Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069330.t1 | RHN66888.1 | 88.4 | 277 | 27 | 1 | 1 | 277 | 59 | 330 | 6.90E-72 | 280.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069330.t1 | Q9S728 | 67.0 | 115 | 34 | 1 | 166 | 276 | 191 | 305 | 1.2e-40 | 168.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069330.t1 | G7ZWV1 | 88.4 | 277 | 27 | 1 | 1 | 277 | 1 | 272 | 5.0e-72 | 280.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050020 | MS.gene069330 | 0.83926 | 1.76E-57 | -1.69E-46 |
| MS.gene050298 | MS.gene069330 | 0.850896 | 1.26E-60 | -1.69E-46 |
| MS.gene050563 | MS.gene069330 | 0.893258 | 7.43E-75 | -1.69E-46 |
| MS.gene050584 | MS.gene069330 | 0.881961 | 1.55E-70 | -1.69E-46 |
| MS.gene050585 | MS.gene069330 | 0.876158 | 1.74E-68 | -1.69E-46 |
| MS.gene050587 | MS.gene069330 | 0.908425 | 1.73E-81 | -1.69E-46 |
| MS.gene05143 | MS.gene069330 | 0.852764 | 3.73E-61 | -1.69E-46 |
| MS.gene051789 | MS.gene069330 | 0.850646 | 1.48E-60 | -1.69E-46 |
| MS.gene052142 | MS.gene069330 | 0.905276 | 5.09E-80 | -1.69E-46 |
| MS.gene052698 | MS.gene069330 | 0.840631 | 7.74E-58 | -1.69E-46 |
| MS.gene053074 | MS.gene069330 | 0.818812 | 1.61E-52 | -1.69E-46 |
| MS.gene053383 | MS.gene069330 | 0.917614 | 4.28E-86 | -1.69E-46 |
| MS.gene05456 | MS.gene069330 | 0.908719 | 1.26E-81 | -1.69E-46 |
| MS.gene055359 | MS.gene069330 | 0.879065 | 1.69E-69 | -1.69E-46 |
| MS.gene057022 | MS.gene069330 | 0.833051 | 6.66E-56 | -1.69E-46 |
| MS.gene057881 | MS.gene069330 | 0.802451 | 5.57E-49 | -1.69E-46 |
| MS.gene058918 | MS.gene069330 | 0.830897 | 2.27E-55 | -1.69E-46 |
| MS.gene059006 | MS.gene069330 | 0.866499 | 2.73E-65 | -1.69E-46 |
| MS.gene059632 | MS.gene069330 | 0.823429 | 1.39E-53 | -1.69E-46 |
| MS.gene059768 | MS.gene069330 | 0.886367 | 3.64E-72 | -1.69E-46 |
| MS.gene060513 | MS.gene069330 | 0.803756 | 3.00E-49 | -1.69E-46 |
| MS.gene060691 | MS.gene069330 | 0.899372 | 2.12E-77 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069330.t1 | MTR_3g089570 | 94.964 | 278 | 7 | 3 | 1 | 277 | 1 | 272 | 0.0 | 503 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene069330.t1 | AT2G42840 | 57.627 | 177 | 52 | 5 | 118 | 276 | 134 | 305 | 2.30e-57 | 186 |
Find 107 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGGTTGGTGGGGAAATA+TGG | 0.109920 | 3.3:-39095093 | MS.gene069330:CDS |
| CTTACACAACTGACCAAGTT+AGG | 0.249344 | 3.3:-39094920 | MS.gene069330:CDS |
| GGACTCATCCAGGAATAATA+TGG | 0.312895 | 3.3:-39095121 | MS.gene069330:CDS |
| GCAACTTACTTGCAAGTTCC+AGG | 0.317360 | 3.3:+39095889 | None:intergenic |
| GAAATATGGGAAATGCCTTT+GGG | 0.350660 | 3.3:-39095079 | MS.gene069330:CDS |
| GGAAATATGGGAAATGCCTT+TGG | 0.350960 | 3.3:-39095080 | MS.gene069330:CDS |
| AGAATTCCCCATATTATTCC+TGG | 0.352015 | 3.3:+39095113 | None:intergenic |
| CCAGGATCTATTGGTGTAGA+TGG | 0.361860 | 3.3:+39095961 | None:intergenic |
| TTTGGGGTGACTAATATTCC+AGG | 0.367636 | 3.3:-39095062 | MS.gene069330:CDS |
| CCACTTGATGGAGGGTTTGA+TGG | 0.369108 | 3.3:+39096048 | None:intergenic |
| GGAATAATATGGGGAATTCT+AGG | 0.377925 | 3.3:-39095110 | MS.gene069330:CDS |
| CCTTCCCCATCTCCCTTCCC+TGG | 0.386576 | 3.3:-39095907 | MS.gene069330:CDS |
| TCAACAGTGGTGGAGATTAC+AGG | 0.395030 | 3.3:+39096452 | None:intergenic |
| ACTGTTGAAGTTCCACATTC+AGG | 0.402073 | 3.3:-39096437 | MS.gene069330:CDS |
| TGCTTCATTTCTCAACTCCT+TGG | 0.403101 | 3.3:-39094958 | MS.gene069330:CDS |
| TTGTGTTGCAGCAGCCTTGT+TGG | 0.413820 | 3.3:+39094872 | None:intergenic |
| CTAGGTTGGTGGGGAAATAT+GGG | 0.416346 | 3.3:-39095092 | MS.gene069330:CDS |
| GGTGGATCAGTTGGAGTTGA+TGG | 0.420624 | 3.3:+39096006 | None:intergenic |
| ATCAATTAATTTCATGGTCT+AGG | 0.428985 | 3.3:+39094810 | None:intergenic |
| CTTCATTTGCCATCTTGAAA+AGG | 0.430225 | 3.3:+39094844 | None:intergenic |
| CTAACTTGGTCAGTTGTGTA+AGG | 0.430724 | 3.3:+39094921 | None:intergenic |
| GATGGGGAAGGAAGGAAAGG+TGG | 0.432710 | 3.3:+39095919 | None:intergenic |
| ACTCCAACACCACCTTCAAC+TGG | 0.433721 | 3.3:-39096141 | MS.gene069330:CDS |
| AAAGGTGGTGTAGGAACAGT+AGG | 0.438620 | 3.3:+39095934 | None:intergenic |
| CAAGTTCCAGGGAAGGGAGA+TGG | 0.440600 | 3.3:+39095901 | None:intergenic |
| GGAGGGTTTGATGGTGTTGA+AGG | 0.443891 | 3.3:+39096057 | None:intergenic |
| GTAGGAGTGCCAGGATCTAT+TGG | 0.447810 | 3.3:+39095952 | None:intergenic |
| GATGGTGTTGAAGGAGTAGA+AGG | 0.457615 | 3.3:+39096093 | None:intergenic |
| GACTCATCCAGGAATAATAT+GGG | 0.459996 | 3.3:-39095120 | MS.gene069330:CDS |
| TTTGATGGTGTTGAAGGTGT+TGG | 0.464631 | 3.3:+39096063 | None:intergenic |
| ATGCAAACCTGTCCCTAACT+TGG | 0.469578 | 3.3:+39094907 | None:intergenic |
| AACACAAGAACTGATGGTTT+AGG | 0.469650 | 3.3:-39095002 | MS.gene069330:CDS |
| TTATAGTATCCACCACTTGA+TGG | 0.470071 | 3.3:+39096036 | None:intergenic |
| AAGTTCCAGGGAAGGGAGAT+GGG | 0.476491 | 3.3:+39095902 | None:intergenic |
| GGATTATGTGATGGTGTTGA+AGG | 0.479819 | 3.3:+39096084 | None:intergenic |
| CATCCAGTTGAAGGTGGTGT+TGG | 0.495066 | 3.3:+39096138 | None:intergenic |
| GGAAGGGAGATGGGGAAGGA+AGG | 0.502197 | 3.3:+39095911 | None:intergenic |
| GTAGGAACAGTAGGAGTGCC+AGG | 0.503622 | 3.3:+39095943 | None:intergenic |
| CTTTCCAACACAAGAACTGA+TGG | 0.504329 | 3.3:-39095008 | MS.gene069330:CDS |
| GGAGATGGGGAAGGAAGGAA+AGG | 0.504748 | 3.3:+39095916 | None:intergenic |
| AAGCACTGTGAACATTGAAA+AGG | 0.512709 | 3.3:+39096505 | None:intergenic |
| TAATATGGGGAATTCTAGGT+TGG | 0.520470 | 3.3:-39095106 | MS.gene069330:CDS |
| AATATTCCAGGGTTTACTCC+TGG | 0.524426 | 3.3:-39095050 | MS.gene069330:CDS |
| TAAACCATCAGTTCTTGTGT+TGG | 0.525884 | 3.3:+39095004 | None:intergenic |
| TTACACAACTGACCAAGTTA+GGG | 0.525939 | 3.3:-39094919 | MS.gene069330:CDS |
| AGCTACTGGAGGACTCATCC+AGG | 0.526289 | 3.3:-39095131 | MS.gene069330:CDS |
| GAAGGAAGGAAAGGTGGTGT+AGG | 0.527882 | 3.3:+39095925 | None:intergenic |
| GAATCAGAGAAAACTGATGA+AGG | 0.528354 | 3.3:+39096410 | None:intergenic |
| TATGGGGAATTCTAGGTTGG+TGG | 0.528656 | 3.3:-39095103 | MS.gene069330:CDS |
| CCAGGGAAGGGAGATGGGGA+AGG | 0.539492 | 3.3:+39095907 | None:intergenic |
| GAATATCCACATCCAGTTGA+AGG | 0.540702 | 3.3:+39096129 | None:intergenic |
| CAACTGACCAAGTTAGGGAC+AGG | 0.541089 | 3.3:-39094914 | MS.gene069330:CDS |
| ACACCACCTTCAACTGGATG+TGG | 0.541466 | 3.3:-39096135 | MS.gene069330:CDS |
| AGGAGTACTTCTCCATCTCA+TGG | 0.541512 | 3.3:-39096222 | MS.gene069330:CDS |
| GAACATTGAAAAGGAAACAT+AGG | 0.542372 | 3.3:+39096514 | None:intergenic |
| CCATCTACACCAATAGATCC+TGG | 0.545229 | 3.3:-39095961 | MS.gene069330:CDS |
| TACTTGCAAGTTCCAGGGAA+GGG | 0.548718 | 3.3:+39095895 | None:intergenic |
| GTTGGAAAGTGCTTGTGGTA+AGG | 0.554876 | 3.3:+39095022 | None:intergenic |
| AAAGTGACTGGTGGATCAGT+TGG | 0.565302 | 3.3:+39095997 | None:intergenic |
| CAACTTACTTGCAAGTTCCA+GGG | 0.565925 | 3.3:+39095890 | None:intergenic |
| GGTGGTGAGCTTCCATGAGA+TGG | 0.567793 | 3.3:+39096210 | None:intergenic |
| TTGGGGTGACTAATATTCCA+GGG | 0.568346 | 3.3:-39095061 | MS.gene069330:CDS |
| GGATCAGTTGGAGTTGATGG+TGG | 0.570978 | 3.3:+39096009 | None:intergenic |
| AACATAATGCAGGCCCACAT+AGG | 0.579774 | 3.3:-39096242 | MS.gene069330:intron |
| GATGGTGGTGTCAAAGTGAC+TGG | 0.584003 | 3.3:+39095985 | None:intergenic |
| GAAGGTGTTGGATTATGTGA+TGG | 0.585952 | 3.3:+39096075 | None:intergenic |
| GGTGATGAGCTTCCATGTGA+AGG | 0.591177 | 3.3:+39096189 | None:intergenic |
| ATGGGGAATTCTAGGTTGGT+GGG | 0.591873 | 3.3:-39095102 | MS.gene069330:CDS |
| CAGTTGTGTAAGGGAACTTG+TGG | 0.593107 | 3.3:+39094931 | None:intergenic |
| AGTATCCACCACTTGATGGA+GGG | 0.594468 | 3.3:+39096040 | None:intergenic |
| GCTTGTGGTAAGGTTAGACC+AGG | 0.598119 | 3.3:+39095032 | None:intergenic |
| TTACTTGCAAGTTCCAGGGA+AGG | 0.600468 | 3.3:+39095894 | None:intergenic |
| AAATATGGGAAATGCCTTTG+GGG | 0.602185 | 3.3:-39095078 | MS.gene069330:CDS |
| AGTTCCAGGGAAGGGAGATG+GGG | 0.604246 | 3.3:+39095903 | None:intergenic |
| TCACCACCATCACATGGTGG+AGG | 0.604865 | 3.3:-39096171 | MS.gene069330:CDS |
| GATGGAGAAGTACTCCTATG+TGG | 0.608784 | 3.3:+39096228 | None:intergenic |
| GGAAGCTCACCACCTTCACA+TGG | 0.609355 | 3.3:-39096201 | MS.gene069330:CDS |
| CACCACCATCACATGGTGGA+GGG | 0.611558 | 3.3:-39096170 | MS.gene069330:CDS |
| ATGGAGAAGTACTCCTATGT+GGG | 0.616241 | 3.3:+39096229 | None:intergenic |
| TAACTTGGTCAGTTGTGTAA+GGG | 0.620778 | 3.3:+39094922 | None:intergenic |
| TAGTATCCACCACTTGATGG+AGG | 0.621034 | 3.3:+39096039 | None:intergenic |
| AGCTCATCACCACCATCACA+TGG | 0.624071 | 3.3:-39096177 | MS.gene069330:CDS |
| TAAGACCCTCCACCATGTGA+TGG | 0.626381 | 3.3:+39096165 | None:intergenic |
| GTTAGACCAGGAGTAAACCC+TGG | 0.627036 | 3.3:+39095044 | None:intergenic |
| TTAGGAGCACTCTACAGAGA+AGG | 0.629627 | 3.3:-39094984 | MS.gene069330:CDS |
| CCATCAAACCCTCCATCAAG+TGG | 0.632528 | 3.3:-39096048 | MS.gene069330:CDS |
| ATTGGTGTAGATGGAGATGG+TGG | 0.635553 | 3.3:+39095970 | None:intergenic |
| TGGGGAATTCTAGGTTGGTG+GGG | 0.637604 | 3.3:-39095101 | MS.gene069330:CDS |
| ATCATCACTTCACTCCAACA+AGG | 0.638513 | 3.3:-39094886 | MS.gene069330:CDS |
| GATGAGCTTCCATGTGAAGG+TGG | 0.651216 | 3.3:+39096192 | None:intergenic |
| TATCCACATCCAGTTGAAGG+TGG | 0.658842 | 3.3:+39096132 | None:intergenic |
| TCAAACCCTCCATCAAGTGG+TGG | 0.659955 | 3.3:-39096045 | MS.gene069330:CDS |
| CTTGTGTTGGAAAGTGCTTG+TGG | 0.664673 | 3.3:+39095017 | None:intergenic |
| GATGAAGGAGTTCCTGAATG+TGG | 0.665673 | 3.3:+39096425 | None:intergenic |
| ATGTGGAACTTCAACAGTGG+TGG | 0.667826 | 3.3:+39096442 | None:intergenic |
| TCTATTGGTGTAGATGGAGA+TGG | 0.668449 | 3.3:+39095967 | None:intergenic |
| GGTGGTGTCAAAGTGACTGG+TGG | 0.668630 | 3.3:+39095988 | None:intergenic |
| GACCCTCCACCATGTGATGG+TGG | 0.670898 | 3.3:+39096168 | None:intergenic |
| AGGGAACTTGTGGTTCACCA+AGG | 0.670949 | 3.3:+39094941 | None:intergenic |
| ACTCATCCAGGAATAATATG+GGG | 0.672725 | 3.3:-39095119 | MS.gene069330:CDS |
| TGGAATATTAGTCACCCCAA+AGG | 0.674127 | 3.3:+39095064 | None:intergenic |
| GGAGTAGAAGGGTCATGTGG+TGG | 0.678752 | 3.3:+39096105 | None:intergenic |
| GAAGGAGTAGAAGGGTCATG+TGG | 0.698916 | 3.3:+39096102 | None:intergenic |
| ATGGTGTTGAAGGAGTAGAA+GGG | 0.703404 | 3.3:+39096094 | None:intergenic |
| TGGAGATTACAGGAATGACA+AGG | 0.719034 | 3.3:+39096462 | None:intergenic |
| TGAATGTGGAACTTCAACAG+TGG | 0.722345 | 3.3:+39096439 | None:intergenic |
| TCATCACCACCATCACATGG+TGG | 0.774824 | 3.3:-39096174 | MS.gene069330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAAAATATTAACAATG+TGG | + | chr3.3:39095500-39095519 | None:intergenic | 10.0% |
| !! | TTAAATATTAAACAATGTTA+GGG | + | chr3.3:39095044-39095063 | None:intergenic | 10.0% |
| !!! | ATACTACTTTTTTTTTTTAA+TGG | + | chr3.3:39096076-39096095 | None:intergenic | 10.0% |
| !! | ATATATATTAAAACAAGAGA+TGG | + | chr3.3:39096048-39096067 | None:intergenic | 15.0% |
| !! | CTTAAATATTAAACAATGTT+AGG | + | chr3.3:39095045-39095064 | None:intergenic | 15.0% |
| !! | TAATATTTGTTTCAAATAAC+AGG | - | chr3.3:39095569-39095588 | MS.gene069330:intron | 15.0% |
| !! | TGAAACAAATATTATGAAAT+AGG | + | chr3.3:39095563-39095582 | None:intergenic | 15.0% |
| !! | TTAAATCCATATACATAAAA+GGG | + | chr3.3:39095833-39095852 | None:intergenic | 15.0% |
| !! | AGCTAAACTAAAATTTAATG+TGG | + | chr3.3:39095624-39095643 | None:intergenic | 20.0% |
| !! | GTTAAATCCATATACATAAA+AGG | + | chr3.3:39095834-39095853 | None:intergenic | 20.0% |
| !! | TAATACTACTTATCTTTCTA+AGG | + | chr3.3:39095872-39095891 | None:intergenic | 20.0% |
| !!! | ATGAATAAAGTCCTTTTTAT+AGG | + | chr3.3:39095672-39095691 | None:intergenic | 20.0% |
| !!! | GTTTTGATAAGTAGTATATT+TGG | - | chr3.3:39095933-39095952 | MS.gene069330:CDS | 20.0% |
| !!! | TGAATAAAGTCCTTTTTATA+GGG | + | chr3.3:39095671-39095690 | None:intergenic | 20.0% |
| !!! | TTAAATTTTAGTTTAGCTAG+TGG | - | chr3.3:39095626-39095645 | MS.gene069330:intron | 20.0% |
| !!! | ACAGATTAGTAGTTTTAACA+AGG | - | chr3.3:39096135-39096154 | MS.gene069330:CDS | 25.0% |
| !!! | ATGTCATTTTCCCTATAAAA+AGG | - | chr3.3:39095658-39095677 | MS.gene069330:intron | 25.0% |
| GAACATTGAAAAGGAAACAT+AGG | + | chr3.3:39094840-39094859 | None:intergenic | 30.0% | |
| GGTTACTAGATATAACTACA+TGG | + | chr3.3:39095023-39095042 | None:intergenic | 30.0% | |
| TGTTGTGTTTAACATAATGC+AGG | - | chr3.3:39095099-39095118 | MS.gene069330:CDS | 30.0% | |
| TTCAAATAACAGGAGAGATA+TGG | - | chr3.3:39095579-39095598 | MS.gene069330:intron | 30.0% | |
| ! | GAAACACCCTTTTATGTATA+TGG | - | chr3.3:39095824-39095843 | MS.gene069330:intron | 30.0% |
| ! | TACTTATCTTTCTAAGGAGT+TGG | + | chr3.3:39095866-39095885 | None:intergenic | 30.0% |
| !! | TTTTCAAGATGGCAAATGAA+GGG | - | chr3.3:39096509-39096528 | MS.gene069330:CDS | 30.0% |
| AAATATGGGAAATGCCTTTG+GGG | - | chr3.3:39096273-39096292 | MS.gene069330:intron | 35.0% | |
| AACACAAGAACTGATGGTTT+AGG | - | chr3.3:39096349-39096368 | MS.gene069330:intron | 35.0% | |
| ACTCATCCAGGAATAATATG+GGG | - | chr3.3:39096232-39096251 | MS.gene069330:CDS | 35.0% | |
| AGAATTCCCCATATTATTCC+TGG | + | chr3.3:39096241-39096260 | None:intergenic | 35.0% | |
| CTTCATTTGCCATCTTGAAA+AGG | + | chr3.3:39096510-39096529 | None:intergenic | 35.0% | |
| GAAATATGGGAAATGCCTTT+GGG | - | chr3.3:39096272-39096291 | MS.gene069330:intron | 35.0% | |
| GAATCAGAGAAAACTGATGA+AGG | + | chr3.3:39094944-39094963 | None:intergenic | 35.0% | |
| GACTCATCCAGGAATAATAT+GGG | - | chr3.3:39096231-39096250 | MS.gene069330:CDS | 35.0% | |
| GGAATAATATGGGGAATTCT+AGG | - | chr3.3:39096241-39096260 | MS.gene069330:intron | 35.0% | |
| TAAACCATCAGTTCTTGTGT+TGG | + | chr3.3:39096350-39096369 | None:intergenic | 35.0% | |
| TAACTTGGTCAGTTGTGTAA+GGG | + | chr3.3:39096432-39096451 | None:intergenic | 35.0% | |
| TAATATGGGGAATTCTAGGT+TGG | - | chr3.3:39096245-39096264 | MS.gene069330:intron | 35.0% | |
| TAGGGAAAATGACATAACAC+TGG | + | chr3.3:39095653-39095672 | None:intergenic | 35.0% | |
| TTACACAACTGACCAAGTTA+GGG | - | chr3.3:39096432-39096451 | MS.gene069330:CDS | 35.0% | |
| TTATAGTATCCACCACTTGA+TGG | + | chr3.3:39095318-39095337 | None:intergenic | 35.0% | |
| ! | AAGCACTGTGAACATTGAAA+AGG | + | chr3.3:39094849-39094868 | None:intergenic | 35.0% |
| ! | TTTCTGTGATTTTCAGCTAC+TGG | - | chr3.3:39096206-39096225 | MS.gene069330:CDS | 35.0% |
| !! | CTTTTCAAGATGGCAAATGA+AGG | - | chr3.3:39096508-39096527 | MS.gene069330:CDS | 35.0% |
| AATATTCCAGGGTTTACTCC+TGG | - | chr3.3:39096301-39096320 | MS.gene069330:intron | 40.0% | |
| ACTGTTGAAGTTCCACATTC+AGG | - | chr3.3:39094914-39094933 | MS.gene069330:CDS | 40.0% | |
| ATCATCACTTCACTCCAACA+AGG | - | chr3.3:39096465-39096484 | MS.gene069330:CDS | 40.0% | |
| CAACTTACTTGCAAGTTCCA+GGG | + | chr3.3:39095464-39095483 | None:intergenic | 40.0% | |
| CTAACTTGGTCAGTTGTGTA+AGG | + | chr3.3:39096433-39096452 | None:intergenic | 40.0% | |
| CTTACACAACTGACCAAGTT+AGG | - | chr3.3:39096431-39096450 | MS.gene069330:CDS | 40.0% | |
| CTTTCCAACACAAGAACTGA+TGG | - | chr3.3:39096343-39096362 | MS.gene069330:intron | 40.0% | |
| GAATATCCACATCCAGTTGA+AGG | + | chr3.3:39095225-39095244 | None:intergenic | 40.0% | |
| GGAAATATGGGAAATGCCTT+TGG | - | chr3.3:39096271-39096290 | MS.gene069330:intron | 40.0% | |
| GGACTCATCCAGGAATAATA+TGG | - | chr3.3:39096230-39096249 | MS.gene069330:CDS | 40.0% | |
| TCTATTGGTGTAGATGGAGA+TGG | + | chr3.3:39095387-39095406 | None:intergenic | 40.0% | |
| TGAATGTGGAACTTCAACAG+TGG | + | chr3.3:39094915-39094934 | None:intergenic | 40.0% | |
| TGCTTCATTTCTCAACTCCT+TGG | - | chr3.3:39096393-39096412 | MS.gene069330:intron | 40.0% | |
| TGGAATATTAGTCACCCCAA+AGG | + | chr3.3:39096290-39096309 | None:intergenic | 40.0% | |
| TGGAGATTACAGGAATGACA+AGG | + | chr3.3:39094892-39094911 | None:intergenic | 40.0% | |
| TTGGGGTGACTAATATTCCA+GGG | - | chr3.3:39096290-39096309 | MS.gene069330:intron | 40.0% | |
| ! | ATGGTGTTGAAGGAGTAGAA+GGG | + | chr3.3:39095260-39095279 | None:intergenic | 40.0% |
| ! | GGATTATGTGATGGTGTTGA+AGG | + | chr3.3:39095270-39095289 | None:intergenic | 40.0% |
| ! | TTTGGGGTGACTAATATTCC+AGG | - | chr3.3:39096289-39096308 | MS.gene069330:intron | 40.0% |
| !! | ACAAGCTCACCTTTTCAAGA+TGG | - | chr3.3:39096498-39096517 | MS.gene069330:CDS | 40.0% |
| !! | ATGGAGAAGTACTCCTATGT+GGG | + | chr3.3:39095125-39095144 | None:intergenic | 40.0% |
| !! | GAAGGTGTTGGATTATGTGA+TGG | + | chr3.3:39095279-39095298 | None:intergenic | 40.0% |
| !! | TTTGATGGTGTTGAAGGTGT+TGG | + | chr3.3:39095291-39095310 | None:intergenic | 40.0% |
| AAAGGTGGTGTAGGAACAGT+AGG | + | chr3.3:39095420-39095439 | None:intergenic | 45.0% | |
| AACATAATGCAGGCCCACAT+AGG | - | chr3.3:39095109-39095128 | MS.gene069330:CDS | 45.0% | |
| AGTATCCACCACTTGATGGA+GGG | + | chr3.3:39095314-39095333 | None:intergenic | 45.0% | |
| ATGCAAACCTGTCCCTAACT+TGG | + | chr3.3:39096447-39096466 | None:intergenic | 45.0% | |
| ATGTGGAACTTCAACAGTGG+TGG | + | chr3.3:39094912-39094931 | None:intergenic | 45.0% | |
| ATTGGTGTAGATGGAGATGG+TGG | + | chr3.3:39095384-39095403 | None:intergenic | 45.0% | |
| CAGTTGTGTAAGGGAACTTG+TGG | + | chr3.3:39096423-39096442 | None:intergenic | 45.0% | |
| CCAGGATCTATTGGTGTAGA+TGG | + | chr3.3:39095393-39095412 | None:intergenic | 45.0% | |
| CCATCTACACCAATAGATCC+TGG | - | chr3.3:39095390-39095409 | MS.gene069330:intron | 45.0% | |
| GATGAAGGAGTTCCTGAATG+TGG | + | chr3.3:39094929-39094948 | None:intergenic | 45.0% | |
| GCAACTTACTTGCAAGTTCC+AGG | + | chr3.3:39095465-39095484 | None:intergenic | 45.0% | |
| TACTTGCAAGTTCCAGGGAA+GGG | + | chr3.3:39095459-39095478 | None:intergenic | 45.0% | |
| TAGTATCCACCACTTGATGG+AGG | + | chr3.3:39095315-39095334 | None:intergenic | 45.0% | |
| TATCCACATCCAGTTGAAGG+TGG | + | chr3.3:39095222-39095241 | None:intergenic | 45.0% | |
| TTACTTGCAAGTTCCAGGGA+AGG | + | chr3.3:39095460-39095479 | None:intergenic | 45.0% | |
| ! | AAAGTGACTGGTGGATCAGT+TGG | + | chr3.3:39095357-39095376 | None:intergenic | 45.0% |
| ! | CTGTGATTTTCAGCTACTGG+AGG | - | chr3.3:39096209-39096228 | MS.gene069330:CDS | 45.0% |
| ! | GATGGTGTTGAAGGAGTAGA+AGG | + | chr3.3:39095261-39095280 | None:intergenic | 45.0% |
| ! | TATGGGGAATTCTAGGTTGG+TGG | - | chr3.3:39096248-39096267 | MS.gene069330:intron | 45.0% |
| ! | TCAACAGTGGTGGAGATTAC+AGG | + | chr3.3:39094902-39094921 | None:intergenic | 45.0% |
| !! | AGGAGTACTTCTCCATCTCA+TGG | - | chr3.3:39095129-39095148 | MS.gene069330:CDS | 45.0% |
| !! | ATGGGGAATTCTAGGTTGGT+GGG | - | chr3.3:39096249-39096268 | MS.gene069330:intron | 45.0% |
| !! | CTAGGTTGGTGGGGAAATAT+GGG | - | chr3.3:39096259-39096278 | MS.gene069330:intron | 45.0% |
| !! | CTTGTGTTGGAAAGTGCTTG+TGG | + | chr3.3:39096337-39096356 | None:intergenic | 45.0% |
| !! | GATGGAGAAGTACTCCTATG+TGG | + | chr3.3:39095126-39095145 | None:intergenic | 45.0% |
| !! | GTTGGAAAGTGCTTGTGGTA+AGG | + | chr3.3:39096332-39096351 | None:intergenic | 45.0% |
| !! | TCTAGGTTGGTGGGGAAATA+TGG | - | chr3.3:39096258-39096277 | MS.gene069330:intron | 45.0% |
| !! | TTAGGAGCACTCTACAGAGA+AGG | - | chr3.3:39096367-39096386 | MS.gene069330:intron | 45.0% |
| AAGTTCCAGGGAAGGGAGAT+GGG | + | chr3.3:39095452-39095471 | None:intergenic | 50.0% | |
| ACACCACCTTCAACTGGATG+TGG | - | chr3.3:39095216-39095235 | MS.gene069330:intron | 50.0% | |
| ACTCCAACACCACCTTCAAC+TGG | - | chr3.3:39095210-39095229 | MS.gene069330:intron | 50.0% | |
| AGCTCATCACCACCATCACA+TGG | - | chr3.3:39095174-39095193 | MS.gene069330:intron | 50.0% | |
| AGGGAACTTGTGGTTCACCA+AGG | + | chr3.3:39096413-39096432 | None:intergenic | 50.0% | |
| CAACTGACCAAGTTAGGGAC+AGG | - | chr3.3:39096437-39096456 | MS.gene069330:CDS | 50.0% | |
| CATCCAGTTGAAGGTGGTGT+TGG | + | chr3.3:39095216-39095235 | None:intergenic | 50.0% | |
| CCACTTGATGGAGGGTTTGA+TGG | + | chr3.3:39095306-39095325 | None:intergenic | 50.0% | |
| CCATCAAACCCTCCATCAAG+TGG | - | chr3.3:39095303-39095322 | MS.gene069330:intron | 50.0% | |
| GAAGGAAGGAAAGGTGGTGT+AGG | + | chr3.3:39095429-39095448 | None:intergenic | 50.0% | |
| GAAGGAGTAGAAGGGTCATG+TGG | + | chr3.3:39095252-39095271 | None:intergenic | 50.0% | |
| GATGAGCTTCCATGTGAAGG+TGG | + | chr3.3:39095162-39095181 | None:intergenic | 50.0% | |
| GCTTGTGGTAAGGTTAGACC+AGG | + | chr3.3:39096322-39096341 | None:intergenic | 50.0% | |
| GGTGATGAGCTTCCATGTGA+AGG | + | chr3.3:39095165-39095184 | None:intergenic | 50.0% | |
| GGTGGATCAGTTGGAGTTGA+TGG | + | chr3.3:39095348-39095367 | None:intergenic | 50.0% | |
| GTTAGACCAGGAGTAAACCC+TGG | + | chr3.3:39096310-39096329 | None:intergenic | 50.0% | |
| TAAGACCCTCCACCATGTGA+TGG | + | chr3.3:39095189-39095208 | None:intergenic | 50.0% | |
| TCAAACCCTCCATCAAGTGG+TGG | - | chr3.3:39095306-39095325 | MS.gene069330:intron | 50.0% | |
| TCATCACCACCATCACATGG+TGG | - | chr3.3:39095177-39095196 | MS.gene069330:intron | 50.0% | |
| ! | GATGGTGGTGTCAAAGTGAC+TGG | + | chr3.3:39095369-39095388 | None:intergenic | 50.0% |
| ! | TTGTGTTGCAGCAGCCTTGT+TGG | + | chr3.3:39096482-39096501 | None:intergenic | 50.0% |
| !! | GGAGGGTTTGATGGTGTTGA+AGG | + | chr3.3:39095297-39095316 | None:intergenic | 50.0% |
| !! | GGATCAGTTGGAGTTGATGG+TGG | + | chr3.3:39095345-39095364 | None:intergenic | 50.0% |
| !! | GTAGGAGTGCCAGGATCTAT+TGG | + | chr3.3:39095402-39095421 | None:intergenic | 50.0% |
| !! | TGGGGAATTCTAGGTTGGTG+GGG | - | chr3.3:39096250-39096269 | MS.gene069330:intron | 50.0% |
| AGCTACTGGAGGACTCATCC+AGG | - | chr3.3:39096220-39096239 | MS.gene069330:CDS | 55.0% | |
| AGTTCCAGGGAAGGGAGATG+GGG | + | chr3.3:39095451-39095470 | None:intergenic | 55.0% | |
| CAAGTTCCAGGGAAGGGAGA+TGG | + | chr3.3:39095453-39095472 | None:intergenic | 55.0% | |
| GATGGGGAAGGAAGGAAAGG+TGG | + | chr3.3:39095435-39095454 | None:intergenic | 55.0% | |
| GGAAGCTCACCACCTTCACA+TGG | - | chr3.3:39095150-39095169 | MS.gene069330:intron | 55.0% | |
| GGAGATGGGGAAGGAAGGAA+AGG | + | chr3.3:39095438-39095457 | None:intergenic | 55.0% | |
| GGAGTAGAAGGGTCATGTGG+TGG | + | chr3.3:39095249-39095268 | None:intergenic | 55.0% | |
| GGTGGTGAGCTTCCATGAGA+TGG | + | chr3.3:39095144-39095163 | None:intergenic | 55.0% | |
| TCACCACCATCACATGGTGG+AGG | - | chr3.3:39095180-39095199 | MS.gene069330:intron | 55.0% | |
| ! | CACCACCATCACATGGTGGA+GGG | - | chr3.3:39095181-39095200 | MS.gene069330:intron | 55.0% |
| ! | GGTGGTGTCAAAGTGACTGG+TGG | + | chr3.3:39095366-39095385 | None:intergenic | 55.0% |
| !! | GTAGGAACAGTAGGAGTGCC+AGG | + | chr3.3:39095411-39095430 | None:intergenic | 55.0% |
| GACCCTCCACCATGTGATGG+TGG | + | chr3.3:39095186-39095205 | None:intergenic | 60.0% | |
| GGAAGGGAGATGGGGAAGGA+AGG | + | chr3.3:39095443-39095462 | None:intergenic | 60.0% | |
| CCAGGGAAGGGAGATGGGGA+AGG | + | chr3.3:39095447-39095466 | None:intergenic | 65.0% | |
| CCTTCCCCATCTCCCTTCCC+TGG | - | chr3.3:39095444-39095463 | MS.gene069330:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 39094821 | 39096552 | 39094821 | ID=MS.gene069330 |
| chr3.3 | mRNA | 39094821 | 39096552 | 39094821 | ID=MS.gene069330.t1;Parent=MS.gene069330 |
| chr3.3 | exon | 39096405 | 39096552 | 39096405 | ID=MS.gene069330.t1.exon1;Parent=MS.gene069330.t1 |
| chr3.3 | CDS | 39096405 | 39096552 | 39096405 | ID=cds.MS.gene069330.t1;Parent=MS.gene069330.t1 |
| chr3.3 | exon | 39095898 | 39096252 | 39095898 | ID=MS.gene069330.t1.exon2;Parent=MS.gene069330.t1 |
| chr3.3 | CDS | 39095898 | 39096252 | 39095898 | ID=cds.MS.gene069330.t1;Parent=MS.gene069330.t1 |
| chr3.3 | exon | 39094821 | 39095151 | 39094821 | ID=MS.gene069330.t1.exon3;Parent=MS.gene069330.t1 |
| chr3.3 | CDS | 39094821 | 39095151 | 39094821 | ID=cds.MS.gene069330.t1;Parent=MS.gene069330.t1 |
| Gene Sequence |
| Protein sequence |
