Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069275.t1 | AES82241.1 | 63.1 | 529 | 142 | 5 | 1 | 481 | 1 | 524 | 2.90E-182 | 648.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069275.t1 | G7KTR1 | 63.1 | 529 | 142 | 5 | 1 | 481 | 1 | 524 | 2.1e-182 | 648.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049262 | MS.gene069275 | 0.825254 | 5.18E-54 | -1.69E-46 |
| MS.gene049853 | MS.gene069275 | 0.823534 | 1.32E-53 | -1.69E-46 |
| MS.gene051575 | MS.gene069275 | 0.822702 | 2.06E-53 | -1.69E-46 |
| MS.gene052447 | MS.gene069275 | 0.844773 | 6.14E-59 | -1.69E-46 |
| MS.gene05329 | MS.gene069275 | 0.826595 | 2.49E-54 | -1.69E-46 |
| MS.gene055017 | MS.gene069275 | 0.803905 | 2.79E-49 | -1.69E-46 |
| MS.gene055056 | MS.gene069275 | 0.815145 | 1.07E-51 | -1.69E-46 |
| MS.gene055058 | MS.gene069275 | 0.807639 | 4.58E-50 | -1.69E-46 |
| MS.gene05531 | MS.gene069275 | 0.814027 | 1.90E-51 | -1.69E-46 |
| MS.gene055952 | MS.gene069275 | 0.810569 | 1.08E-50 | -1.69E-46 |
| MS.gene058515 | MS.gene069275 | 0.800076 | 1.71E-48 | -1.69E-46 |
| MS.gene059458 | MS.gene069275 | 0.821229 | 4.51E-53 | -1.69E-46 |
| MS.gene059584 | MS.gene069275 | 0.80936 | 1.97E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069275.t1 | MTR_7g110100 | 63.516 | 529 | 140 | 6 | 1 | 481 | 1 | 524 | 0.0 | 660 |
| MS.gene069275.t1 | MTR_3g452170 | 63.992 | 486 | 135 | 6 | 1 | 481 | 1 | 451 | 0.0 | 610 |
| MS.gene069275.t1 | MTR_1g105785 | 51.515 | 528 | 207 | 4 | 1 | 481 | 1 | 526 | 0.0 | 546 |
| MS.gene069275.t1 | MTR_7g051400 | 47.901 | 524 | 202 | 6 | 1 | 477 | 1 | 500 | 1.12e-159 | 464 |
| MS.gene069275.t1 | MTR_8g465040 | 85.965 | 171 | 24 | 0 | 1 | 171 | 1 | 171 | 3.62e-102 | 303 |
| MS.gene069275.t1 | MTR_4g032565 | 53.846 | 286 | 69 | 4 | 258 | 482 | 2 | 285 | 1.88e-92 | 283 |
| MS.gene069275.t1 | MTR_4g032585 | 53.497 | 286 | 70 | 4 | 258 | 482 | 2 | 285 | 1.11e-91 | 280 |
| MS.gene069275.t1 | MTR_1g052715 | 49.194 | 248 | 125 | 1 | 42 | 288 | 1 | 248 | 1.66e-81 | 256 |
| MS.gene069275.t1 | MTR_7g451880 | 42.807 | 285 | 163 | 0 | 1 | 285 | 2 | 286 | 5.30e-81 | 254 |
| MS.gene069275.t1 | MTR_7g024060 | 42.807 | 285 | 163 | 0 | 1 | 285 | 1 | 285 | 4.50e-80 | 252 |
| MS.gene069275.t1 | MTR_6g087820 | 42.807 | 285 | 163 | 0 | 1 | 285 | 1 | 285 | 4.50e-80 | 252 |
| MS.gene069275.t1 | MTR_5g081190 | 42.807 | 285 | 163 | 0 | 1 | 285 | 1 | 285 | 4.50e-80 | 252 |
| MS.gene069275.t1 | MTR_5g091480 | 42.807 | 285 | 163 | 0 | 1 | 285 | 1 | 285 | 4.50e-80 | 252 |
| MS.gene069275.t1 | MTR_5g056290 | 42.807 | 285 | 163 | 0 | 1 | 285 | 1 | 285 | 4.50e-80 | 252 |
| MS.gene069275.t1 | MTR_3g031190 | 42.807 | 285 | 163 | 0 | 1 | 285 | 1 | 285 | 4.50e-80 | 252 |
| MS.gene069275.t1 | MTR_2g005490 | 42.807 | 285 | 163 | 0 | 1 | 285 | 1 | 285 | 4.50e-80 | 252 |
| MS.gene069275.t1 | MTR_2g010570 | 42.807 | 285 | 163 | 0 | 1 | 285 | 1 | 285 | 4.50e-80 | 252 |
| MS.gene069275.t1 | MTR_4g058660 | 42.456 | 285 | 164 | 0 | 1 | 285 | 1 | 285 | 6.99e-80 | 251 |
| MS.gene069275.t1 | MTR_5g030110 | 42.807 | 285 | 163 | 0 | 1 | 285 | 1 | 285 | 9.04e-80 | 251 |
| MS.gene069275.t1 | MTR_2g007410 | 42.807 | 285 | 163 | 0 | 1 | 285 | 1 | 285 | 9.04e-80 | 251 |
| MS.gene069275.t1 | MTR_7g074180 | 41.404 | 285 | 167 | 0 | 1 | 285 | 1 | 285 | 2.27e-77 | 245 |
| MS.gene069275.t1 | MTR_8g446640 | 43.182 | 264 | 150 | 0 | 22 | 285 | 3 | 266 | 2.30e-74 | 236 |
| MS.gene069275.t1 | MTR_1g023370 | 41.053 | 285 | 149 | 2 | 1 | 285 | 1 | 266 | 4.61e-72 | 231 |
| MS.gene069275.t1 | MTR_2g010270 | 41.392 | 273 | 151 | 1 | 22 | 285 | 3 | 275 | 1.07e-71 | 230 |
| MS.gene069275.t1 | MTR_1g011490 | 39.649 | 285 | 163 | 1 | 1 | 285 | 1 | 276 | 1.89e-69 | 224 |
| MS.gene069275.t1 | MTR_8g005940 | 39.649 | 285 | 139 | 1 | 1 | 285 | 1 | 252 | 6.82e-67 | 217 |
| MS.gene069275.t1 | MTR_3g015660 | 41.736 | 242 | 141 | 0 | 1 | 242 | 1 | 242 | 1.22e-66 | 214 |
| MS.gene069275.t1 | MTR_0048s0080 | 34.759 | 374 | 176 | 6 | 137 | 480 | 3 | 338 | 5.16e-63 | 208 |
| MS.gene069275.t1 | MTR_1g051235 | 56.395 | 172 | 74 | 1 | 1 | 171 | 1 | 172 | 7.12e-63 | 202 |
| MS.gene069275.t1 | MTR_7g045450 | 36.667 | 270 | 156 | 1 | 1 | 270 | 1 | 255 | 2.00e-61 | 201 |
| MS.gene069275.t1 | MTR_6g073570 | 36.667 | 270 | 156 | 1 | 1 | 270 | 1 | 255 | 2.00e-61 | 201 |
| MS.gene069275.t1 | MTR_5g045850 | 38.947 | 285 | 141 | 6 | 1 | 285 | 1 | 252 | 6.01e-60 | 199 |
| MS.gene069275.t1 | MTR_1g082860 | 39.914 | 233 | 131 | 1 | 1 | 233 | 1 | 224 | 2.52e-57 | 191 |
| MS.gene069275.t1 | MTR_1g492690 | 36.570 | 309 | 146 | 5 | 187 | 460 | 1 | 294 | 2.76e-54 | 186 |
| MS.gene069275.t1 | MTR_5g012180 | 37.544 | 285 | 116 | 6 | 1 | 285 | 1 | 223 | 2.00e-53 | 181 |
| MS.gene069275.t1 | MTR_0105s0080 | 38.028 | 213 | 107 | 1 | 22 | 234 | 3 | 190 | 6.54e-44 | 155 |
| MS.gene069275.t1 | MTR_4g017450 | 52.206 | 136 | 64 | 1 | 1 | 136 | 1 | 135 | 2.17e-43 | 150 |
| MS.gene069275.t1 | MTR_8g064300 | 56.081 | 148 | 57 | 2 | 339 | 481 | 165 | 309 | 5.19e-43 | 154 |
| MS.gene069275.t1 | MTR_3g046650 | 53.906 | 128 | 47 | 2 | 242 | 359 | 77 | 202 | 2.60e-42 | 150 |
| MS.gene069275.t1 | MTR_5g071020 | 34.386 | 285 | 90 | 5 | 1 | 285 | 1 | 188 | 2.86e-42 | 150 |
| MS.gene069275.t1 | MTR_5g019960 | 37.696 | 191 | 117 | 2 | 53 | 242 | 59 | 248 | 7.26e-42 | 149 |
| MS.gene069275.t1 | MTR_3g036220 | 32.632 | 285 | 116 | 4 | 1 | 285 | 1 | 209 | 1.31e-41 | 149 |
| MS.gene069275.t1 | MTR_6g465570 | 41.212 | 165 | 97 | 0 | 5 | 169 | 1 | 165 | 3.11e-41 | 145 |
| MS.gene069275.t1 | MTR_5g093790 | 55.405 | 148 | 58 | 2 | 339 | 481 | 239 | 383 | 8.52e-41 | 150 |
| MS.gene069275.t1 | MTR_7g051840 | 46.875 | 128 | 65 | 1 | 44 | 171 | 1 | 125 | 4.59e-35 | 127 |
| MS.gene069275.t1 | MTR_2g040680 | 34.034 | 238 | 101 | 6 | 243 | 480 | 61 | 242 | 9.90e-32 | 122 |
| MS.gene069275.t1 | MTR_4g036240 | 28.319 | 339 | 225 | 9 | 1 | 332 | 1 | 328 | 6.82e-31 | 125 |
| MS.gene069275.t1 | MTR_8g062030 | 25.527 | 427 | 266 | 10 | 8 | 388 | 8 | 428 | 6.13e-30 | 123 |
| MS.gene069275.t1 | MTR_1g075850 | 25.735 | 408 | 266 | 11 | 1 | 388 | 1 | 391 | 1.09e-29 | 122 |
| MS.gene069275.t1 | MTR_6g024030 | 50.495 | 101 | 50 | 0 | 140 | 240 | 60 | 160 | 1.63e-29 | 116 |
| MS.gene069275.t1 | MTR_5g078250 | 23.898 | 431 | 281 | 9 | 1 | 388 | 1 | 427 | 2.61e-29 | 120 |
| MS.gene069275.t1 | MTR_7g096440 | 35.152 | 165 | 107 | 0 | 51 | 215 | 4 | 168 | 2.74e-29 | 116 |
| MS.gene069275.t1 | MTR_2g048560 | 24.779 | 452 | 289 | 8 | 1 | 405 | 1 | 448 | 3.03e-28 | 118 |
| MS.gene069275.t1 | MTR_7g039300 | 23.588 | 301 | 142 | 4 | 1 | 270 | 1 | 244 | 3.40e-28 | 112 |
| MS.gene069275.t1 | MTR_5g080500 | 63.043 | 92 | 33 | 1 | 1 | 91 | 1 | 92 | 5.68e-28 | 109 |
| MS.gene069275.t1 | MTR_3g007260 | 36.875 | 160 | 75 | 2 | 53 | 212 | 38 | 171 | 8.71e-28 | 109 |
| MS.gene069275.t1 | MTR_2g008650 | 23.256 | 559 | 336 | 16 | 5 | 481 | 7 | 554 | 7.03e-27 | 114 |
| MS.gene069275.t1 | MTR_8g479260 | 23.256 | 559 | 336 | 16 | 5 | 481 | 7 | 554 | 8.15e-27 | 114 |
| MS.gene069275.t1 | MTR_6g464080 | 27.532 | 316 | 211 | 9 | 19 | 325 | 19 | 325 | 9.82e-27 | 113 |
| MS.gene069275.t1 | MTR_2g435900 | 38.028 | 142 | 58 | 1 | 69 | 210 | 1 | 112 | 4.41e-26 | 102 |
| MS.gene069275.t1 | MTR_2g450060 | 26.814 | 317 | 210 | 10 | 8 | 312 | 12 | 318 | 5.70e-26 | 111 |
| MS.gene069275.t1 | MTR_8g076570 | 27.333 | 300 | 206 | 8 | 19 | 312 | 19 | 312 | 3.08e-24 | 107 |
| MS.gene069275.t1 | MTR_3g449160 | 35.915 | 142 | 61 | 1 | 69 | 210 | 1 | 112 | 3.50e-24 | 97.4 |
| MS.gene069275.t1 | MTR_5g057125 | 28.417 | 278 | 162 | 5 | 204 | 453 | 1 | 269 | 4.06e-24 | 102 |
| MS.gene069275.t1 | MTR_2g054710 | 28.319 | 226 | 159 | 3 | 5 | 229 | 7 | 230 | 6.95e-24 | 101 |
| MS.gene069275.t1 | MTR_4g085760 | 25.472 | 318 | 217 | 10 | 20 | 325 | 26 | 335 | 1.09e-23 | 104 |
| MS.gene069275.t1 | MTR_2g019040 | 40.769 | 130 | 69 | 1 | 156 | 285 | 8 | 129 | 1.30e-23 | 99.8 |
| MS.gene069275.t1 | MTR_3g056240 | 29.108 | 213 | 148 | 3 | 1 | 212 | 1 | 211 | 2.13e-22 | 98.2 |
| MS.gene069275.t1 | MTR_3g056270 | 29.384 | 211 | 146 | 3 | 1 | 210 | 1 | 209 | 4.74e-22 | 100 |
| MS.gene069275.t1 | MTR_3g056270 | 27.517 | 298 | 198 | 9 | 42 | 332 | 201 | 487 | 7.06e-21 | 96.7 |
| MS.gene069275.t1 | MTR_3g055660 | 23.053 | 321 | 232 | 9 | 20 | 331 | 47 | 361 | 5.57e-22 | 99.4 |
| MS.gene069275.t1 | MTR_4g014890 | 23.053 | 321 | 232 | 9 | 20 | 331 | 47 | 361 | 7.02e-22 | 99.0 |
| MS.gene069275.t1 | MTR_7g070110 | 33.333 | 114 | 72 | 1 | 18 | 131 | 6 | 115 | 2.60e-21 | 89.7 |
| MS.gene069275.t1 | MTR_1g043690 | 25.000 | 308 | 208 | 8 | 19 | 316 | 26 | 320 | 2.94e-21 | 97.4 |
| MS.gene069275.t1 | MTR_5g004860 | 24.561 | 342 | 233 | 12 | 19 | 349 | 19 | 346 | 1.66e-20 | 94.7 |
| MS.gene069275.t1 | MTR_6g059860 | 22.430 | 321 | 234 | 9 | 20 | 331 | 41 | 355 | 4.40e-20 | 93.6 |
| MS.gene069275.t1 | MTR_8g024070 | 43.373 | 83 | 47 | 0 | 1 | 83 | 1 | 83 | 7.29e-19 | 81.6 |
| MS.gene069275.t1 | MTR_3g108500 | 42.647 | 136 | 54 | 5 | 338 | 454 | 58 | 188 | 8.76e-19 | 86.7 |
| MS.gene069275.t1 | MTR_5g053590 | 26.220 | 328 | 219 | 9 | 1 | 312 | 1 | 321 | 1.43e-18 | 89.0 |
| MS.gene069275.t1 | MTR_6g055250 | 25.442 | 283 | 195 | 9 | 44 | 316 | 1 | 277 | 9.28e-18 | 85.5 |
| MS.gene069275.t1 | MTR_1g110330 | 30.986 | 142 | 75 | 1 | 1 | 142 | 2 | 120 | 3.36e-17 | 80.5 |
| MS.gene069275.t1 | MTR_1g094230 | 24.188 | 277 | 190 | 6 | 8 | 280 | 8 | 268 | 8.41e-17 | 81.3 |
| MS.gene069275.t1 | MTR_6g039240 | 23.827 | 277 | 191 | 6 | 8 | 280 | 8 | 268 | 1.79e-16 | 80.1 |
| MS.gene069275.t1 | MTR_8g463820 | 23.827 | 277 | 191 | 6 | 8 | 280 | 8 | 268 | 1.98e-16 | 80.1 |
| MS.gene069275.t1 | MTR_8g027910 | 26.939 | 245 | 155 | 7 | 8 | 240 | 18 | 250 | 2.75e-16 | 79.3 |
| MS.gene069275.t1 | MTR_8g088810 | 25.168 | 298 | 207 | 6 | 8 | 293 | 8 | 301 | 3.71e-16 | 79.7 |
| MS.gene069275.t1 | MTR_2g060880 | 27.016 | 248 | 161 | 7 | 15 | 258 | 45 | 276 | 6.31e-16 | 80.5 |
| MS.gene069275.t1 | MTR_1g101230 | 39.773 | 88 | 51 | 1 | 1 | 86 | 1 | 88 | 4.04e-15 | 73.9 |
| MS.gene069275.t1 | MTR_1g011320 | 31.333 | 150 | 97 | 4 | 67 | 212 | 77 | 224 | 9.30e-14 | 72.4 |
| MS.gene069275.t1 | MTR_4g070090 | 25.359 | 209 | 141 | 4 | 19 | 214 | 34 | 240 | 1.00e-13 | 73.6 |
| MS.gene069275.t1 | MTR_4g060433 | 27.111 | 225 | 127 | 7 | 264 | 480 | 8 | 203 | 3.32e-13 | 68.9 |
| MS.gene069275.t1 | MTR_1g115520 | 30.894 | 123 | 78 | 2 | 286 | 401 | 4 | 126 | 3.47e-13 | 67.4 |
| MS.gene069275.t1 | MTR_5g041170 | 26.337 | 243 | 154 | 11 | 122 | 349 | 21 | 253 | 4.68e-13 | 71.2 |
| MS.gene069275.t1 | MTR_3g068135 | 39.175 | 97 | 48 | 3 | 242 | 338 | 38 | 123 | 5.36e-13 | 68.2 |
| MS.gene069275.t1 | MTR_6g069460 | 41.573 | 89 | 51 | 1 | 18 | 105 | 52 | 140 | 1.29e-12 | 65.9 |
| MS.gene069275.t1 | MTR_4g070160 | 26.437 | 174 | 125 | 3 | 62 | 233 | 1 | 173 | 5.30e-12 | 65.9 |
| MS.gene069275.t1 | MTR_2g048550 | 23.235 | 340 | 242 | 8 | 1 | 332 | 1 | 329 | 1.11e-11 | 67.4 |
| MS.gene069275.t1 | MTR_2g055290 | 24.528 | 212 | 128 | 5 | 1 | 211 | 1 | 181 | 4.66e-11 | 62.4 |
| MS.gene069275.t1 | MTR_2g062200 | 27.174 | 184 | 120 | 5 | 44 | 223 | 1 | 174 | 6.03e-11 | 62.0 |
| MS.gene069275.t1 | MTR_7g025160 | 26.415 | 212 | 139 | 5 | 8 | 211 | 18 | 220 | 6.98e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069275.t1 | AT1G52950 | 27.090 | 299 | 210 | 5 | 20 | 316 | 22 | 314 | 3.06e-24 | 106 |
| MS.gene069275.t1 | AT2G05642 | 22.823 | 333 | 195 | 6 | 5 | 316 | 5 | 296 | 2.85e-22 | 100 |
Find 114 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCACAACCTTCTCTTTA+AGG | 0.048956 | 3.3:+7998205 | None:intergenic |
| GCAGTCAATCTTTGTAAATT+TGG | 0.146508 | 3.3:+7998426 | None:intergenic |
| TGTGGGATCAATATGCTTTA+AGG | 0.205308 | 3.3:-7997514 | MS.gene069275:CDS |
| ACACCTAGGCACAGCATTTC+TGG | 0.281512 | 3.3:+7996828 | None:intergenic |
| GATGGATACCCGTCTGATTT+AGG | 0.289989 | 3.3:-7996488 | MS.gene069275:CDS |
| TGGAAAGAGATCTGCTGATT+TGG | 0.291847 | 3.3:-7995994 | MS.gene069275:CDS |
| CCTGTCTCTGCAATCGTTGC+TGG | 0.303425 | 3.3:-7998809 | MS.gene069275:CDS |
| ACCTTGCTACACGGAGTAAT+CGG | 0.310589 | 3.3:+7996020 | None:intergenic |
| TTATGAGATCGAAAATTTAC+TGG | 0.319596 | 3.3:-7998515 | MS.gene069275:CDS |
| CTTAATCCTTCCAGCACATT+TGG | 0.326173 | 3.3:+7996897 | None:intergenic |
| TCTACTAATGACCTAATCTT+AGG | 0.343156 | 3.3:+7998550 | None:intergenic |
| GAGCCTAAGTTTCGCTATAC+TGG | 0.359555 | 3.3:-7998481 | MS.gene069275:CDS |
| CAAGGTGTGAGTCAATCTTC+TGG | 0.370814 | 3.3:-7997210 | MS.gene069275:CDS |
| ATCTTTGTTGACATCAGTCT+TGG | 0.386824 | 3.3:+7996049 | None:intergenic |
| GGGATCACGCGTCGTCAAAT+AGG | 0.391818 | 3.3:+7997484 | None:intergenic |
| TGAATGGCAGTGATTTCGTT+AGG | 0.397115 | 3.3:+7998722 | None:intergenic |
| CTTCACAGCTGGAGAAATTA+CGG | 0.410476 | 3.3:-7996410 | MS.gene069275:CDS |
| GTACGATATTCTTTGACAAC+AGG | 0.410623 | 3.3:+7997350 | None:intergenic |
| TTCACACATTTCAGCTTGGC+AGG | 0.413396 | 3.3:+7995918 | None:intergenic |
| ATTAGGTCATTAGTAGAGGA+AGG | 0.416825 | 3.3:-7998544 | MS.gene069275:CDS |
| AGCGAAACTTAGGCTCACTA+TGG | 0.421346 | 3.3:+7998488 | None:intergenic |
| AGGCTTTGGTACCTAAGATT+AGG | 0.422023 | 3.3:-7998561 | MS.gene069275:CDS |
| GGAAGGATTAAGATCATTGC+TGG | 0.424745 | 3.3:-7996886 | MS.gene069275:CDS |
| TAGGTCATTAGTAGAGGAAG+GGG | 0.429543 | 3.3:-7998542 | MS.gene069275:CDS |
| CAATCTTTGTAAATTTGGTT+AGG | 0.434328 | 3.3:+7998431 | None:intergenic |
| TAGGCACAGCATTTCTGGTC+TGG | 0.437450 | 3.3:+7996833 | None:intergenic |
| TTTAAGGTTGAAATTACAAA+TGG | 0.440296 | 3.3:-7996440 | MS.gene069275:CDS |
| ACCAGTATATCTGTCCTCTT+TGG | 0.442298 | 3.3:+7998345 | None:intergenic |
| ATACGTCGGATGATTCAATA+AGG | 0.445508 | 3.3:+7997127 | None:intergenic |
| ACCAAAGAGGACAGATATAC+TGG | 0.454498 | 3.3:-7998346 | MS.gene069275:intron |
| AGGTTCAATATCACGACAAC+AGG | 0.459346 | 3.3:+7997455 | None:intergenic |
| TCTGATTTAGGTGTTCTGAT+TGG | 0.462512 | 3.3:-7996476 | MS.gene069275:CDS |
| TTGTTCTTGCCTCTATCTGT+GGG | 0.466251 | 3.3:-7996957 | MS.gene069275:CDS |
| TTTATGAATGCAGATGTCAT+AGG | 0.467964 | 3.3:-7998249 | MS.gene069275:intron |
| CGATTGCAGAGACAGGAGTT+AGG | 0.468013 | 3.3:+7998816 | None:intergenic |
| GGCCTCTGGGAAGAAGGCTT+TGG | 0.470210 | 3.3:-7998575 | MS.gene069275:CDS |
| TAGAGTACATTGTTCATTGT+GGG | 0.470491 | 3.3:-7997531 | MS.gene069275:CDS |
| TATCACGACAACAGGAGAGC+TGG | 0.471452 | 3.3:+7997463 | None:intergenic |
| AGATCGAAAAGGATGATTGA+TGG | 0.473069 | 3.3:-7995896 | None:intergenic |
| TGGCTCAATCCCACAGATAG+AGG | 0.476086 | 3.3:+7996948 | None:intergenic |
| TTCGCAGATGGGAAAGATAC+AGG | 0.476902 | 3.3:-7998596 | MS.gene069275:intron |
| ATGGGAAAGATACAGGCCTC+TGG | 0.481318 | 3.3:-7998589 | MS.gene069275:CDS |
| ATTGTTCTTGCCTCTATCTG+TGG | 0.482079 | 3.3:-7996958 | MS.gene069275:CDS |
| CCAGCAACGATTGCAGAGAC+AGG | 0.490864 | 3.3:+7998809 | None:intergenic |
| AGAAGATTGACTCACACCTT+GGG | 0.491372 | 3.3:+7997212 | None:intergenic |
| ACTCCGTGTAGCAAGGTGTC+TGG | 0.492172 | 3.3:-7996014 | MS.gene069275:CDS |
| TGCAGAGACAGGAGTTAGGA+TGG | 0.492399 | 3.3:+7998820 | None:intergenic |
| TTAGGTCATTAGTAGAGGAA+GGG | 0.498377 | 3.3:-7998543 | MS.gene069275:CDS |
| TTGGATGATTGTGATATTGT+CGG | 0.498738 | 3.3:-7995975 | MS.gene069275:CDS |
| GTGTGCGTGTCATCAACCTT+TGG | 0.499890 | 3.3:-7998766 | MS.gene069275:CDS |
| CTGTCTCTGCAATCGTTGCT+GGG | 0.508739 | 3.3:-7998808 | MS.gene069275:CDS |
| CAGAAGATTGACTCACACCT+TGG | 0.509657 | 3.3:+7997211 | None:intergenic |
| ATGGCAACTTGCTTCACAGC+TGG | 0.511146 | 3.3:-7996421 | MS.gene069275:CDS |
| GATACAGGCCTCTGGGAAGA+AGG | 0.511456 | 3.3:-7998581 | MS.gene069275:CDS |
| GCCACATCAGTTTGTGTCAA+AGG | 0.511908 | 3.3:+7996206 | None:intergenic |
| GAATGGCAGTGATTTCGTTA+GGG | 0.515576 | 3.3:+7998723 | None:intergenic |
| GTCAAGAAGCATCAAATGAA+TGG | 0.519079 | 3.3:+7998706 | None:intergenic |
| TCATAGTACCATCCGTACTC+TGG | 0.519345 | 3.3:+7996928 | None:intergenic |
| AACTGATGTGGCGCCGTTGG+AGG | 0.523440 | 3.3:-7996195 | MS.gene069275:intron |
| GATGCCTGCACCAAATGTGC+TGG | 0.525374 | 3.3:-7996907 | MS.gene069275:CDS |
| CCTTGCTACACGGAGTAATC+GGG | 0.528739 | 3.3:+7996021 | None:intergenic |
| CTTAAAGAGAAGGTTGTGAA+TGG | 0.530757 | 3.3:-7998204 | MS.gene069275:CDS |
| CCTTCCAGCACATTTGGTGC+AGG | 0.532458 | 3.3:+7996903 | None:intergenic |
| ACAAACTGATGTGGCGCCGT+TGG | 0.537558 | 3.3:-7996198 | MS.gene069275:CDS |
| GAATCAAGCACCTCTCTGAA+AGG | 0.538625 | 3.3:+7998370 | None:intergenic |
| CAAAGTCATTGACCTTACCT+TGG | 0.541837 | 3.3:-7998172 | MS.gene069275:CDS |
| TTATTTGGTTCAGAATGTAC+AGG | 0.542109 | 3.3:-7996099 | MS.gene069275:intron |
| TGTCCAGTATAGCGAAACTT+AGG | 0.543021 | 3.3:+7998478 | None:intergenic |
| AATCAAGCACCTCTCTGAAA+GGG | 0.543284 | 3.3:+7998371 | None:intergenic |
| ATCACGACAACAGGAGAGCT+GGG | 0.547563 | 3.3:+7997464 | None:intergenic |
| TTTGATAAGATCAGCGTCAT+CGG | 0.548924 | 3.3:+7996373 | None:intergenic |
| CACTTACTCACTGTCTTCCA+AGG | 0.553305 | 3.3:+7998155 | None:intergenic |
| AACTAAGATGCTACCTCCAA+CGG | 0.553721 | 3.3:+7996182 | None:intergenic |
| CTGCATCATATCATCTGCAA+GGG | 0.558463 | 3.3:+7997173 | None:intergenic |
| ATGTAGGGTGGCAGTTCCGA+TGG | 0.559452 | 3.3:-7996506 | MS.gene069275:intron |
| AAGAGATGTCCTTAAAGAGA+AGG | 0.560400 | 3.3:-7998214 | MS.gene069275:CDS |
| TGTGGGATTGAGCCAGAGTA+CGG | 0.560659 | 3.3:-7996940 | MS.gene069275:CDS |
| AGTTTCGCTATACTGGACAT+AGG | 0.566846 | 3.3:-7998474 | MS.gene069275:CDS |
| TGGGAAAGATACAGGCCTCT+GGG | 0.567444 | 3.3:-7998588 | MS.gene069275:CDS |
| TAAGATTAGGTCATTAGTAG+AGG | 0.575794 | 3.3:-7998548 | MS.gene069275:CDS |
| ATAGAGTACATTGTTCATTG+TGG | 0.579525 | 3.3:-7997532 | MS.gene069275:CDS |
| CCCGATTACTCCGTGTAGCA+AGG | 0.584861 | 3.3:-7996021 | MS.gene069275:CDS |
| TCTGCATCATATCATCTGCA+AGG | 0.586898 | 3.3:+7997172 | None:intergenic |
| GCGAAACTTAGGCTCACTAT+GGG | 0.587671 | 3.3:+7998489 | None:intergenic |
| GCAAGAACAATTACGTTACA+TGG | 0.589574 | 3.3:+7996970 | None:intergenic |
| AGGTCATTAGTAGAGGAAGG+GGG | 0.589927 | 3.3:-7998541 | MS.gene069275:CDS |
| ATCAGAACACCTAAATCAGA+CGG | 0.591320 | 3.3:+7996479 | None:intergenic |
| AGACCAGAAATGCTGTGCCT+AGG | 0.592686 | 3.3:-7996831 | MS.gene069275:intron |
| ACTCACTGTCTTCCAAGGTA+AGG | 0.595174 | 3.3:+7998160 | None:intergenic |
| GATCTTCACACATTTCAGCT+TGG | 0.600610 | 3.3:+7995914 | None:intergenic |
| TTTCCAGACACCTTGCTACA+CGG | 0.601622 | 3.3:+7996011 | None:intergenic |
| CAGGTACAATTGCTTGAGGA+AGG | 0.604139 | 3.3:-7996080 | MS.gene069275:CDS |
| GGATTAAGATCATTGCTGGA+AGG | 0.608494 | 3.3:-7996882 | MS.gene069275:CDS |
| CATTAAGCGTCATGACCTGA+AGG | 0.612415 | 3.3:-7996345 | MS.gene069275:intron |
| TTTGATGCTTCTTGACGACA+AGG | 0.614719 | 3.3:-7998699 | MS.gene069275:intron |
| TGAATTCAGAAACAGTCCAA+AGG | 0.615639 | 3.3:+7998750 | None:intergenic |
| GGATCAATATGCTTTAAGGA+TGG | 0.617864 | 3.3:-7997510 | MS.gene069275:CDS |
| TAAATCAGACGGGTATCCAT+CGG | 0.618979 | 3.3:+7996490 | None:intergenic |
| GCTCTAATGATGATGGTGAA+AGG | 0.620732 | 3.3:-7995953 | MS.gene069275:CDS |
| GTCTGGTTGCACCTTGACGA+AGG | 0.621468 | 3.3:+7996850 | None:intergenic |
| GGACATCTCTTTCAACCACA+TGG | 0.625592 | 3.3:+7998226 | None:intergenic |
| TCAGAACACCTAAATCAGAC+GGG | 0.626393 | 3.3:+7996480 | None:intergenic |
| GGATTGAGCCAGAGTACGGA+TGG | 0.635845 | 3.3:-7996936 | MS.gene069275:CDS |
| GCAGAAATTTCAGTCACCCA+AGG | 0.642758 | 3.3:-7997228 | MS.gene069275:CDS |
| ATTGTCGGCTCTAATGATGA+TGG | 0.644857 | 3.3:-7995960 | MS.gene069275:CDS |
| TGTACAGGTACAATTGCTTG+AGG | 0.649475 | 3.3:-7996084 | MS.gene069275:CDS |
| TCCTTTGACACAAACTGATG+TGG | 0.655852 | 3.3:-7996207 | MS.gene069275:CDS |
| GGTGCTTGATTCGACCAAAG+AGG | 0.656836 | 3.3:-7998359 | MS.gene069275:CDS |
| CCTGCACCAAATGTGCTGGA+AGG | 0.670265 | 3.3:-7996903 | MS.gene069275:CDS |
| TGCATCATATCATCTGCAAG+GGG | 0.681617 | 3.3:+7997174 | None:intergenic |
| GAAATGTGTGAAGATCGAAA+AGG | 0.682154 | 3.3:-7995907 | MS.gene069275:CDS |
| TGATTTCATCCCTTTCAGAG+AGG | 0.689269 | 3.3:-7998380 | MS.gene069275:CDS |
| TACCAAAGCCTTCTTCCCAG+AGG | 0.696777 | 3.3:+7998573 | None:intergenic |
| TGCAGATGTCATAGGCCATG+TGG | 0.736755 | 3.3:-7998241 | MS.gene069275:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTACATATAATAAGTTTT+GGG | - | chr3.3:7996785-7996804 | MS.gene069275:intron | 10.0% |
| !! | AAATTGCATATTAAATGAAT+TGG | + | chr3.3:7997070-7997089 | None:intergenic | 15.0% |
| !! | ATGGACATTATATAAATAAA+AGG | - | chr3.3:7997404-7997423 | MS.gene069275:CDS | 15.0% |
| !! | TAGAATAAATTAACAATATG+AGG | + | chr3.3:7996829-7996848 | None:intergenic | 15.0% |
| !! | TATGAACAAAAAAGAAAATA+AGG | + | chr3.3:7997655-7997674 | None:intergenic | 15.0% |
| !! | TTTGTTCCAAAAAATATATT+GGG | - | chr3.3:7997038-7997057 | MS.gene069275:intron | 15.0% |
| !!! | AAAATCTGATATACATATTT+TGG | + | chr3.3:7997021-7997040 | None:intergenic | 15.0% |
| !!! | AATTTTTTTTTCAATAACAG+TGG | - | chr3.3:7997085-7997104 | MS.gene069275:intron | 15.0% |
| !!! | ATTTTCTTTTTTGTTCATAA+TGG | - | chr3.3:7997656-7997675 | MS.gene069275:intron | 15.0% |
| !!! | GTTTTACATATAATAAGTTT+TGG | - | chr3.3:7996784-7996803 | MS.gene069275:intron | 15.0% |
| !!! | TTTACATATAATAAGTTTTG+GGG | - | chr3.3:7996786-7996805 | MS.gene069275:intron | 15.0% |
| !!! | TTTTGTTCCAAAAAATATAT+TGG | - | chr3.3:7997037-7997056 | MS.gene069275:intron | 15.0% |
| !!! | TTTTGTTTAGAAACTATTAT+TGG | - | chr3.3:7997429-7997448 | MS.gene069275:CDS | 15.0% |
| !! | AAAAAAAAATCATCATACGT+CGG | + | chr3.3:7997616-7997635 | None:intergenic | 20.0% |
| !! | AAAACAATAAGAACAAACAA+TGG | + | chr3.3:7996699-7996718 | None:intergenic | 20.0% |
| !! | AACTTGACTATGATAAAAAT+TGG | + | chr3.3:7997963-7997982 | None:intergenic | 20.0% |
| !! | AATTAAATAAAAGAACAGCA+TGG | + | chr3.3:7996662-7996681 | None:intergenic | 20.0% |
| !! | ATAACCAACCATTAAAATTA+AGG | + | chr3.3:7997155-7997174 | None:intergenic | 20.0% |
| !! | TGCAAACTAAAAAAATACTA+TGG | - | chr3.3:7997295-7997314 | MS.gene069275:intron | 20.0% |
| !!! | AAACAACCCAATATATTTTT+TGG | + | chr3.3:7997047-7997066 | None:intergenic | 20.0% |
| !!! | ACGTATGATGATTTTTTTTT+TGG | - | chr3.3:7997616-7997635 | MS.gene069275:intron | 20.0% |
| !!! | AGTATTTTTTTAGTTTGCAA+AGG | + | chr3.3:7997294-7997313 | None:intergenic | 20.0% |
| !!! | ATTTTTTTTTTGGTCATCAT+TGG | - | chr3.3:7997626-7997645 | MS.gene069275:intron | 20.0% |
| !!! | CGCATAAGAATTATTTTATT+TGG | - | chr3.3:7998612-7998631 | MS.gene069275:intron | 20.0% |
| !!! | GATATTATTGTTTTAATCGT+AGG | - | chr3.3:7997466-7997485 | MS.gene069275:CDS | 20.0% |
| !!! | GATCTTTACCTTAATTTTAA+TGG | - | chr3.3:7997144-7997163 | MS.gene069275:CDS | 20.0% |
| !!! | TGGAAAAAAAATGCTTTTTA+AGG | - | chr3.3:7998270-7998289 | MS.gene069275:intron | 20.0% |
| !!! | TTCTTTGATTAATTGACTTT+TGG | - | chr3.3:7996908-7996927 | MS.gene069275:CDS | 20.0% |
| !!! | TTTAAGGTTGAAATTACAAA+TGG | - | chr3.3:7998286-7998305 | MS.gene069275:intron | 20.0% |
| !!! | TTTACCTTAATTTTAATGGT+TGG | - | chr3.3:7997148-7997167 | MS.gene069275:CDS | 20.0% |
| ! | AAAGAATATCGTACTAAGTA+TGG | - | chr3.3:7997385-7997404 | MS.gene069275:CDS | 25.0% |
| ! | ATATGATGTATCTAATTGCT+TGG | - | chr3.3:7996741-7996760 | MS.gene069275:intron | 25.0% |
| ! | CAATCTTTGTAAATTTGGTT+AGG | + | chr3.3:7996298-7996317 | None:intergenic | 25.0% |
| ! | CTATATTATAATTCGCAGAT+GGG | - | chr3.3:7996119-7996138 | MS.gene069275:intron | 25.0% |
| ! | CTTATTTCCTTCTAAGTATA+AGG | - | chr3.3:7996065-7996084 | MS.gene069275:CDS | 25.0% |
| ! | TATCAATCCTTATACTTAGA+AGG | + | chr3.3:7996075-7996094 | None:intergenic | 25.0% |
| ! | TTATGAGATCGAAAATTTAC+TGG | - | chr3.3:7996211-7996230 | MS.gene069275:CDS | 25.0% |
| !! | AAAAAAATACTATGGTGCTA+TGG | - | chr3.3:7997303-7997322 | MS.gene069275:intron | 25.0% |
| !! | AATATGTTTGAAATGTGATG+AGG | - | chr3.3:7996958-7996977 | MS.gene069275:CDS | 25.0% |
| !!! | AAAAAATACTATGGTGCTAT+GGG | - | chr3.3:7997304-7997323 | MS.gene069275:intron | 25.0% |
| !!! | ATTTTGGACCTAAGTTTTAA+AGG | + | chr3.3:7997005-7997024 | None:intergenic | 25.0% |
| ATAGAGTACATTGTTCATTG+TGG | - | chr3.3:7997194-7997213 | MS.gene069275:CDS | 30.0% | |
| ATTGTAAACAGAAACACGTA+CGG | + | chr3.3:7998429-7998448 | None:intergenic | 30.0% | |
| CTTACAAGTGCTTATATTAG+TGG | - | chr3.3:7996630-7996649 | MS.gene069275:intron | 30.0% | |
| GACATTGCCTTAATAATGTA+GGG | - | chr3.3:7998205-7998224 | MS.gene069275:CDS | 30.0% | |
| GCAGTCAATCTTTGTAAATT+TGG | + | chr3.3:7996303-7996322 | None:intergenic | 30.0% | |
| GCTATATTATAATTCGCAGA+TGG | - | chr3.3:7996118-7996137 | MS.gene069275:intron | 30.0% | |
| TAAGATTAGGTCATTAGTAG+AGG | - | chr3.3:7996178-7996197 | MS.gene069275:intron | 30.0% | |
| TAGAGTACATTGTTCATTGT+GGG | - | chr3.3:7997195-7997214 | MS.gene069275:CDS | 30.0% | |
| TCTACTAATGACCTAATCTT+AGG | + | chr3.3:7996179-7996198 | None:intergenic | 30.0% | |
| TGACATTGCCTTAATAATGT+AGG | - | chr3.3:7998204-7998223 | MS.gene069275:CDS | 30.0% | |
| TTACATGTATAGTTTCTTCC+TGG | - | chr3.3:7997981-7998000 | MS.gene069275:intron | 30.0% | |
| TTGGATGATTGTGATATTGT+CGG | - | chr3.3:7998751-7998770 | MS.gene069275:CDS | 30.0% | |
| TTTATGAATGCAGATGTCAT+AGG | - | chr3.3:7996477-7996496 | MS.gene069275:CDS | 30.0% | |
| ! | GGTTATATGCATTTTTACAG+TGG | - | chr3.3:7997169-7997188 | MS.gene069275:CDS | 30.0% |
| ! | TTATTTGGTTCAGAATGTAC+AGG | - | chr3.3:7998627-7998646 | MS.gene069275:intron | 30.0% |
| !! | TTGGGTAACCTTTAAAACTT+AGG | - | chr3.3:7996994-7997013 | MS.gene069275:intron | 30.0% |
| !!! | ATCTCAGATTTTTGATGATG+AGG | - | chr3.3:7998489-7998508 | MS.gene069275:CDS | 30.0% |
| !!! | GGAATCTCAAATGCTTTTTT+TGG | - | chr3.3:7997325-7997344 | MS.gene069275:intron | 30.0% |
| !!! | TGTTTTAATCGTAGGATTGA+CGG | - | chr3.3:7997474-7997493 | MS.gene069275:CDS | 30.0% |
| AAAGGTTACCCAAAATCAAG+TGG | + | chr3.3:7996987-7997006 | None:intergenic | 35.0% | |
| AAGAGATGTCCTTAAAGAGA+AGG | - | chr3.3:7996512-7996531 | MS.gene069275:intron | 35.0% | |
| AAGATCTGATTGATGCTCAA+GGG | - | chr3.3:7998108-7998127 | MS.gene069275:intron | 35.0% | |
| AAGTGAACACGAAGATTTGA+AGG | + | chr3.3:7996607-7996626 | None:intergenic | 35.0% | |
| ACAAGTGCTTATATTAGTGG+TGG | - | chr3.3:7996633-7996652 | MS.gene069275:intron | 35.0% | |
| ACATCTGCATTCATAAACAG+TGG | + | chr3.3:7996474-7996493 | None:intergenic | 35.0% | |
| ATACGTCGGATGATTCAATA+AGG | + | chr3.3:7997602-7997621 | None:intergenic | 35.0% | |
| ATCAGAACACCTAAATCAGA+CGG | + | chr3.3:7998250-7998269 | None:intergenic | 35.0% | |
| ATCTTTGTTGACATCAGTCT+TGG | + | chr3.3:7998680-7998699 | None:intergenic | 35.0% | |
| ATTAGGTCATTAGTAGAGGA+AGG | - | chr3.3:7996182-7996201 | MS.gene069275:intron | 35.0% | |
| ATTGCCTTAATAATGTAGGG+TGG | - | chr3.3:7998208-7998227 | MS.gene069275:CDS | 35.0% | |
| CATTCACAACCTTCTCTTTA+AGG | + | chr3.3:7996524-7996543 | None:intergenic | 35.0% | |
| CATTGAGGTGATTCACAAAA+CGG | + | chr3.3:7998157-7998176 | None:intergenic | 35.0% | |
| CGCAATACAAAGGATTAGAT+TGG | + | chr3.3:7998182-7998201 | None:intergenic | 35.0% | |
| CGCAATGTTTCAAACTATGT+GGG | - | chr3.3:7998074-7998093 | MS.gene069275:intron | 35.0% | |
| CTTAAAGAGAAGGTTGTGAA+TGG | - | chr3.3:7996522-7996541 | MS.gene069275:intron | 35.0% | |
| GAAATGTGTGAAGATCGAAA+AGG | - | chr3.3:7998819-7998838 | MS.gene069275:CDS | 35.0% | |
| GAGACAATACAATCAGACTA+AGG | + | chr3.3:7997717-7997736 | None:intergenic | 35.0% | |
| GCAAGAACAATTACGTTACA+TGG | + | chr3.3:7997759-7997778 | None:intergenic | 35.0% | |
| GTACAAGTTATGGACAATAC+TGG | - | chr3.3:7998026-7998045 | MS.gene069275:intron | 35.0% | |
| GTACGATATTCTTTGACAAC+AGG | + | chr3.3:7997379-7997398 | None:intergenic | 35.0% | |
| TCGCAATGTTTCAAACTATG+TGG | - | chr3.3:7998073-7998092 | MS.gene069275:intron | 35.0% | |
| TCTGATTTAGGTGTTCTGAT+TGG | - | chr3.3:7998250-7998269 | MS.gene069275:intron | 35.0% | |
| TGAATTCAGAAACAGTCCAA+AGG | + | chr3.3:7995979-7995998 | None:intergenic | 35.0% | |
| TGTGGGATCAATATGCTTTA+AGG | - | chr3.3:7997212-7997231 | MS.gene069275:CDS | 35.0% | |
| TTAGGTCATTAGTAGAGGAA+GGG | - | chr3.3:7996183-7996202 | MS.gene069275:intron | 35.0% | |
| TTGGGGAATGTAAAGTGATT+GGG | - | chr3.3:7996803-7996822 | MS.gene069275:intron | 35.0% | |
| TTTGATAAGATCAGCGTCAT+CGG | + | chr3.3:7998356-7998375 | None:intergenic | 35.0% | |
| TTTGGGGAATGTAAAGTGAT+TGG | - | chr3.3:7996802-7996821 | MS.gene069275:intron | 35.0% | |
| !! | GGATCAATATGCTTTAAGGA+TGG | - | chr3.3:7997216-7997235 | MS.gene069275:CDS | 35.0% |
| !! | GTCAAGAAGCATCAAATGAA+TGG | + | chr3.3:7996023-7996042 | None:intergenic | 35.0% |
| AAAGAGGACAGATATACTGG+TGG | - | chr3.3:7996383-7996402 | MS.gene069275:CDS | 40.0% | |
| AACTAAGATGCTACCTCCAA+CGG | + | chr3.3:7998547-7998566 | None:intergenic | 40.0% | |
| AAGAGGACAGATATACTGGT+GGG | - | chr3.3:7996384-7996403 | MS.gene069275:CDS | 40.0% | |
| ACCAAAGAGGACAGATATAC+TGG | - | chr3.3:7996380-7996399 | MS.gene069275:CDS | 40.0% | |
| ACCAGTATATCTGTCCTCTT+TGG | + | chr3.3:7996384-7996403 | None:intergenic | 40.0% | |
| ACCTTGAATCTGTTCAAACC+AGG | + | chr3.3:7998002-7998021 | None:intergenic | 40.0% | |
| ACTGCCACCCTACATTATTA+AGG | + | chr3.3:7998215-7998234 | None:intergenic | 40.0% | |
| AGGTTCAATATCACGACAAC+AGG | + | chr3.3:7997274-7997293 | None:intergenic | 40.0% | |
| AGTTTCGCTATACTGGACAT+AGG | - | chr3.3:7996252-7996271 | MS.gene069275:intron | 40.0% | |
| ATGGCTGCACACACATAATA+AGG | + | chr3.3:7997740-7997759 | None:intergenic | 40.0% | |
| ATTGTTCTTGCCTCTATCTG+TGG | - | chr3.3:7997768-7997787 | MS.gene069275:intron | 40.0% | |
| CAAAGTCATTGACCTTACCT+TGG | - | chr3.3:7996554-7996573 | MS.gene069275:intron | 40.0% | |
| CAAGATCTGATTGATGCTCA+AGG | - | chr3.3:7998107-7998126 | MS.gene069275:intron | 40.0% | |
| CAAGGTGCATGTACAAGTTA+TGG | - | chr3.3:7998016-7998035 | MS.gene069275:intron | 40.0% | |
| CAATGTCAGTCGCAATACAA+AGG | + | chr3.3:7998192-7998211 | None:intergenic | 40.0% | |
| CTGCATCATATCATCTGCAA+GGG | + | chr3.3:7997556-7997575 | None:intergenic | 40.0% | |
| CTTAATCCTTCCAGCACATT+TGG | + | chr3.3:7997832-7997851 | None:intergenic | 40.0% | |
| CTTCACAGCTGGAGAAATTA+CGG | - | chr3.3:7998316-7998335 | MS.gene069275:intron | 40.0% | |
| GAATGGCAGTGATTTCGTTA+GGG | + | chr3.3:7996006-7996025 | None:intergenic | 40.0% | |
| GATCTTCACACATTTCAGCT+TGG | + | chr3.3:7998815-7998834 | None:intergenic | 40.0% | |
| GGAAGGATTAAGATCATTGC+TGG | - | chr3.3:7997840-7997859 | MS.gene069275:intron | 40.0% | |
| GGATTAAGATCATTGCTGGA+AGG | - | chr3.3:7997844-7997863 | MS.gene069275:intron | 40.0% | |
| TAAATCAGACGGGTATCCAT+CGG | + | chr3.3:7998239-7998258 | None:intergenic | 40.0% | |
| TAGGTCATTAGTAGAGGAAG+GGG | - | chr3.3:7996184-7996203 | MS.gene069275:intron | 40.0% | |
| TCAGAACACCTAAATCAGAC+GGG | + | chr3.3:7998249-7998268 | None:intergenic | 40.0% | |
| TCCTTTGACACAAACTGATG+TGG | - | chr3.3:7998519-7998538 | MS.gene069275:CDS | 40.0% | |
| TCTGCATCATATCATCTGCA+AGG | + | chr3.3:7997557-7997576 | None:intergenic | 40.0% | |
| TGAATGGCAGTGATTTCGTT+AGG | + | chr3.3:7996007-7996026 | None:intergenic | 40.0% | |
| TGATTTCATCCCTTTCAGAG+AGG | - | chr3.3:7996346-7996365 | MS.gene069275:CDS | 40.0% | |
| TGCATCATATCATCTGCAAG+GGG | + | chr3.3:7997555-7997574 | None:intergenic | 40.0% | |
| TGGCTGCACACACATAATAA+GGG | + | chr3.3:7997739-7997758 | None:intergenic | 40.0% | |
| TGTACAGGTACAATTGCTTG+AGG | - | chr3.3:7998642-7998661 | MS.gene069275:intron | 40.0% | |
| TGTCCAGTATAGCGAAACTT+AGG | + | chr3.3:7996251-7996270 | None:intergenic | 40.0% | |
| TGTTGTTAGCAAACACACCT+AGG | + | chr3.3:7997915-7997934 | None:intergenic | 40.0% | |
| TTGTTCTTGCCTCTATCTGT+GGG | - | chr3.3:7997769-7997788 | MS.gene069275:intron | 40.0% | |
| TTTGATGCTTCTTGACGACA+AGG | - | chr3.3:7996027-7996046 | MS.gene069275:CDS | 40.0% | |
| ! | AATCAAGCACCTCTCTGAAA+GGG | + | chr3.3:7996358-7996377 | None:intergenic | 40.0% |
| ! | AGAAGATTGACTCACACCTT+GGG | + | chr3.3:7997517-7997536 | None:intergenic | 40.0% |
| ! | AGGCTTTGGTACCTAAGATT+AGG | - | chr3.3:7996165-7996184 | MS.gene069275:intron | 40.0% |
| ! | TCCTGGTTTGAACAGATTCA+AGG | - | chr3.3:7997998-7998017 | MS.gene069275:intron | 40.0% |
| ! | TGGAAAGAGATCTGCTGATT+TGG | - | chr3.3:7998732-7998751 | MS.gene069275:CDS | 40.0% |
| !! | AGGATTAGATTGGAGCATTG+AGG | + | chr3.3:7998172-7998191 | None:intergenic | 40.0% |
| !! | ATGAGGTTGCCACTTGATTT+TGG | - | chr3.3:7996975-7996994 | MS.gene069275:intron | 40.0% |
| !! | ATTGTCGGCTCTAATGATGA+TGG | - | chr3.3:7998766-7998785 | MS.gene069275:CDS | 40.0% |
| !! | GCTCTAATGATGATGGTGAA+AGG | - | chr3.3:7998773-7998792 | MS.gene069275:CDS | 40.0% |
| !! | TGAGGTTGCCACTTGATTTT+GGG | - | chr3.3:7996976-7996995 | MS.gene069275:intron | 40.0% |
| ACCTTGCTACACGGAGTAAT+CGG | + | chr3.3:7998709-7998728 | None:intergenic | 45.0% | |
| ACTCACTGTCTTCCAAGGTA+AGG | + | chr3.3:7996569-7996588 | None:intergenic | 45.0% | |
| AGCGAAACTTAGGCTCACTA+TGG | + | chr3.3:7996241-7996260 | None:intergenic | 45.0% | |
| AGGTCATTAGTAGAGGAAGG+GGG | - | chr3.3:7996185-7996204 | MS.gene069275:intron | 45.0% | |
| CAAGGTGTGAGTCAATCTTC+TGG | - | chr3.3:7997516-7997535 | MS.gene069275:CDS | 45.0% | |
| CACAAAACGGTTACAGCACT+TGG | + | chr3.3:7998144-7998163 | None:intergenic | 45.0% | |
| CACTTACTCACTGTCTTCCA+AGG | + | chr3.3:7996574-7996593 | None:intergenic | 45.0% | |
| CAGGTACAATTGCTTGAGGA+AGG | - | chr3.3:7998646-7998665 | MS.gene069275:intron | 45.0% | |
| CATTAAGCGTCATGACCTGA+AGG | - | chr3.3:7998381-7998400 | MS.gene069275:CDS | 45.0% | |
| GAATCAAGCACCTCTCTGAA+AGG | + | chr3.3:7996359-7996378 | None:intergenic | 45.0% | |
| GAGCCTAAGTTTCGCTATAC+TGG | - | chr3.3:7996245-7996264 | MS.gene069275:intron | 45.0% | |
| GATGGATACCCGTCTGATTT+AGG | - | chr3.3:7998238-7998257 | MS.gene069275:CDS | 45.0% | |
| GCAGAAATTTCAGTCACCCA+AGG | - | chr3.3:7997498-7997517 | MS.gene069275:CDS | 45.0% | |
| GCCACATCAGTTTGTGTCAA+AGG | + | chr3.3:7998523-7998542 | None:intergenic | 45.0% | |
| GCGAAACTTAGGCTCACTAT+GGG | + | chr3.3:7996240-7996259 | None:intergenic | 45.0% | |
| GGACATCTCTTTCAACCACA+TGG | + | chr3.3:7996503-7996522 | None:intergenic | 45.0% | |
| TCATAGTACCATCCGTACTC+TGG | + | chr3.3:7997801-7997820 | None:intergenic | 45.0% | |
| TTCACACATTTCAGCTTGGC+AGG | + | chr3.3:7998811-7998830 | None:intergenic | 45.0% | |
| TTCGCAGATGGGAAAGATAC+AGG | - | chr3.3:7996130-7996149 | MS.gene069275:intron | 45.0% | |
| TTTCCAGACACCTTGCTACA+CGG | + | chr3.3:7998718-7998737 | None:intergenic | 45.0% | |
| ! | CAGAAGATTGACTCACACCT+TGG | + | chr3.3:7997518-7997537 | None:intergenic | 45.0% |
| ! | GGATTTTCTGTCCTTCGTCA+AGG | - | chr3.3:7997865-7997884 | MS.gene069275:intron | 45.0% |
| ACACCTAGGCACAGCATTTC+TGG | + | chr3.3:7997901-7997920 | None:intergenic | 50.0% | |
| AGACCAGAAATGCTGTGCCT+AGG | - | chr3.3:7997895-7997914 | MS.gene069275:intron | 50.0% | |
| ATCACGACAACAGGAGAGCT+GGG | + | chr3.3:7997265-7997284 | None:intergenic | 50.0% | |
| ATGGGAAAGATACAGGCCTC+TGG | - | chr3.3:7996137-7996156 | MS.gene069275:intron | 50.0% | |
| CCTTGCTACACGGAGTAATC+GGG | + | chr3.3:7998708-7998727 | None:intergenic | 50.0% | |
| CGATTGCAGAGACAGGAGTT+AGG | + | chr3.3:7995913-7995932 | None:intergenic | 50.0% | |
| CTGTCTCTGCAATCGTTGCT+GGG | - | chr3.3:7995918-7995937 | MS.gene069275:CDS | 50.0% | |
| GTGTGCGTGTCATCAACCTT+TGG | - | chr3.3:7995960-7995979 | MS.gene069275:CDS | 50.0% | |
| TACCAAAGCCTTCTTCCCAG+AGG | + | chr3.3:7996156-7996175 | None:intergenic | 50.0% | |
| TATCACGACAACAGGAGAGC+TGG | + | chr3.3:7997266-7997285 | None:intergenic | 50.0% | |
| TCTGATTGATGCTCAAGGGC+AGG | - | chr3.3:7998112-7998131 | MS.gene069275:intron | 50.0% | |
| TGCAGAGACAGGAGTTAGGA+TGG | + | chr3.3:7995909-7995928 | None:intergenic | 50.0% | |
| TGCAGATGTCATAGGCCATG+TGG | - | chr3.3:7996485-7996504 | MS.gene069275:CDS | 50.0% | |
| TGGCTCAATCCCACAGATAG+AGG | + | chr3.3:7997781-7997800 | None:intergenic | 50.0% | |
| TGGGAAAGATACAGGCCTCT+GGG | - | chr3.3:7996138-7996157 | MS.gene069275:intron | 50.0% | |
| TGTGGGATTGAGCCAGAGTA+CGG | - | chr3.3:7997786-7997805 | MS.gene069275:intron | 50.0% | |
| ! | ATGGCAACTTGCTTCACAGC+TGG | - | chr3.3:7998305-7998324 | MS.gene069275:intron | 50.0% |
| ! | GGTGCTTGATTCGACCAAAG+AGG | - | chr3.3:7996367-7996386 | MS.gene069275:CDS | 50.0% |
| !! | TAGGCACAGCATTTCTGGTC+TGG | + | chr3.3:7997896-7997915 | None:intergenic | 50.0% |
| ACAAACTGATGTGGCGCCGT+TGG | - | chr3.3:7998528-7998547 | MS.gene069275:CDS | 55.0% | |
| ATGTAGGGTGGCAGTTCCGA+TGG | - | chr3.3:7998220-7998239 | MS.gene069275:CDS | 55.0% | |
| CACGATCAGCACTCACCTTC+AGG | + | chr3.3:7998399-7998418 | None:intergenic | 55.0% | |
| CCAGCAACGATTGCAGAGAC+AGG | + | chr3.3:7995920-7995939 | None:intergenic | 55.0% | |
| CCCGATTACTCCGTGTAGCA+AGG | - | chr3.3:7998705-7998724 | MS.gene069275:CDS | 55.0% | |
| CCTGCACCAAATGTGCTGGA+AGG | - | chr3.3:7997823-7997842 | MS.gene069275:intron | 55.0% | |
| CCTGTCTCTGCAATCGTTGC+TGG | - | chr3.3:7995917-7995936 | MS.gene069275:CDS | 55.0% | |
| GATGCCTGCACCAAATGTGC+TGG | - | chr3.3:7997819-7997838 | MS.gene069275:intron | 55.0% | |
| GGATTGAGCCAGAGTACGGA+TGG | - | chr3.3:7997790-7997809 | MS.gene069275:intron | 55.0% | |
| GGGATCACGCGTCGTCAAAT+AGG | + | chr3.3:7997245-7997264 | None:intergenic | 55.0% | |
| GTCTGGTTGCACCTTGACGA+AGG | + | chr3.3:7997879-7997898 | None:intergenic | 55.0% | |
| ! | ACTCCGTGTAGCAAGGTGTC+TGG | - | chr3.3:7998712-7998731 | MS.gene069275:CDS | 55.0% |
| ! | GATACAGGCCTCTGGGAAGA+AGG | - | chr3.3:7996145-7996164 | MS.gene069275:intron | 55.0% |
| !! | CCTTCCAGCACATTTGGTGC+AGG | + | chr3.3:7997826-7997845 | None:intergenic | 55.0% |
| AACTGATGTGGCGCCGTTGG+AGG | - | chr3.3:7998531-7998550 | MS.gene069275:CDS | 60.0% | |
| ! | GGCCTCTGGGAAGAAGGCTT+TGG | - | chr3.3:7996151-7996170 | MS.gene069275:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 7995899 | 7998849 | 7995899 | ID=MS.gene069275 |
| chr3.3 | mRNA | 7995899 | 7998849 | 7995899 | ID=MS.gene069275.t1;Parent=MS.gene069275 |
| chr3.3 | exon | 7998700 | 7998849 | 7998700 | ID=MS.gene069275.t1.exon1;Parent=MS.gene069275.t1 |
| chr3.3 | CDS | 7998700 | 7998849 | 7998700 | ID=cds.MS.gene069275.t1;Parent=MS.gene069275.t1 |
| chr3.3 | exon | 7998347 | 7998611 | 7998347 | ID=MS.gene069275.t1.exon2;Parent=MS.gene069275.t1 |
| chr3.3 | CDS | 7998347 | 7998611 | 7998347 | ID=cds.MS.gene069275.t1;Parent=MS.gene069275.t1 |
| chr3.3 | exon | 7998162 | 7998258 | 7998162 | ID=MS.gene069275.t1.exon3;Parent=MS.gene069275.t1 |
| chr3.3 | CDS | 7998162 | 7998258 | 7998162 | ID=cds.MS.gene069275.t1;Parent=MS.gene069275.t1 |
| chr3.3 | exon | 7997347 | 7997559 | 7997347 | ID=MS.gene069275.t1.exon4;Parent=MS.gene069275.t1 |
| chr3.3 | CDS | 7997347 | 7997559 | 7997347 | ID=cds.MS.gene069275.t1;Parent=MS.gene069275.t1 |
| chr3.3 | exon | 7997131 | 7997260 | 7997131 | ID=MS.gene069275.t1.exon5;Parent=MS.gene069275.t1 |
| chr3.3 | CDS | 7997131 | 7997260 | 7997131 | ID=cds.MS.gene069275.t1;Parent=MS.gene069275.t1 |
| chr3.3 | exon | 7996832 | 7996992 | 7996832 | ID=MS.gene069275.t1.exon6;Parent=MS.gene069275.t1 |
| chr3.3 | CDS | 7996832 | 7996992 | 7996832 | ID=cds.MS.gene069275.t1;Parent=MS.gene069275.t1 |
| chr3.3 | exon | 7996346 | 7996514 | 7996346 | ID=MS.gene069275.t1.exon7;Parent=MS.gene069275.t1 |
| chr3.3 | CDS | 7996346 | 7996514 | 7996346 | ID=cds.MS.gene069275.t1;Parent=MS.gene069275.t1 |
| chr3.3 | exon | 7996196 | 7996252 | 7996196 | ID=MS.gene069275.t1.exon8;Parent=MS.gene069275.t1 |
| chr3.3 | CDS | 7996196 | 7996252 | 7996196 | ID=cds.MS.gene069275.t1;Parent=MS.gene069275.t1 |
| chr3.3 | exon | 7995899 | 7996108 | 7995899 | ID=MS.gene069275.t1.exon9;Parent=MS.gene069275.t1 |
| chr3.3 | CDS | 7995899 | 7996108 | 7995899 | ID=cds.MS.gene069275.t1;Parent=MS.gene069275.t1 |
| Gene Sequence |
| Protein sequence |
