Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071073.t1 | XP_003614194.2 | 98.4 | 251 | 4 | 0 | 1 | 251 | 1 | 251 | 4.10E-140 | 507.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071073.t1 | Q9AR07 | 44.9 | 263 | 133 | 3 | 1 | 251 | 1 | 263 | 1.3e-54 | 214.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071073.t1 | G7JWX2 | 98.4 | 251 | 4 | 0 | 1 | 251 | 61 | 311 | 2.9e-140 | 507.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050646 | MS.gene071073 | 0.824633 | 7.26E-54 | -1.69E-46 |
| MS.gene050689 | MS.gene071073 | 0.803042 | 4.21E-49 | -1.69E-46 |
| MS.gene051343 | MS.gene071073 | 0.810439 | 1.15E-50 | -1.69E-46 |
| MS.gene052307 | MS.gene071073 | 0.81894 | 1.51E-52 | -1.69E-46 |
| MS.gene052609 | MS.gene071073 | 0.83517 | 1.96E-56 | -1.69E-46 |
| MS.gene053143 | MS.gene071073 | 0.817643 | 2.96E-52 | -1.69E-46 |
| MS.gene054004 | MS.gene071073 | 0.801389 | 9.22E-49 | -1.69E-46 |
| MS.gene055513 | MS.gene071073 | 0.8011 | 1.06E-48 | -1.69E-46 |
| MS.gene056699 | MS.gene071073 | 0.81125 | 7.69E-51 | -1.69E-46 |
| MS.gene057034 | MS.gene071073 | 0.821047 | 4.97E-53 | -1.69E-46 |
| MS.gene057174 | MS.gene071073 | 0.800438 | 1.44E-48 | -1.69E-46 |
| MS.gene057371 | MS.gene071073 | 0.802769 | 4.79E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene071073 | 0.830247 | 3.27E-55 | -1.69E-46 |
| MS.gene059007 | MS.gene071073 | 0.805037 | 1.62E-49 | -1.69E-46 |
| MS.gene060244 | MS.gene071073 | 0.808387 | 3.18E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene071073 | 0.804969 | 1.67E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071073.t1 | MTR_5g046110 | 98.406 | 251 | 4 | 0 | 1 | 251 | 61 | 311 | 0.0 | 517 |
| MS.gene071073.t1 | MTR_3g117060 | 51.339 | 224 | 109 | 0 | 1 | 224 | 1 | 224 | 1.14e-78 | 241 |
| MS.gene071073.t1 | MTR_5g020940 | 47.200 | 250 | 125 | 2 | 1 | 249 | 11 | 254 | 1.96e-78 | 241 |
| MS.gene071073.t1 | MTR_8g077040 | 44.622 | 251 | 133 | 1 | 1 | 251 | 1 | 245 | 1.34e-77 | 239 |
| MS.gene071073.t1 | MTR_8g076900 | 46.988 | 249 | 126 | 1 | 1 | 249 | 1 | 243 | 1.14e-75 | 230 |
| MS.gene071073.t1 | MTR_8g076900 | 46.988 | 249 | 126 | 1 | 1 | 249 | 1 | 243 | 1.28e-74 | 231 |
| MS.gene071073.t1 | MTR_8g020700 | 47.200 | 250 | 125 | 2 | 1 | 249 | 1 | 244 | 1.84e-74 | 227 |
| MS.gene071073.t1 | MTR_8g020690 | 47.036 | 253 | 125 | 4 | 1 | 251 | 1 | 246 | 1.27e-73 | 228 |
| MS.gene071073.t1 | MTR_6g056070 | 44.444 | 252 | 133 | 2 | 1 | 251 | 1 | 246 | 1.45e-73 | 228 |
| MS.gene071073.t1 | MTR_8g020700 | 47.200 | 250 | 125 | 2 | 1 | 249 | 1 | 244 | 2.57e-73 | 228 |
| MS.gene071073.t1 | MTR_4g018820 | 43.426 | 251 | 136 | 2 | 1 | 251 | 1 | 245 | 2.53e-72 | 225 |
| MS.gene071073.t1 | MTR_3g467270 | 43.028 | 251 | 136 | 2 | 1 | 251 | 1 | 244 | 7.38e-70 | 219 |
| MS.gene071073.t1 | MTR_3g467560 | 47.619 | 231 | 119 | 2 | 1 | 230 | 25 | 254 | 1.11e-67 | 214 |
| MS.gene071073.t1 | MTR_7g084620 | 48.918 | 231 | 105 | 5 | 1 | 225 | 1 | 224 | 6.47e-63 | 201 |
| MS.gene071073.t1 | MTR_1g022455 | 46.743 | 261 | 125 | 5 | 1 | 249 | 1 | 259 | 1.31e-62 | 201 |
| MS.gene071073.t1 | MTR_1g022465 | 44.788 | 259 | 133 | 3 | 1 | 249 | 1 | 259 | 1.04e-61 | 198 |
| MS.gene071073.t1 | MTR_7g084350 | 45.778 | 225 | 118 | 3 | 3 | 225 | 1 | 223 | 1.76e-60 | 195 |
| MS.gene071073.t1 | MTR_8g077030 | 41.778 | 225 | 103 | 2 | 1 | 225 | 1 | 197 | 1.10e-51 | 176 |
| MS.gene071073.t1 | MTR_3g054330 | 36.820 | 239 | 146 | 2 | 1 | 235 | 10 | 247 | 2.11e-48 | 164 |
| MS.gene071073.t1 | MTR_5g093900 | 35.484 | 248 | 143 | 4 | 1 | 235 | 13 | 256 | 7.77e-48 | 163 |
| MS.gene071073.t1 | MTR_3g052700 | 35.366 | 246 | 144 | 4 | 1 | 235 | 13 | 254 | 1.48e-47 | 162 |
| MS.gene071073.t1 | MTR_1g108660 | 44.706 | 170 | 81 | 2 | 50 | 219 | 38 | 194 | 8.06e-41 | 143 |
| MS.gene071073.t1 | MTR_7g084330 | 43.931 | 173 | 77 | 4 | 54 | 225 | 39 | 192 | 1.28e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071073.t1 | AT4G36470 | 63.241 | 253 | 90 | 2 | 2 | 251 | 5 | 257 | 1.65e-118 | 343 |
| MS.gene071073.t1 | AT5G38020 | 44.130 | 247 | 128 | 3 | 6 | 251 | 3 | 240 | 1.03e-62 | 201 |
| MS.gene071073.t1 | AT1G19640 | 44.487 | 263 | 134 | 3 | 1 | 251 | 1 | 263 | 8.76e-61 | 196 |
| MS.gene071073.t1 | AT3G11480 | 43.725 | 247 | 128 | 4 | 5 | 249 | 27 | 264 | 3.26e-60 | 194 |
| MS.gene071073.t1 | AT5G66430 | 43.265 | 245 | 122 | 5 | 9 | 249 | 1 | 232 | 2.78e-58 | 189 |
| MS.gene071073.t1 | AT5G04370 | 42.449 | 245 | 129 | 4 | 9 | 251 | 41 | 275 | 4.96e-57 | 187 |
| MS.gene071073.t1 | AT5G04370 | 42.449 | 245 | 129 | 4 | 9 | 251 | 46 | 280 | 6.56e-57 | 187 |
| MS.gene071073.t1 | AT5G04370 | 42.449 | 245 | 129 | 4 | 9 | 251 | 60 | 294 | 7.79e-57 | 187 |
| MS.gene071073.t1 | AT3G21950 | 39.676 | 247 | 139 | 3 | 6 | 251 | 3 | 240 | 1.24e-54 | 180 |
| MS.gene071073.t1 | AT3G21950 | 39.676 | 247 | 139 | 3 | 6 | 251 | 3 | 240 | 3.94e-54 | 179 |
| MS.gene071073.t1 | AT2G14060 | 43.119 | 218 | 114 | 3 | 9 | 225 | 14 | 222 | 7.13e-53 | 172 |
| MS.gene071073.t1 | AT2G14060 | 43.119 | 218 | 114 | 3 | 9 | 225 | 14 | 222 | 1.11e-51 | 172 |
| MS.gene071073.t1 | AT5G55250 | 39.095 | 243 | 136 | 4 | 1 | 235 | 13 | 251 | 2.77e-51 | 172 |
| MS.gene071073.t1 | AT5G04380 | 41.975 | 243 | 128 | 5 | 9 | 249 | 34 | 265 | 5.82e-51 | 171 |
| MS.gene071073.t1 | AT5G04380 | 41.975 | 243 | 128 | 5 | 9 | 249 | 38 | 269 | 8.34e-51 | 171 |
| MS.gene071073.t1 | AT5G38020 | 44.828 | 203 | 103 | 2 | 49 | 251 | 8 | 201 | 1.82e-50 | 168 |
| MS.gene071073.t1 | AT1G68040 | 38.938 | 226 | 120 | 5 | 3 | 223 | 7 | 219 | 1.17e-47 | 162 |
| MS.gene071073.t1 | AT5G04380 | 44.554 | 202 | 100 | 4 | 49 | 249 | 8 | 198 | 5.72e-46 | 156 |
| MS.gene071073.t1 | AT5G38780 | 37.339 | 233 | 124 | 5 | 7 | 230 | 8 | 227 | 2.71e-44 | 153 |
| MS.gene071073.t1 | AT5G37970 | 40.179 | 224 | 113 | 6 | 7 | 220 | 8 | 220 | 5.94e-44 | 152 |
| MS.gene071073.t1 | AT5G55250 | 39.524 | 210 | 115 | 4 | 34 | 235 | 8 | 213 | 4.10e-43 | 149 |
| MS.gene071073.t1 | AT5G56300 | 37.387 | 222 | 130 | 3 | 5 | 224 | 20 | 234 | 1.16e-42 | 149 |
| MS.gene071073.t1 | AT5G37990 | 37.449 | 243 | 127 | 7 | 7 | 239 | 8 | 235 | 8.19e-42 | 146 |
| MS.gene071073.t1 | AT5G38100 | 37.975 | 237 | 117 | 9 | 6 | 230 | 7 | 225 | 8.81e-42 | 143 |
| MS.gene071073.t1 | AT5G38100 | 37.975 | 237 | 117 | 9 | 6 | 230 | 7 | 225 | 1.02e-41 | 143 |
| MS.gene071073.t1 | AT5G38100 | 37.288 | 236 | 120 | 8 | 6 | 230 | 7 | 225 | 1.47e-40 | 143 |
| MS.gene071073.t1 | AT1G15125 | 37.443 | 219 | 120 | 4 | 9 | 223 | 1 | 206 | 1.57e-40 | 140 |
| MS.gene071073.t1 | AT1G15125 | 37.443 | 219 | 120 | 4 | 9 | 223 | 1 | 206 | 2.92e-39 | 139 |
| MS.gene071073.t1 | AT4G26420 | 36.283 | 226 | 132 | 5 | 3 | 224 | 7 | 224 | 1.33e-38 | 135 |
| MS.gene071073.t1 | AT5G38780 | 39.560 | 182 | 92 | 4 | 54 | 230 | 10 | 178 | 8.99e-38 | 134 |
| MS.gene071073.t1 | AT5G38100 | 37.619 | 210 | 107 | 7 | 28 | 230 | 10 | 202 | 1.46e-37 | 134 |
| MS.gene071073.t1 | AT4G26420 | 36.364 | 220 | 128 | 5 | 9 | 224 | 1 | 212 | 3.18e-37 | 132 |
| MS.gene071073.t1 | AT4G26420 | 36.283 | 226 | 132 | 5 | 3 | 224 | 7 | 224 | 3.52e-37 | 134 |
| MS.gene071073.t1 | AT3G44840 | 37.118 | 229 | 120 | 7 | 7 | 230 | 5 | 214 | 4.89e-35 | 128 |
| MS.gene071073.t1 | AT3G44870 | 35.266 | 207 | 117 | 4 | 7 | 212 | 5 | 195 | 5.10e-33 | 124 |
| MS.gene071073.t1 | AT3G44860 | 36.538 | 208 | 116 | 4 | 7 | 212 | 5 | 198 | 3.58e-32 | 120 |
| MS.gene071073.t1 | AT1G66700 | 31.019 | 216 | 130 | 4 | 9 | 219 | 9 | 210 | 5.94e-29 | 110 |
| MS.gene071073.t1 | AT1G66700 | 31.019 | 216 | 130 | 4 | 9 | 219 | 9 | 210 | 2.91e-28 | 110 |
| MS.gene071073.t1 | AT1G66720 | 30.769 | 221 | 124 | 6 | 9 | 219 | 9 | 210 | 1.83e-25 | 103 |
| MS.gene071073.t1 | AT1G66690 | 29.952 | 207 | 126 | 4 | 9 | 210 | 9 | 201 | 1.60e-24 | 100 |
Find 49 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACTTCAATTCTATCTTTA+AGG | 0.090377 | 5.1:+34085217 | MS.gene071073:CDS |
| ACAAAGTGCAAGTAACTATT+AGG | 0.200532 | 5.1:-34085341 | None:intergenic |
| TTGATGATTGATAGAGTATT+TGG | 0.223902 | 5.1:-34085104 | None:intergenic |
| TATCTTGATTAAGCAACTTT+TGG | 0.236852 | 5.1:-34085253 | None:intergenic |
| AGCCTACTCTAAGCAGTTTC+AGG | 0.250766 | 5.1:+34086051 | MS.gene071073:CDS |
| AAAATGGTGCTTACATTTCT+AGG | 0.257688 | 5.1:+34086127 | MS.gene071073:CDS |
| GAGTATAGGCATTGCTGATT+TGG | 0.281462 | 5.1:+34085067 | MS.gene071073:CDS |
| ACAGAGGCAACTCTTTCTTC+TGG | 0.290156 | 5.1:+34086173 | MS.gene071073:CDS |
| TTCTGTTCATCATAGATTGC+AGG | 0.310451 | 5.1:-34085968 | None:intergenic |
| CAGAGGCAACTCTTTCTTCT+GGG | 0.360572 | 5.1:+34086174 | MS.gene071073:CDS |
| AGTATAGGCATTGCTGATTT+GGG | 0.367599 | 5.1:+34085068 | MS.gene071073:CDS |
| TTGAAAGCCAGTGTAAACTA+TGG | 0.371002 | 5.1:-34085373 | None:intergenic |
| GCTGATTTGGGATGTTCATC+TGG | 0.374942 | 5.1:+34085080 | MS.gene071073:CDS |
| TCAGCAATGCCTATACTCTT+TGG | 0.382092 | 5.1:-34085062 | None:intergenic |
| TAGGCTTGAGAAACCACTTC+AGG | 0.390573 | 5.1:-34086034 | None:intergenic |
| TTGCCTCTGTCAACATGTTC+AGG | 0.395884 | 5.1:-34086160 | None:intergenic |
| ATAGAATTGAAGTCATTAGT+TGG | 0.400155 | 5.1:-34085209 | None:intergenic |
| AAAAGTTGCTTAATCAAGAT+AGG | 0.400547 | 5.1:+34085255 | MS.gene071073:CDS |
| ATAGTTTACACTGGCTTTCA+AGG | 0.405651 | 5.1:+34085375 | MS.gene071073:CDS |
| TTTCCTTGTTCCTTCGATCA+AGG | 0.407489 | 5.1:+34086080 | MS.gene071073:CDS |
| GAGAAAGTGTTTCATATGAC+TGG | 0.444815 | 5.1:+34084727 | MS.gene071073:CDS |
| CTTATGACTTGTTAATTGAA+TGG | 0.447928 | 5.1:-34085141 | None:intergenic |
| CAAAGTGCAAGTAACTATTA+GGG | 0.459256 | 5.1:-34085340 | None:intergenic |
| TCTGAAGAATTAGTTGTTGG+TGG | 0.473474 | 5.1:+34086103 | MS.gene071073:CDS |
| GAAACAACACCAAAGAGTAT+AGG | 0.498471 | 5.1:+34085053 | MS.gene071073:CDS |
| TTTCATATGACTGGAGGAGT+TGG | 0.517310 | 5.1:+34084736 | MS.gene071073:CDS |
| AGGTCTGAAGAATTAGTTGT+TGG | 0.520501 | 5.1:+34086100 | MS.gene071073:CDS |
| CAATCTATGATGAACAGAAA+AGG | 0.521627 | 5.1:+34085972 | MS.gene071073:CDS |
| CTTTACTATTCTAGTCTCAC+AGG | 0.527990 | 5.1:+34086213 | MS.gene071073:CDS |
| ACAGAAAAGGTCTTTGAACA+AGG | 0.529384 | 5.1:+34085985 | MS.gene071073:CDS |
| ATTCCTCCCATAGTTTACAC+TGG | 0.536094 | 5.1:+34085366 | MS.gene071073:CDS |
| AGGCTTGAGAAACCACTTCA+GGG | 0.555639 | 5.1:-34086033 | None:intergenic |
| CTTACATTTCTAGGAAGAAG+AGG | 0.558020 | 5.1:+34086136 | MS.gene071073:CDS |
| CTGTGAGACTAGAATAGTAA+AGG | 0.565747 | 5.1:-34086212 | None:intergenic |
| TAGTTTACACTGGCTTTCAA+GGG | 0.566931 | 5.1:+34085376 | MS.gene071073:CDS |
| ATGTGATAAAAGCCCTGAAG+TGG | 0.573917 | 5.1:+34086021 | MS.gene071073:CDS |
| TGAAAGCCAGTGTAAACTAT+GGG | 0.578907 | 5.1:-34085372 | None:intergenic |
| AGTCTTCCATAAAATGAACC+AGG | 0.581914 | 5.1:-34085314 | None:intergenic |
| AGGAGAATGAACCTGTAATG+AGG | 0.588359 | 5.1:-34084782 | None:intergenic |
| AGACCTTGATCGAAGGAACA+AGG | 0.605492 | 5.1:-34086083 | None:intergenic |
| TGTTCATCATAGATTGCAGG+AGG | 0.605716 | 5.1:-34085965 | None:intergenic |
| CAGAAAAGGTCTTTGAACAA+GGG | 0.606248 | 5.1:+34085986 | MS.gene071073:CDS |
| AGACTCTAAATTCAGTAGAG+TGG | 0.607770 | 5.1:-34085172 | None:intergenic |
| TTCCTGAAACTGCTTAGAGT+AGG | 0.616433 | 5.1:-34086053 | None:intergenic |
| ATTCTTCAGACCTTGATCGA+AGG | 0.628016 | 5.1:-34086090 | None:intergenic |
| AAAGTGTTTCATATGACTGG+AGG | 0.635621 | 5.1:+34084730 | MS.gene071073:CDS |
| AAGCCAGTGTAAACTATGGG+AGG | 0.640625 | 5.1:-34085369 | None:intergenic |
| GTCTTCCATAAAATGAACCA+GGG | 0.674623 | 5.1:-34085313 | None:intergenic |
| GGACCTGAACATGTTGACAG+AGG | 0.711511 | 5.1:+34086157 | MS.gene071073:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAATAAATATTATGAA+TGG | - | chr5.1:34084960-34084979 | None:intergenic | 10.0% |
| !! | ATTTAAATAAATGTTATGAA+TGG | - | chr5.1:34084875-34084894 | None:intergenic | 10.0% |
| !!! | AAATGTTATCTTTACTATTT+TGG | + | chr5.1:34086252-34086271 | MS.gene071073:intron | 15.0% |
| !!! | CAAAATTTTAAGGTAAAATA+AGG | - | chr5.1:34084841-34084860 | None:intergenic | 15.0% |
| !!! | TTGTAATTTTGATACATTTA+GGG | + | chr5.1:34085556-34085575 | MS.gene071073:intron | 15.0% |
| !!! | TTGTATTTTGTTAGTTAATT+TGG | + | chr5.1:34085491-34085510 | MS.gene071073:intron | 15.0% |
| !!! | TTTGTAATTTTGATACATTT+AGG | + | chr5.1:34085555-34085574 | MS.gene071073:intron | 15.0% |
| !! | AAAAAGAAGTAATGAAAAGA+AGG | - | chr5.1:34085413-34085432 | None:intergenic | 20.0% |
| !! | AAAACAAATGCATTCTATAT+AGG | + | chr5.1:34086337-34086356 | MS.gene071073:intron | 20.0% |
| !! | AAAGATAACATTTGTGTTAA+AGG | - | chr5.1:34086245-34086264 | None:intergenic | 20.0% |
| !! | AGATATTGAAGAATAATTGA+AGG | - | chr5.1:34084805-34084824 | None:intergenic | 20.0% |
| !! | ATTTATGAAAAACATATCTG+AGG | - | chr5.1:34085463-34085482 | None:intergenic | 20.0% |
| !! | TTAATCAAGATAGGAAAAAT+GGG | + | chr5.1:34085264-34085283 | MS.gene071073:CDS | 20.0% |
| !! | TTACCTATAAAAGATATACT+TGG | + | chr5.1:34085525-34085544 | MS.gene071073:intron | 20.0% |
| !!! | ACATTTTGTTATTTTTAACG+TGG | - | chr5.1:34085820-34085839 | None:intergenic | 20.0% |
| ! | AAAAGTTGCTTAATCAAGAT+AGG | + | chr5.1:34085255-34085274 | MS.gene071073:CDS | 25.0% |
| ! | ATAGAATTGAAGTCATTAGT+TGG | - | chr5.1:34085212-34085231 | None:intergenic | 25.0% |
| ! | ATCATAGCTATATGTAATTG+TGG | + | chr5.1:34085919-34085938 | MS.gene071073:intron | 25.0% |
| ! | CTTAATCAAGATAGGAAAAA+TGG | + | chr5.1:34085263-34085282 | MS.gene071073:CDS | 25.0% |
| ! | GTAAAATAAGGAAAAGAGTA+TGG | - | chr5.1:34084829-34084848 | None:intergenic | 25.0% |
| ! | TAAATTACACACACAATTGA+TGG | - | chr5.1:34086448-34086467 | None:intergenic | 25.0% |
| ! | TGACTTCAATTCTATCTTTA+AGG | + | chr5.1:34085217-34085236 | MS.gene071073:CDS | 25.0% |
| !! | ACATTTTAAATATGGAGAAG+TGG | - | chr5.1:34085700-34085719 | None:intergenic | 25.0% |
| !! | ATTTTAAATATGGAGAAGTG+GGG | - | chr5.1:34085698-34085717 | None:intergenic | 25.0% |
| !! | CATTTTAAATATGGAGAAGT+GGG | - | chr5.1:34085699-34085718 | None:intergenic | 25.0% |
| !! | TATCTTGATTAAGCAACTTT+TGG | - | chr5.1:34085256-34085275 | None:intergenic | 25.0% |
| !! | TCTCCAAGTATATCTTTTAT+AGG | - | chr5.1:34085531-34085550 | None:intergenic | 25.0% |
| !! | TTGATGATTGATAGAGTATT+TGG | - | chr5.1:34085107-34085126 | None:intergenic | 25.0% |
| !!! | ATTTTGGAACTCAATAATCA+AGG | + | chr5.1:34086268-34086287 | MS.gene071073:intron | 25.0% |
| !!! | CTTATGACTTGTTAATTGAA+TGG | - | chr5.1:34085144-34085163 | None:intergenic | 25.0% |
| AAAATGGTGCTTACATTTCT+AGG | + | chr5.1:34086127-34086146 | MS.gene071073:CDS | 30.0% | |
| ACAAAGTGCAAGTAACTATT+AGG | - | chr5.1:34085344-34085363 | None:intergenic | 30.0% | |
| AGAAGTAATGAAAAGAAGGT+AGG | - | chr5.1:34085409-34085428 | None:intergenic | 30.0% | |
| CAAAGTGCAAGTAACTATTA+GGG | - | chr5.1:34085343-34085362 | None:intergenic | 30.0% | |
| CAATCTATGATGAACAGAAA+AGG | + | chr5.1:34085972-34085991 | MS.gene071073:CDS | 30.0% | |
| ! | AACCTGTAATGAGGAATTTT+TGG | - | chr5.1:34084776-34084795 | None:intergenic | 30.0% |
| ! | AATTGATGGTCAAACATTGA+CGG | - | chr5.1:34086434-34086453 | None:intergenic | 30.0% |
| ! | ATTAGTTGTTGGTGGAAAAA+TGG | + | chr5.1:34086111-34086130 | MS.gene071073:CDS | 30.0% |
| ! | CAGCTCACACATTTTAAATA+TGG | - | chr5.1:34085708-34085727 | None:intergenic | 30.0% |
| !! | ACAGAAAAAAGCATCAGATA+AGG | + | chr5.1:34084989-34085008 | MS.gene071073:intron | 30.0% |
| !! | GGTTATTTCTTGCTTATGTT+AGG | + | chr5.1:34085940-34085959 | MS.gene071073:intron | 30.0% |
| !!! | TTAAGCAACTTTTGGAATTC+AGG | - | chr5.1:34085248-34085267 | None:intergenic | 30.0% |
| ACAGAAAAGGTCTTTGAACA+AGG | + | chr5.1:34085985-34086004 | MS.gene071073:CDS | 35.0% | |
| AGACTCTAAATTCAGTAGAG+TGG | - | chr5.1:34085175-34085194 | None:intergenic | 35.0% | |
| AGGTCTGAAGAATTAGTTGT+TGG | + | chr5.1:34086100-34086119 | MS.gene071073:CDS | 35.0% | |
| AGTCTTCCATAAAATGAACC+AGG | - | chr5.1:34085317-34085336 | None:intergenic | 35.0% | |
| CAGAAAAGGTCTTTGAACAA+GGG | + | chr5.1:34085986-34086005 | MS.gene071073:CDS | 35.0% | |
| CTGTGAGACTAGAATAGTAA+AGG | - | chr5.1:34086215-34086234 | None:intergenic | 35.0% | |
| CTTTACTATTCTAGTCTCAC+AGG | + | chr5.1:34086213-34086232 | MS.gene071073:CDS | 35.0% | |
| GTCTTCCATAAAATGAACCA+GGG | - | chr5.1:34085316-34085335 | None:intergenic | 35.0% | |
| TAACCTCCCATAAAAATGGA+AGG | - | chr5.1:34085293-34085312 | None:intergenic | 35.0% | |
| TCTGAAGAATTAGTTGTTGG+TGG | + | chr5.1:34086103-34086122 | MS.gene071073:CDS | 35.0% | |
| TGAAAGCCAGTGTAAACTAT+GGG | - | chr5.1:34085375-34085394 | None:intergenic | 35.0% | |
| TGCCAAAAATTCCTCATTAC+AGG | + | chr5.1:34084771-34084790 | MS.gene071073:CDS | 35.0% | |
| TTCTGTTCATCATAGATTGC+AGG | - | chr5.1:34085971-34085990 | None:intergenic | 35.0% | |
| TTGAAAGCCAGTGTAAACTA+TGG | - | chr5.1:34085376-34085395 | None:intergenic | 35.0% | |
| TTGACAGAGACAAATGCATA+GGG | + | chr5.1:34085650-34085669 | MS.gene071073:intron | 35.0% | |
| ! | AAAGTGTTTCATATGACTGG+AGG | + | chr5.1:34084730-34084749 | MS.gene071073:CDS | 35.0% |
| ! | CTTACATTTCTAGGAAGAAG+AGG | + | chr5.1:34086136-34086155 | MS.gene071073:CDS | 35.0% |
| ! | GAAACAACACCAAAGAGTAT+AGG | + | chr5.1:34085053-34085072 | MS.gene071073:CDS | 35.0% |
| !! | AGTATAGGCATTGCTGATTT+GGG | + | chr5.1:34085068-34085087 | MS.gene071073:CDS | 35.0% |
| !! | ATAGTTTACACTGGCTTTCA+AGG | + | chr5.1:34085375-34085394 | MS.gene071073:CDS | 35.0% |
| !! | GAGAAAGTGTTTCATATGAC+TGG | + | chr5.1:34084727-34084746 | MS.gene071073:CDS | 35.0% |
| !! | GGGTTTCCTTCCATTTTTAT+GGG | + | chr5.1:34085284-34085303 | MS.gene071073:CDS | 35.0% |
| !! | TAGTTTACACTGGCTTTCAA+GGG | + | chr5.1:34085376-34085395 | MS.gene071073:CDS | 35.0% |
| !! | TGGGTTTCCTTCCATTTTTA+TGG | + | chr5.1:34085283-34085302 | MS.gene071073:CDS | 35.0% |
| !! | TTTCCTTCCATTTTTATGGG+AGG | + | chr5.1:34085287-34085306 | MS.gene071073:CDS | 35.0% |
| !!! | TTTTTTCCCAAGTAGTCTAG+TGG | - | chr5.1:34085734-34085753 | None:intergenic | 35.0% |
| AGGAGAATGAACCTGTAATG+AGG | - | chr5.1:34084785-34084804 | None:intergenic | 40.0% | |
| AGGGTAACCTCCCATAAAAA+TGG | - | chr5.1:34085297-34085316 | None:intergenic | 40.0% | |
| ATGTGATAAAAGCCCTGAAG+TGG | + | chr5.1:34086021-34086040 | MS.gene071073:CDS | 40.0% | |
| ATTCCTCCCATAGTTTACAC+TGG | + | chr5.1:34085366-34085385 | MS.gene071073:CDS | 40.0% | |
| ATTCTTCAGACCTTGATCGA+AGG | - | chr5.1:34086093-34086112 | None:intergenic | 40.0% | |
| GTTGACAGAGACAAATGCAT+AGG | + | chr5.1:34085649-34085668 | MS.gene071073:intron | 40.0% | |
| TCAGCAATGCCTATACTCTT+TGG | - | chr5.1:34085065-34085084 | None:intergenic | 40.0% | |
| TGACAGAGACAAATGCATAG+GGG | + | chr5.1:34085651-34085670 | MS.gene071073:intron | 40.0% | |
| TGTCAACTGAGTTAAACCCA+CGG | - | chr5.1:34085636-34085655 | None:intergenic | 40.0% | |
| TGTTCATCATAGATTGCAGG+AGG | - | chr5.1:34085968-34085987 | None:intergenic | 40.0% | |
| TTCCTGAAACTGCTTAGAGT+AGG | - | chr5.1:34086056-34086075 | None:intergenic | 40.0% | |
| TTTCATATGACTGGAGGAGT+TGG | + | chr5.1:34084736-34084755 | MS.gene071073:CDS | 40.0% | |
| TTTCCTTGTTCCTTCGATCA+AGG | + | chr5.1:34086080-34086099 | MS.gene071073:CDS | 40.0% | |
| ! | ATTTTTATGGGAGGTTACCC+TGG | + | chr5.1:34085296-34085315 | MS.gene071073:CDS | 40.0% |
| ! | GAGTATAGGCATTGCTGATT+TGG | + | chr5.1:34085067-34085086 | MS.gene071073:CDS | 40.0% |
| ! | GGTTACCCTGGTTCATTTTA+TGG | + | chr5.1:34085308-34085327 | MS.gene071073:CDS | 40.0% |
| AAGCCAGTGTAAACTATGGG+AGG | - | chr5.1:34085372-34085391 | None:intergenic | 45.0% | |
| ACAGAGGCAACTCTTTCTTC+TGG | + | chr5.1:34086173-34086192 | MS.gene071073:CDS | 45.0% | |
| AGACCTTGATCGAAGGAACA+AGG | - | chr5.1:34086086-34086105 | None:intergenic | 45.0% | |
| AGAGACAAATGCATAGGGGT+CGG | + | chr5.1:34085655-34085674 | MS.gene071073:intron | 45.0% | |
| AGCCTACTCTAAGCAGTTTC+AGG | + | chr5.1:34086051-34086070 | MS.gene071073:CDS | 45.0% | |
| AGGCTTGAGAAACCACTTCA+GGG | - | chr5.1:34086036-34086055 | None:intergenic | 45.0% | |
| ATGAGTACTCTTAGTCTCCG+TGG | + | chr5.1:34085616-34085635 | MS.gene071073:intron | 45.0% | |
| CAGAGGCAACTCTTTCTTCT+GGG | + | chr5.1:34086174-34086193 | MS.gene071073:CDS | 45.0% | |
| TAGGCTTGAGAAACCACTTC+AGG | - | chr5.1:34086037-34086056 | None:intergenic | 45.0% | |
| TGAGTACTCTTAGTCTCCGT+GGG | + | chr5.1:34085617-34085636 | MS.gene071073:intron | 45.0% | |
| TTGCCTCTGTCAACATGTTC+AGG | - | chr5.1:34086163-34086182 | None:intergenic | 45.0% | |
| TTTCCCAAGTAGTCTAGTGG+CGG | - | chr5.1:34085731-34085750 | None:intergenic | 45.0% | |
| !! | GCTGATTTGGGATGTTCATC+TGG | + | chr5.1:34085080-34085099 | MS.gene071073:CDS | 45.0% |
| !!! | AATAATTTATCAAAATTTTA+AGG | - | chr5.1:34084851-34084870 | None:intergenic | 5.0% |
| GAGACAAATGCATAGGGGTC+GGG | + | chr5.1:34085656-34085675 | MS.gene071073:intron | 50.0% | |
| GGACCTGAACATGTTGACAG+AGG | + | chr5.1:34086157-34086176 | MS.gene071073:CDS | 50.0% | |
| ! | ATATGGAGAAGTGGGGTGTC+CGG | - | chr5.1:34085691-34085710 | None:intergenic | 50.0% |
| CTGCCGCCACTAGACTACTT+GGG | + | chr5.1:34085725-34085744 | MS.gene071073:intron | 55.0% | |
| ! | TATGGAGAAGTGGGGTGTCC+GGG | - | chr5.1:34085690-34085709 | None:intergenic | 55.0% |
| GCTGCCGCCACTAGACTACT+TGG | + | chr5.1:34085724-34085743 | MS.gene071073:intron | 60.0% | |
| ! | ATGGAGAAGTGGGGTGTCCG+GGG | - | chr5.1:34085689-34085708 | None:intergenic | 60.0% |
| AGGGGTCGGGTTTCGAACCC+CGG | + | chr5.1:34085669-34085688 | MS.gene071073:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 34084718 | 34086474 | 34084718 | ID=MS.gene071073 |
| chr5.1 | mRNA | 34084718 | 34086474 | 34084718 | ID=MS.gene071073.t1;Parent=MS.gene071073 |
| chr5.1 | exon | 34084718 | 34084792 | 34084718 | ID=MS.gene071073.t1.exon1;Parent=MS.gene071073.t1 |
| chr5.1 | CDS | 34084718 | 34084792 | 34084718 | ID=cds.MS.gene071073.t1;Parent=MS.gene071073.t1 |
| chr5.1 | exon | 34084993 | 34085397 | 34084993 | ID=MS.gene071073.t1.exon2;Parent=MS.gene071073.t1 |
| chr5.1 | CDS | 34084993 | 34085397 | 34084993 | ID=cds.MS.gene071073.t1;Parent=MS.gene071073.t1 |
| chr5.1 | exon | 34085962 | 34086234 | 34085962 | ID=MS.gene071073.t1.exon3;Parent=MS.gene071073.t1 |
| chr5.1 | CDS | 34085962 | 34086234 | 34085962 | ID=cds.MS.gene071073.t1;Parent=MS.gene071073.t1 |
| chr5.1 | exon | 34086472 | 34086474 | 34086472 | ID=MS.gene071073.t1.exon4;Parent=MS.gene071073.t1 |
| chr5.1 | CDS | 34086472 | 34086474 | 34086472 | ID=cds.MS.gene071073.t1;Parent=MS.gene071073.t1 |
| Gene Sequence |
| Protein sequence |
