Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070005.t1 | XP_013462298.1 | 96.6 | 177 | 6 | 0 | 1 | 177 | 20 | 196 | 4.10E-92 | 347.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070005.t1 | Q5QMM3 | 70.1 | 157 | 44 | 3 | 1 | 156 | 30 | 184 | 2.2e-54 | 213.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070005.t1 | A0A072V4R9 | 96.6 | 177 | 6 | 0 | 1 | 177 | 20 | 196 | 2.9e-92 | 347.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene070005.t1 | TF | HB-WOX |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049190 | MS.gene070005 | 0.805435 | 1.34E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene070005 | 0.829261 | 5.68E-55 | -1.69E-46 |
| MS.gene049711 | MS.gene070005 | 0.800481 | 1.41E-48 | -1.69E-46 |
| MS.gene049873 | MS.gene070005 | 0.819229 | 1.30E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene070005 | 0.835413 | 1.70E-56 | -1.69E-46 |
| MS.gene050561 | MS.gene070005 | 0.83397 | 3.93E-56 | -1.69E-46 |
| MS.gene050562 | MS.gene070005 | 0.823903 | 1.08E-53 | -1.69E-46 |
| MS.gene051181 | MS.gene070005 | 0.823555 | 1.30E-53 | -1.69E-46 |
| MS.gene051279 | MS.gene070005 | 0.841112 | 5.79E-58 | -1.69E-46 |
| MS.gene051720 | MS.gene070005 | 0.803786 | 2.95E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene070005 | 0.891089 | 5.46E-74 | -1.69E-46 |
| MS.gene052519 | MS.gene070005 | 0.822352 | 2.48E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene070005 | 0.815281 | 1.00E-51 | -1.69E-46 |
| MS.gene052584 | MS.gene070005 | 0.822706 | 2.05E-53 | -1.69E-46 |
| MS.gene053144 | MS.gene070005 | 0.801415 | 9.10E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene070005 | 0.848345 | 6.50E-60 | -1.69E-46 |
| MS.gene054584 | MS.gene070005 | 0.804954 | 1.69E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene070005 | 0.838664 | 2.51E-57 | -1.69E-46 |
| MS.gene055586 | MS.gene070005 | 0.806132 | 9.54E-50 | -1.69E-46 |
| MS.gene055589 | MS.gene070005 | 0.822433 | 2.37E-53 | -1.69E-46 |
| MS.gene056050 | MS.gene070005 | 0.833472 | 5.23E-56 | -1.69E-46 |
| MS.gene056366 | MS.gene070005 | 0.83119 | 1.92E-55 | -1.69E-46 |
| MS.gene05686 | MS.gene070005 | 0.814965 | 1.18E-51 | -1.69E-46 |
| MS.gene057444 | MS.gene070005 | 0.824072 | 9.84E-54 | -1.69E-46 |
| MS.gene058037 | MS.gene070005 | 0.821664 | 3.58E-53 | -1.69E-46 |
| MS.gene059015 | MS.gene070005 | 0.842356 | 2.72E-58 | -1.69E-46 |
| MS.gene059625 | MS.gene070005 | 0.816131 | 6.48E-52 | -1.69E-46 |
| MS.gene06094 | MS.gene070005 | 0.806102 | 9.68E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070005.t1 | MTR_3g115620 | 96.067 | 178 | 7 | 0 | 1 | 178 | 20 | 197 | 2.84e-129 | 362 |
| MS.gene070005.t1 | MTR_1g115315 | 72.297 | 148 | 37 | 3 | 1 | 148 | 25 | 168 | 2.60e-72 | 219 |
| MS.gene070005.t1 | MTR_1g115315 | 72.297 | 148 | 37 | 3 | 1 | 148 | 25 | 168 | 3.07e-72 | 219 |
| MS.gene070005.t1 | MTR_7g023810 | 47.753 | 178 | 67 | 4 | 1 | 175 | 22 | 176 | 5.34e-45 | 147 |
| MS.gene070005.t1 | MTR_2g015000 | 37.363 | 91 | 56 | 1 | 33 | 122 | 24 | 114 | 3.05e-15 | 73.2 |
| MS.gene070005.t1 | MTR_4g084550 | 44.262 | 61 | 34 | 0 | 63 | 123 | 64 | 124 | 2.61e-14 | 68.2 |
| MS.gene070005.t1 | MTR_7g025010 | 44.444 | 63 | 35 | 0 | 61 | 123 | 45 | 107 | 2.42e-13 | 67.8 |
| MS.gene070005.t1 | MTR_1g019130 | 40.789 | 76 | 45 | 0 | 63 | 138 | 90 | 165 | 2.66e-13 | 66.2 |
| MS.gene070005.t1 | MTR_4g088070 | 36.585 | 82 | 52 | 0 | 61 | 142 | 27 | 108 | 4.05e-13 | 67.0 |
| MS.gene070005.t1 | MTR_1g019130 | 40.789 | 76 | 45 | 0 | 63 | 138 | 90 | 165 | 6.03e-13 | 65.5 |
| MS.gene070005.t1 | MTR_8g107210 | 44.262 | 61 | 34 | 0 | 63 | 123 | 96 | 156 | 2.49e-12 | 64.7 |
| MS.gene070005.t1 | MTR_4g088080 | 45.000 | 60 | 33 | 0 | 61 | 120 | 38 | 97 | 4.68e-12 | 63.5 |
| MS.gene070005.t1 | MTR_4g063735 | 42.623 | 61 | 35 | 0 | 63 | 123 | 25 | 85 | 1.74e-11 | 61.6 |
| MS.gene070005.t1 | MTR_7g060630 | 45.000 | 60 | 33 | 0 | 63 | 122 | 8 | 67 | 5.17e-11 | 59.7 |
| MS.gene070005.t1 | MTR_5g081990 | 38.462 | 65 | 40 | 0 | 63 | 127 | 33 | 97 | 8.74e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070005.t1 | AT4G35550 | 54.774 | 199 | 74 | 3 | 1 | 184 | 38 | 235 | 3.63e-65 | 201 |
| MS.gene070005.t1 | AT1G20700 | 48.889 | 180 | 79 | 4 | 1 | 178 | 31 | 199 | 2.82e-55 | 174 |
| MS.gene070005.t1 | AT1G20700 | 48.603 | 179 | 79 | 4 | 1 | 177 | 31 | 198 | 1.06e-54 | 172 |
| MS.gene070005.t1 | AT1G20700 | 48.507 | 134 | 58 | 2 | 45 | 178 | 15 | 137 | 9.78e-41 | 135 |
| MS.gene070005.t1 | AT1G20710 | 46.667 | 180 | 86 | 5 | 1 | 178 | 15 | 186 | 4.74e-38 | 130 |
| MS.gene070005.t1 | AT5G45980 | 46.774 | 62 | 33 | 0 | 61 | 122 | 53 | 114 | 1.17e-14 | 71.2 |
| MS.gene070005.t1 | AT2G33880 | 45.161 | 62 | 34 | 0 | 61 | 122 | 53 | 114 | 2.56e-14 | 70.5 |
| MS.gene070005.t1 | AT2G33880 | 45.161 | 62 | 34 | 0 | 61 | 122 | 53 | 114 | 2.87e-14 | 70.5 |
| MS.gene070005.t1 | AT1G46480 | 47.541 | 61 | 32 | 0 | 63 | 123 | 90 | 150 | 1.12e-13 | 66.6 |
| MS.gene070005.t1 | AT1G46480 | 47.541 | 61 | 32 | 0 | 63 | 123 | 90 | 150 | 3.37e-13 | 66.2 |
| MS.gene070005.t1 | AT3G18010 | 40.845 | 71 | 42 | 0 | 63 | 133 | 76 | 146 | 3.84e-13 | 67.0 |
| MS.gene070005.t1 | AT3G11260 | 36.458 | 96 | 56 | 2 | 63 | 155 | 24 | 117 | 1.18e-12 | 63.5 |
| MS.gene070005.t1 | AT2G28610 | 46.667 | 60 | 32 | 0 | 63 | 122 | 8 | 67 | 4.54e-12 | 63.2 |
| MS.gene070005.t1 | AT5G05770 | 33.333 | 84 | 55 | 1 | 63 | 146 | 29 | 111 | 8.69e-12 | 60.1 |
| MS.gene070005.t1 | AT5G59340 | 43.077 | 65 | 37 | 0 | 59 | 123 | 10 | 74 | 1.47e-11 | 62.0 |
| MS.gene070005.t1 | AT2G01500 | 35.577 | 104 | 57 | 2 | 49 | 142 | 37 | 140 | 3.17e-11 | 60.8 |
Find 36 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCGAGACTAATGTTTATAAT+TGG | 0.232522 | 3.1:+91469418 | MS.gene070005:CDS |
| TTGAACGAGCTCTTCTGTTC+TGG | 0.269547 | 3.1:-91469443 | None:intergenic |
| TATGTCTTTGATCTTCTGTT+TGG | 0.364760 | 3.1:-91469364 | None:intergenic |
| TCAACTTCTGTGTCTGCCTC+TGG | 0.402663 | 3.1:-91469507 | None:intergenic |
| GTCTTTGATCTTCTGTTTGG+TGG | 0.403902 | 3.1:-91469361 | None:intergenic |
| CGTTGGAGTCCAACGCTGCC+TGG | 0.416225 | 3.1:-91469286 | None:intergenic |
| CTGGACATAAGATAACTTCC+AGG | 0.428363 | 3.1:+91469268 | MS.gene070005:CDS |
| CTCAACAAGCTGATCAGAAA+TGG | 0.436221 | 3.1:-91467951 | None:intergenic |
| TGAGAGTTTATCACCTCATC+GGG | 0.446050 | 3.1:+91469581 | MS.gene070005:CDS |
| CCACTGATGATGGCTTGCTC+TGG | 0.448763 | 3.1:+91469249 | MS.gene070005:CDS |
| TCTTTGATCTTCTGTTTGGT+GGG | 0.460764 | 3.1:-91469360 | None:intergenic |
| TTGAGAGTTTATCACCTCAT+CGG | 0.471970 | 3.1:+91469580 | MS.gene070005:CDS |
| AGTTATGACCGATGAACAAA+TGG | 0.474281 | 3.1:+91467895 | None:intergenic |
| ACCGTGTTGCCCTAGTTCAA+TGG | 0.479896 | 3.1:-91469388 | None:intergenic |
| TAAAAGTTCCATTTGTTCAT+CGG | 0.487682 | 3.1:-91467903 | None:intergenic |
| TACGCTCAAGTATTTGAAGC+TGG | 0.512249 | 3.1:-91469314 | None:intergenic |
| ATTTGAAGCTGGATAGGCGT+TGG | 0.517894 | 3.1:-91469303 | None:intergenic |
| TTAAGATTAATACCTATGTC+AGG | 0.524253 | 3.1:-91469627 | None:intergenic |
| GTACTGTGATCCACTGATGA+TGG | 0.540609 | 3.1:+91469239 | MS.gene070005:CDS |
| TCAAGTATTTGAAGCTGGAT+AGG | 0.541162 | 3.1:-91469309 | None:intergenic |
| AAGCAATCATCTGTTACTGC+AGG | 0.542364 | 3.1:+91469471 | MS.gene070005:CDS |
| GAATGTTCAGGACTGAGACT+TGG | 0.551998 | 3.1:+91469210 | MS.gene070005:intron |
| TCTATGAATACTCACTAACT+AGG | 0.567909 | 3.1:+91469652 | MS.gene070005:CDS |
| ACCTGCGAGGTCGTGTTGAG+TGG | 0.570461 | 3.1:-91467990 | None:intergenic |
| AAAGACATAACCATTGAACT+AGG | 0.570662 | 3.1:+91469378 | MS.gene070005:CDS |
| ACCACTCAACACGACCTCGC+AGG | 0.579613 | 3.1:+91467989 | MS.gene070005:CDS |
| CCAATTATAAACATTAGTCT+CGG | 0.584869 | 3.1:-91469418 | None:intergenic |
| TTTATCACCTCATCGGGTCA+AGG | 0.591799 | 3.1:+91469587 | MS.gene070005:CDS |
| AGATAACTTCCAGGCAGCGT+TGG | 0.599900 | 3.1:+91469277 | MS.gene070005:CDS |
| AAGACATAACCATTGAACTA+GGG | 0.603476 | 3.1:+91469379 | MS.gene070005:CDS |
| CCAGAGCAAGCCATCATCAG+TGG | 0.606100 | 3.1:-91469249 | None:intergenic |
| TACATATCCTTGACCCGATG+AGG | 0.618531 | 3.1:-91469594 | None:intergenic |
| AGGAAATCATGCAGAGCCAG+AGG | 0.631315 | 3.1:+91469491 | MS.gene070005:CDS |
| ACCATTGAACTAGGGCAACA+CGG | 0.634091 | 3.1:+91469387 | MS.gene070005:CDS |
| TACATTCAGAGTCCTGACAT+AGG | 0.642781 | 3.1:+91469615 | MS.gene070005:CDS |
| ATAGTAGTAGTTTACCTGCG+AGG | 0.718032 | 3.1:-91468003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAATTCTCTATTTTTTTA+AGG | - | chr3.1:91469042-91469061 | None:intergenic | 10.0% |
| !! | CTGTAATATAACATTTATAT+AGG | - | chr3.1:91468255-91468274 | None:intergenic | 15.0% |
| !! | TCTATAAAAAAAAACACTAA+AGG | - | chr3.1:91468964-91468983 | None:intergenic | 15.0% |
| !! | AAAAACACTAAAGGTTTAAT+TGG | - | chr3.1:91468955-91468974 | None:intergenic | 20.0% |
| !! | ATATAGGCAAATTTGTATAA+GGG | - | chr3.1:91468239-91468258 | None:intergenic | 20.0% |
| !! | TATATAGGCAAATTTGTATA+AGG | - | chr3.1:91468240-91468259 | None:intergenic | 20.0% |
| !!! | AAAACATTCATTTTTGTAAG+AGG | + | chr3.1:91468507-91468526 | MS.gene070005:intron | 20.0% |
| !!! | AATAATGTACGATGATTTTT+CGG | - | chr3.1:91468906-91468925 | None:intergenic | 20.0% |
| !!! | GAACAGAAAAATTGATTTTT+TGG | - | chr3.1:91468829-91468848 | None:intergenic | 20.0% |
| !!! | TTTTTATAGGTGAATATTAG+TGG | + | chr3.1:91469075-91469094 | MS.gene070005:intron | 20.0% |
| ! | AAATTAAATGTGGAGAAATG+AGG | - | chr3.1:91468454-91468473 | None:intergenic | 25.0% |
| ! | ACTAATGGAAACAACTTATT+TGG | - | chr3.1:91468692-91468711 | None:intergenic | 25.0% |
| ! | AGAACTCACAAAATTAAATG+TGG | - | chr3.1:91468464-91468483 | None:intergenic | 25.0% |
| ! | CCTATAAAAAAAAACACTCA+AGG | - | chr3.1:91469065-91469084 | None:intergenic | 25.0% |
| ! | TAAAAGTTCCATTTGTTCAT+CGG | - | chr3.1:91467906-91467925 | None:intergenic | 25.0% |
| ! | TGTTATATTGTTGATGTCAT+TGG | + | chr3.1:91468309-91468328 | MS.gene070005:intron | 25.0% |
| ! | TTAAGATTAATACCTATGTC+AGG | - | chr3.1:91469630-91469649 | None:intergenic | 25.0% |
| ! | TTCAAATAAGTCTATCCAAA+CGG | + | chr3.1:91468753-91468772 | MS.gene070005:intron | 25.0% |
| !! | AGAAAGAGAATACATGATTT+TGG | + | chr3.1:91468188-91468207 | MS.gene070005:intron | 25.0% |
| !! | CCAATTATAAACATTAGTCT+CGG | - | chr3.1:91469421-91469440 | None:intergenic | 25.0% |
| !!! | ACACTTTTTGGAATTACTAA+TGG | - | chr3.1:91468707-91468726 | None:intergenic | 25.0% |
| !!! | CCTTGAGTGTTTTTTTTTAT+AGG | + | chr3.1:91469062-91469081 | MS.gene070005:intron | 25.0% |
| AAAGACATAACCATTGAACT+AGG | + | chr3.1:91469378-91469397 | MS.gene070005:CDS | 30.0% | |
| AAGACATAACCATTGAACTA+GGG | + | chr3.1:91469379-91469398 | MS.gene070005:CDS | 30.0% | |
| CCGAGACTAATGTTTATAAT+TGG | + | chr3.1:91469418-91469437 | MS.gene070005:CDS | 30.0% | |
| GACATTGCATAATTTATGCA+GGG | + | chr3.1:91468407-91468426 | MS.gene070005:intron | 30.0% | |
| GTCAATGTTATTGAATGTTC+AGG | + | chr3.1:91469198-91469217 | MS.gene070005:intron | 30.0% | |
| TATGTCTTTGATCTTCTGTT+TGG | - | chr3.1:91469367-91469386 | None:intergenic | 30.0% | |
| TCAAATAAGTCTATCCAAAC+GGG | + | chr3.1:91468754-91468773 | MS.gene070005:intron | 30.0% | |
| TCTATGAATACTCACTAACT+AGG | + | chr3.1:91469652-91469671 | MS.gene070005:CDS | 30.0% | |
| ! | TAAACACTTGTGACACTTTT+TGG | - | chr3.1:91468719-91468738 | None:intergenic | 30.0% |
| !! | TCACATGTTTTGTTCTCTTT+TGG | - | chr3.1:91469537-91469556 | None:intergenic | 30.0% |
| !!! | ATTGATTTTTTGGAATCGAG+AGG | - | chr3.1:91468819-91468838 | None:intergenic | 30.0% |
| AGAGAGCTTATGGAAATAAG+CGG | + | chr3.1:91468648-91468667 | MS.gene070005:intron | 35.0% | |
| AGTGTCACAAGTGTTTATGT+CGG | + | chr3.1:91468722-91468741 | MS.gene070005:intron | 35.0% | |
| CGACATTGCATAATTTATGC+AGG | + | chr3.1:91468406-91468425 | MS.gene070005:intron | 35.0% | |
| CTAGTCCTAAATAAGTAGCT+CGG | - | chr3.1:91469157-91469176 | None:intergenic | 35.0% | |
| CTTATTTCCATAAGCTCTCT+AGG | - | chr3.1:91468648-91468667 | None:intergenic | 35.0% | |
| TCTTTGATCTTCTGTTTGGT+GGG | - | chr3.1:91469363-91469382 | None:intergenic | 35.0% | |
| TTGAGAGTTTATCACCTCAT+CGG | + | chr3.1:91469580-91469599 | MS.gene070005:CDS | 35.0% | |
| ! | AGTGAGTGCAGGATATATTT+TGG | - | chr3.1:91468781-91468800 | None:intergenic | 35.0% |
| ! | TCAAGTATTTGAAGCTGGAT+AGG | - | chr3.1:91469312-91469331 | None:intergenic | 35.0% |
| !!! | TTTTTTGTCTAGTAGCCTAG+TGG | - | chr3.1:91468489-91468508 | None:intergenic | 35.0% |
| AAATTGGTTACAGTGAGTGC+AGG | - | chr3.1:91468792-91468811 | None:intergenic | 40.0% | |
| AAGCAATCATCTGTTACTGC+AGG | + | chr3.1:91469471-91469490 | MS.gene070005:CDS | 40.0% | |
| ACCAACCGAGCTACTTATTT+AGG | + | chr3.1:91469149-91469168 | MS.gene070005:intron | 40.0% | |
| ATAGTAGTAGTTTACCTGCG+AGG | - | chr3.1:91468006-91468025 | None:intergenic | 40.0% | |
| CTCAACAAGCTGATCAGAAA+TGG | - | chr3.1:91467954-91467973 | None:intergenic | 40.0% | |
| CTGGACATAAGATAACTTCC+AGG | + | chr3.1:91469268-91469287 | MS.gene070005:CDS | 40.0% | |
| GACAAGCGCTAAATCAATCA+AGG | - | chr3.1:91469181-91469200 | None:intergenic | 40.0% | |
| GGAATCGAGAGGACAAAAAT+TGG | - | chr3.1:91468808-91468827 | None:intergenic | 40.0% | |
| GTCTTTGATCTTCTGTTTGG+TGG | - | chr3.1:91469364-91469383 | None:intergenic | 40.0% | |
| TACATTCAGAGTCCTGACAT+AGG | + | chr3.1:91469615-91469634 | MS.gene070005:CDS | 40.0% | |
| TAGCTATCCTAGAGAGCTTA+TGG | + | chr3.1:91468638-91468657 | MS.gene070005:intron | 40.0% | |
| TCCTAAATAAGTAGCTCGGT+TGG | - | chr3.1:91469153-91469172 | None:intergenic | 40.0% | |
| TGAGAGTTTATCACCTCATC+GGG | + | chr3.1:91469581-91469600 | MS.gene070005:CDS | 40.0% | |
| TGCATAATTTATGCAGGGCT+GGG | + | chr3.1:91468412-91468431 | MS.gene070005:intron | 40.0% | |
| TTGCATAATTTATGCAGGGC+TGG | + | chr3.1:91468411-91468430 | MS.gene070005:intron | 40.0% | |
| ! | CGTATTTTCGATGAAGGCAA+TGG | + | chr3.1:91469333-91469352 | MS.gene070005:CDS | 40.0% |
| ! | CTTGAGCGTATTTTCGATGA+AGG | + | chr3.1:91469327-91469346 | MS.gene070005:CDS | 40.0% |
| ! | TACGCTCAAGTATTTGAAGC+TGG | - | chr3.1:91469317-91469336 | None:intergenic | 40.0% |
| !! | GGATATATTTTGGACCCGTT+TGG | - | chr3.1:91468771-91468790 | None:intergenic | 40.0% |
| !! | TTTTGTGAGTTCTAGCCACT+AGG | + | chr3.1:91468471-91468490 | MS.gene070005:intron | 40.0% |
| ACCATTGAACTAGGGCAACA+CGG | + | chr3.1:91469387-91469406 | MS.gene070005:CDS | 45.0% | |
| GAATGTTCAGGACTGAGACT+TGG | + | chr3.1:91469210-91469229 | MS.gene070005:intron | 45.0% | |
| GTACTGTGATCCACTGATGA+TGG | + | chr3.1:91469239-91469258 | MS.gene070005:CDS | 45.0% | |
| TACATATCCTTGACCCGATG+AGG | - | chr3.1:91469597-91469616 | None:intergenic | 45.0% | |
| TTGAACGAGCTCTTCTGTTC+TGG | - | chr3.1:91469446-91469465 | None:intergenic | 45.0% | |
| TTTATCACCTCATCGGGTCA+AGG | + | chr3.1:91469587-91469606 | MS.gene070005:CDS | 45.0% | |
| ! | ATGTGGAGAAATGAGGTGTC+CGG | - | chr3.1:91468447-91468466 | None:intergenic | 45.0% |
| ! | ATTTGAAGCTGGATAGGCGT+TGG | - | chr3.1:91469306-91469325 | None:intergenic | 45.0% |
| ACCGTGTTGCCCTAGTTCAA+TGG | - | chr3.1:91469391-91469410 | None:intergenic | 50.0% | |
| AGATAACTTCCAGGCAGCGT+TGG | + | chr3.1:91469277-91469296 | MS.gene070005:CDS | 50.0% | |
| AGGAAATCATGCAGAGCCAG+AGG | + | chr3.1:91469491-91469510 | MS.gene070005:CDS | 50.0% | |
| CTAGTACCTTCAGTGTCCCT+TGG | + | chr3.1:91469123-91469142 | MS.gene070005:intron | 50.0% | |
| GCCAACTGTGCTAAGCTCTA+GGG | - | chr3.1:91468384-91468403 | None:intergenic | 50.0% | |
| TCAACTTCTGTGTCTGCCTC+TGG | - | chr3.1:91469510-91469529 | None:intergenic | 50.0% | |
| TCCCTAGAGCTTAGCACAGT+TGG | + | chr3.1:91468380-91468399 | MS.gene070005:intron | 50.0% | |
| TGCCAACTGTGCTAAGCTCT+AGG | - | chr3.1:91468385-91468404 | None:intergenic | 50.0% | |
| ! | TGTGGAGAAATGAGGTGTCC+GGG | - | chr3.1:91468446-91468465 | None:intergenic | 50.0% |
| !! | CAAGGGACACTGAAGGTACT+AGG | - | chr3.1:91469125-91469144 | None:intergenic | 50.0% |
| CCAGAGCAAGCCATCATCAG+TGG | - | chr3.1:91469252-91469271 | None:intergenic | 55.0% | |
| ! | GTGGAGAAATGAGGTGTCCG+GGG | - | chr3.1:91468445-91468464 | None:intergenic | 55.0% |
| !! | CCACTGATGATGGCTTGCTC+TGG | + | chr3.1:91469249-91469268 | MS.gene070005:CDS | 55.0% |
| !! | TAGCTCGGTTGGTGAGCCAA+GGG | - | chr3.1:91469142-91469161 | None:intergenic | 55.0% |
| ACCACTCAACACGACCTCGC+AGG | + | chr3.1:91467989-91468008 | MS.gene070005:CDS | 60.0% | |
| ACCTGCGAGGTCGTGTTGAG+TGG | - | chr3.1:91467993-91468012 | None:intergenic | 60.0% | |
| GGTGAGCCAAGGGACACTGA+AGG | - | chr3.1:91469132-91469151 | None:intergenic | 60.0% | |
| !! | GTAGCTCGGTTGGTGAGCCA+AGG | - | chr3.1:91469143-91469162 | None:intergenic | 60.0% |
| CAGGGCTGGGTTTCGAACCC+CGG | + | chr3.1:91468425-91468444 | MS.gene070005:intron | 65.0% | |
| CGTTGGAGTCCAACGCTGCC+TGG | - | chr3.1:91469289-91469308 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 91467899 | 91469677 | 91467899 | ID=MS.gene070005 |
| chr3.1 | mRNA | 91467899 | 91469677 | 91467899 | ID=MS.gene070005.t1;Parent=MS.gene070005 |
| chr3.1 | exon | 91467899 | 91468010 | 91467899 | ID=MS.gene070005.t1.exon1;Parent=MS.gene070005.t1 |
| chr3.1 | CDS | 91467899 | 91468010 | 91467899 | ID=cds.MS.gene070005.t1;Parent=MS.gene070005.t1 |
| chr3.1 | exon | 91469220 | 91469677 | 91469220 | ID=MS.gene070005.t1.exon2;Parent=MS.gene070005.t1 |
| chr3.1 | CDS | 91469220 | 91469677 | 91469220 | ID=cds.MS.gene070005.t1;Parent=MS.gene070005.t1 |
| Gene Sequence |
| Protein sequence |
