 1 289 1 289 2.18e-161 452
MS.gene068460.t1 MTR_6g065340 73.264 288 61 1 2 289 12 283 2.13e-153 432
MS.gene068460.t1 MTR_6g065430 59.859 284 105 2 8 289 6 282 9.31e-123 354
MS.gene068460.t1 MTR_1g082210 41.379 290 163 2 3 288 8 294 3.45e-76 236
MS.gene068460.t1 MTR_1g089310 42.759 290 155 5 5 288 10 294 1.45e-74 232
MS.gene068460.t1 MTR_1g089310 42.759 290 155 5 5 288 26 310 2.17e-74 232
MS.gene068460.t1 MTR_7g093950 40.753 292 164 4 5 288 10 300 3.61e-74 231
MS.gene068460.t1 MTR_6g464280 37.879 264 150 6 33 289 24 280 2.75e-51 171
MS.gene068460.t1 MTR_6g464510 35.556 270 152 7 30 289 25 282 8.63e-47 160
MS.gene068460.t1 MTR_8g035540 35.556 270 152 7 32 289 13 272 6.54e-46 157
MS.gene068460.t1 MTR_6g464320 36.864 236 139 5 25 257 17 245 1.95e-45 156
MS.gene068460.t1 MTR_1g102160 35.333 300 157 12 3 288 4 280 9.93e-45 154
MS.gene068460.t1 MTR_8g035520 36.255 251 139 6 50 289 40 280 1.37e-44 154
MS.gene068460.t1 MTR_0007s0520 37.668 223 121 5 49 265 39 249 9.43e-43 149
MS.gene068460.t1 MTR_7g406880 34.538 249 140 7 56 286 54 297 2.17e-40 144
MS.gene068460.t1 MTR_8g035500 33.582 268 156 7 33 289 17 273 4.65e-40 142
MS.gene068460.t1 MTR_1g102170 34.764 233 128 7 33 257 43 259 1.50e-39 141
MS.gene068460.t1 MTR_6g464120 34.034 238 137 6 33 265 29 251 6.34e-39 143
MS.gene068460.t1 MTR_1g012430 32.171 258 157 5 32 286 15 257 4.01e-38 137
MS.gene068460.t1 MTR_1g111280 35.294 255 132 9 49 286 52 290 1.39e-37 136
MS.gene068460.t1 MTR_4g050140 32.051 234 142 3 61 286 42 266 1.59e-33 125
MS.gene068460.t1 MTR_4g086510 35.407 209 120 4 50 252 35 234 1.79e-32 122
MS.gene068460.t1 MTR_3g012440 31.022 274 162 5 32 286 19 284 2.72e-32 122
MS.gene068460.t1 MTR_7g107040 30.556 288 164 7 11 286 4 267 7.76e-32 120
MS.gene068460.t1 MTR_7g056207 32.444 225 132 4 44 257 56 271 1.67e-31 120
MS.gene068460.t1 MTR_4g086480 31.687 243 146 4 50 286 39 267 2.65e-31 119
MS.gene068460.t1 MTR_4g086540 33.514 185 112 3 39 221 33 208 1.15e-28 112
MS.gene068460.t1 MTR_4g086470 31.276 243 147 4 50 286 38 266 2.76e-28 110
MS.gene068460.t1 MTR_6g022710 31.064 235 122 5 90 286 154 386 6.59e-26 106
MS.gene068460.t1 MTR_6g065470 36.842 171 76 3 8 160 6 162 3.89e-25 98.6
MS.gene068460.t1 MTR_3g101420 27.755 245 150 4 50 284 34 261 9.32e-25 101
MS.gene068460.t1 MTR_1g105020 28.625 269 159 9 33 286 21 271 1.01e-22 95.9
MS.gene068460.t1 MTR_5g005900 28.309 272 161 11 32 286 21 275 2.02e-22 95.1
MS.gene068460.t1 MTR_3g450680 28.049 246 151 7 54 286 48 280 7.80e-22 93.6
MS.gene068460.t1 MTR_8g040860 26.838 272 160 8 32 286 28 277 2.40e-21 92.4
MS.gene068460.t1 MTR_5g005920 26.829 246 150 7 54 284 45 275 4.05e-21 91.7
MS.gene068460.t1 MTR_5g005850 27.126 247 152 7 54 286 45 277 6.43e-21 91.3
MS.gene068460.t1 MTR_0007s0480 40.404 99 50 3 172 265 1 95 3.68e-16 75.1
MS.gene068460.t1 MTR_1g104930 29.661 236 137 7 60 282 48 267 8.97e-16 76.6
MS.gene068460.t1 MTR_7g051020 29.259 270 157 9 32 286 24 274 1.11e-15 76.3
MS.gene068460.t1 MTR_1g104933 28.692 237 142 6 60 286 46 265 1.78e-14 72.8
MS.gene068460.t1 MTR_6g065480 60.784 51 19 1 234 284 1 50 2.27e-14 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068460.t1 AT5G23530 56.164 292 109 6 2 289 5 281 1.06e-117 341
MS.gene068460.t1 AT5G27320 42.361 288 156 3 6 288 11 293 1.79e-76 237
MS.gene068460.t1 AT3G63010 40.206 291 162 6 5 288 10 295 9.55e-70 220
MS.gene068460.t1 AT3G05120 38.889 288 168 2 6 288 11 295 8.32e-68 214
MS.gene068460.t1 AT5G62180 37.262 263 155 6 33 289 21 279 6.15e-51 171
MS.gene068460.t1 AT1G68620 35.470 234 137 4 57 286 57 280 1.88e-43 151
MS.gene068460.t1 AT2G45610 35.366 246 144 4 33 269 22 261 9.92e-43 149
MS.gene068460.t1 AT2G45600 34.016 244 138 6 59 289 38 271 9.92e-43 149
MS.gene068460.t1 AT5G16080 34.137 249 140 6 49 286 54 289 5.81e-39 140
MS.gene068460.t1 AT5G06570 36.765 272 143 9 32 289 22 278 9.82e-34 125
MS.gene068460.t1 AT5G06570 36.765 272 143 9 32 289 22 278 9.82e-34 125
MS.gene068460.t1 AT5G06570 36.765 272 143 9 32 289 37 293 1.28e-33 125
MS.gene068460.t1 AT5G06570 36.765 272 143 9 32 289 37 293 1.28e-33 125
MS.gene068460.t1 AT1G19190 32.787 244 140 7 50 284 32 260 1.15e-32 122
MS.gene068460.t1 AT3G48690 33.333 246 143 7 50 284 32 267 1.53e-31 119
MS.gene068460.t1 AT3G48700 30.830 253 144 6 50 284 32 271 3.62e-31 119
MS.gene068460.t1 AT1G47480 28.832 274 174 7 14 286 5 258 6.96e-30 115
MS.gene068460.t1 AT5G14310 32.759 232 115 3 96 286 151 382 5.93e-28 112
MS.gene068460.t1 AT1G49640 34.940 166 101 3 54 218 37 196 2.04e-27 108
MS.gene068460.t1 AT3G27320 28.302 318 148 7 48 286 48 364 7.81e-27 108
MS.gene068460.t1 AT2G03550 31.120 241 141 6 50 282 32 255 2.37e-26 105
MS.gene068460.t1 AT3G27320 32.157 255 123 7 73 286 151 396 9.28e-26 106
MS.gene068460.t1 AT1G49660 28.936 235 153 4 54 282 36 262 1.38e-23 98.2
MS.gene068460.t1 AT1G49650 33.918 171 100 3 54 218 92 255 3.09e-23 98.2

Find 99 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCGGAAGGGTGGCGGTTT+TGG 0.181057 6.3:-64880254 None:intergenic
AGACAGTGCCGGTGCAAATT+TGG 0.247856 6.3:+64880519 MS.gene068460:CDS
TGCCGAGGATTTGTCGGGTT+TGG 0.292392 6.3:+64880768 MS.gene068460:CDS
TTGGTGGAAACGCCGTTAAC+AGG 0.301029 6.3:-64880142 None:intergenic
GCATCGTAAGCAAAGGAATC+AGG 0.317659 6.3:-64880316 None:intergenic
TTTCCAAGGGAGTACGGGTT+TGG 0.340916 6.3:-64880002 None:intergenic
GGCGTTAACGATAACGTCTT+TGG 0.348769 6.3:-64880161 None:intergenic
GGCACATCATGTTGCGGTTA+GGG 0.354169 6.3:+64880540 MS.gene068460:CDS
CACCAAAACCGCCACCCTTC+CGG 0.359575 6.3:+64880252 MS.gene068460:CDS
GCGGTTAGGGTTTGCAAAGC+GGG 0.360115 6.3:+64880553 MS.gene068460:CDS
AGTACGGGTTTGGGTTTGTT+TGG 0.366771 6.3:-64879992 None:intergenic
TTGCTTACGATGCTGTTTGC+CGG 0.371816 6.3:+64880326 MS.gene068460:CDS
TGGCACATCATGTTGCGGTT+AGG 0.373873 6.3:+64880539 MS.gene068460:CDS
TTCCAAGGGAGTACGGGTTT+GGG 0.379702 6.3:-64880001 None:intergenic
CCGTTAACAGGGATGGCGTT+AGG 0.383299 6.3:-64880130 None:intergenic
CTCCGAGAAATCCGGGTTAT+CGG 0.383375 6.3:+64880577 MS.gene068460:CDS
GATTTGATCCTTTAAATGAT+TGG 0.392667 6.3:+64880821 MS.gene068460:CDS
AAGCGGGGCTCCGAGAAATC+CGG 0.396785 6.3:+64880569 MS.gene068460:CDS
GCCGAATGCCGAGGATTTGT+CGG 0.412896 6.3:+64880762 MS.gene068460:CDS
CGTTAACAGGGATGGCGTTA+GGG 0.417430 6.3:-64880129 None:intergenic
GGCGGAATTGACGGTGGTAG+TGG 0.419693 6.3:-64880215 None:intergenic
ATTAAGAAAACGGCGGTTAA+CGG 0.419946 6.3:-64880086 None:intergenic
CCTAACGCCATCCCTGTTAA+CGG 0.424067 6.3:+64880130 MS.gene068460:CDS
TTTACCGGAGGGATCGGATC+GGG 0.429984 6.3:+64880714 MS.gene068460:CDS
CCGAATGCCGAGGATTTGTC+GGG 0.432463 6.3:+64880763 MS.gene068460:CDS
ATTTGCACCGGCACTGTCTC+CGG 0.436925 6.3:-64880515 None:intergenic
ACCCGATAACCCGGATTTCT+CGG 0.437356 6.3:-64880579 None:intergenic
AGAGGACGGAGGCGGAGATT+AGG 0.439237 6.3:+64880635 MS.gene068460:CDS
CCCGACAAATCCTCGGCATT+CGG 0.443906 6.3:-64880763 None:intergenic
GTTATCTCCGGCGGAATTGA+CGG 0.446779 6.3:-64880224 None:intergenic
AAAGGAATCAGGGGTGAGAT+AGG 0.446803 6.3:-64880305 None:intergenic
TCCGAGAAATCCGGGTTATC+GGG 0.451778 6.3:+64880578 MS.gene068460:CDS
TGGGGAGGAGAGGACGGAGG+CGG 0.459130 6.3:+64880627 MS.gene068460:CDS
CTTTAAATGATTGGCAAAAG+AGG 0.459493 6.3:+64880830 MS.gene068460:CDS
AACCCAAACCCGTACTCCCT+TGG 0.463231 6.3:+64879999 MS.gene068460:CDS
GCGAGATTTCCAAGGGAGTA+CGG 0.466645 6.3:-64880008 None:intergenic
GAGGGATCGGATCGGGATCA+TGG 0.471437 6.3:+64880721 MS.gene068460:CDS
CATGGCGCGGTTAATGTATG+TGG 0.473762 6.3:+64880739 MS.gene068460:CDS
CGAGATTTCCAAGGGAGTAC+GGG 0.479233 6.3:-64880007 None:intergenic
TGGTGGGGAGGAGAGGACGG+AGG 0.481621 6.3:+64880624 MS.gene068460:CDS
TTAACGCCGAAAATAACGTT+TGG 0.482150 6.3:+64880176 MS.gene068460:CDS
AGCGGGGCTCCGAGAAATCC+GGG 0.496119 6.3:+64880570 MS.gene068460:CDS
CATCGTAAGCAAAGGAATCA+GGG 0.510628 6.3:-64880315 None:intergenic
CTGTTTGCCGGAGATTCTGC+CGG 0.510639 6.3:+64880338 MS.gene068460:CDS
GGGATCTCCGTTGGTGTCGA+TGG 0.513090 6.3:+64880663 MS.gene068460:CDS
TGTCGATGGCGAGGACTGAT+TGG 0.513850 6.3:+64880677 MS.gene068460:CDS
TCGATACCAACCCGATAACC+CGG 0.516742 6.3:-64880588 None:intergenic
TGCGATGGATACCGATGCTC+CGG 0.517437 6.3:-64880403 None:intergenic
ATATTTGGACAAGAATAAAA+CGG 0.520124 6.3:+64880453 MS.gene068460:CDS
TTTGGTGTCGATGTTATCTC+CGG 0.526225 6.3:-64880236 None:intergenic
GATCTAAGAAATTAAGAAAA+CGG 0.534119 6.3:-64880096 None:intergenic
ATCCAAACCCGACAAATCCT+CGG 0.546809 6.3:-64880770 None:intergenic
GCGGAATTGACGGTGGTAGT+GGG 0.549165 6.3:-64880214 None:intergenic
CGGTTAGGGTTTGCAAAGCG+GGG 0.549323 6.3:+64880554 MS.gene068460:CDS
ACCGTCACACGCCGGAGCAT+CGG 0.554699 6.3:+64880392 MS.gene068460:CDS
AATGATCACCGGAAGGGTGG+CGG 0.554851 6.3:-64880260 None:intergenic
CGGCGTGTGACGGTAATTGA+CGG 0.569268 6.3:-64880383 None:intergenic
ACCGATGCTCCGGCGTGTGA+CGG 0.569889 6.3:-64880393 None:intergenic
TGGCGAGGACTGATTGGATG+TGG 0.571085 6.3:+64880683 MS.gene068460:CDS
ACGTGAAGCGTCTGTTAAAG+CGG 0.572626 6.3:-64880050 None:intergenic
CTCCGTTGGTGTCGATGGCG+AGG 0.572685 6.3:+64880668 MS.gene068460:CDS
TGCGGTTAGGGTTTGCAAAG+CGG 0.575777 6.3:+64880552 MS.gene068460:CDS
TGGTGGAAACGCCGTTAACA+GGG 0.577904 6.3:-64880141 None:intergenic
ATTGAAATGCGAGATTTCCA+AGG 0.579236 6.3:-64880016 None:intergenic
TGATCCCGATCCGATCCCTC+CGG 0.587634 6.3:-64880718 None:intergenic
TTTGTCGGGTTTGGATTACC+CGG 0.592514 6.3:+64880777 MS.gene068460:CDS
TTCCTCGCCGGAGACAGTGC+CGG 0.593734 6.3:+64880508 MS.gene068460:CDS
TGGTAGTGGGTGTGAAGAGA+CGG 0.595217 6.3:-64880201 None:intergenic
AGAAATCCGGGTTATCGGGT+TGG 0.598480 6.3:+64880582 MS.gene068460:CDS
GACGCTTCACGTCGCTCTAA+CGG 0.599989 6.3:+64880061 MS.gene068460:CDS
AAATTTGGCACATCATGTTG+CGG 0.600308 6.3:+64880534 MS.gene068460:CDS
GATAGGTGAATCCACCTCCA+TGG 0.601866 6.3:-64880288 None:intergenic
ATGATGTGCCAAATTTGCAC+CGG 0.607886 6.3:-64880527 None:intergenic
GGAAACGCCGTTAACAGGGA+TGG 0.608074 6.3:-64880137 None:intergenic
GTGTCAAGATGTTTCCTCGC+CGG 0.608393 6.3:+64880496 MS.gene068460:CDS
GTTAACGATAACGTCTTTGG+TGG 0.608902 6.3:-64880158 None:intergenic
TAGGCTCGAGGGATCTCCGT+TGG 0.609000 6.3:+64880654 MS.gene068460:CDS
CCATGGAAGAAAATGATCAC+CGG 0.609666 6.3:-64880271 None:intergenic
TCTCCATCGTCGTATTGCGA+TGG 0.613465 6.3:-64880418 None:intergenic
ATGGCGCGGTTAATGTATGT+GGG 0.615269 6.3:+64880740 MS.gene068460:CDS
ACTACCACCGTCAATTCCGC+CGG 0.615288 6.3:+64880217 MS.gene068460:CDS
GTTAACAGGGATGGCGTTAG+GGG 0.618052 6.3:-64880128 None:intergenic
TTGAAATGCGAGATTTCCAA+GGG 0.618740 6.3:-64880015 None:intergenic
GCAAACAGCATCGTAAGCAA+AGG 0.620676 6.3:-64880323 None:intergenic
GGAAGAAAATGATCACCGGA+AGG 0.622089 6.3:-64880267 None:intergenic
GAAAATGATCACCGGAAGGG+TGG 0.622802 6.3:-64880263 None:intergenic
TATCCATCGCAATACGACGA+TGG 0.630849 6.3:+64880415 MS.gene068460:CDS
GGTGTCGATGTTATCTCCGG+CGG 0.631109 6.3:-64880233 None:intergenic
GGAGGCGGAGATTAGGCTCG+AGG 0.635168 6.3:+64880642 MS.gene068460:CDS
CACCGGCACTGTCTCCGGCG+AGG 0.645978 6.3:-64880510 None:intergenic
ATCGGATCGGGATCATGGCG+CGG 0.650554 6.3:+64880726 MS.gene068460:CDS
GTCCTCGCCATCGACACCAA+CGG 0.652569 6.3:-64880670 None:intergenic
ATCGTAAGCAAAGGAATCAG+GGG 0.663525 6.3:-64880314 None:intergenic
GAAGAAAATGATCACCGGAA+GGG 0.667962 6.3:-64880266 None:intergenic
ATCTCCGGCGGAATTGACGG+TGG 0.683201 6.3:-64880221 None:intergenic
GAGGCGGAGATTAGGCTCGA+GGG 0.689293 6.3:+64880643 MS.gene068460:CDS
CGTCAATTACCGTCACACGC+CGG 0.702798 6.3:+64880384 MS.gene068460:CDS
TGTATGTGGGCCGAATGCCG+AGG 0.703597 6.3:+64880753 MS.gene068460:CDS
CTAAGAAATTAAGAAAACGG+CGG 0.730991 6.3:-64880093 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTTGGACAAGAATAAAA+CGG + chr6.3:64880453-64880472 MS.gene068460:CDS 20.0%
!! GATCTAAGAAATTAAGAAAA+CGG - chr6.3:64880099-64880118 None:intergenic 20.0%
! GATTTGATCCTTTAAATGAT+TGG + chr6.3:64880821-64880840 MS.gene068460:CDS 25.0%
!!! AGAAGCTGTTTTGAAATATT+TGG + chr6.3:64880438-64880457 MS.gene068460:CDS 25.0%
CTAAGAAATTAAGAAAACGG+CGG - chr6.3:64880096-64880115 None:intergenic 30.0%
! CTCTTTTGCCAATCATTTAA+AGG - chr6.3:64880832-64880851 None:intergenic 30.0%
AAATTTGGCACATCATGTTG+CGG + chr6.3:64880534-64880553 MS.gene068460:CDS 35.0%
ATTAAGAAAACGGCGGTTAA+CGG - chr6.3:64880089-64880108 None:intergenic 35.0%
ATTGAAATGCGAGATTTCCA+AGG - chr6.3:64880019-64880038 None:intergenic 35.0%
CAATAAAAACAAGCGTATCC+GGG - chr6.3:64880798-64880817 None:intergenic 35.0%
CCAATAAAAACAAGCGTATC+CGG - chr6.3:64880799-64880818 None:intergenic 35.0%
TTAACGCCGAAAATAACGTT+TGG + chr6.3:64880176-64880195 MS.gene068460:CDS 35.0%
TTGAAATGCGAGATTTCCAA+GGG - chr6.3:64880018-64880037 None:intergenic 35.0%
!! ACGGAACCAAACGTTATTTT+CGG - chr6.3:64880185-64880204 None:intergenic 35.0%
!!! GATACGCTTGTTTTTATTGG+TGG + chr6.3:64880799-64880818 MS.gene068460:CDS 35.0%
ATCGTAAGCAAAGGAATCAG+GGG - chr6.3:64880317-64880336 None:intergenic 40.0%
ATGATGTGCCAAATTTGCAC+CGG - chr6.3:64880530-64880549 None:intergenic 40.0%
CATCGTAAGCAAAGGAATCA+GGG - chr6.3:64880318-64880337 None:intergenic 40.0%
CCATGGAAGAAAATGATCAC+CGG - chr6.3:64880274-64880293 None:intergenic 40.0%
GAAGAAAATGATCACCGGAA+GGG - chr6.3:64880269-64880288 None:intergenic 40.0%
GTTAACGATAACGTCTTTGG+TGG - chr6.3:64880161-64880180 None:intergenic 40.0%
! ATCATTTTCTTCCATGGAGG+TGG + chr6.3:64880277-64880296 MS.gene068460:CDS 40.0%
! GTGATCATTTTCTTCCATGG+AGG + chr6.3:64880274-64880293 MS.gene068460:CDS 40.0%
! TCTTGACACGTCAGCATTTT+CGG - chr6.3:64880485-64880504 None:intergenic 40.0%
!! TTTGGTGTCGATGTTATCTC+CGG - chr6.3:64880239-64880258 None:intergenic 40.0%
!!! CCGGATACGCTTGTTTTTAT+TGG + chr6.3:64880796-64880815 MS.gene068460:CDS 40.0%
!!! CGACAATAGCGTTGATTTTC+CGG - chr6.3:64880360-64880379 None:intergenic 40.0%
!!! GATGTGGAAAGCGTTTTTAC+CGG + chr6.3:64880699-64880718 MS.gene068460:CDS 40.0%
AAAGGAATCAGGGGTGAGAT+AGG - chr6.3:64880308-64880327 None:intergenic 45.0%
ATCCAAACCCGACAAATCCT+CGG - chr6.3:64880773-64880792 None:intergenic 45.0%
ATGGCGCGGTTAATGTATGT+GGG + chr6.3:64880740-64880759 MS.gene068460:CDS 45.0%
GCAAACAGCATCGTAAGCAA+AGG - chr6.3:64880326-64880345 None:intergenic 45.0%
GCATCGTAAGCAAAGGAATC+AGG - chr6.3:64880319-64880338 None:intergenic 45.0%
GGAAGAAAATGATCACCGGA+AGG - chr6.3:64880270-64880289 None:intergenic 45.0%
GGCGTTAACGATAACGTCTT+TGG - chr6.3:64880164-64880183 None:intergenic 45.0%
TATCCATCGCAATACGACGA+TGG + chr6.3:64880415-64880434 MS.gene068460:CDS 45.0%
TTTGTCGGGTTTGGATTACC+CGG + chr6.3:64880777-64880796 MS.gene068460:CDS 45.0%
! ACGTGAAGCGTCTGTTAAAG+CGG - chr6.3:64880053-64880072 None:intergenic 45.0%
! AGTACGGGTTTGGGTTTGTT+TGG - chr6.3:64879995-64880014 None:intergenic 45.0%
! CCGGTGATCATTTTCTTCCA+TGG + chr6.3:64880271-64880290 MS.gene068460:CDS 45.0%
! CTTGACACGTCAGCATTTTC+GGG - chr6.3:64880484-64880503 None:intergenic 45.0%
! TGATTTTCCGGCAGAATCTC+CGG - chr6.3:64880348-64880367 None:intergenic 45.0%
! TTGCTTACGATGCTGTTTGC+CGG + chr6.3:64880326-64880345 MS.gene068460:CDS 45.0%
!!! GTATCGATCCAGCCGTTTTT+TGG + chr6.3:64880604-64880623 MS.gene068460:CDS 45.0%
!!! TGGAAAGCGTTTTTACCGGA+GGG + chr6.3:64880703-64880722 MS.gene068460:CDS 45.0%
ACCCGATAACCCGGATTTCT+CGG - chr6.3:64880582-64880601 None:intergenic 50.0%
AGAAATCCGGGTTATCGGGT+TGG + chr6.3:64880582-64880601 MS.gene068460:CDS 50.0%
CATGGCGCGGTTAATGTATG+TGG + chr6.3:64880739-64880758 MS.gene068460:CDS 50.0%
CCTAACGCCATCCCTGTTAA+CGG + chr6.3:64880130-64880149 MS.gene068460:CDS 50.0%
CGTTAACAGGGATGGCGTTA+GGG - chr6.3:64880132-64880151 None:intergenic 50.0%
CTCCGAGAAATCCGGGTTAT+CGG + chr6.3:64880577-64880596 MS.gene068460:CDS 50.0%
CTCTCCTCCCCACCAAAAAA+CGG - chr6.3:64880619-64880638 None:intergenic 50.0%
GAAAATGATCACCGGAAGGG+TGG - chr6.3:64880266-64880285 None:intergenic 50.0%
GATAGGTGAATCCACCTCCA+TGG - chr6.3:64880291-64880310 None:intergenic 50.0%
GCGAGATTTCCAAGGGAGTA+CGG - chr6.3:64880011-64880030 None:intergenic 50.0%
GGCACATCATGTTGCGGTTA+GGG + chr6.3:64880540-64880559 MS.gene068460:CDS 50.0%
GTGTCAAGATGTTTCCTCGC+CGG + chr6.3:64880496-64880515 MS.gene068460:CDS 50.0%
GTTAACAGGGATGGCGTTAG+GGG - chr6.3:64880131-64880150 None:intergenic 50.0%
GTTATCTCCGGCGGAATTGA+CGG - chr6.3:64880227-64880246 None:intergenic 50.0%
TCCGAGAAATCCGGGTTATC+GGG + chr6.3:64880578-64880597 MS.gene068460:CDS 50.0%
TCGATACCAACCCGATAACC+CGG - chr6.3:64880591-64880610 None:intergenic 50.0%
TCTCCATCGTCGTATTGCGA+TGG - chr6.3:64880421-64880440 None:intergenic 50.0%
TGCGGTTAGGGTTTGCAAAG+CGG + chr6.3:64880552-64880571 MS.gene068460:CDS 50.0%
TGGCACATCATGTTGCGGTT+AGG + chr6.3:64880539-64880558 MS.gene068460:CDS 50.0%
TGGTGGAAACGCCGTTAACA+GGG - chr6.3:64880144-64880163 None:intergenic 50.0%
TTGGTGGAAACGCCGTTAAC+AGG - chr6.3:64880145-64880164 None:intergenic 50.0%
! AGCGTTTTTACCGGAGGGAT+CGG + chr6.3:64880708-64880727 MS.gene068460:CDS 50.0%
! CGAGATTTCCAAGGGAGTAC+GGG - chr6.3:64880010-64880029 None:intergenic 50.0%
! TTCCAAGGGAGTACGGGTTT+GGG - chr6.3:64880004-64880023 None:intergenic 50.0%
! TTTCCAAGGGAGTACGGGTT+TGG - chr6.3:64880005-64880024 None:intergenic 50.0%
! TTTTACCGGAGGGATCGGAT+CGG + chr6.3:64880713-64880732 MS.gene068460:CDS 50.0%
!! AGACAGTGCCGGTGCAAATT+TGG + chr6.3:64880519-64880538 MS.gene068460:CDS 50.0%
!! TGGTAGTGGGTGTGAAGAGA+CGG - chr6.3:64880204-64880223 None:intergenic 50.0%
!!! CGATCCAGCCGTTTTTTGGT+GGG + chr6.3:64880608-64880627 MS.gene068460:CDS 50.0%
!!! GATCCAGCCGTTTTTTGGTG+GGG + chr6.3:64880609-64880628 MS.gene068460:CDS 50.0%
!!! GTGGAAAGCGTTTTTACCGG+AGG + chr6.3:64880702-64880721 MS.gene068460:CDS 50.0%
!!! TCGATCCAGCCGTTTTTTGG+TGG + chr6.3:64880607-64880626 MS.gene068460:CDS 50.0%
AACCCAAACCCGTACTCCCT+TGG + chr6.3:64879999-64880018 MS.gene068460:CDS 55.0%
AATGATCACCGGAAGGGTGG+CGG - chr6.3:64880263-64880282 None:intergenic 55.0%
ACTACCACCGTCAATTCCGC+CGG + chr6.3:64880217-64880236 MS.gene068460:CDS 55.0%
CCCGACAAATCCTCGGCATT+CGG - chr6.3:64880766-64880785 None:intergenic 55.0%
CCGAATGCCGAGGATTTGTC+GGG + chr6.3:64880763-64880782 MS.gene068460:CDS 55.0%
CCGTTAACAGGGATGGCGTT+AGG - chr6.3:64880133-64880152 None:intergenic 55.0%
CGGCGTGTGACGGTAATTGA+CGG - chr6.3:64880386-64880405 None:intergenic 55.0%
CGGTTAGGGTTTGCAAAGCG+GGG + chr6.3:64880554-64880573 MS.gene068460:CDS 55.0%
CGTCAATTACCGTCACACGC+CGG + chr6.3:64880384-64880403 MS.gene068460:CDS 55.0%
CTGTTTGCCGGAGATTCTGC+CGG + chr6.3:64880338-64880357 MS.gene068460:CDS 55.0%
GACGCTTCACGTCGCTCTAA+CGG + chr6.3:64880061-64880080 MS.gene068460:CDS 55.0%
GCCGAATGCCGAGGATTTGT+CGG + chr6.3:64880762-64880781 MS.gene068460:CDS 55.0%
GCGGAATTGACGGTGGTAGT+GGG - chr6.3:64880217-64880236 None:intergenic 55.0%
GCGGTTAGGGTTTGCAAAGC+GGG + chr6.3:64880553-64880572 MS.gene068460:CDS 55.0%
GGAAACGCCGTTAACAGGGA+TGG - chr6.3:64880140-64880159 None:intergenic 55.0%
TGCCGAGGATTTGTCGGGTT+TGG + chr6.3:64880768-64880787 MS.gene068460:CDS 55.0%
TGCGATGGATACCGATGCTC+CGG - chr6.3:64880406-64880425 None:intergenic 55.0%
TGGCGAGGACTGATTGGATG+TGG + chr6.3:64880683-64880702 MS.gene068460:CDS 55.0%
TGTCGATGGCGAGGACTGAT+TGG + chr6.3:64880677-64880696 MS.gene068460:CDS 55.0%
TTTACCGGAGGGATCGGATC+GGG + chr6.3:64880714-64880733 MS.gene068460:CDS 55.0%
! ATTTGCACCGGCACTGTCTC+CGG - chr6.3:64880518-64880537 None:intergenic 55.0%
! TTTTGGTGGGGAGGAGAGGA+CGG + chr6.3:64880621-64880640 MS.gene068460:CDS 55.0%
!! GGTGTCGATGTTATCTCCGG+CGG - chr6.3:64880236-64880255 None:intergenic 55.0%
!!! CGTTTTTTGGTGGGGAGGAG+AGG + chr6.3:64880617-64880636 MS.gene068460:CDS 55.0%
AAGCGGGGCTCCGAGAAATC+CGG + chr6.3:64880569-64880588 MS.gene068460:CDS 60.0%
AGAGGACGGAGGCGGAGATT+AGG + chr6.3:64880635-64880654 MS.gene068460:CDS 60.0%
ATCGGATCGGGATCATGGCG+CGG + chr6.3:64880726-64880745 MS.gene068460:CDS 60.0%
ATCTCCGGCGGAATTGACGG+TGG - chr6.3:64880224-64880243 None:intergenic 60.0%
CACCAAAACCGCCACCCTTC+CGG + chr6.3:64880252-64880271 MS.gene068460:CDS 60.0%
CCTCCCCACCAAAAAACGGC+TGG - chr6.3:64880615-64880634 None:intergenic 60.0%
GAGGCGGAGATTAGGCTCGA+GGG + chr6.3:64880643-64880662 MS.gene068460:CDS 60.0%
GAGGGATCGGATCGGGATCA+TGG + chr6.3:64880721-64880740 MS.gene068460:CDS 60.0%
GGCGGAATTGACGGTGGTAG+TGG - chr6.3:64880218-64880237 None:intergenic 60.0%
GTCCTCGCCATCGACACCAA+CGG - chr6.3:64880673-64880692 None:intergenic 60.0%
TAGGCTCGAGGGATCTCCGT+TGG + chr6.3:64880654-64880673 MS.gene068460:CDS 60.0%
TGATCCCGATCCGATCCCTC+CGG - chr6.3:64880721-64880740 None:intergenic 60.0%
TGTATGTGGGCCGAATGCCG+AGG + chr6.3:64880753-64880772 MS.gene068460:CDS 60.0%
!! GGGATCTCCGTTGGTGTCGA+TGG + chr6.3:64880663-64880682 MS.gene068460:CDS 60.0%
!!! CCAGCCGTTTTTTGGTGGGG+AGG + chr6.3:64880612-64880631 MS.gene068460:CDS 60.0%
ACCGATGCTCCGGCGTGTGA+CGG - chr6.3:64880396-64880415 None:intergenic 65.0%
ACCGTCACACGCCGGAGCAT+CGG + chr6.3:64880392-64880411 MS.gene068460:CDS 65.0%
AGCGGGGCTCCGAGAAATCC+GGG + chr6.3:64880570-64880589 MS.gene068460:CDS 65.0%
GGAGGCGGAGATTAGGCTCG+AGG + chr6.3:64880642-64880661 MS.gene068460:CDS 65.0%
TTCCTCGCCGGAGACAGTGC+CGG + chr6.3:64880508-64880527 MS.gene068460:CDS 65.0%
!! CACCGGAAGGGTGGCGGTTT+TGG - chr6.3:64880257-64880276 None:intergenic 65.0%
!! CTCCGTTGGTGTCGATGGCG+AGG + chr6.3:64880668-64880687 MS.gene068460:CDS 65.0%
TGGGGAGGAGAGGACGGAGG+CGG + chr6.3:64880627-64880646 MS.gene068460:CDS 70.0%
TGGTGGGGAGGAGAGGACGG+AGG + chr6.3:64880624-64880643 MS.gene068460:CDS 70.0%
CACCGGCACTGTCTCCGGCG+AGG - chr6.3:64880513-64880532 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 64879983 64880851 64879983 ID=MS.gene068460
chr6.3 mRNA 64879983 64880851 64879983 ID=MS.gene068460.t1;Parent=MS.gene068460
chr6.3 exon 64879983 64880851 64879983 ID=MS.gene068460.t1.exon1;Parent=MS.gene068460.t1
chr6.3 CDS 64879983 64880851 64879983 ID=cds.MS.gene068460.t1;Parent=MS.gene068460.t1
Gene Sequence

>MS.gene068460

ATGTCATCACCAAACAAACCCAAACCCGTACTCCCTTGGAAATCTCGCATTTCAATTTCATTCATAACCGCTTTAACAGACGCTTCACGTCGCTCTAACGGCACCGTTAACCGCCGTTTTCTTAATTTCTTAGATCGCAAATCTTCCCCTAACGCCATCCCTGTTAACGGCGTTTCCACCAAAGACGTTATCGTTAACGCCGAAAATAACGTTTGGTTCCGTCTCTTCACACCCACTACCACCGTCAATTCCGCCGGAGATAACATCGACACCAAAACCGCCACCCTTCCGGTGATCATTTTCTTCCATGGAGGTGGATTCACCTATCTCACCCCTGATTCCTTTGCTTACGATGCTGTTTGCCGGAGATTCTGCCGGAAAATCAACGCTATTGTCGTCTCCGTCAATTACCGTCACACGCCGGAGCATCGGTATCCATCGCAATACGACGATGGAGAAGCTGTTTTGAAATATTTGGACAAGAATAAAACGGTTTTACCCGAAAATGCTGACGTGTCAAGATGTTTCCTCGCCGGAGACAGTGCCGGTGCAAATTTGGCACATCATGTTGCGGTTAGGGTTTGCAAAGCGGGGCTCCGAGAAATCCGGGTTATCGGGTTGGTATCGATCCAGCCGTTTTTTGGTGGGGAGGAGAGGACGGAGGCGGAGATTAGGCTCGAGGGATCTCCGTTGGTGTCGATGGCGAGGACTGATTGGATGTGGAAAGCGTTTTTACCGGAGGGATCGGATCGGGATCATGGCGCGGTTAATGTATGTGGGCCGAATGCCGAGGATTTGTCGGGTTTGGATTACCCGGATACGCTTGTTTTTATTGGTGGATTTGATCCTTTAAATGATTGGCAAAAGAG
Protein sequence

>MS.gene068460.t1

MSSPNKPKPVLPWKSRISISFITALTDASRRSNGTVNRRFLNFLDRKSSPNAIPVNGVSTKDVIVNAENNVWFRLFTPTTTVNSAGDNIDTKTATLPVIIFFHGGGFTYLTPDSFAYDAVCRRFCRKINAIVVSVNYRHTPEHRYPSQYDDGEAVLKYLDKNKTVLPENADVSRCFLAGDSAGANLAHHVAVRVCKAGLREIRVIGLVSIQPFFGGEERTEAEIRLEGSPLVSMARTDWMWKAFLPEGSDRDHGAVNVCGPNAEDLSGLDYPDTLVFIGGFDPLNDWQK