AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene068472

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068472.t1 MTR_6g065270 92.398 342 22 1 1 338 1 342 0.0 659
MS.gene068472.t1 MTR_6g065370 79.880 333 67 0 6 338 8 340 0.0 570
MS.gene068472.t1 MTR_6g065400 78.378 333 72 0 6 338 8 340 0.0 563
MS.gene068472.t1 MTR_6g065120 78.144 334 72 1 6 338 9 342 0.0 561
MS.gene068472.t1 MTR_6g065340 81.081 333 47 1 6 338 19 335 0.0 539
MS.gene068472.t1 MTR_6g065110 68.308 325 103 0 8 332 11 335 1.79e-176 493
MS.gene068472.t1 MTR_6g065430 57.958 333 131 2 3 333 4 329 1.10e-143 409
MS.gene068472.t1 MTR_1g082210 38.209 335 200 3 2 332 10 341 7.03e-76 237
MS.gene068472.t1 MTR_7g093950 37.059 340 205 4 1 332 9 347 1.03e-74 234
MS.gene068472.t1 MTR_1g089310 37.389 337 202 3 1 332 9 341 1.09e-73 231
MS.gene068472.t1 MTR_1g089310 37.389 337 202 3 1 332 25 357 1.63e-73 231
MS.gene068472.t1 MTR_6g464280 37.226 274 158 5 30 296 24 290 4.77e-51 172
MS.gene068472.t1 MTR_8g035540 33.121 314 189 6 29 331 13 316 4.54e-47 162
MS.gene068472.t1 MTR_4g050140 31.529 314 193 5 29 333 17 317 2.48e-45 157
MS.gene068472.t1 MTR_6g464510 35.507 276 160 8 29 296 27 292 5.66e-45 156
MS.gene068472.t1 MTR_6g464320 35.106 282 169 5 22 296 17 291 1.07e-44 156
MS.gene068472.t1 MTR_8g035500 31.861 317 199 6 23 331 10 317 1.11e-44 155
MS.gene068472.t1 MTR_7g406880 32.268 313 183 9 44 333 45 351 2.32e-44 155
MS.gene068472.t1 MTR_0007s0520 39.171 217 117 4 44 254 37 244 3.52e-44 154
MS.gene068472.t1 MTR_8g035520 33.223 301 179 6 47 336 40 329 4.71e-44 154
MS.gene068472.t1 MTR_1g102160 37.638 271 142 10 29 285 23 280 1.80e-42 150
MS.gene068472.t1 MTR_1g012430 32.903 310 188 8 29 333 15 309 3.23e-42 149
MS.gene068472.t1 MTR_1g111280 33.333 303 171 11 45 331 51 338 1.49e-40 145
MS.gene068472.t1 MTR_3g012440 29.938 324 208 4 29 333 19 342 2.30e-40 145
MS.gene068472.t1 MTR_7g107040 31.633 294 180 5 53 336 39 321 7.81e-40 143
MS.gene068472.t1 MTR_1g102170 32.479 234 132 5 30 254 43 259 5.19e-39 141
MS.gene068472.t1 MTR_3g101420 32.226 301 172 9 47 333 34 316 1.62e-37 137
MS.gene068472.t1 MTR_6g464120 35.345 232 129 6 30 254 29 246 3.96e-37 139
MS.gene068472.t1 MTR_4g086540 30.592 304 177 7 36 334 33 307 3.09e-36 133
MS.gene068472.t1 MTR_4g086510 31.186 295 183 7 47 332 35 318 7.83e-36 132
MS.gene068472.t1 MTR_4g086480 31.525 295 177 9 47 331 39 318 1.80e-34 129
MS.gene068472.t1 MTR_7g056207 31.000 300 185 8 47 336 67 354 9.75e-34 127
MS.gene068472.t1 MTR_4g086470 30.976 297 180 9 47 333 38 319 2.23e-30 117
MS.gene068472.t1 MTR_6g022710 30.182 275 146 5 89 322 156 425 6.47e-30 119
MS.gene068472.t1 MTR_1g105020 28.378 296 184 8 51 331 40 322 3.41e-28 112
MS.gene068472.t1 MTR_3g450680 27.835 291 182 7 51 326 48 325 1.56e-26 107
MS.gene068472.t1 MTR_5g005900 28.354 328 192 10 29 333 21 328 6.11e-26 105
MS.gene068472.t1 MTR_5g005850 28.523 298 182 8 51 331 45 328 9.78e-26 105
MS.gene068472.t1 MTR_5g005920 26.462 325 202 11 29 333 25 332 8.06e-25 103
MS.gene068472.t1 MTR_7g051020 30.312 320 192 9 29 333 24 327 6.72e-24 100
MS.gene068472.t1 MTR_8g040860 26.984 315 193 12 29 326 28 322 7.76e-24 100
MS.gene068472.t1 MTR_6g065470 33.529 170 81 3 6 157 7 162 3.08e-22 92.0
MS.gene068472.t1 MTR_1g104930 28.840 319 195 11 29 333 24 324 1.08e-18 85.9
MS.gene068472.t1 MTR_1g104933 27.931 290 179 8 57 333 46 318 4.91e-17 80.9
MS.gene068472.t1 MTR_6g065480 53.448 58 26 1 231 288 1 57 2.69e-15 69.7
MS.gene068472.t1 MTR_0007s0480 38.462 91 50 2 169 254 1 90 5.43e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene068472.t1 AT5G23530 54.070 344 136 5 2 337 3 332 5.61e-140 400
MS.gene068472.t1 AT5G27320 38.209 335 201 2 1 332 9 340 3.43e-79 246
MS.gene068472.t1 AT3G63010 35.942 345 209 5 1 338 9 348 1.40e-71 226
MS.gene068472.t1 AT3G05120 35.608 337 209 2 1 332 9 342 2.82e-71 225
MS.gene068472.t1 AT5G62180 35.144 313 188 10 30 334 21 326 6.11e-52 175
MS.gene068472.t1 AT5G16080 34.520 281 158 8 46 314 54 320 2.55e-45 158
MS.gene068472.t1 AT2G45600 33.108 296 172 8 56 337 38 321 5.03e-45 157
MS.gene068472.t1 AT5G06570 35.380 342 186 9 9 335 8 329 3.10e-44 155
MS.gene068472.t1 AT5G06570 35.380 342 186 9 9 335 8 329 3.10e-44 155
MS.gene068472.t1 AT5G06570 35.380 342 186 9 9 335 23 344 4.60e-44 154
MS.gene068472.t1 AT5G06570 35.380 342 186 9 9 335 23 344 4.60e-44 154
MS.gene068472.t1 AT2G45610 33.214 280 170 5 30 300 22 293 6.92e-42 148
MS.gene068472.t1 AT1G68620 31.359 287 176 7 54 332 57 330 8.05e-42 149
MS.gene068472.t1 AT1G47480 30.816 331 203 10 11 336 5 314 3.28e-41 146
MS.gene068472.t1 AT1G19190 31.861 317 184 14 30 333 18 315 1.14e-32 124
MS.gene068472.t1 AT3G48700 30.097 309 179 12 47 332 32 326 1.20e-31 121
MS.gene068472.t1 AT3G27320 27.895 380 181 9 23 322 37 403 8.76e-31 121
MS.gene068472.t1 AT5G14310 31.752 274 140 6 93 322 151 421 1.42e-30 120
MS.gene068472.t1 AT2G03550 32.890 301 168 12 47 333 32 312 7.01e-30 116
MS.gene068472.t1 AT3G27320 30.225 311 165 8 54 322 135 435 8.85e-30 119
MS.gene068472.t1 AT3G48690 29.703 303 183 10 47 332 32 321 1.47e-29 115
MS.gene068472.t1 AT1G49640 31.330 233 147 8 50 279 36 258 2.81e-26 106
MS.gene068472.t1 AT1G49660 28.664 307 195 10 35 331 22 314 1.46e-25 104
MS.gene068472.t1 AT1G49650 30.502 259 157 9 51 299 92 337 1.72e-21 94.4

Find 100 sgRNAs with CRISPR-Local

Find 120 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGACAGTTCCGGTGCAAATT+TGG 0.242565 6.3:+65043619 MS.gene068472:CDS
GGCGTTAACGGCAATGTCTT+TGG 0.260995 6.3:-65043261 None:intergenic
GACAGGAAGGGAGGCTGTTT+TGG 0.273074 6.3:-65043354 None:intergenic
TGCGGAGGATTTGTCGGGTT+TGG 0.280062 6.3:+65043868 MS.gene068472:CDS
GGCACATCATCTTGCAGTTC+GGG 0.281818 6.3:+65043640 MS.gene068472:CDS
CTCTTTACTCCCACTGTTGC+CGG 0.296074 6.3:+65043305 MS.gene068472:CDS
GCAGTTCGGGTTTGTAAAGC+TGG 0.329901 6.3:+65043653 MS.gene068472:CDS
GGCAAAAGAGGTATTATGAT+TGG 0.376841 6.3:+65043942 MS.gene068472:CDS
GTGGTGGAAGGTGTTCTTAC+CGG 0.381206 6.3:+65043799 MS.gene068472:CDS
CTCCGGGAAATCCGGATTAT+CGG 0.399962 6.3:+65043677 MS.gene068472:CDS
GGGTTTGTAAAGCTGGGCTC+CGG 0.403578 6.3:+65043660 MS.gene068472:CDS
TTCCTTGCCGGAGACAGTTC+CGG 0.404209 6.3:+65043608 MS.gene068472:CDS
ATCATTTACTTCCACGGCGG+CGG 0.407976 6.3:+65043377 MS.gene068472:CDS
CCTAATGCTACTCCCGTTAA+CGG 0.408492 6.3:+65043230 MS.gene068472:CDS
GATTTGATCCTTTGAATGAT+TGG 0.409071 6.3:+65043921 MS.gene068472:CDS
GCCGAATGCGGAGGATTTGT+CGG 0.409294 6.3:+65043862 MS.gene068472:CDS
ACTCAACACCTCTTCTTCCT+TGG 0.411552 6.3:+65043099 MS.gene068472:CDS
TGGCACATCATCTTGCAGTT+CGG 0.418774 6.3:+65043639 MS.gene068472:CDS
ACCCGATAATCCGGATTTCC+CGG 0.425872 6.3:-65043679 None:intergenic
TTTGGTGGAAACGCCGTTAA+CGG 0.430126 6.3:-65043243 None:intergenic
TCCGGGAAATCCGGATTATC+GGG 0.432121 6.3:+65043678 MS.gene068472:CDS
TGAGTAGATTCAGGCAGATC+AGG 0.435184 6.3:-65044034 None:intergenic
AAGCTGGGCTCCGGGAAATC+CGG 0.437572 6.3:+65043669 MS.gene068472:CDS
CCGAATGCGGAGGATTTGTC+GGG 0.438724 6.3:+65043863 MS.gene068472:CDS
TAAAAGTGAAAGAAGTGAAA+TGG 0.440270 6.3:-65043135 None:intergenic
CCGTTAACGGGAGTAGCATT+AGG 0.443886 6.3:-65043230 None:intergenic
CCCGACAAATCCTCCGCATT+CGG 0.445071 6.3:-65043863 None:intergenic
TGGATACCAACCCGATAATC+CGG 0.449037 6.3:-65043688 None:intergenic
GTGTCAAAATGTTTCCTTGC+CGG 0.452264 6.3:+65043596 MS.gene068472:CDS
TTGGTGGAAACGCCGTTAAC+GGG 0.454826 6.3:-65043242 None:intergenic
CGCCGTTGGTGTCGATGGTA+AGG 0.455201 6.3:+65043768 MS.gene068472:CDS
GATATCGATGCTCCGGTGTA+AGG 0.456817 6.3:-65043496 None:intergenic
TATGATTGGTTAAAGAAATG+TGG 0.458980 6.3:+65043956 MS.gene068472:CDS
CTTTATGTCGTAGACTCTGC+AGG 0.465457 6.3:+65043438 MS.gene068472:CDS
CATTCACCGCGTCATGATCT+CGG 0.469524 6.3:-65043832 None:intergenic
TTAACGCCGAAAATAACGTT+TGG 0.482150 6.3:+65043276 MS.gene068472:CDS
GAGGCGGAGATTAAACTTGA+TGG 0.482240 6.3:+65043743 MS.gene068472:CDS
CTTTGAATGATTGGCAAAAG+AGG 0.487397 6.3:+65043930 MS.gene068472:CDS
CCTGTCATCATTTACTTCCA+CGG 0.488327 6.3:+65043371 MS.gene068472:CDS
ATGATTGGTTAAAGAAATGT+GGG 0.488530 6.3:+65043957 MS.gene068472:CDS
TCATTTACTTCCACGGCGGC+GGG 0.488815 6.3:+65043378 MS.gene068472:CDS
AAGAAGTGAAATGGTAGCTC+TGG 0.489575 6.3:-65043126 None:intergenic
ATTTGCACCGGAACTGTCTC+CGG 0.491985 6.3:-65043615 None:intergenic
CAGTTCGGGTTTGTAAAGCT+GGG 0.506658 6.3:+65043654 MS.gene068472:CDS
GGTTTGTAAAGCTGGGCTCC+GGG 0.520514 6.3:+65043661 MS.gene068472:CDS
CGATGGTAAGGACGGATTGG+TGG 0.521258 6.3:+65043780 MS.gene068472:CDS
ATAATCAACTGAGTAGATTC+AGG 0.526163 6.3:-65044043 None:intergenic
TGGTAAGGACGGATTGGTGG+TGG 0.530541 6.3:+65043783 MS.gene068472:CDS
TGGATCGCCGTTGGTGTCGA+TGG 0.540273 6.3:+65043763 MS.gene068472:CDS
GTTAATGAGACGGCGGTTGA+CGG 0.543320 6.3:-65043186 None:intergenic
TGATCTCGGTTCGATCCCTC+CGG 0.547999 6.3:-65043818 None:intergenic
GGCGCTTCTTCTCGCTCTAA+CGG 0.548606 6.3:+65043161 MS.gene068472:CDS
AAGGACGGATTGGTGGTGGA+AGG 0.550023 6.3:+65043787 MS.gene068472:CDS
GCCGGAGAAGTCATCGGAGA+TGG 0.551507 6.3:+65043323 MS.gene068472:CDS
ACCATCTCCGATGACTTCTC+CGG 0.551868 6.3:-65043324 None:intergenic
TGCGACGGATATCGATGCTC+CGG 0.555954 6.3:-65043503 None:intergenic
CCGTGGAAGTAAATGATGAC+AGG 0.560772 6.3:-65043371 None:intergenic
ATCAAGTTTAATCTCCGCCT+CGG 0.562819 6.3:-65043741 None:intergenic
CTGGCTTTCCAAGGAAGAAG+AGG 0.565695 6.3:-65043107 None:intergenic
TATCCGTCGCAATATGATGA+TGG 0.571005 6.3:+65043515 MS.gene068472:CDS
TGTCGATGGTAAGGACGGAT+TGG 0.572977 6.3:+65043777 MS.gene068472:CDS
TAAACTTGATGGATCGCCGT+TGG 0.573185 6.3:+65043754 MS.gene068472:CDS
GGAAATCCGGATTATCGGGT+TGG 0.574486 6.3:+65043682 MS.gene068472:CDS
GATGACTTCTCCGGCAACAG+TGG 0.577971 6.3:-65043315 None:intergenic
GTTAACGGCAATGTCTTTGG+TGG 0.580688 6.3:-65043258 None:intergenic
ATGACGCGGTGAATGTAAGC+GGG 0.586945 6.3:+65043840 MS.gene068472:CDS
ATGGTAGCTCTGGCTTTCCA+AGG 0.587238 6.3:-65043116 None:intergenic
TGGCGGTGAGGAACGGACCG+AGG 0.589279 6.3:+65043724 MS.gene068472:CDS
GGAAGTAAATGATGACAGGA+AGG 0.590018 6.3:-65043367 None:intergenic
CACCGGAACTGTCTCCGGCA+AGG 0.591057 6.3:-65043610 None:intergenic
GACTGAAGAAGTTAATGAGA+CGG 0.593190 6.3:-65043196 None:intergenic
GTGGAAGGTGTTCTTACCGG+AGG 0.596371 6.3:+65043802 MS.gene068472:CDS
ATGACTTCTCCGGCAACAGT+GGG 0.596379 6.3:-65043314 None:intergenic
TCAGTTGATTATGCAAGTCA+AGG 0.601932 6.3:+65044054 MS.gene068472:CDS
ATCGATGCTCCGGTGTAAGG+CGG 0.602490 6.3:-65043493 None:intergenic
ACTGTTGCCGGAGAAGTCAT+CGG 0.603429 6.3:+65043317 MS.gene068472:CDS
TGTAAGCGGGCCGAATGCGG+AGG 0.609279 6.3:+65043853 MS.gene068472:CDS
ATGATGTGCCAAATTTGCAC+CGG 0.614788 6.3:-65043627 None:intergenic
GAATGTAAGCGGGCCGAATG+CGG 0.618920 6.3:+65043850 MS.gene068472:CDS
GTCCTTACCATCGACACCAA+CGG 0.621799 6.3:-65043770 None:intergenic
GATAACTGAACCCGCCGCCG+TGG 0.621875 6.3:-65043388 None:intergenic
TGGAAGGTGTTCTTACCGGA+GGG 0.627234 6.3:+65043803 MS.gene068472:CDS
GCATCGTGGTAGATTGAAGA+GGG 0.628062 6.3:-65043416 None:intergenic
GGAGAAGTCATCGGAGATGG+TGG 0.629162 6.3:+65043326 MS.gene068472:CDS
GTTGGTGTCGATGGTAAGGA+CGG 0.629245 6.3:+65043772 MS.gene068472:CDS
GTAAATGATGACAGGAAGGG+AGG 0.632046 6.3:-65043363 None:intergenic
TGTCAACTACCGCCTTACAC+CGG 0.636801 6.3:+65043484 MS.gene068472:CDS
AGCATCGTGGTAGATTGAAG+AGG 0.637108 6.3:-65043417 None:intergenic
GAAGTAAATGATGACAGGAA+GGG 0.653090 6.3:-65043366 None:intergenic
TCTCCATCATCATATTGCGA+CGG 0.653123 6.3:-65043518 None:intergenic
GTCGCAATATGATGATGGAG+AGG 0.653832 6.3:+65043520 MS.gene068472:CDS
CATGACGCGGTGAATGTAAG+CGG 0.656915 6.3:+65043839 MS.gene068472:CDS
GTTGATTGAATATCCAAACA+TGG 0.659983 6.3:+65043991 MS.gene068472:CDS
TTTATGTCGTAGACTCTGCA+GGG 0.666204 6.3:+65043439 MS.gene068472:CDS
CGGTGAGGAACGGACCGAGG+CGG 0.670710 6.3:+65043727 MS.gene068472:CDS
AACGGGAGTAGCATTAGGTG+AGG 0.672219 6.3:-65043225 None:intergenic
TGAAGAAGTTAATGAGACGG+CGG 0.714279 6.3:-65043193 None:intergenic
GTCATCATTTACTTCCACGG+CGG 0.732442 6.3:+65043374 MS.gene068472:CDS
ATCGAACCGAGATCATGACG+CGG 0.753530 6.3:+65043826 MS.gene068472:CDS
GTCTACGACATAAAGCATCG+TGG 0.765575 6.3:-65043430 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TAAAAAACATGAACCATGTT+TGG - chr6.3:65044007-65044026 None:intergenic 25.0%
! TAAAAGTGAAAGAAGTGAAA+TGG - chr6.3:65043138-65043157 None:intergenic 25.0%
!! ATGATTGGTTAAAGAAATGT+GGG + chr6.3:65043957-65043976 MS.gene068472:CDS 25.0%
!! TATGATTGGTTAAAGAAATG+TGG + chr6.3:65043956-65043975 MS.gene068472:CDS 25.0%
!!! ATTTTTGGAAGAGAATAGAA+AGG + chr6.3:65043553-65043572 MS.gene068472:CDS 25.0%
!!! TCACTTCTTTCACTTTTATT+TGG + chr6.3:65043140-65043159 MS.gene068472:CDS 25.0%
ATAATCAACTGAGTAGATTC+AGG - chr6.3:65044046-65044065 None:intergenic 30.0%
GATTTGATCCTTTGAATGAT+TGG + chr6.3:65043921-65043940 MS.gene068472:CDS 30.0%
GTTGATTGAATATCCAAACA+TGG + chr6.3:65043991-65044010 MS.gene068472:CDS 30.0%
! AGAGAATAGAAAGGTTTTAC+CGG + chr6.3:65043562-65043581 MS.gene068472:CDS 30.0%
!! ACGAAACCAAACGTTATTTT+CGG - chr6.3:65043285-65043304 None:intergenic 30.0%
CCAATAAAAACAAGCGTATC+CGG - chr6.3:65043899-65043918 None:intergenic 35.0%
CTTTGAATGATTGGCAAAAG+AGG + chr6.3:65043930-65043949 MS.gene068472:CDS 35.0%
GAAGTAAATGATGACAGGAA+GGG - chr6.3:65043369-65043388 None:intergenic 35.0%
GACTGAAGAAGTTAATGAGA+CGG - chr6.3:65043199-65043218 None:intergenic 35.0%
TCAGTTGATTATGCAAGTCA+AGG + chr6.3:65044054-65044073 MS.gene068472:CDS 35.0%
TTAACGCCGAAAATAACGTT+TGG + chr6.3:65043276-65043295 MS.gene068472:CDS 35.0%
! CTCTTTTGCCAATCATTCAA+AGG - chr6.3:65043932-65043951 None:intergenic 35.0%
! TTTGACACATCAGCATTTTC+CGG - chr6.3:65043584-65043603 None:intergenic 35.0%
!! AACGTTATTTTCGGCGTTAA+CGG - chr6.3:65043276-65043295 None:intergenic 35.0%
!! GGCAAAAGAGGTATTATGAT+TGG + chr6.3:65043942-65043961 MS.gene068472:CDS 35.0%
!!! GATACGCTTGTTTTTATTGG+TGG + chr6.3:65043899-65043918 MS.gene068472:CDS 35.0%
AAGAAGTGAAATGGTAGCTC+TGG - chr6.3:65043129-65043148 None:intergenic 40.0%
ATCAAGTTTAATCTCCGCCT+CGG - chr6.3:65043744-65043763 None:intergenic 40.0%
ATGATGTGCCAAATTTGCAC+CGG - chr6.3:65043630-65043649 None:intergenic 40.0%
CCTGTCATCATTTACTTCCA+CGG + chr6.3:65043371-65043390 MS.gene068472:CDS 40.0%
GGAAGTAAATGATGACAGGA+AGG - chr6.3:65043370-65043389 None:intergenic 40.0%
GTGTCAAAATGTTTCCTTGC+CGG + chr6.3:65043596-65043615 MS.gene068472:CDS 40.0%
TATCCGTCGCAATATGATGA+TGG + chr6.3:65043515-65043534 MS.gene068472:CDS 40.0%
TCTCCATCATCATATTGCGA+CGG - chr6.3:65043521-65043540 None:intergenic 40.0%
TGAAGAAGTTAATGAGACGG+CGG - chr6.3:65043196-65043215 None:intergenic 40.0%
TTTATGTCGTAGACTCTGCA+GGG + chr6.3:65043439-65043458 MS.gene068472:CDS 40.0%
! AGAGGCTGTGCTGAAATTTT+TGG + chr6.3:65043538-65043557 MS.gene068472:CDS 40.0%
! TTTGTCGGGTTTGGATTTTC+CGG + chr6.3:65043877-65043896 MS.gene068472:CDS 40.0%
!!! CCGGATACGCTTGTTTTTAT+TGG + chr6.3:65043896-65043915 MS.gene068472:CDS 40.0%
!!! GTATCCATTCAGCCGTTTTT+TGG + chr6.3:65043704-65043723 MS.gene068472:CDS 40.0%
ACTCAACACCTCTTCTTCCT+TGG + chr6.3:65043099-65043118 MS.gene068472:CDS 45.0%
AGACAGTTCCGGTGCAAATT+TGG + chr6.3:65043619-65043638 MS.gene068472:CDS 45.0%
AGCATCGTGGTAGATTGAAG+AGG - chr6.3:65043420-65043439 None:intergenic 45.0%
CCGTGGAAGTAAATGATGAC+AGG - chr6.3:65043374-65043393 None:intergenic 45.0%
CCTAATGCTACTCCCGTTAA+CGG + chr6.3:65043230-65043249 MS.gene068472:CDS 45.0%
CTTTATGTCGTAGACTCTGC+AGG + chr6.3:65043438-65043457 MS.gene068472:CDS 45.0%
GAGGCGGAGATTAAACTTGA+TGG + chr6.3:65043743-65043762 MS.gene068472:CDS 45.0%
GCATCGTGGTAGATTGAAGA+GGG - chr6.3:65043419-65043438 None:intergenic 45.0%
GTAAATGATGACAGGAAGGG+AGG - chr6.3:65043366-65043385 None:intergenic 45.0%
GTCATCATTTACTTCCACGG+CGG + chr6.3:65043374-65043393 MS.gene068472:CDS 45.0%
GTTAACGGCAATGTCTTTGG+TGG - chr6.3:65043261-65043280 None:intergenic 45.0%
TGAGTAGATTCAGGCAGATC+AGG - chr6.3:65044037-65044056 None:intergenic 45.0%
TGGATACCAACCCGATAATC+CGG - chr6.3:65043691-65043710 None:intergenic 45.0%
TGGCACATCATCTTGCAGTT+CGG + chr6.3:65043639-65043658 MS.gene068472:CDS 45.0%
TTTGGTGGAAACGCCGTTAA+CGG - chr6.3:65043246-65043265 None:intergenic 45.0%
! CAGTTCGGGTTTGTAAAGCT+GGG + chr6.3:65043654-65043673 MS.gene068472:CDS 45.0%
! TAAACTTGATGGATCGCCGT+TGG + chr6.3:65043754-65043773 MS.gene068472:CDS 45.0%
!! GTCGCAATATGATGATGGAG+AGG + chr6.3:65043520-65043539 MS.gene068472:CDS 45.0%
!! GTCTACGACATAAAGCATCG+TGG - chr6.3:65043433-65043452 None:intergenic 45.0%
!!! TCCATTCAGCCGTTTTTTGG+CGG + chr6.3:65043707-65043726 MS.gene068472:CDS 45.0%
AACGGGAGTAGCATTAGGTG+AGG - chr6.3:65043228-65043247 None:intergenic 50.0%
ACCATCTCCGATGACTTCTC+CGG - chr6.3:65043327-65043346 None:intergenic 50.0%
ACCCGATAATCCGGATTTCC+CGG - chr6.3:65043682-65043701 None:intergenic 50.0%
ACCGCCAAAAAACGGCTGAA+TGG - chr6.3:65043711-65043730 None:intergenic 50.0%
ACTGTTGCCGGAGAAGTCAT+CGG + chr6.3:65043317-65043336 MS.gene068472:CDS 50.0%
ATCATTTACTTCCACGGCGG+CGG + chr6.3:65043377-65043396 MS.gene068472:CDS 50.0%
ATCGAACCGAGATCATGACG+CGG + chr6.3:65043826-65043845 MS.gene068472:CDS 50.0%
ATGACGCGGTGAATGTAAGC+GGG + chr6.3:65043840-65043859 MS.gene068472:CDS 50.0%
ATGACTTCTCCGGCAACAGT+GGG - chr6.3:65043317-65043336 None:intergenic 50.0%
ATTTGCACCGGAACTGTCTC+CGG - chr6.3:65043618-65043637 None:intergenic 50.0%
CATGACGCGGTGAATGTAAG+CGG + chr6.3:65043839-65043858 MS.gene068472:CDS 50.0%
CATTCACCGCGTCATGATCT+CGG - chr6.3:65043835-65043854 None:intergenic 50.0%
CCGTTAACGGGAGTAGCATT+AGG - chr6.3:65043233-65043252 None:intergenic 50.0%
CGTTCCTCACCGCCAAAAAA+CGG - chr6.3:65043719-65043738 None:intergenic 50.0%
CTCCGGGAAATCCGGATTAT+CGG + chr6.3:65043677-65043696 MS.gene068472:CDS 50.0%
CTCTTTACTCCCACTGTTGC+CGG + chr6.3:65043305-65043324 MS.gene068472:CDS 50.0%
GATATCGATGCTCCGGTGTA+AGG - chr6.3:65043499-65043518 None:intergenic 50.0%
GGAAATCCGGATTATCGGGT+TGG + chr6.3:65043682-65043701 MS.gene068472:CDS 50.0%
GGCACATCATCTTGCAGTTC+GGG + chr6.3:65043640-65043659 MS.gene068472:CDS 50.0%
GGCGTTAACGGCAATGTCTT+TGG - chr6.3:65043264-65043283 None:intergenic 50.0%
GTCCTTACCATCGACACCAA+CGG - chr6.3:65043773-65043792 None:intergenic 50.0%
GTTAATGAGACGGCGGTTGA+CGG - chr6.3:65043189-65043208 None:intergenic 50.0%
TCCGGGAAATCCGGATTATC+GGG + chr6.3:65043678-65043697 MS.gene068472:CDS 50.0%
TGTCAACTACCGCCTTACAC+CGG + chr6.3:65043484-65043503 MS.gene068472:CDS 50.0%
TGTCGATGGTAAGGACGGAT+TGG + chr6.3:65043777-65043796 MS.gene068472:CDS 50.0%
TTGGTGGAAACGCCGTTAAC+GGG - chr6.3:65043245-65043264 None:intergenic 50.0%
! CTGGCTTTCCAAGGAAGAAG+AGG - chr6.3:65043110-65043129 None:intergenic 50.0%
! GCAGTTCGGGTTTGTAAAGC+TGG + chr6.3:65043653-65043672 MS.gene068472:CDS 50.0%
!! ATGGTAGCTCTGGCTTTCCA+AGG - chr6.3:65043119-65043138 None:intergenic 50.0%
!! GTGGTGGAAGGTGTTCTTAC+CGG + chr6.3:65043799-65043818 MS.gene068472:CDS 50.0%
!! GTTGGTGTCGATGGTAAGGA+CGG + chr6.3:65043772-65043791 MS.gene068472:CDS 50.0%
!! TGGAAGGTGTTCTTACCGGA+GGG + chr6.3:65043803-65043822 MS.gene068472:CDS 50.0%
!!! CGTTTTTTGGCGGTGAGGAA+CGG + chr6.3:65043717-65043736 MS.gene068472:CDS 50.0%
ATCGATGCTCCGGTGTAAGG+CGG - chr6.3:65043496-65043515 None:intergenic 55.0%
CCCGACAAATCCTCCGCATT+CGG - chr6.3:65043866-65043885 None:intergenic 55.0%
CCGAATGCGGAGGATTTGTC+GGG + chr6.3:65043863-65043882 MS.gene068472:CDS 55.0%
GAATGTAAGCGGGCCGAATG+CGG + chr6.3:65043850-65043869 MS.gene068472:CDS 55.0%
GATGACTTCTCCGGCAACAG+TGG - chr6.3:65043318-65043337 None:intergenic 55.0%
GCCGAATGCGGAGGATTTGT+CGG + chr6.3:65043862-65043881 MS.gene068472:CDS 55.0%
GGAGAAGTCATCGGAGATGG+TGG + chr6.3:65043326-65043345 MS.gene068472:CDS 55.0%
GGCGCTTCTTCTCGCTCTAA+CGG + chr6.3:65043161-65043180 MS.gene068472:CDS 55.0%
GGGTTTGTAAAGCTGGGCTC+CGG + chr6.3:65043660-65043679 MS.gene068472:CDS 55.0%
GGTTTGTAAAGCTGGGCTCC+GGG + chr6.3:65043661-65043680 MS.gene068472:CDS 55.0%
TCATTTACTTCCACGGCGGC+GGG + chr6.3:65043378-65043397 MS.gene068472:CDS 55.0%
TGCGACGGATATCGATGCTC+CGG - chr6.3:65043506-65043525 None:intergenic 55.0%
TGCGGAGGATTTGTCGGGTT+TGG + chr6.3:65043868-65043887 MS.gene068472:CDS 55.0%
TTCCTTGCCGGAGACAGTTC+CGG + chr6.3:65043608-65043627 MS.gene068472:CDS 55.0%
! GACAGGAAGGGAGGCTGTTT+TGG - chr6.3:65043357-65043376 None:intergenic 55.0%
! TGATCTCGGTTCGATCCCTC+CGG - chr6.3:65043821-65043840 None:intergenic 55.0%
!! AAGGACGGATTGGTGGTGGA+AGG + chr6.3:65043787-65043806 MS.gene068472:CDS 55.0%
!! AGGAAGGGAGGCTGTTTTGG+TGG - chr6.3:65043354-65043373 None:intergenic 55.0%
!! CGATGGTAAGGACGGATTGG+TGG + chr6.3:65043780-65043799 MS.gene068472:CDS 55.0%
!! GTGGAAGGTGTTCTTACCGG+AGG + chr6.3:65043802-65043821 MS.gene068472:CDS 55.0%
!! TGGTAAGGACGGATTGGTGG+TGG + chr6.3:65043783-65043802 MS.gene068472:CDS 55.0%
!!! TCAGCCGTTTTTTGGCGGTG+AGG + chr6.3:65043712-65043731 MS.gene068472:CDS 55.0%
AAGCTGGGCTCCGGGAAATC+CGG + chr6.3:65043669-65043688 MS.gene068472:CDS 60.0%
GCCGGAGAAGTCATCGGAGA+TGG + chr6.3:65043323-65043342 MS.gene068472:CDS 60.0%
!! CGCCGTTGGTGTCGATGGTA+AGG + chr6.3:65043768-65043787 MS.gene068472:CDS 60.0%
!! TGGATCGCCGTTGGTGTCGA+TGG + chr6.3:65043763-65043782 MS.gene068472:CDS 60.0%
CACCGGAACTGTCTCCGGCA+AGG - chr6.3:65043613-65043632 None:intergenic 65.0%
GATAACTGAACCCGCCGCCG+TGG - chr6.3:65043391-65043410 None:intergenic 65.0%
TGTAAGCGGGCCGAATGCGG+AGG + chr6.3:65043853-65043872 MS.gene068472:CDS 65.0%
CGGTGAGGAACGGACCGAGG+CGG + chr6.3:65043727-65043746 MS.gene068472:CDS 70.0%
TGGCGGTGAGGAACGGACCG+AGG + chr6.3:65043724-65043743 MS.gene068472:CDS 70.0%


Chromosome Type Strat End Strand Name
chr6.3 gene 65043092 65044108 65043092 ID=MS.gene068472
chr6.3 mRNA 65043092 65044108 65043092 ID=MS.gene068472.t1;Parent=MS.gene068472
chr6.3 exon 65043092 65044108 65043092 ID=MS.gene068472.t1.exon1;Parent=MS.gene068472.t1
chr6.3 CDS 65043092 65044108 65043092 ID=cds.MS.gene068472.t1;Parent=MS.gene068472.t1
Gene Sequence

>MS.gene068472

ATGTCAGACTCAACACCTCTTCTTCCTTGGAAAGCCAGAGCTACCATTTCACTTCTTTCACTTTTATTTGGCGCTTCTTCTCGCTCTAACGGCACCGTCAACCGCCGTCTCATTAACTTCTTCAGTCTCAATGCCTCACCTAATGCTACTCCCGTTAACGGCGTTTCCACCAAAGACATTGCCGTTAACGCCGAAAATAACGTTTGGTTTCGTCTCTTTACTCCCACTGTTGCCGGAGAAGTCATCGGAGATGGTGGTGCCACCAAAACAGCCTCCCTTCCTGTCATCATTTACTTCCACGGCGGCGGGTTCAGTTATCTTTCTCCCTCTTCAATCTACCACGATGCTTTATGTCGTAGACTCTGCAGGGAAGTTTTTGCTGTTGTCGTCTCTGTCAACTACCGCCTTACACCGGAGCATCGATATCCGTCGCAATATGATGATGGAGAGGCTGTGCTGAAATTTTTGGAAGAGAATAGAAAGGTTTTACCGGAAAATGCTGATGTGTCAAAATGTTTCCTTGCCGGAGACAGTTCCGGTGCAAATTTGGCACATCATCTTGCAGTTCGGGTTTGTAAAGCTGGGCTCCGGGAAATCCGGATTATCGGGTTGGTATCCATTCAGCCGTTTTTTGGCGGTGAGGAACGGACCGAGGCGGAGATTAAACTTGATGGATCGCCGTTGGTGTCGATGGTAAGGACGGATTGGTGGTGGAAGGTGTTCTTACCGGAGGGATCGAACCGAGATCATGACGCGGTGAATGTAAGCGGGCCGAATGCGGAGGATTTGTCGGGTTTGGATTTTCCGGATACGCTTGTTTTTATTGGTGGATTTGATCCTTTGAATGATTGGCAAAAGAGGTATTATGATTGGTTAAAGAAATGTGGGAAAAAAGCTGAGTTGATTGAATATCCAAACATGGTTCATGTTTTTTATGTTTTTCCTGATCTGCCTGAATCTACTCAGTTGATTATGCAAGTCAAGGAGTTTGTCAACAAAGTCTCTAGTTCTAAATGA
Protein sequence

>MS.gene068472.t1

MSDSTPLLPWKARATISLLSLLFGASSRSNGTVNRRLINFFSLNASPNATPVNGVSTKDIAVNAENNVWFRLFTPTVAGEVIGDGGATKTASLPVIIYFHGGGFSYLSPSSIYHDALCRRLCREVFAVVVSVNYRLTPEHRYPSQYDDGEAVLKFLEENRKVLPENADVSKCFLAGDSSGANLAHHLAVRVCKAGLREIRIIGLVSIQPFFGGEERTEAEIKLDGSPLVSMVRTDWWWKVFLPEGSNRDHDAVNVSGPNAEDLSGLDFPDTLVFIGGFDPLNDWQKRYYDWLKKCGKKAELIEYPNMVHVFYVFPDLPESTQLIMQVKEFVNKVSSSK