AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene070813


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070813.t1 MTR_4g053880 97.967 492 10 0 1 492 1 492 0.0 1001
MS.gene070813.t1 MTR_2g086070 72.041 490 137 0 3 492 2 491 0.0 764
MS.gene070813.t1 MTR_2g086090 68.980 490 151 1 3 492 4 492 0.0 729
MS.gene070813.t1 MTR_4g053785 68.367 490 155 0 3 492 2 491 0.0 726
MS.gene070813.t1 MTR_4g053900 47.967 492 252 2 5 492 4 495 2.14e-170 489
MS.gene070813.t1 MTR_4g054820 48.871 487 241 6 10 489 6 491 6.11e-169 486
MS.gene070813.t1 MTR_5g072540 46.138 492 258 4 5 492 4 492 3.11e-165 476
MS.gene070813.t1 MTR_5g045330 46.247 493 246 3 3 492 2 478 5.93e-160 462
MS.gene070813.t1 MTR_1g054635 39.279 499 292 6 1 492 114 608 5.43e-123 372
MS.gene070813.t1 MTR_6g034620 45.429 361 160 5 135 492 1 327 2.56e-104 315
MS.gene070813.t1 MTR_4g054220 51.625 277 131 1 10 283 6 282 3.60e-101 305
MS.gene070813.t1 MTR_5g072550 44.444 252 134 3 244 492 1 249 1.20e-71 228
MS.gene070813.t1 MTR_6g039280 40.161 249 116 2 244 492 1 216 4.50e-51 173
MS.gene070813.t1 MTR_4g054240 40.566 212 123 3 283 492 20 230 2.59e-46 161
MS.gene070813.t1 MTR_6g034660 49.219 128 65 0 3 130 2 129 1.85e-36 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene070813.t1 AT4G33790 58.642 486 200 1 6 491 9 493 0.0 619
MS.gene070813.t1 AT3G44540 54.321 486 220 2 9 492 7 492 0.0 554
MS.gene070813.t1 AT5G22500 52.263 486 228 3 9 492 7 490 0.0 543
MS.gene070813.t1 AT3G44550 52.449 490 226 4 9 492 7 495 0.0 525
MS.gene070813.t1 AT3G44560 51.318 493 233 4 6 492 4 495 2.02e-175 502
MS.gene070813.t1 AT4G33790 58.530 381 157 1 111 491 1 380 2.25e-173 493
MS.gene070813.t1 AT3G44560 52.834 441 204 3 6 443 4 443 1.14e-159 461
MS.gene070813.t1 AT5G22500 54.592 392 175 2 9 399 7 396 3.12e-159 457
MS.gene070813.t1 AT3G44560 54.135 399 179 3 6 401 4 401 4.96e-148 429
MS.gene070813.t1 AT3G44550 51.421 387 182 3 111 492 1 386 2.11e-140 409
MS.gene070813.t1 AT3G44540 58.689 305 125 1 9 312 7 311 3.75e-130 380
MS.gene070813.t1 AT3G44540 58.689 305 125 1 9 312 7 311 3.75e-130 380
MS.gene070813.t1 AT5G22420 50.959 365 174 4 116 479 6 366 9.57e-130 381
MS.gene070813.t1 AT3G11980 40.361 498 277 8 7 492 124 613 2.00e-125 379
MS.gene070813.t1 AT5G22420 48.257 373 188 4 108 479 34 402 1.17e-122 365
MS.gene070813.t1 AT5G22420 62.000 50 19 0 9 58 7 56 4.51e-13 71.2
MS.gene070813.t1 AT5G22420 50.284 352 170 4 129 479 3 350 1.97e-122 362
MS.gene070813.t1 AT5G22420 50.284 352 170 4 129 479 3 350 1.97e-122 362
MS.gene070813.t1 AT5G22420 48.734 316 157 4 165 479 4 315 2.65e-103 312
MS.gene070813.t1 AT3G56700 36.646 483 285 7 7 488 77 539 4.42e-103 319
MS.gene070813.t1 AT5G22420 48.000 300 151 4 181 479 1 296 7.54e-96 292
MS.gene070813.t1 AT5G22420 48.000 300 151 4 181 479 1 296 7.54e-96 292
MS.gene070813.t1 AT3G56700 34.990 483 272 8 7 488 77 518 7.65e-92 289

Find 96 sgRNAs with CRISPR-Local

Find 331 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTTACTTGCTTCCTTTAA+AGG 0.098124 4.1:-44646313 MS.gene070813:intron
AGAAATTGAATAACCTTTAA+AGG 0.182202 4.1:+44646300 None:intergenic
CAACTTGGTGTTTCACTAAA+TGG 0.185971 4.1:-44647758 MS.gene070813:CDS
TAAAATTGCCATGAAGGATT+TGG 0.220004 4.1:-44647645 MS.gene070813:CDS
TGCGGTTGGTTGAACTTTAC+AGG 0.263042 4.1:-44645708 MS.gene070813:CDS
ATGCTTCCTTGCAGACTTAG+AGG 0.301520 4.1:-44647133 MS.gene070813:CDS
TTCATGAACATTCATATTCC+TGG 0.304377 4.1:-44645389 MS.gene070813:CDS
TTCCATTCCCAAATCCTTCA+TGG 0.309189 4.1:+44647637 None:intergenic
CCAAGAAAATTTCAATTTGA+AGG 0.310827 4.1:-44648898 MS.gene070813:CDS
TTTCCACCAATGGATCAATT+TGG 0.317863 4.1:-44651744 None:intergenic
GACAGTTTAATTGTTGCATA+TGG 0.320149 4.1:-44647171 MS.gene070813:CDS
TGCAACAATTAAACTGTCTA+TGG 0.329367 4.1:+44647176 None:intergenic
CCTTGAGCATAAGAATGTTT+TGG 0.340479 4.1:-44651706 MS.gene070813:CDS
GGTAACTTTGCCAACTTTGA+TGG 0.345674 4.1:+44646377 None:intergenic
AACGAATGTACATGTATCTT+TGG 0.350065 4.1:+44646331 None:intergenic
AAAATTGCCATGAAGGATTT+GGG 0.357512 4.1:-44647644 MS.gene070813:CDS
GCATTGGGTTTAAATACATT+TGG 0.366725 4.1:-44648659 MS.gene070813:CDS
AGATAAAGTTTCTTCACATT+TGG 0.367398 4.1:+44651507 None:intergenic
CAGAATATAGTTTCACTTGA+AGG 0.368930 4.1:+44645352 None:intergenic
CAAAGAACCTTTCCCTGGTT+GGG 0.394468 4.1:-44647336 MS.gene070813:CDS
CTTCCTTCCTTGTCAAAACA+TGG 0.404754 4.1:+44646402 None:intergenic
GTATAACTCTTGAAGTAGAT+TGG 0.417054 4.1:+44648872 None:intergenic
AGTTGGCAAAGTTACCGTAT+TGG 0.425068 4.1:-44646370 MS.gene070813:CDS
TAAGTGCTGGTAATGATTGT+AGG 0.428342 4.1:+44647359 None:intergenic
GTGCTTGTCCACGTATCAAC+AGG 0.430498 4.1:-44648590 MS.gene070813:intron
GAAGCAGATCCCTGCTGATA+TGG 0.433499 4.1:-44646568 MS.gene070813:intron
TTAATTGTTGCATATGGTAA+AGG 0.436186 4.1:-44647165 MS.gene070813:CDS
CAACCAACCGCATCACAGTA+TGG 0.442539 4.1:+44645719 None:intergenic
AAGGAATATTTGACAATGCC+AGG 0.451920 4.1:+44645371 None:intergenic
CCTTTCCCTGGTTGGGTCGA+AGG 0.461087 4.1:-44647329 MS.gene070813:CDS
AGGCCCTATGTGTTCTTCAA+TGG 0.461502 4.1:-44645688 MS.gene070813:CDS
ATCACGTGGGTTCATCTGTT+GGG 0.467939 4.1:-44646482 MS.gene070813:CDS
TTTGTAAAGACATATGTGTT+TGG 0.467992 4.1:+44647443 None:intergenic
TCAGAGCAAAATTATATGGT+TGG 0.482019 4.1:-44647466 MS.gene070813:intron
CTTACTCCTTCGACCCAACC+AGG 0.485945 4.1:+44647323 None:intergenic
TATCACGTGGGTTCATCTGT+TGG 0.489042 4.1:-44646483 MS.gene070813:CDS
CTGGTTGGGTCGAAGGAGTA+AGG 0.490574 4.1:-44647322 MS.gene070813:intron
AGTGAAACACCAAGTTGGTA+TGG 0.494139 4.1:+44647764 None:intergenic
TGAGGAAAAGAGAGTAGTTG+AGG 0.494819 4.1:-44647714 MS.gene070813:CDS
GCATTCACCACCATATCAGC+AGG 0.497234 4.1:+44646558 None:intergenic
GGATACTAAAATTGCCATGA+AGG 0.498148 4.1:-44647651 MS.gene070813:CDS
ACAAAGAACCTTTCCCTGGT+TGG 0.498389 4.1:-44647337 MS.gene070813:CDS
GAAAGGTTCTTTGTAAGTGC+TGG 0.505594 4.1:+44647346 None:intergenic
TGCCATGAAGGATTTGGGAA+TGG 0.510799 4.1:-44647639 MS.gene070813:CDS
AATGCTAGTGGGAACTATGA+AGG 0.527078 4.1:-44647408 MS.gene070813:CDS
TATGTCTTTACAAAGGCAAT+GGG 0.529172 4.1:-44647434 MS.gene070813:CDS
GGACTTGTTCAAATTGCTGA+AGG 0.533109 4.1:-44648988 MS.gene070813:CDS
ACAAGAGGGAGCTACTGAAA+AGG 0.533743 4.1:-44647672 MS.gene070813:CDS
GAAGGAAGAGCCATCAAAGT+TGG 0.538912 4.1:-44646387 MS.gene070813:CDS
ATACTGCCAAATTGATCCAT+TGG 0.540433 4.1:+44651738 None:intergenic
CTAAGACTCTCATATCTCAC+TGG 0.540860 4.1:+44646456 None:intergenic
TGCAGATATGATGTAGCATT+GGG 0.544440 4.1:-44648674 MS.gene070813:intron
AAAGAGAGTTACTCTTTGCA+AGG 0.545203 4.1:+44651664 None:intergenic
ACTTACAAAGAACCTTTCCC+TGG 0.545331 4.1:-44647341 MS.gene070813:CDS
CCAAAACATTCTTATGCTCA+AGG 0.551300 4.1:+44651706 None:intergenic
AAGACAAAGTGGAGTAGAGA+TGG 0.553343 4.1:-44645456 MS.gene070813:CDS
ATGCAGATATGATGTAGCAT+TGG 0.559269 4.1:-44648675 MS.gene070813:intron
ATTGAACATGCTTCAACAAG+AGG 0.567383 4.1:-44647687 MS.gene070813:CDS
GAATGCAATGCTAGTGGCCA+TGG 0.569856 4.1:-44646541 MS.gene070813:CDS
CAAATAGCAGCAAGACAAAG+TGG 0.573597 4.1:-44645467 MS.gene070813:CDS
CAACAACTAACTTTGATGAA+AGG 0.576712 4.1:-44648818 MS.gene070813:intron
ATATGTCTTTACAAAGGCAA+TGG 0.586877 4.1:-44647435 MS.gene070813:CDS
ACGCCATTGAAGAACACATA+GGG 0.595025 4.1:+44645685 None:intergenic
GAGAGGAGGACTGATAGTAG+AGG 0.600345 4.1:-44647789 MS.gene070813:CDS
GGCAATGGGAGAAATGCTAG+TGG 0.600756 4.1:-44647420 MS.gene070813:CDS
CATTTAGTGAAACACCAAGT+TGG 0.601093 4.1:+44647759 None:intergenic
TGAAGGATTTGGGAATGGAA+AGG 0.604642 4.1:-44647634 MS.gene070813:intron
CCTTCGACCCAACCAGGGAA+AGG 0.605631 4.1:+44647329 None:intergenic
TTAAATGTAGCATACGTATG+TGG 0.610970 4.1:-44647815 MS.gene070813:intron
AAACTGCCTCTAAGTCTGCA+AGG 0.617704 4.1:+44647127 None:intergenic
AAATTGCTGAAGGAAAATCA+TGG 0.619305 4.1:-44648978 MS.gene070813:CDS
GTTTCACTAAATGGAGTGCA+AGG 0.619534 4.1:-44647749 MS.gene070813:CDS
AATACAAACCTGTTGATACG+TGG 0.632502 4.1:+44648582 None:intergenic
TGTAGGTCTCACAATAACAA+TGG 0.633502 4.1:+44647376 None:intergenic
TTACTCCTTCGACCCAACCA+GGG 0.637146 4.1:+44647324 None:intergenic
GCATACGTATGTGGAGAGAG+AGG 0.637651 4.1:-44647806 MS.gene070813:CDS
CACGCCATTGAAGAACACAT+AGG 0.641905 4.1:+44645684 None:intergenic
TGATGATAGCATATATCACG+TGG 0.642564 4.1:-44646496 MS.gene070813:CDS
TTGAACATGCTTCAACAAGA+GGG 0.645462 4.1:-44647686 MS.gene070813:CDS
GGTCCATACTGTGATGCGGT+TGG 0.646323 4.1:-44645722 MS.gene070813:CDS
CACTAGAAGACTGCACAATG+AGG 0.647867 4.1:-44651454 MS.gene070813:intron
AATATGTACTTTGAAAATAG+CGG 0.651662 4.1:+44645761 None:intergenic
GCAAGGACTAGACATTGATG+AGG 0.656577 4.1:-44647732 MS.gene070813:CDS
TTGATTTGCATGACTCACCA+TGG 0.657844 4.1:+44646524 None:intergenic
GTAGAGGATCCATACCAACT+TGG 0.659399 4.1:-44647773 MS.gene070813:CDS
TACGTATGTGGAGAGAGAGG+AGG 0.668461 4.1:-44647803 MS.gene070813:CDS
AAACACATATGTCTTTACAA+AGG 0.671076 4.1:-44647441 MS.gene070813:CDS
GCAGATCCCTGCTGATATGG+TGG 0.671477 4.1:-44646565 MS.gene070813:intron
AAAAGTGACTCTAGTGCCTG+GGG 0.681356 4.1:-44648928 MS.gene070813:CDS
GCAATGGGAGAAATGCTAGT+GGG 0.681775 4.1:-44647419 MS.gene070813:CDS
TGATATATGCTATCATCACA+AGG 0.681859 4.1:+44646501 None:intergenic
CATTCACCACCATATCAGCA+GGG 0.685104 4.1:+44646559 None:intergenic
GGAAGGTCCATACTGTGATG+CGG 0.690975 4.1:-44645726 MS.gene070813:CDS
GGTGGTGAATGCAATGCTAG+TGG 0.712141 4.1:-44646547 MS.gene070813:CDS
GATGATAGCATATATCACGT+GGG 0.729775 4.1:-44646495 MS.gene070813:CDS
ATACGTGGACAAGCACCCTG+AGG 0.756197 4.1:+44648597 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAAATATATATTT+AGG + chr4.1:44647904-44647923 None:intergenic 0.0%
!! TATATATATATATATAATAT+TGG - chr4.1:44648630-44648649 MS.gene070813:CDS 0.0%
!! AAAAAAATTATTTGTGTATA+AGG - chr4.1:44645727-44645746 MS.gene070813:CDS 10.0%
!! AAATATCTTGAATAATATAT+TGG + chr4.1:44646843-44646862 None:intergenic 10.0%
!! ATTAACTACAATAAAAAATT+TGG + chr4.1:44649814-44649833 None:intergenic 10.0%
!! TAAAAAATTTCTAAATTTGA+TGG + chr4.1:44648873-44648892 None:intergenic 10.0%
!! TGTATATTAATAGAAAAATA+CGG + chr4.1:44646740-44646759 None:intergenic 10.0%
!!! AAAAATTAAACTTGTTTTTT+AGG - chr4.1:44651154-44651173 MS.gene070813:intron 10.0%
!!! AAAATTGTATATTTTCAAAT+GGG + chr4.1:44646700-44646719 None:intergenic 10.0%
!!! TAGATTTTTATGTAATTTTA+CGG + chr4.1:44646051-44646070 None:intergenic 10.0%
!!! TATACACAAATAATTTTTTT+TGG + chr4.1:44645727-44645746 None:intergenic 10.0%
!!! TTTTAGTTAAATATGTTAAT+TGG + chr4.1:44646595-44646614 None:intergenic 10.0%
!! AAATAATTATGTGTTAACTT+TGG + chr4.1:44650887-44650906 None:intergenic 15.0%
!! AAATCACAAAAATATCTTAT+CGG - chr4.1:44646222-44646241 MS.gene070813:intron 15.0%
!! AAGTTATCTTAAATATAAGA+CGG - chr4.1:44647510-44647529 MS.gene070813:intron 15.0%
!! AATTCATGAAATTAATTATG+AGG - chr4.1:44647372-44647391 MS.gene070813:CDS 15.0%
!! ACATAACTAAATGTATAATT+AGG - chr4.1:44650470-44650489 MS.gene070813:intron 15.0%
!! AGAACCAATAAAATAAAATA+TGG - chr4.1:44649041-44649060 MS.gene070813:intron 15.0%
!! AGGTATTTAAAAAATTAACA+TGG + chr4.1:44650251-44650270 None:intergenic 15.0%
!! ATCTTCTTGAATTAAAAAAA+AGG - chr4.1:44650417-44650436 MS.gene070813:intron 15.0%
!! GTTTATTAAATTTGTGTATA+AGG - chr4.1:44645695-44645714 MS.gene070813:CDS 15.0%
!! TCTTCTTGAATTAAAAAAAA+GGG - chr4.1:44650418-44650437 MS.gene070813:intron 15.0%
!! TGAATGAAAATTATAATTAG+TGG + chr4.1:44647448-44647467 None:intergenic 15.0%
!! TTAATTAATTTCAATAAGCA+TGG + chr4.1:44649246-44649265 None:intergenic 15.0%
!!! AACTTTTATGATGTAAATTT+AGG - chr4.1:44646528-44646547 MS.gene070813:CDS 15.0%
!!! AATTTGATGGATATAAATAT+AGG + chr4.1:44648860-44648879 None:intergenic 15.0%
!!! ATATTTTATCCAAAGAATTT+GGG - chr4.1:44650157-44650176 MS.gene070813:intron 15.0%
!!! ATTAATTTGTGTTTTATAAC+AGG - chr4.1:44651287-44651306 MS.gene070813:intron 15.0%
!!! CAAAATTGTATATTTTCAAA+TGG + chr4.1:44646701-44646720 None:intergenic 15.0%
!!! CTATTATTCATTTCAAATTT+TGG - chr4.1:44651494-44651513 MS.gene070813:CDS 15.0%
!!! GTTATATTAGTCTTTTTTTA+AGG - chr4.1:44648564-44648583 MS.gene070813:intron 15.0%
!!! TAATTAAATCAATTTTGTCT+AGG + chr4.1:44650496-44650515 None:intergenic 15.0%
!!! TATTTTATTTTATTGGTTCT+AGG + chr4.1:44649041-44649060 None:intergenic 15.0%
!!! TTAATTTGTGTTTTATAACA+GGG - chr4.1:44651288-44651307 MS.gene070813:intron 15.0%
!!! TTTAGTTTATCTTCTTTAAA+AGG - chr4.1:44650014-44650033 MS.gene070813:intron 15.0%
!!! TTTGTTGTTAATTTGTTTAT+TGG + chr4.1:44649579-44649598 None:intergenic 15.0%
!!! TTTTTTCTAATACACAATTT+TGG + chr4.1:44650445-44650464 None:intergenic 15.0%
!! AATTATTTGTGTATAAGGTA+CGG - chr4.1:44645732-44645751 MS.gene070813:CDS 20.0%
!! AGAAATTGAATAACCTTTAA+AGG + chr4.1:44650802-44650821 None:intergenic 20.0%
!! ATAAAAAGTGATCAAAATTG+TGG + chr4.1:44650092-44650111 None:intergenic 20.0%
!! ATTAAAGGAACACATAATAA+AGG + chr4.1:44649849-44649868 None:intergenic 20.0%
!! CCAATAAAATAAAATATGGT+AGG - chr4.1:44649045-44649064 MS.gene070813:intron 20.0%
!! GTAATTAATGATGATTATGT+TGG - chr4.1:44645860-44645879 MS.gene070813:intron 20.0%
!!! AAAACTCTTAACATTCTTTT+TGG - chr4.1:44646023-44646042 MS.gene070813:intron 20.0%
!!! AATATGTACTTTGAAAATAG+CGG + chr4.1:44651341-44651360 None:intergenic 20.0%
!!! AATGACTACATTCAATTTTT+TGG - chr4.1:44646981-44647000 MS.gene070813:intron 20.0%
!!! ACTTAATAAATTGAGAGTTT+TGG + chr4.1:44645830-44645849 None:intergenic 20.0%
!!! ATTTTCAGAGCAAAATTATA+TGG - chr4.1:44649629-44649648 MS.gene070813:intron 20.0%
!!! CAAGTTTAATTTTTTTTCGT+AGG + chr4.1:44651148-44651167 None:intergenic 20.0%
!!! CATGCAATTTATTTTAGTAA+TGG + chr4.1:44646395-44646414 None:intergenic 20.0%
!!! CCTACCATATTTTATTTTAT+TGG + chr4.1:44649048-44649067 None:intergenic 20.0%
!!! CTTCAAATTGAAATTTTCTT+GGG + chr4.1:44648203-44648222 None:intergenic 20.0%
!!! CTTTTTGAGAATATCATAAT+TGG - chr4.1:44647413-44647432 MS.gene070813:CDS 20.0%
!!! GATATTTTATCCAAAGAATT+TGG - chr4.1:44650156-44650175 MS.gene070813:intron 20.0%
!!! TAATTTGTGTTTTATAACAG+GGG - chr4.1:44651289-44651308 MS.gene070813:intron 20.0%
!!! TTTTCCTCAATAAAAAAAGT+TGG - chr4.1:44647540-44647559 MS.gene070813:intron 20.0%
! AAAACTTTACCCAAATTCTT+TGG + chr4.1:44650169-44650188 None:intergenic 25.0%
! AAAGATGCATATTGGAATTT+AGG + chr4.1:44648735-44648754 None:intergenic 25.0%
! AAGAAGAAAAAAAACCCTAA+TGG - chr4.1:44646558-44646577 MS.gene070813:CDS 25.0%
! AATAATGCATATATATGCAG+GGG - chr4.1:44647595-44647614 MS.gene070813:intron 25.0%
! AATGATTATGACATATAGGT+AGG + chr4.1:44650331-44650350 None:intergenic 25.0%
! AATTTAATATGCTAAGATCC+AGG + chr4.1:44651095-44651114 None:intergenic 25.0%
! AGATAAAGTTTCTTCACATT+TGG + chr4.1:44645595-44645614 None:intergenic 25.0%
! AGGTATGTATAGACATTAAA+AGG - chr4.1:44645665-44645684 MS.gene070813:intron 25.0%
! ATCCTAAAGTATATTTGTGA+TGG - chr4.1:44647933-44647952 MS.gene070813:intron 25.0%
! ATGAATTAGATTAGACAAGT+GGG + chr4.1:44647359-44647378 None:intergenic 25.0%
! ATGAGAGGAGTAAAAAAAAA+AGG + chr4.1:44645993-44646012 None:intergenic 25.0%
! ATGTATCGAAATTAAACTCT+AGG - chr4.1:44650945-44650964 MS.gene070813:intron 25.0%
! CAAAAATATGAAGACCAAAA+GGG + chr4.1:44650063-44650082 None:intergenic 25.0%
! CAAAAATTGTATTAACCTCA+GGG - chr4.1:44648487-44648506 MS.gene070813:intron 25.0%
! CATTTAGTATCAATCAATGT+AGG - chr4.1:44649216-44649235 MS.gene070813:intron 25.0%
! CCAAGAAAATTTCAATTTGA+AGG - chr4.1:44648201-44648220 MS.gene070813:intron 25.0%
! GAATAATGCATATATATGCA+GGG - chr4.1:44647594-44647613 MS.gene070813:intron 25.0%
! GACAAATGATTATGACATAT+AGG + chr4.1:44650335-44650354 None:intergenic 25.0%
! GTAAGTATTTAAAAGTGGTA+GGG - chr4.1:44651063-44651082 MS.gene070813:intron 25.0%
! GTCAAAAAGTTGTTAGAAAA+TGG - chr4.1:44647176-44647195 MS.gene070813:CDS 25.0%
! TAAGATTAGTACACAAAAGA+CGG + chr4.1:44646480-44646499 None:intergenic 25.0%
! TACTTGACCAAAAAAAAAGT+TGG - chr4.1:44647683-44647702 MS.gene070813:CDS 25.0%
! TCAAAAATATGAAGACCAAA+AGG + chr4.1:44650064-44650083 None:intergenic 25.0%
! TCAATTGTGTCAAGTATTAT+GGG - chr4.1:44646898-44646917 MS.gene070813:intron 25.0%
! TGCATCTTAAGATAGTTATT+AGG - chr4.1:44648957-44648976 MS.gene070813:CDS 25.0%
! TGGAAAAATAGAAGTAATTG+AGG + chr4.1:44650828-44650847 None:intergenic 25.0%
! TGTAGCAGTCTATTTATTAT+AGG - chr4.1:44646955-44646974 MS.gene070813:intron 25.0%
! TGTATCGAAATTAAACTCTA+GGG - chr4.1:44650946-44650965 MS.gene070813:intron 25.0%
! TTAATAGATAACGAGTACAA+CGG + chr4.1:44650981-44651000 None:intergenic 25.0%
! TTAATTGTTGCATATGGTAA+AGG - chr4.1:44649934-44649953 MS.gene070813:intron 25.0%
! TTTGAAAAGCTCTCATTTAT+CGG - chr4.1:44648676-44648695 MS.gene070813:intron 25.0%
!! CCTTCAAATTGAAATTTTCT+TGG + chr4.1:44648204-44648223 None:intergenic 25.0%
!! GCTATTCATATTTTCCAATA+CGG + chr4.1:44650746-44650765 None:intergenic 25.0%
!! GTGTATATTTGTAGTTTTTG+TGG - chr4.1:44645549-44645568 MS.gene070813:intron 25.0%
!! GTTTAATTTCGATACATTGT+CGG + chr4.1:44650942-44650961 None:intergenic 25.0%
!! TTGATTTTCTCTCTTTTGAT+TGG - chr4.1:44647083-44647102 MS.gene070813:intron 25.0%
!!! ACTTCCAACTTTTTTTATTG+AGG + chr4.1:44647547-44647566 None:intergenic 25.0%
!!! AGATGAATTTTTCAATTACG+TGG - chr4.1:44648896-44648915 MS.gene070813:CDS 25.0%
!!! AGTTGATATTATTACCCTTT+TGG - chr4.1:44650046-44650065 MS.gene070813:intron 25.0%
!!! GAACGGTAACAATTTTTTAT+AGG + chr4.1:44647282-44647301 None:intergenic 25.0%
!!! GCATTTTCCAACTTTTTTTT+TGG + chr4.1:44647693-44647712 None:intergenic 25.0%
!!! GTTTTCTGTTAGTTTATTGT+AGG + chr4.1:44650229-44650248 None:intergenic 25.0%
!!! TTGGGTAAAGTTTTGATAAT+AGG - chr4.1:44650175-44650194 MS.gene070813:intron 25.0%
AAAATAGCAGTTTAAACGGT+TGG - chr4.1:44647311-44647330 MS.gene070813:intron 30.0%
AAAATTGCCATGAAGGATTT+GGG - chr4.1:44649455-44649474 MS.gene070813:intron 30.0%
AAATACGGTCAAAGTAAGTT+AGG + chr4.1:44646725-44646744 None:intergenic 30.0%
AAATTGCTGAAGGAAAATCA+TGG - chr4.1:44648121-44648140 MS.gene070813:intron 30.0%
AACGAATGTACATGTATCTT+TGG + chr4.1:44650771-44650790 None:intergenic 30.0%
AGAATATCATAATTGGTGAG+TGG - chr4.1:44647420-44647439 MS.gene070813:CDS 30.0%
ATATGTCTTTACAAAGGCAA+TGG - chr4.1:44649664-44649683 MS.gene070813:intron 30.0%
CAACAACTAACTTTGATGAA+AGG - chr4.1:44648281-44648300 MS.gene070813:intron 30.0%
CACCATCACAAATATACTTT+AGG + chr4.1:44647938-44647957 None:intergenic 30.0%
CATGAATTAGATTAGACAAG+TGG + chr4.1:44647360-44647379 None:intergenic 30.0%
CCAAAAATTGTATTAACCTC+AGG - chr4.1:44648486-44648505 MS.gene070813:intron 30.0%
CGTAAGTATTTAAAAGTGGT+AGG - chr4.1:44651062-44651081 MS.gene070813:intron 30.0%
CTTGTCTATTACTCCATTTA+AGG + chr4.1:44649136-44649155 None:intergenic 30.0%
GAATACCACAAAAGTTTAGT+TGG - chr4.1:44649177-44649196 MS.gene070813:intron 30.0%
GACAGTTTAATTGTTGCATA+TGG - chr4.1:44649928-44649947 MS.gene070813:intron 30.0%
GCAACGTAAGTATTTAAAAG+TGG - chr4.1:44651058-44651077 MS.gene070813:intron 30.0%
GCATTGGGTTTAAATACATT+TGG - chr4.1:44648440-44648459 MS.gene070813:intron 30.0%
GGAATAATGCATATATATGC+AGG - chr4.1:44647593-44647612 MS.gene070813:intron 30.0%
GTACTATAAGTGAGTAAAGA+TGG - chr4.1:44645933-44645952 MS.gene070813:intron 30.0%
GTATAACTCTTGAAGTAGAT+TGG + chr4.1:44648230-44648249 None:intergenic 30.0%
GTCAATTGTGTCAAGTATTA+TGG - chr4.1:44646897-44646916 MS.gene070813:intron 30.0%
GTGATATTTGTACAACTCTT+TGG - chr4.1:44647041-44647060 MS.gene070813:intron 30.0%
TAAAATTGCCATGAAGGATT+TGG - chr4.1:44649454-44649473 MS.gene070813:intron 30.0%
TAATAGATAACGAGTACAAC+GGG + chr4.1:44650980-44650999 None:intergenic 30.0%
TATGTCTTTACAAAGGCAAT+GGG - chr4.1:44649665-44649684 MS.gene070813:intron 30.0%
TCACAAAAATATCTTATCGG+TGG - chr4.1:44646225-44646244 MS.gene070813:intron 30.0%
TCACCTTAAAAGTGAATAAG+TGG + chr4.1:44647644-44647663 None:intergenic 30.0%
TCAGAGCAAAATTATATGGT+TGG - chr4.1:44649633-44649652 MS.gene070813:intron 30.0%
TGACCCAAAAATGATTAACT+GGG - chr4.1:44651679-44651698 MS.gene070813:CDS 30.0%
TGATATATGCTATCATCACA+AGG + chr4.1:44650601-44650620 None:intergenic 30.0%
TGCAACAATTAAACTGTCTA+TGG + chr4.1:44649926-44649945 None:intergenic 30.0%
TGTGTCTTGAAAAATTCTTG+AGG + chr4.1:44647735-44647754 None:intergenic 30.0%
TTAAATGTAGCATACGTATG+TGG - chr4.1:44649284-44649303 MS.gene070813:intron 30.0%
TTATGTTGGTATCTTAAGTG+TGG - chr4.1:44645874-44645893 MS.gene070813:intron 30.0%
TTCATGAACATTCATATTCC+TGG - chr4.1:44651710-44651729 MS.gene070813:CDS 30.0%
TTGACCCAAAAATGATTAAC+TGG - chr4.1:44651678-44651697 MS.gene070813:CDS 30.0%
TTTATTGTAGGAGATGATGT+TGG + chr4.1:44650217-44650236 None:intergenic 30.0%
TTTCGTAGGTACAATTCATA+CGG + chr4.1:44651134-44651153 None:intergenic 30.0%
! AGAGCTTTTCAAACAATCTT+GGG + chr4.1:44648669-44648688 None:intergenic 30.0%
! ATAGTGGAAAAGATGCATAT+TGG + chr4.1:44648743-44648762 None:intergenic 30.0%
! ATATTTTACTTGCACGTCAT+TGG - chr4.1:44650361-44650380 MS.gene070813:intron 30.0%
! ATCGGAAAGATAGTTTTTGA+TGG - chr4.1:44648694-44648713 MS.gene070813:intron 30.0%
! ATGCATTGACATGCTTAATA+AGG - chr4.1:44646875-44646894 MS.gene070813:intron 30.0%
! CCTGAGGTTAATACAATTTT+TGG + chr4.1:44648489-44648508 None:intergenic 30.0%
! CTACAGCTTCAGATATTTTA+CGG - chr4.1:44650669-44650688 MS.gene070813:intron 30.0%
! GAAAAATAGTTTGTCAGAAG+TGG + chr4.1:44648984-44649003 None:intergenic 30.0%
! GAATGTTAAGAGTTTTCTCT+TGG + chr4.1:44646019-44646038 None:intergenic 30.0%
! TCATATGTAGATTTTGCGAA+AGG - chr4.1:44648090-44648109 MS.gene070813:intron 30.0%
! TCTTTTCCACTATAATCTCT+CGG - chr4.1:44648750-44648769 MS.gene070813:intron 30.0%
!! ACTCCACTTATTCACTTTTA+AGG - chr4.1:44647638-44647657 MS.gene070813:CDS 30.0%
!! AGTCAATTGTTTTGCATGAA+TGG + chr4.1:44650848-44650867 None:intergenic 30.0%
!! CTATTTTTCGCAATTCAATG+TGG - chr4.1:44648995-44649014 MS.gene070813:CDS 30.0%
!! GAAATTAAACTCTAGGGTTT+GGG - chr4.1:44650952-44650971 MS.gene070813:intron 30.0%
!! TAGTTGGTGAACTTAATATG+TGG - chr4.1:44649193-44649212 MS.gene070813:intron 30.0%
!! TTATCTTCTTTTGAGAGCTA+CGG - chr4.1:44645609-44645628 MS.gene070813:intron 30.0%
!! TTTTTGAGCTTGAGCAATAT+AGG - chr4.1:44648810-44648829 MS.gene070813:intron 30.0%
!!! AACGTCACACTTTTTTGAAA+TGG - chr4.1:44650387-44650406 MS.gene070813:intron 30.0%
!!! ACCGTTTAAACTGCTATTTT+CGG + chr4.1:44647311-44647330 None:intergenic 30.0%
!!! ACGTCACACTTTTTTGAAAT+GGG - chr4.1:44650388-44650407 MS.gene070813:intron 30.0%
!!! AGAATTTTTCAAGACACATG+TGG - chr4.1:44647737-44647756 MS.gene070813:CDS 30.0%
!!! ATATTTTGATATCAGCAGGA+AGG - chr4.1:44651356-44651375 MS.gene070813:intron 30.0%
!!! CATAAGAATGTTTTGGTACT+TGG - chr4.1:44645400-44645419 MS.gene070813:CDS 30.0%
!!! GTACATATTTTGATATCAGC+AGG - chr4.1:44651352-44651371 MS.gene070813:intron 30.0%
AAACACAAGGACAAAAAGAG+AGG + chr4.1:44645780-44645799 None:intergenic 35.0%
AAAGAGAGTTACTCTTTGCA+AGG + chr4.1:44645438-44645457 None:intergenic 35.0%
AACACAAGGACAAAAAGAGA+GGG + chr4.1:44645779-44645798 None:intergenic 35.0%
AAGGAATATTTGACAATGCC+AGG + chr4.1:44651731-44651750 None:intergenic 35.0%
AATACAAACCTGTTGATACG+TGG + chr4.1:44648520-44648539 None:intergenic 35.0%
ACTATAATCTCTCGGATTCT+AGG - chr4.1:44648758-44648777 MS.gene070813:intron 35.0%
ACTGCAACACATACCTTAAA+TGG - chr4.1:44649120-44649139 MS.gene070813:intron 35.0%
AGGTATGTGTTGCAGTATTA+TGG + chr4.1:44649116-44649135 None:intergenic 35.0%
ATGCAGATATGATGTAGCAT+TGG - chr4.1:44648424-44648443 MS.gene070813:intron 35.0%
ATGTCTCATGAAGAAACACA+AGG + chr4.1:44645793-44645812 None:intergenic 35.0%
ATTGAACATGCTTCAACAAG+AGG - chr4.1:44649412-44649431 MS.gene070813:intron 35.0%
CATTTAGTGAAACACCAAGT+TGG + chr4.1:44649343-44649362 None:intergenic 35.0%
CCAAAACATTCTTATGCTCA+AGG + chr4.1:44645396-44645415 None:intergenic 35.0%
CCCGAAAATAGCAGTTTAAA+CGG - chr4.1:44647307-44647326 MS.gene070813:intron 35.0%
CTACAAGTGTACAAGAAAAG+TGG - chr4.1:44648933-44648952 MS.gene070813:CDS 35.0%
GATGATAGCATATATCACGT+GGG - chr4.1:44650604-44650623 MS.gene070813:intron 35.0%
GATTATGACATATAGGTAGG+TGG + chr4.1:44650328-44650347 None:intergenic 35.0%
GGATACTAAAATTGCCATGA+AGG - chr4.1:44649448-44649467 MS.gene070813:intron 35.0%
TAGAATCCGAGAGATTATAG+TGG + chr4.1:44648759-44648778 None:intergenic 35.0%
TAGGTGGATGGGTATATTAT+AGG + chr4.1:44650312-44650331 None:intergenic 35.0%
TCATGCATATGCTCTTTCTT+TGG - chr4.1:44646312-44646331 MS.gene070813:intron 35.0%
TCCAAATCTACTGTTGTTGT+CGG - chr4.1:44646254-44646273 MS.gene070813:intron 35.0%
TCGTTACTTGCTTCCTTTAA+AGG - chr4.1:44650786-44650805 MS.gene070813:intron 35.0%
TGATGATAGCATATATCACG+TGG - chr4.1:44650603-44650622 MS.gene070813:intron 35.0%
TGCAGATATGATGTAGCATT+GGG - chr4.1:44648425-44648444 MS.gene070813:intron 35.0%
TGTAGGTCTCACAATAACAA+TGG + chr4.1:44649726-44649745 None:intergenic 35.0%
TTATGGTCATATGTTGAGCT+TGG + chr4.1:44649099-44649118 None:intergenic 35.0%
TTCAAATGGGTCATCTATTG+CGG + chr4.1:44646687-44646706 None:intergenic 35.0%
TTGAACATGCTTCAACAAGA+GGG - chr4.1:44649413-44649432 MS.gene070813:intron 35.0%
TTGTGTCAAGTATTATGGGA+TGG - chr4.1:44646902-44646921 MS.gene070813:intron 35.0%
! ATGCTCTTTCTTTGGTAACA+TGG - chr4.1:44646320-44646339 MS.gene070813:CDS 35.0%
! ATGGAGGGAGTAACATTTTA+AGG - chr4.1:44646921-44646940 MS.gene070813:intron 35.0%
! CCTTGAGCATAAGAATGTTT+TGG - chr4.1:44645393-44645412 MS.gene070813:CDS 35.0%
! GAGAGCTTTTCAAACAATCT+TGG + chr4.1:44648670-44648689 None:intergenic 35.0%
! GTTCACCAACTAAACTTTTG+TGG + chr4.1:44649185-44649204 None:intergenic 35.0%
! TCCTCCCAGTTAATCATTTT+TGG + chr4.1:44651686-44651705 None:intergenic 35.0%
!! CAACTTGGTGTTTCACTAAA+TGG - chr4.1:44649341-44649360 MS.gene070813:intron 35.0%
!! CCTCCCAGTTAATCATTTTT+GGG + chr4.1:44651685-44651704 None:intergenic 35.0%
!! CGAAATTAAACTCTAGGGTT+TGG - chr4.1:44650951-44650970 MS.gene070813:intron 35.0%
!! GTACACAAAAGACGGATTTT+TGG + chr4.1:44646472-44646491 None:intergenic 35.0%
!! TAAGTGCTGGTAATGATTGT+AGG + chr4.1:44649743-44649762 None:intergenic 35.0%
!! TGGTGTCTTTTTCACCATTA+GGG + chr4.1:44646575-44646594 None:intergenic 35.0%
!! TTGGTGTCTTTTTCACCATT+AGG + chr4.1:44646576-44646595 None:intergenic 35.0%
!! TTTTTGGTCAAGTAGCCTAT+CGG + chr4.1:44647677-44647696 None:intergenic 35.0%
!!! AAACCATGTTTTGACAAGGA+AGG - chr4.1:44650694-44650713 MS.gene070813:intron 35.0%
!!! CCGTTTAAACTGCTATTTTC+GGG + chr4.1:44647310-44647329 None:intergenic 35.0%
!!! CGTCACACTTTTTTGAAATG+GGG - chr4.1:44650389-44650408 MS.gene070813:intron 35.0%
AAAAAGTGACTCTAGTGCCT+GGG - chr4.1:44648170-44648189 MS.gene070813:intron 40.0%
AAGACAAAGTGGAGTAGAGA+TGG - chr4.1:44651643-44651662 MS.gene070813:intron 40.0%
AATGCTAGTGGGAACTATGA+AGG - chr4.1:44649691-44649710 MS.gene070813:intron 40.0%
ACCGACAACAACAGTAGATT+TGG + chr4.1:44646258-44646277 None:intergenic 40.0%
ACGCCATTGAAGAACACATA+GGG + chr4.1:44651417-44651436 None:intergenic 40.0%
ACTTACAAAGAACCTTTCCC+TGG - chr4.1:44649758-44649777 MS.gene070813:intron 40.0%
AGTTGGCAAAGTTACCGTAT+TGG - chr4.1:44650729-44650748 MS.gene070813:intron 40.0%
ATGACATATAGGTAGGTGGA+TGG + chr4.1:44650324-44650343 None:intergenic 40.0%
ATGCATATATATGCAGGGGT+CGG - chr4.1:44647599-44647618 MS.gene070813:intron 40.0%
CAAATAGCAGCAAGACAAAG+TGG - chr4.1:44651632-44651651 MS.gene070813:intron 40.0%
CCCAAAAATGATTAACTGGG+AGG - chr4.1:44651682-44651701 MS.gene070813:CDS 40.0%
CTAAGACTCTCATATCTCAC+TGG + chr4.1:44650646-44650665 None:intergenic 40.0%
CTCACCAATGTCATGTAGAA+CGG - chr4.1:44646285-44646304 MS.gene070813:intron 40.0%
CTTCCTTCCTTGTCAAAACA+TGG + chr4.1:44650700-44650719 None:intergenic 40.0%
GAAAGGTTCTTTGTAAGTGC+TGG + chr4.1:44649756-44649775 None:intergenic 40.0%
GAGGTGGGTGTGAAAATTAA+TGG + chr4.1:44647985-44648004 None:intergenic 40.0%
GCACTATTTGCCACAATTCA+AGG + chr4.1:44647816-44647835 None:intergenic 40.0%
GGCAAATAGTGCATTGTGAT+TGG - chr4.1:44647824-44647843 MS.gene070813:intron 40.0%
GGTAAATATCTCACGTTGGA+TGG - chr4.1:44645895-44645914 MS.gene070813:intron 40.0%
GGTAACTTTGCCAACTTTGA+TGG + chr4.1:44650725-44650744 None:intergenic 40.0%
GGTTAATCTTACGTGCTAGT+AGG + chr4.1:44649071-44649090 None:intergenic 40.0%
GTCAAGTATTATGGGATGGA+GGG - chr4.1:44646906-44646925 MS.gene070813:intron 40.0%
GTGTGGTAAATATCTCACGT+TGG - chr4.1:44645891-44645910 MS.gene070813:intron 40.0%
GTTTCACTAAATGGAGTGCA+AGG - chr4.1:44649350-44649369 MS.gene070813:intron 40.0%
TGAAGGATTTGGGAATGGAA+AGG - chr4.1:44649465-44649484 MS.gene070813:intron 40.0%
TGACATATAGGTAGGTGGAT+GGG + chr4.1:44650323-44650342 None:intergenic 40.0%
TGAGGAAAAGAGAGTAGTTG+AGG - chr4.1:44649385-44649404 MS.gene070813:intron 40.0%
TGTCAAGTATTATGGGATGG+AGG - chr4.1:44646905-44646924 MS.gene070813:intron 40.0%
TGTGGCTGAAAAATAGGAAG+TGG + chr4.1:44647790-44647809 None:intergenic 40.0%
TTAAGCGTATACCCGCAAAA+CGG - chr4.1:44651031-44651050 MS.gene070813:intron 40.0%
TTCCATTCCCAAATCCTTCA+TGG + chr4.1:44649465-44649484 None:intergenic 40.0%
! AAAGTGGTAGGGTTTTTACC+TGG - chr4.1:44651074-44651093 MS.gene070813:intron 40.0%
! AAGTGAATAAGTGGAGTGTC+CGG + chr4.1:44647635-44647654 None:intergenic 40.0%
! AGGAAGTGTGGCTGAAAAAT+AGG + chr4.1:44647796-44647815 None:intergenic 40.0%
! CAGTTTTTGATGTGGTGAGA+AGG - chr4.1:44649989-44650008 MS.gene070813:intron 40.0%
! CATATGTTGAGCTTGGTTCT+AGG + chr4.1:44649092-44649111 None:intergenic 40.0%
! CTTAGAGGCAGTTTTTGATG+TGG - chr4.1:44649981-44650000 MS.gene070813:intron 40.0%
! GGACTTGTTCAAATTGCTGA+AGG - chr4.1:44648111-44648130 MS.gene070813:intron 40.0%
! GTTTTCTCTTGGATCATGAG+AGG + chr4.1:44646008-44646027 None:intergenic 40.0%
!! AGTGAAACACCAAGTTGGTA+TGG + chr4.1:44649338-44649357 None:intergenic 40.0%
!! GCTATTTTCGGGAAGATGAA+CGG + chr4.1:44647299-44647318 None:intergenic 40.0%
!! TTGATTTGCATGACTCACCA+TGG + chr4.1:44650578-44650597 None:intergenic 40.0%
!!! CTCGGATTCTAGGTTTTGTT+AGG - chr4.1:44648768-44648787 MS.gene070813:intron 40.0%
!!! GGCAAAACCATGTTTTGACA+AGG - chr4.1:44650690-44650709 MS.gene070813:intron 40.0%
AAAAGTGACTCTAGTGCCTG+GGG - chr4.1:44648171-44648190 MS.gene070813:intron 45.0%
AAACTGCCTCTAAGTCTGCA+AGG + chr4.1:44649975-44649994 None:intergenic 45.0%
ACAAAGAACCTTTCCCTGGT+TGG - chr4.1:44649762-44649781 MS.gene070813:intron 45.0%
ACAAGAGGGAGCTACTGAAA+AGG - chr4.1:44649427-44649446 MS.gene070813:intron 45.0%
ACCAATGTCATGTAGAACGG+TGG - chr4.1:44646288-44646307 MS.gene070813:intron 45.0%
AGCCACACTTCCTTGAATTG+TGG - chr4.1:44647803-44647822 MS.gene070813:CDS 45.0%
AGGCCCTATGTGTTCTTCAA+TGG - chr4.1:44651411-44651430 MS.gene070813:intron 45.0%
ATCACGTGGGTTCATCTGTT+GGG - chr4.1:44650617-44650636 MS.gene070813:intron 45.0%
ATGCTTCCTTGCAGACTTAG+AGG - chr4.1:44649966-44649985 MS.gene070813:intron 45.0%
ATGGGTCATCTATTGCGGAA+CGG + chr4.1:44646682-44646701 None:intergenic 45.0%
CAAAGAACCTTTCCCTGGTT+GGG - chr4.1:44649763-44649782 MS.gene070813:intron 45.0%
CACGCCATTGAAGAACACAT+AGG + chr4.1:44651418-44651437 None:intergenic 45.0%
CACTAGAAGACTGCACAATG+AGG - chr4.1:44645645-44645664 MS.gene070813:intron 45.0%
CATTCACCACCATATCAGCA+GGG + chr4.1:44650543-44650562 None:intergenic 45.0%
CGTTCTACATGACATTGGTG+AGG + chr4.1:44646287-44646306 None:intergenic 45.0%
GAAAAAGTGACTCTAGTGCC+TGG - chr4.1:44648169-44648188 MS.gene070813:intron 45.0%
GAAGGAAGAGCCATCAAAGT+TGG - chr4.1:44650712-44650731 MS.gene070813:intron 45.0%
GCAAGGACTAGACATTGATG+AGG - chr4.1:44649367-44649386 MS.gene070813:intron 45.0%
GCAATGGGAGAAATGCTAGT+GGG - chr4.1:44649680-44649699 MS.gene070813:intron 45.0%
GGTGAATTTCTCTAGCCGAT+AGG - chr4.1:44647659-44647678 MS.gene070813:CDS 45.0%
GTAGAGGATCCATACCAACT+TGG - chr4.1:44649326-44649345 MS.gene070813:intron 45.0%
GTGACAAACGTTACGTCTCT+TGG - chr4.1:44646185-44646204 MS.gene070813:intron 45.0%
TACCAAGTGAGCTAAGCTCA+CGG + chr4.1:44647572-44647591 None:intergenic 45.0%
TATCACGTGGGTTCATCTGT+TGG - chr4.1:44650616-44650635 MS.gene070813:intron 45.0%
TCCACCGTTCTACATGACAT+TGG + chr4.1:44646292-44646311 None:intergenic 45.0%
TGAGCTTAGCTCACTTGGTA+AGG - chr4.1:44647572-44647591 MS.gene070813:intron 45.0%
TGCATATATATGCAGGGGTC+GGG - chr4.1:44647600-44647619 MS.gene070813:intron 45.0%
TGCCACAATTCAAGGAAGTG+TGG + chr4.1:44647808-44647827 None:intergenic 45.0%
TGCCATGAAGGATTTGGGAA+TGG - chr4.1:44649460-44649479 MS.gene070813:intron 45.0%
! AGTGAATAAGTGGAGTGTCC+GGG + chr4.1:44647634-44647653 None:intergenic 45.0%
! TACGTTGCAAGTCCGTTTTG+CGG + chr4.1:44651046-44651065 None:intergenic 45.0%
! TGCGGTTGGTTGAACTTTAC+AGG - chr4.1:44651391-44651410 MS.gene070813:intron 45.0%
! TTTTCTTGGGAAATGTCCCC+AGG + chr4.1:44648190-44648209 None:intergenic 45.0%
!! TAATAATTAAAGAAAATTAA+AGG + chr4.1:44649864-44649883 None:intergenic 5.0%
!!! AAAAATATTAATATGATTTT+TGG - chr4.1:44650272-44650291 MS.gene070813:intron 5.0%
!!! AAATCATATTAATATTTTTT+AGG + chr4.1:44650271-44650290 None:intergenic 5.0%
AAGATGGTGTCCACCCTTGT+CGG - chr4.1:44645949-44645968 MS.gene070813:intron 50.0%
ACCAAGTGAGCTAAGCTCAC+GGG + chr4.1:44647571-44647590 None:intergenic 50.0%
ATACCGAGAGTAACCCGACA+AGG + chr4.1:44645966-44645985 None:intergenic 50.0%
CAACCAACCGCATCACAGTA+TGG + chr4.1:44651383-44651402 None:intergenic 50.0%
GAAGCAGATCCCTGCTGATA+TGG - chr4.1:44650531-44650550 MS.gene070813:intron 50.0%
GAATGCAATGCTAGTGGCCA+TGG - chr4.1:44650558-44650577 MS.gene070813:intron 50.0%
GAGAGGAGGACTGATAGTAG+AGG - chr4.1:44649310-44649329 MS.gene070813:intron 50.0%
GCATACGTATGTGGAGAGAG+AGG - chr4.1:44649293-44649312 MS.gene070813:intron 50.0%
GCATATATATGCAGGGGTCG+GGG - chr4.1:44647601-44647620 MS.gene070813:intron 50.0%
GCATTCACCACCATATCAGC+AGG + chr4.1:44650544-44650563 None:intergenic 50.0%
GGAAGGTCCATACTGTGATG+CGG - chr4.1:44651373-44651392 MS.gene070813:intron 50.0%
GGCAATGGGAGAAATGCTAG+TGG - chr4.1:44649679-44649698 MS.gene070813:intron 50.0%
GGTGGTGAATGCAATGCTAG+TGG - chr4.1:44650552-44650571 MS.gene070813:intron 50.0%
GTCATCTATTGCGGAACGGA+TGG + chr4.1:44646678-44646697 None:intergenic 50.0%
GTGCTTGTCCACGTATCAAC+AGG - chr4.1:44648509-44648528 MS.gene070813:intron 50.0%
TACCGAGAGTAACCCGACAA+GGG + chr4.1:44645965-44645984 None:intergenic 50.0%
TACGTATGTGGAGAGAGAGG+AGG - chr4.1:44649296-44649315 MS.gene070813:intron 50.0%
TTACTCCTTCGACCCAACCA+GGG + chr4.1:44649778-44649797 None:intergenic 50.0%
! ACGTTGCAAGTCCGTTTTGC+GGG + chr4.1:44651045-44651064 None:intergenic 50.0%
! ATTTTCACACCCACCTCACG+TGG - chr4.1:44647988-44648007 MS.gene070813:intron 50.0%
! GTGAATAAGTGGAGTGTCCG+GGG + chr4.1:44647633-44647652 None:intergenic 50.0%
! TTTTCACACCCACCTCACGT+GGG - chr4.1:44647989-44648008 MS.gene070813:intron 50.0%
!!! GTTTTGGTACTTGGTGCTGC+TGG - chr4.1:44645409-44645428 MS.gene070813:CDS 50.0%
AGATGGTGTCCACCCTTGTC+GGG - chr4.1:44645950-44645969 MS.gene070813:intron 55.0%
ATACGTGGACAAGCACCCTG+AGG + chr4.1:44648505-44648524 None:intergenic 55.0%
CACCCTTGTCGGGTTACTCT+CGG - chr4.1:44645960-44645979 MS.gene070813:intron 55.0%
CCAAGTGAGCTAAGCTCACG+GGG + chr4.1:44647570-44647589 None:intergenic 55.0%
CTGGTTGGGTCGAAGGAGTA+AGG - chr4.1:44649777-44649796 MS.gene070813:intron 55.0%
CTTACTCCTTCGACCCAACC+AGG + chr4.1:44649779-44649798 None:intergenic 55.0%
GCAGATCCCTGCTGATATGG+TGG - chr4.1:44650534-44650553 MS.gene070813:intron 55.0%
GGTCCATACTGTGATGCGGT+TGG - chr4.1:44651377-44651396 MS.gene070813:intron 55.0%
TTTCACACCCACCTCACGTG+GGG - chr4.1:44647990-44648009 MS.gene070813:intron 55.0%
CCCCGTGAGCTTAGCTCACT+TGG - chr4.1:44647567-44647586 MS.gene070813:intron 60.0%
CCTTCGACCCAACCAGGGAA+AGG + chr4.1:44649773-44649792 None:intergenic 60.0%
CCTTTCCCTGGTTGGGTCGA+AGG - chr4.1:44649770-44649789 MS.gene070813:intron 60.0%
CGAGAGTAACCCGACAAGGG+TGG + chr4.1:44645962-44645981 None:intergenic 60.0%
CAAGCCTCCCCACGTGAGGT+GGG + chr4.1:44648000-44648019 None:intergenic 65.0%
TAGCCAAGCCTCCCCACGTG+AGG + chr4.1:44648004-44648023 None:intergenic 65.0%
AGGGGTCGGGGTTCGAACCC+CGG - chr4.1:44647613-44647632 MS.gene070813:intron 70.0%
CACACCCACCTCACGTGGGG+AGG - chr4.1:44647993-44648012 MS.gene070813:intron 70.0%
CCAAGCCTCCCCACGTGAGG+TGG + chr4.1:44648001-44648020 None:intergenic 70.0%
CCACCTCACGTGGGGAGGCT+TGG - chr4.1:44647998-44648017 MS.gene070813:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 44645364 44651757 44645364 ID=MS.gene070813
chr4.1 mRNA 44645364 44651757 44645364 ID=MS.gene070813.t1;Parent=MS.gene070813
chr4.1 exon 44651676 44651757 44651676 ID=MS.gene070813.t1.exon1;Parent=MS.gene070813.t1
chr4.1 CDS 44651676 44651757 44651676 ID=cds.MS.gene070813.t1;Parent=MS.gene070813.t1
chr4.1 exon 44651455 44651558 44651455 ID=MS.gene070813.t1.exon2;Parent=MS.gene070813.t1
chr4.1 CDS 44651455 44651558 44651455 ID=cds.MS.gene070813.t1;Parent=MS.gene070813.t1
chr4.1 exon 44648819 44649021 44648819 ID=MS.gene070813.t1.exon3;Parent=MS.gene070813.t1
chr4.1 CDS 44648819 44649021 44648819 ID=cds.MS.gene070813.t1;Parent=MS.gene070813.t1
chr4.1 exon 44648591 44648691 44648591 ID=MS.gene070813.t1.exon4;Parent=MS.gene070813.t1
chr4.1 CDS 44648591 44648691 44648591 ID=cds.MS.gene070813.t1;Parent=MS.gene070813.t1
chr4.1 exon 44647635 44647827 44647635 ID=MS.gene070813.t1.exon5;Parent=MS.gene070813.t1
chr4.1 CDS 44647635 44647827 44647635 ID=cds.MS.gene070813.t1;Parent=MS.gene070813.t1
chr4.1 exon 44647323 44647484 44647323 ID=MS.gene070813.t1.exon6;Parent=MS.gene070813.t1
chr4.1 CDS 44647323 44647484 44647323 ID=cds.MS.gene070813.t1;Parent=MS.gene070813.t1
chr4.1 exon 44647119 44647200 44647119 ID=MS.gene070813.t1.exon7;Parent=MS.gene070813.t1
chr4.1 CDS 44647119 44647200 44647119 ID=cds.MS.gene070813.t1;Parent=MS.gene070813.t1
chr4.1 exon 44646314 44646583 44646314 ID=MS.gene070813.t1.exon8;Parent=MS.gene070813.t1
chr4.1 CDS 44646314 44646583 44646314 ID=cds.MS.gene070813.t1;Parent=MS.gene070813.t1
chr4.1 exon 44645685 44645812 44645685 ID=MS.gene070813.t1.exon9;Parent=MS.gene070813.t1
chr4.1 CDS 44645685 44645812 44645685 ID=cds.MS.gene070813.t1;Parent=MS.gene070813.t1
chr4.1 exon 44645364 44645517 44645364 ID=MS.gene070813.t1.exon10;Parent=MS.gene070813.t1
chr4.1 CDS 44645364 44645517 44645364 ID=cds.MS.gene070813.t1;Parent=MS.gene070813.t1
Gene Sequence

>MS.gene070813

ATGGATCAATTTGGCAGTATTGCTCACTTCCTTGAGCATAAGAATGTTTTGGTACTTGGTGCTGCTGGCTTCCTTGCAAAGAGTAACTCTCTTTCTAAGCTTACTTACTTGTGTGCATATACATATACAAATAAGTAAATAGTTAAATGTATTTAATTCAAATTAATATGTGTATACTTACTATAGTGTATATTTGTAGTTTTTGTGGAGAAGATATTAAGAGTTCAACCAAATGTGAAGAAACTTTATCTTCTTTTGAGAGCTACGGATGCTGAATCTGTCACTAGAAGACTGCACAATGAGGTATGTATAGACATTAAAAGGTTATAAAGTTTATTAAATTTGTGTATAAGGTCACTACCAAAAAAAATTATTTGTGTATAAGGTACGGTGATTCATCTAATTTGTTATGCCCTCTCTTTTTGTCCTTGTGTTTCTTCATGAGACATTGTAACGTTTGAATCCAAAACTCTCAATTTATTAAGTAATACTATAAGTAATTAATGATGATTATGTTGGTATCTTAAGTGTGGTAAATATCTCACGTTGGATGGAAAAAATTATGTTGAGTACTATAAGTGAGTAAAGATGGTGTCCACCCTTGTCGGGTTACTCTCGGTATAAGTCCTTTTTTTTTTACTCCTCTCATGATCCAAGAGAAAACTCTTAACATTCTTTTTGGATCCGTAAAATTACATAAAAATCTAATCAGAAATGCTGAAACACACGATAACATTTGTCGTCATATTTGCACGAACAAGTGTATACTCAAGTGTATACTTGTCATTTAGTTTTTCATCTTAATTTTACTTTGACACAAAGTGACAAACGTTACGTCTCTTGGATATATCTTATGAGAAATCACAAAAATATCTTATCGGTGGTGCTTCTCCAAATCTACTGTTGTTGTCGGTGTCTTGCCTCACCAATGTCATGTAGAACGGTGGATCATGCATATGCTCTTTCTTTGGTAACATGGTTTTTTAATATATATTCTATACAAAAGCATAAATAAATTAGCAAGAAATCCATTACTAAAATAAATTGCATGTTGTAGAACTTGTCGTGTGATTTCGTGCGTTAACTCTATAGCAGACAAACATAACCAAAAATCCGTCTTTTGTGTACTAATCTTAATGTTAACTTGATATAGCTCAATAATTCAACTTTTATGATGTAAATTTAGGCATAAAAAAGAAGAAAAAAAACCCTAATGGTGAAAAAGACACCAATTAACATATTTAACTAAAATATTTTACATCTAAACAAAAGAAATATTAAATAAAATTCTCATAAAATATTAGTACTACTCCATCCGTTCCGCAATAGATGACCCATTTGAAAATATACAATTTTGACCTAACTTACTTTGACCGTATTTTTCTATTAATATACAAAGATAAATAATATCATATAAGATATCGTTAGATTCATCTCGATGAGTATTTTCAAAATATCAAATTTTCATAATTTTTTCCAATATATTATTCAAGATATTTAAGCTCAAAGTTATGCATTGACATGCTTAATAAGGTCAATTGTGTCAAGTATTATGGGATGGAGGGAGTAACATTTTAAGGCTTCTATTTATTGTAGCAGTCTATTTATTATAGGAGTAATGACTACATTCAATTTTTTGGAACTGTTTGTGCAGACTCAGTAGTTATGTTTTGAGTAGTGATATTTGTACAACTCTTTGGTACAACTTTTATGACAACTTTGATTTTCTCTCTTTTGATTGGTCAAAAATAATAGAGAGAGAAAAAAGAAAAGAGAAAATAAGAAGATAATGTGAGTATGAGAGAGAAAGTTGTCAAAAAGTTGTTAGAAAATGGTTGTACAAATATCATTTCTCTTATGCTTTAGAGAGAAAAAAATAGATAAGCTTACATATATATACTGTTGAATTTTGACACCTATAAAAAATTGTTACCGTTCATCTTCCCGAAAATAGCAGTTTAAACGGTTGGCTTCTATTCAAAGAATCAATTTCCCACTTGTCTAATCTAATTCATGAAATTAATTATGAGGATCTTTGTCTGATAGTGACTTTTTGAGAATATCATAATTGGTGAGTGGTTCCACTAATTATAATTTTCATTCAATTATTGAGTTCTTTTGTTTATGACAAAATTAATGAGTATTTAAGTTATCTTAAATATAAGACGGTGACTTCTTTTCCTCAATAAAAAAAGTTGGAAGTCCCCGTGAGCTTAGCTCACTTGGTAAGGAATAATGCATATATATGCAGGGGTCGGGGTTCGAACCCCGGACACTCCACTTATTCACTTTTAAGGTGAATTTCTCTAGCCGATAGGCTACTTGACCAAAAAAAAAGTTGGAAAATGCTATTTATCTAGAAAAATAGCCTCAAGAATTTTTCAAGACACATGTGGCAAGTTTTAATTGCATGATTTATTTGTCCACTTCCTATTTTTCAGCCACACTTCCTTGAATTGTGGCAAATAGTGCATTGTGATTGGTTGCTTATTATTCTTGAAGAATTATTGATGTTTAGCAATGCTCAAAAAAGTTATCCTAAATATATATTTTTTTTTTTTGAGTAATTATCCTAAAGTATATTTGTGATGGTGACTTTTGAGAATAATTGCAATATACCATTAATTTTCACACCCACCTCACGTGGGGAGGCTTGGCTAATAATTTATCTCTACTACTTTTTTTTTTTACGCAAATATTTCTCTACTTAGAATAACGTTATATTTTCATATGTAGATTTTGCGAAAGGACTTGTTCAAATTGCTGAAGGAAAATCATGGAGCAAAGTTCAATAGTTTTATCTCTGAAAAAGTGACTCTAGTGCCTGGGGACATTTCCCAAGAAAATTTCAATTTGAAGGACTCCAATCTACTTCAAGAGTTATACAATCAAACTGATGTCATTGTGAATTTAGCTGCAACAACTAACTTTGATGAAAGGTATAGTTAATATATATAATTATAATTAATTAGCTACTAACAGCTACATGTAATTTAATAATATTAGTATTTATTTATATTTAATCAGTGTTAATAAATCTCTTAACTCTTATTCTATTGCATGCAGATATGATGTAGCATTGGGTTTAAATACATTTGGAGTCAAGCATGTCTTAAACTTTGCCAAAAATTGTATTAACCTCAGGGTGCTTGTCCACGTATCAACAGGTTTGTATTTCAATACGTTGTATAAATAAATGAGTTATATTAGTCTTTTTTTAAGGAAAATGATATATATATATATATATATATATATATATATATATATATATATATATATATAATATTGGTTGATAATTGAATCCCAAGATTGTTTGAAAAGCTCTCATTTATCGGAAAGATAGTTTTTGATGGAACAAATATATAGAACCTAAATTCCAATATGCATCTTTTCCACTATAATCTCTCGGATTCTAGGTTTTGTTAGGCTTTTTTTTTTCTTCTCTTTTTTTGAGCTTGAGCAATATAGGTAAACAACAATCATCTGACATTTGCCTATATTTATATCCATCAAATTTAGAAATTTTTTACTTAGATGAATTTTTCAATTACGTGGAGTGTAGAAAATATCTACAAGTGTACAAGAAAAGTGGTTGCATCTTAAGATAGTTATTAGGTCCACTTCTGACAAACTATTTTTCGCAATTCAATGTGGTTGCATGAATGTGATATTAACCTAGAACCAATAAAATAAAATATGGTAGGCCTACTAGCACGTAAGATTAACCTAGAACCAAGCTCAACATATGACCATAATACTGCAACACATACCTTAAATGGAGTAATAGACAAGTTGACTTTTTATTTTTTGAGAGAATACCACAAAAGTTTAGTTGGTGAACTTAATATGTGGCATTTAGTATCAATCAATGTAGGTACACCATGCTTATTGAAATTAATTAATATAATGTATATGATTGATTAAATGTAGCATACGTATGTGGAGAGAGAGGAGGACTGATAGTAGAGGATCCATACCAACTTGGTGTTTCACTAAATGGAGTGCAAGGACTAGACATTGATGAGGAAAAGAGAGTAGTTGAGGAGAAATTGAACATGCTTCAACAAGAGGGAGCTACTGAAAAGGATACTAAAATTGCCATGAAGGATTTGGGAATGGAAAGGTTATAATTAGCATCTACTTCTATAACTATATATGAAAATAATTATTTTTTAAATTAGTTATTTTCAATTCAATAAAAAATAGTTATAACCAATAAACAAATTAACAACAAATCTTGATGTGTTTGATTTCATTTTAATAAAATTTTCAGAGCAAAATTATATGGTTGGCCAAACACATATGTCTTTACAAAGGCAATGGGAGAAATGCTAGTGGGAACTATGAAGGAAAAATTGTCCATTGTTATTGTGAGACCTACAATCATTACCAGCACTTACAAAGAACCTTTCCCTGGTTGGGTCGAAGGAGTAAGGTAAATTAATTACCAAATTTTTTATTGTAGTTAATTATGTTCATTTACCTTTATTATGTGTTCCTTTAATTTTCTTTAATTATTAGCAGATAATAACTATATTTTTTCATCTCTTTTTGCAGAACCATAGACAGTTTAATTGTTGCATATGGTAAAGGAAAATTAACATGCTTCCTTGCAGACTTAGAGGCAGTTTTTGATGTGGTGAGAAGGATTTTAGTTTATCTTCTTTAAAAGGAAATGAATTAGTTGATATTATTACCCTTTTGGTCTTCATATTTTTGACTCATCCACAATTTTGATCACTTTTTATAAAATTCACAATTGTAATTTTCTTTATTTAAAAAAAAAAAGTGTGATATTTTATCCAAAGAATTTGGGTAAAGTTTTGATAATAGGATAAATATGTTACTTACCAACATCATCTCCTACAATAAACTAACAGAAAACCATGTTAATTTTTTAAATACCTAAAAAATATTAATATGATTTTTGGTTAGCAGACAAATACCTATAATATACCCATCCACCTACCTATATGTCATAATCATTTGTCACATAAATATTTTACTTGCACGTCATTGGCAAAACGTCACACTTTTTTGAAATGGGGACTAAATCTTCTTGAATTAAAAAAAAGGGACCAAAATTGTGTATTAGAAAAAAAAATAACATAACTAAATGTATAATTAGGCCTAGACAAAATTGATTTAATTATGCATGTGTTAATTTGAAGCAGATCCCTGCTGATATGGTGGTGAATGCAATGCTAGTGGCCATGGTGAGTCATGCAAATCAACCTTGTGATGATAGCATATATCACGTGGGTTCATCTGTTGGGAATCCAGTGAGATATGAGAGTCTTAGAGACTACAGCTTCAGATATTTTACGGCAAAACCATGTTTTGACAAGGAAGGAAGAGCCATCAAAGTTGGCAAAGTTACCGTATTGGAAAATATGAATAGCTTCCAAAGATACATGTACATTCGTTACTTGCTTCCTTTAAAGGTTATTCAATTTCTAATCCTCAATTACTTCTATTTTTCCATTCATGCAAAACAATTGACTTTTATTATAACTATGTCCAAAGTTAACACATAATTATTTGTCATTTGTAGACAAATGAAAACTTTGTTACACCGACAATGTATCGAAATTAAACTCTAGGGTTTGGGTGCCCGTTGTACTCGTTATCTATTAAAAAAATCTTTAAAAAATATTGAATTCTTTTTTAAGCGTATACCCGCAAAACGGACTTGCAACGTAAGTATTTAAAAGTGGTAGGGTTTTTACCTGGATCTTAGCATATTAAATTTAGTTGTCGCTTTTTACCGTATGAATTGTACCTACGAAAAAAAATTAAACTTGTTTTTTAGGTGAAGAAAATTACACTCTTTATTTTTGTTATTATGATATTAATACGAAGTTTTCACGCATTGATTAAACTCTTTTATTATTGACAATCATAAACAAAAATGTGCTTACTAATTAATTTGTGTTTTATAACAGGGGCTAGAGCTAGTGAACGCAGCTTTTTGCCGCTATTTTCAAAGTACATATTTTGATATCAGCAGGAAGGTCCATACTGTGATGCGGTTGGTTGAACTTTACAGGCCCTATGTGTTCTTCAATGGCGTGTAAGTTACTATACAAGATAAAATTTAGTGACAAGAAAATTAGATATGAATTTTACACTATTATTCATTTCAAATTTTGGTGACTATTTTTTTTTACTAGCTATTATACTAATTAGCAAAAGATATTATATCATTGATTTGATAAGATAAGCTTGTTTTGTGCACAGATTTGATAATATGAACGCAGAGAAGTTGCAAATAGCAGCAAGACAAAGTGGAGTAGAGATGGATTTATTTTACTTTGACCCAAAAATGATTAACTGGGAGGACTATTTCATGAACATTCATATTCCTGGCATTGTCAAATATTCCTTCAAGTGA

Protein sequence

>MS.gene070813.t1

MDQFGSIAHFLEHKNVLVLGAAGFLAKIFVEKILRVQPNVKKLYLLLRATDAESVTRRLHNEILRKDLFKLLKENHGAKFNSFISEKVTLVPGDISQENFNLKDSNLLQELYNQTDVIVNLAATTNFDERYDVALGLNTFGVKHVLNFAKNCINLRVLVHVSTAYVCGERGGLIVEDPYQLGVSLNGVQGLDIDEEKRVVEEKLNMLQQEGATEKDTKIAMKDLGMERAKLYGWPNTYVFTKAMGEMLVGTMKEKLSIVIVRPTIITSTYKEPFPGWVEGVRTIDSLIVAYGKGKLTCFLADLEAVFDVIPADMVVNAMLVAMVSHANQPCDDSIYHVGSSVGNPVRYESLRDYSFRYFTAKPCFDKEGRAIKVGKVTVLENMNSFQRYMYIRYLLPLKGLELVNAAFCRYFQSTYFDISRKVHTVMRLVELYRPYVFFNGVFDNMNAEKLQIAARQSGVEMDLFYFDPKMINWEDYFMNIHIPGIVKYSFK