AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene071279

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071279.t1 MTR_7g028970 97.795 907 19 1 1 907 1 906 0.0 1798
MS.gene071279.t1 MTR_4g109450 88.889 891 99 0 1 891 1 891 0.0 1625
MS.gene071279.t1 MTR_4g109450 88.725 816 92 0 1 816 1 816 0.0 1483
MS.gene071279.t1 MTR_7g012820 48.902 865 416 9 4 853 86 939 0.0 837
MS.gene071279.t1 MTR_7g012820 48.902 865 416 9 4 853 15 868 0.0 837
MS.gene071279.t1 MTR_6g013660 49.250 867 410 9 4 853 82 935 0.0 837
MS.gene071279.t1 MTR_3g106160 48.639 845 405 9 33 859 123 956 0.0 793
MS.gene071279.t1 MTR_2g099075 68.134 477 142 3 400 875 4 471 0.0 640
MS.gene071279.t1 MTR_8g100040 46.207 725 319 8 149 861 244 909 0.0 637
MS.gene071279.t1 MTR_3g498725 46.676 722 314 9 152 861 243 905 0.0 631
MS.gene071279.t1 MTR_3g102830 45.931 725 321 8 149 861 245 910 0.0 628
MS.gene071279.t1 MTR_3g098310 41.984 736 345 13 145 861 279 951 1.78e-180 547
MS.gene071279.t1 MTR_2g006950 65.238 420 106 6 461 878 1 382 1.35e-176 524
MS.gene071279.t1 MTR_2g006950 65.748 254 66 4 641 891 350 585 8.84e-97 316
MS.gene071279.t1 MTR_3g098310 43.007 572 255 11 145 707 279 788 1.52e-139 435
MS.gene071279.t1 MTR_3g461000 40.351 456 252 7 428 867 310 761 3.76e-103 339
MS.gene071279.t1 MTR_3g461000 34.663 401 245 8 17 404 16 412 1.63e-64 233
MS.gene071279.t1 MTR_7g096480 75.000 172 19 2 716 887 96 243 7.60e-76 248
MS.gene071279.t1 MTR_7g096480 58.594 128 20 1 530 657 1 95 2.21e-36 138
MS.gene071279.t1 MTR_6g048860 50.000 146 70 2 149 292 121 265 1.90e-40 153
MS.gene071279.t1 MTR_5g098360 67.368 95 30 1 558 652 74 167 2.78e-35 132
MS.gene071279.t1 MTR_1g076440 62.791 86 32 0 631 716 158 243 3.37e-30 122
MS.gene071279.t1 MTR_1614s0010 39.500 200 114 3 638 836 1 194 3.55e-29 115
MS.gene071279.t1 MTR_1g057150 26.117 291 182 9 17 279 23 308 2.56e-16 84.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene071279.t1 AT1G74310 81.348 890 160 3 1 890 1 884 0.0 1496
MS.gene071279.t1 AT1G74310 82.108 816 143 1 1 816 1 813 0.0 1389
MS.gene071279.t1 AT4G14670 65.303 660 187 5 1 658 1 620 0.0 836
MS.gene071279.t1 AT5G15450 48.376 862 424 9 4 853 80 932 0.0 825
MS.gene071279.t1 AT2G25140 47.910 885 436 10 1 869 83 958 0.0 808
MS.gene071279.t1 AT5G50920 45.890 730 320 10 152 869 245 911 0.0 630
MS.gene071279.t1 AT3G48870 45.493 710 316 7 164 861 247 897 0.0 618
MS.gene071279.t1 AT3G48870 45.493 710 316 7 164 861 278 928 0.0 617
MS.gene071279.t1 AT3G48870 45.493 710 316 7 164 861 278 928 0.0 617
MS.gene071279.t1 AT3G48870 45.493 710 316 7 164 861 278 928 0.0 617
MS.gene071279.t1 AT5G51070 44.203 690 308 11 164 835 271 901 1.18e-179 544
MS.gene071279.t1 AT4G14675 51.351 148 40 1 720 867 1 116 6.72e-44 156
MS.gene071279.t1 AT3G45450 45.198 177 77 4 176 350 151 309 2.77e-38 146
MS.gene071279.t1 AT3G52490 27.599 279 166 9 17 277 23 283 4.07e-16 83.6

Find 199 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACCTTTCTTTATCATTT+TGG 0.125585 7.1:+68457959 None:intergenic
CCCAAAACTGTCAGTGAAAA+TGG 0.214350 7.1:-68456532 MS.gene071279:CDS
TTGATAATGGAAGAGCTTTC+TGG 0.214612 7.1:+68459979 None:intergenic
CATCTCATAAGTGGACTTTC+AGG 0.227432 7.1:-68457135 MS.gene071279:CDS
AGCAATTGATCGGTTGATAT+TGG 0.248743 7.1:-68459905 MS.gene071279:CDS
GGGAAACTTGATCCTGTTAT+TGG 0.273106 7.1:-68459703 MS.gene071279:CDS
AATCTGGTGTGGCTGCTTCT+AGG 0.276407 7.1:-68459843 MS.gene071279:CDS
TCCAGCCTATTCAACAATTC+TGG 0.282474 7.1:+68457051 None:intergenic
TTCTCAAGCCACCTTCTAAT+TGG 0.289169 7.1:+68456736 None:intergenic
GTTGCATTCTCTTCCTTTCA+AGG 0.293230 7.1:+68458618 None:intergenic
TAGGTTATTTGCTTTGGATA+TGG 0.298718 7.1:-68459521 MS.gene071279:CDS
AAGAACAATCCTGTTATTAT+AGG 0.300913 7.1:-68459631 MS.gene071279:CDS
TGCTTCTAGGGTTAAATTAG+AGG 0.305282 7.1:-68459830 MS.gene071279:CDS
TTTGAAGCATTGAAAACTTA+TGG 0.313892 7.1:-68459748 MS.gene071279:CDS
TTCCTATTCCTTGGTCCAAC+TGG 0.314236 7.1:-68457814 MS.gene071279:CDS
GATGAAATTCATCTTGTTCT+CGG 0.335841 7.1:-68459394 MS.gene071279:CDS
ACTAAATCAATTGCCTTATC+AGG 0.337759 7.1:+68458701 None:intergenic
AGTCGCTGGTACTGAGTATA+GGG 0.341170 7.1:-68459491 MS.gene071279:CDS
GCAATTGATCGGTTGATATT+GGG 0.345703 7.1:-68459904 MS.gene071279:CDS
AGGTTATTTGCTTTGGATAT+GGG 0.347039 7.1:-68459520 MS.gene071279:CDS
TCTTCATCGCGTCCAATAAC+AGG 0.361690 7.1:+68459691 None:intergenic
TGATGTTAGGTTATTTGCTT+TGG 0.368946 7.1:-68459527 MS.gene071279:CDS
CTAGTAATCTTGCTGATGTT+AGG 0.368970 7.1:-68459540 MS.gene071279:CDS
GCAGACTTGTTGACAGAATC+TGG 0.376822 7.1:-68459859 MS.gene071279:CDS
TCTTTCAATGACTTTGATAA+TGG 0.377205 7.1:+68459966 None:intergenic
GTGAGATCGAGAGCTGGTTT+AGG 0.377227 7.1:-68457862 MS.gene071279:CDS
ATATCGTAGGTCTGCAGCTC+TGG 0.383932 7.1:+68458137 None:intergenic
GGAAGTGGAACTTCATGCTT+TGG 0.387740 7.1:-68458594 MS.gene071279:CDS
TTTATTGCTGTGTAGGTGTA+TGG 0.388589 7.1:-68456766 MS.gene071279:intron
CCTGGCTCACCTATAATAAC+AGG 0.397627 7.1:+68459622 None:intergenic
ACTGGTTCCTTCCTATTCCT+TGG 0.398409 7.1:-68457823 MS.gene071279:CDS
TCAGGCCAGAATTGTTGAAT+AGG 0.402278 7.1:-68457056 MS.gene071279:CDS
CGAAGAATACTAATGGTATC+AGG 0.403438 7.1:+68459196 None:intergenic
CACCGACATTGGAAATTGCT+TGG 0.405651 7.1:+68460088 None:intergenic
ATGTCTAGTCGGTACATAAC+TGG 0.411033 7.1:-68459100 MS.gene071279:intron
CAACAACACTTGATGAATAT+AGG 0.419042 7.1:-68459288 MS.gene071279:CDS
TCAAGGTTGTCAATTTCCTC+AGG 0.419934 7.1:+68458635 None:intergenic
CTAACATCAGCAAGATTACT+AGG 0.421459 7.1:+68459541 None:intergenic
TAGTCGCTGGTACTGAGTAT+AGG 0.425529 7.1:-68459492 MS.gene071279:CDS
ATCTGGTGTGGCTGCTTCTA+GGG 0.427152 7.1:-68459842 MS.gene071279:CDS
ATTCATCTTGTTCTCGGTGC+CGG 0.428777 7.1:-68459388 MS.gene071279:CDS
CTCTATCTCACGAGCAATTG+AGG 0.446646 7.1:-68457008 MS.gene071279:CDS
CTCAATTGCTCGTGAGATAG+AGG 0.447296 7.1:+68457009 None:intergenic
TAAAATCCACAGTTCTTCCT+TGG 0.449120 7.1:+68457199 None:intergenic
CAGCGACAGCTTTAACTGCT+TGG 0.449855 7.1:+68457893 None:intergenic
TTGGCTAAGAGAATAGTTAG+AGG 0.451148 7.1:-68459571 MS.gene071279:CDS
GGTCATTGGCGACGATGAAA+TGG 0.452038 7.1:-68456503 MS.gene071279:CDS
ACTTTAATTTCTGATCTCAA+TGG 0.452305 7.1:-68460120 MS.gene071279:CDS
TAAAGAAAGGTTGGTTGGAC+TGG 0.454280 7.1:-68457950 MS.gene071279:CDS
GAAAATCTTCGCAGTAAAGA+AGG 0.454419 7.1:-68459805 MS.gene071279:CDS
TAGTCCACGAAGAATACTAA+TGG 0.455621 7.1:+68459189 None:intergenic
ATGCTCGGCGCCGAGGTTTG+AGG 0.456789 7.1:+68457155 None:intergenic
TGAAAGGAAGAGAATGCAAC+TGG 0.457893 7.1:-68458615 MS.gene071279:CDS
TATACCAAATCACTTCCCTT+TGG 0.459313 7.1:+68456634 None:intergenic
ACTTGATATGTCCGAATACA+TGG 0.460527 7.1:-68457722 MS.gene071279:CDS
TGACGAAGGTGGACAATTAA+CGG 0.460785 7.1:-68457337 MS.gene071279:CDS
GAAGAGAATGCAACTGGAAG+TGG 0.463753 7.1:-68458609 MS.gene071279:CDS
ACAACCTCAGCTATTTGATC+TGG 0.466362 7.1:+68458018 None:intergenic
GCTGTCTATGATGCTTATAA+AGG 0.467051 7.1:-68456698 MS.gene071279:CDS
ATTTGAAAGGAGGTTTCAAC+AGG 0.467761 7.1:-68459242 MS.gene071279:CDS
TGGTCCAAAGGGAAGTGATT+TGG 0.469216 7.1:-68456638 MS.gene071279:CDS
AGAGCTCCTCTTTGCACTAC+AGG 0.471282 7.1:-68458184 MS.gene071279:CDS
GCCAGAATTGTTGAATAGGC+TGG 0.473395 7.1:-68457052 MS.gene071279:CDS
AGAGCTGCAGACCTACGATA+TGG 0.473492 7.1:-68458135 MS.gene071279:CDS
AATCTTGAAGGTAGCACTGA+TGG 0.474434 7.1:-68458081 MS.gene071279:CDS
GGGATTGTTGATGCTGAAAC+TGG 0.476859 7.1:-68456592 MS.gene071279:CDS
CACCAGTTGGACCAAGGAAT+AGG 0.477910 7.1:+68457812 None:intergenic
ATAGGGGACAATTTGAAGAA+AGG 0.481222 7.1:-68459474 MS.gene071279:CDS
TAGGCCAAAATGATAAAGAA+AGG 0.482063 7.1:-68457963 MS.gene071279:CDS
AGGGCGTCGTCTTCCTGATA+AGG 0.483337 7.1:-68458714 MS.gene071279:CDS
ACTTCATGCTTTGGAGAAAG+AGG 0.483359 7.1:-68458585 MS.gene071279:CDS
AATGATAAAGAAAGGTTGGT+TGG 0.485880 7.1:-68457955 MS.gene071279:CDS
AGAAAACTAGCAATAAGTTC+AGG 0.485939 7.1:-68460177 MS.gene071279:CDS
CACAGTTCTTCCTTGGCCAT+CGG 0.490236 7.1:+68457206 None:intergenic
TCTGGTACATGCTGTGGTGG+AGG 0.490797 7.1:+68459997 None:intergenic
CAAGCAGTTAAAGCTGTCGC+TGG 0.493333 7.1:-68457892 MS.gene071279:CDS
ACTGTAAGGCCTTCTCCTTA+CGG 0.493558 7.1:+68457311 None:intergenic
CTCGGTGCCGGTCGATGTCA+AGG 0.494184 7.1:-68459376 MS.gene071279:CDS
GAAAATGGATATGAGGTCAT+TGG 0.495897 7.1:-68456517 MS.gene071279:CDS
AACAGCTGTTGTTGAAGGGT+TGG 0.496393 7.1:-68459590 MS.gene071279:CDS
AGTATAGCAAAGAGAAAGAG+AGG 0.498177 7.1:-68458242 MS.gene071279:CDS
ATATAGGCAATATGTTGAAA+AGG 0.498900 7.1:-68459272 MS.gene071279:CDS
GGAAGACCACAACAACCAAC+TGG 0.499543 7.1:-68457841 MS.gene071279:CDS
TTGCTATACTTCATCTTCAG+AGG 0.500208 7.1:+68458255 None:intergenic
AGGAAATTGACAACCTTGAA+AGG 0.501535 7.1:-68458631 MS.gene071279:CDS
AGAGACTTGGTTGAACAAGC+AGG 0.501662 7.1:-68459724 MS.gene071279:CDS
CCTGTTATTATAGGTGAGCC+AGG 0.503359 7.1:-68459622 MS.gene071279:CDS
GTTGATATTGGGAATTCTTG+AGG 0.506924 7.1:-68459893 MS.gene071279:CDS
GACAATTAACGGAAGCCGTA+AGG 0.509021 7.1:-68457326 MS.gene071279:CDS
GATACCATTAGTATTCTTCG+TGG 0.509622 7.1:-68459193 MS.gene071279:CDS
AGATTGATCGGTGCACCACC+AGG 0.509852 7.1:-68457682 MS.gene071279:CDS
TTCCAAGCAATTTCCAATGT+CGG 0.510415 7.1:-68460090 MS.gene071279:CDS
CCAAAATGATAAAGAAAGGT+TGG 0.513032 7.1:-68457959 MS.gene071279:CDS
GACGCGATGAAGAGATAAGA+AGG 0.515086 7.1:-68459681 MS.gene071279:CDS
TAAAGTGGATGCAAGGTGTA+CGG 0.516884 7.1:+68460137 None:intergenic
CTAATGGTATCAGGCACACT+AGG 0.517122 7.1:+68459205 None:intergenic
TTCCTTGGTCCAACTGGTGT+CGG 0.517288 7.1:-68457808 MS.gene071279:CDS
AAGCAGTTAAAGCTGTCGCT+GGG 0.520029 7.1:-68457891 MS.gene071279:CDS
AAGGAACCAGTTGGTTGTTG+TGG 0.521039 7.1:+68457835 None:intergenic
TGCTTCAAGTCTTAGATGAC+GGG 0.522426 7.1:-68457236 MS.gene071279:CDS
TAAACGAGTCACTGGTATAC+CGG 0.522890 7.1:+68457984 None:intergenic
ACAATTTGAAGAAAGGTTGA+AGG 0.526361 7.1:-68459467 MS.gene071279:CDS
GGTATACCAGTGACTCGTTT+AGG 0.529289 7.1:-68457982 MS.gene071279:CDS
AAAGTGGATGCAAGGTGTAC+GGG 0.529432 7.1:+68460138 None:intergenic
ATTGAGATCAGAAATTAAAG+TGG 0.531542 7.1:+68460122 None:intergenic
CATTGATCCTTGACATCGAC+CGG 0.533522 7.1:+68459369 None:intergenic
GGTTGCAAGGTTGCAAATGA+AGG 0.533779 7.1:-68456983 MS.gene071279:CDS
AAAGAAAGGTTGGTTGGACT+GGG 0.533978 7.1:-68457949 MS.gene071279:CDS
CGGTCGATGTCAAGGATCAA+TGG 0.534003 7.1:-68459368 MS.gene071279:CDS
GGTAAAACAGCTGTTGTTGA+AGG 0.536011 7.1:-68459595 MS.gene071279:CDS
GATATGGGAGCGTTAGTCGC+TGG 0.541820 7.1:-68459505 MS.gene071279:CDS
GCAAGTATATAATCTAGTGC+TGG 0.545509 7.1:+68456910 None:intergenic
ACACTCATTTAGCAATTGAT+CGG 0.545750 7.1:-68459915 MS.gene071279:CDS
GGCGCCGAGCATCTCATAAG+TGG 0.545997 7.1:-68457144 MS.gene071279:CDS
ATTATAGGTGAGCCAGGTGT+TGG 0.546216 7.1:-68459616 MS.gene071279:CDS
TGTCAGTGAAAATGGATATG+AGG 0.547893 7.1:-68456524 MS.gene071279:CDS
AAAAGGATGCTGCATTTGAA+AGG 0.550728 7.1:-68459255 MS.gene071279:CDS
TACTCCGTTTCAAGATTGAT+CGG 0.550798 7.1:-68457694 MS.gene071279:CDS
AGTGGAAGATGCTGAAGGGA+AGG 0.551183 7.1:-68459431 MS.gene071279:CDS
GTATACCGTGTGGAAAAGAA+TGG 0.554197 7.1:-68456616 MS.gene071279:CDS
AGATTGCACAGTAGAGTTGT+GGG 0.556888 7.1:-68457922 MS.gene071279:CDS
TATATAATCTAGTGCTGGAT+CGG 0.559002 7.1:+68456915 None:intergenic
TGACGAATCTGCACGTTCCG+TGG 0.559545 7.1:-68460064 MS.gene071279:CDS
CGGTAAAACAGAACTTGCTA+AGG 0.560192 7.1:-68457788 MS.gene071279:CDS
AGGATGCTGCATTTGAAAGG+AGG 0.560849 7.1:-68459252 MS.gene071279:CDS
AAGAGATAAGAAGGGTTGTG+AGG 0.561006 7.1:-68459672 MS.gene071279:CDS
TAACGGAAGCCGTAAGGAGA+AGG 0.562264 7.1:-68457320 MS.gene071279:CDS
CAGATTGCACAGTAGAGTTG+TGG 0.563129 7.1:-68457923 MS.gene071279:CDS
CTGCTTCAAGTCTTAGATGA+CGG 0.564051 7.1:-68457237 MS.gene071279:CDS
TGCTGAGAGAGGAATTGCAT+TGG 0.564643 7.1:-68456944 MS.gene071279:CDS
AAGAAGTGGAAGATGCTGAA+GGG 0.565725 7.1:-68459435 MS.gene071279:CDS
TGCATTGATGCTGGTCCAAA+GGG 0.567519 7.1:-68456649 MS.gene071279:CDS
CAAGCAATTTCCAATGTCGG+TGG 0.569212 7.1:-68460087 MS.gene071279:CDS
GAAAACTTATGGTAGAGACT+TGG 0.572735 7.1:-68459737 MS.gene071279:CDS
TGCACCGATCAATCTTGAAA+CGG 0.572883 7.1:+68457690 None:intergenic
CAAAGTCATTGAAAGAGCAC+AGG 0.574398 7.1:-68459959 MS.gene071279:CDS
GGCAATTGATTTAGTTGACG+AGG 0.575315 7.1:-68458693 MS.gene071279:CDS
AGATTCGTCACCACCGACAT+TGG 0.576451 7.1:+68460077 None:intergenic
ATCTTGAAGGTAGCACTGAT+GGG 0.576475 7.1:-68458080 MS.gene071279:CDS
CGTGGACAACTTAGATGCAT+CGG 0.576960 7.1:-68459313 MS.gene071279:CDS
CTTCGATAATGAAAATCAGA+TGG 0.579605 7.1:-68457749 MS.gene071279:CDS
ACAACTGTGTGCATTGATGC+TGG 0.580308 7.1:-68456658 MS.gene071279:CDS
CAGAAATTAAAGTGGATGCA+AGG 0.580621 7.1:+68460130 None:intergenic
TTCAAACCTATGCTTGCTCG+TGG 0.581065 7.1:-68459331 MS.gene071279:CDS
GAGGTTGTAAGCCGATGGAC+CGG 0.583520 7.1:-68458003 MS.gene071279:CDS
AGTTGTCCACGAGCAAGCAT+AGG 0.583829 7.1:+68459325 None:intergenic
TAGCTGAGGTTGTAAGCCGA+TGG 0.585089 7.1:-68458008 MS.gene071279:CDS
AGCAATTGAGGAAGGTTGCA+AGG 0.587032 7.1:-68456996 MS.gene071279:CDS
AAGTCCACTTATGAGATGCT+CGG 0.587737 7.1:+68457140 None:intergenic
TTATGAGATGCTCGGCGCCG+AGG 0.588366 7.1:+68457148 None:intergenic
GAGCTTTCTGGTACATGCTG+TGG 0.588543 7.1:+68459991 None:intergenic
CTTTCTGGTACATGCTGTGG+TGG 0.588981 7.1:+68459994 None:intergenic
ATATGGTGCAATTGAAGAGG+TGG 0.594534 7.1:-68458118 MS.gene071279:CDS
AGATGAGAACTTGATGCTGA+CGG 0.600025 7.1:-68458052 MS.gene071279:CDS
TTGATGCTGACGGAAACTGT+TGG 0.601313 7.1:-68458042 MS.gene071279:CDS
AAAATCTTCGCAGTAAAGAA+GGG 0.606540 7.1:-68459804 MS.gene071279:CDS
ATTATCATGACCTCAAACCT+CGG 0.606693 7.1:-68457165 MS.gene071279:CDS
TACCGTGTGGAAAAGAATGG+AGG 0.607054 7.1:-68456613 MS.gene071279:CDS
ATCTCACGAGCAATTGAGGA+AGG 0.608084 7.1:-68457004 MS.gene071279:CDS
GTGCATTGATGCTGGTCCAA+AGG 0.609295 7.1:-68456650 MS.gene071279:CDS
AAAGAAGTGGAAGATGCTGA+AGG 0.609450 7.1:-68459436 MS.gene071279:CDS
CAGCCTCCTGTAGTGCAAAG+AGG 0.611133 7.1:+68458178 None:intergenic
ACCGTGTGGAAAAGAATGGA+GGG 0.614544 7.1:-68456612 MS.gene071279:CDS
TGTGGTGGAGGCTGTTGAGT+AGG 0.617546 7.1:+68460009 None:intergenic
GCTAGTCGTCTTGCTGAGAG+AGG 0.621064 7.1:-68456955 MS.gene071279:CDS
GGGAGATTAACCGATGGCCA+AGG 0.621274 7.1:-68457216 MS.gene071279:CDS
TACCGACACCAGTTGGACCA+AGG 0.623035 7.1:+68457806 None:intergenic
GCTGTAGTGAGATCGAGAGC+TGG 0.629192 7.1:-68457868 MS.gene071279:CDS
ACGATATGGTGCAATTGAAG+AGG 0.629693 7.1:-68458121 MS.gene071279:CDS
TTGCAGCTCAGATGTCTAGT+CGG 0.630610 7.1:-68459111 MS.gene071279:CDS
TCACTGGTATACCGGTCCAT+CGG 0.631048 7.1:+68457992 None:intergenic
CTTCAATTGCACCATATCGT+AGG 0.632100 7.1:+68458124 None:intergenic
GAGACTTGGTTGAACAAGCA+GGG 0.632899 7.1:-68459723 MS.gene071279:CDS
GTAAAACAGCTGTTGTTGAA+GGG 0.633556 7.1:-68459594 MS.gene071279:CDS
TCGATCGCGAGCAACTTGCA+TGG 0.634377 7.1:+68457104 None:intergenic
TATATTGGACATGACGAAGG+TGG 0.635832 7.1:-68457348 MS.gene071279:CDS
AGGTATATTGGACATGACGA+AGG 0.636676 7.1:-68457351 MS.gene071279:CDS
GAGCTGCAACAACAATTGCA+CGG 0.636905 7.1:+68459125 None:intergenic
TCATGCTTTGGAGAAAGAGG+AGG 0.637227 7.1:-68458582 MS.gene071279:CDS
ATGGTGCTAGACCAATTAGA+AGG 0.648738 7.1:-68456747 MS.gene071279:CDS
ACGCGATGAAGAGATAAGAA+GGG 0.655851 7.1:-68459680 MS.gene071279:CDS
AGTTGGACCAAGGAATAGGA+AGG 0.661631 7.1:+68457816 None:intergenic
CACTACAGGAGGCTGAGAGG+CGG 0.665779 7.1:-68458170 MS.gene071279:CDS
AGGAATAGGAAGGAACCAGT+TGG 0.666288 7.1:+68457826 None:intergenic
GTGCTAGACCAATTAGAAGG+TGG 0.668833 7.1:-68456744 MS.gene071279:CDS
GCTCCTCTTTGCACTACAGG+AGG 0.670257 7.1:-68458181 MS.gene071279:CDS
CTTGTTGACAGAATCTGGTG+TGG 0.670357 7.1:-68459854 MS.gene071279:CDS
TCAACTTGACAGTCAGCCTG+AGG 0.670885 7.1:-68458651 MS.gene071279:CDS
TTGCACTACAGGAGGCTGAG+AGG 0.672526 7.1:-68458173 MS.gene071279:CDS
AAGTGATTTGGTATACCGTG+TGG 0.679627 7.1:-68456626 MS.gene071279:CDS
AGCAGTTAAAGCTGTCGCTG+GGG 0.679969 7.1:-68457890 MS.gene071279:CDS
GTCGCTGGTACTGAGTATAG+GGG 0.684590 7.1:-68459490 MS.gene071279:CDS
GATTGATCGGTGCACCACCA+GGG 0.688237 7.1:-68457681 MS.gene071279:intron
CGATGGCCAAGGAAGAACTG+TGG 0.695583 7.1:-68457205 MS.gene071279:CDS
TGGACCAGATCAAATAGCTG+AGG 0.699839 7.1:-68458022 MS.gene071279:CDS
AATACAATATCTTACCCTGG+TGG 0.701412 7.1:+68457667 None:intergenic
CAGGAAGCACAGAAGTCACG+CGG 0.704887 7.1:-68459940 MS.gene071279:CDS
GATGACGGGAGATTAACCGA+TGG 0.733986 7.1:-68457222 MS.gene071279:CDS
AAGGTGGCTTGAGAAGAATG+TGG 0.734759 7.1:-68456728 MS.gene071279:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAAATTAATACGTT+TGG - chr7.1:68459126-68459145 MS.gene071279:CDS 10.0%
!! AAAAAAAAATGTTATATTTG+AGG - chr7.1:68459896-68459915 MS.gene071279:CDS 10.0%
!! AAAAAAAATGTTATATTTGA+GGG - chr7.1:68459897-68459916 MS.gene071279:CDS 10.0%
!! AAAAAAATGTTATATTTGAG+GGG - chr7.1:68459898-68459917 MS.gene071279:CDS 15.0%
!! AAAAATTAAAAGAAAACTGA+TGG + chr7.1:68457679-68457698 None:intergenic 15.0%
!! AATGAGATAATAAATAGTTA+CGG - chr7.1:68457808-68457827 MS.gene071279:CDS 15.0%
!! TCTTTAAATATTTCAAATGT+CGG - chr7.1:68459175-68459194 MS.gene071279:CDS 15.0%
!!! ACAAGATTTATTGATTTTAT+TGG - chr7.1:68457869-68457888 MS.gene071279:CDS 15.0%
!! AAGTCTAAACAAGTATTAAT+AGG + chr7.1:68459284-68459303 None:intergenic 20.0%
!! AATATTGCATTACACTTTAA+AGG + chr7.1:68457741-68457760 None:intergenic 20.0%
!! AATGCAATAAAAAATCTTGA+AGG - chr7.1:68458630-68458649 MS.gene071279:CDS 20.0%
!! ATCTTAAAACAGAAGTTAAA+AGG - chr7.1:68457901-68457920 MS.gene071279:CDS 20.0%
!! ATTAGAATAAAGGAGAATAA+TGG + chr7.1:68458392-68458411 None:intergenic 20.0%
!! GAATAAAACTAAAAAATGAG+TGG - chr7.1:68458319-68458338 MS.gene071279:intron 20.0%
!! GACATCAATAATTAGAATAA+AGG + chr7.1:68458402-68458421 None:intergenic 20.0%
!! TTTATCTCCAAGTATAATTT+AGG + chr7.1:68459109-68459128 None:intergenic 20.0%
!! TTTGTTGAGATTTATTTAAC+CGG - chr7.1:68459209-68459228 MS.gene071279:CDS 20.0%
!!! ATTTTGATTCAAATACCAAA+TGG - chr7.1:68460167-68460186 MS.gene071279:CDS 20.0%
!!! TGAGTTTTTCTTTTAACTAA+GGG - chr7.1:68458207-68458226 MS.gene071279:CDS 20.0%
!!! TTGAGTTTTTCTTTTAACTA+AGG - chr7.1:68458206-68458225 MS.gene071279:CDS 20.0%
! AAAAATACAATATCTTACCC+TGG + chr7.1:68459062-68459081 None:intergenic 25.0%
! AAAACAGAAGTTAAAAGGAA+TGG - chr7.1:68457906-68457925 MS.gene071279:CDS 25.0%
! AAGAACAATCCTGTTATTAT+AGG - chr7.1:68457092-68457111 MS.gene071279:CDS 25.0%
! ATAAACCAAATTTCAAATGC+CGG + chr7.1:68459231-68459250 None:intergenic 25.0%
! ATATAGGCAATATGTTGAAA+AGG - chr7.1:68457451-68457470 MS.gene071279:intron 25.0%
! ATTGAGATCAGAAATTAAAG+TGG + chr7.1:68456604-68456623 None:intergenic 25.0%
! ATTTATGTATTGAATGTGGA+TGG - chr7.1:68457936-68457955 MS.gene071279:CDS 25.0%
! GAGTATTTATGTATTGAATG+TGG - chr7.1:68457932-68457951 MS.gene071279:CDS 25.0%
! GGACTAAAAGAAAAATATGA+GGG - chr7.1:68457551-68457570 MS.gene071279:intron 25.0%
! GTAAAAGCCTAAATTATACT+TGG - chr7.1:68459099-68459118 MS.gene071279:intron 25.0%
! TAAAACTAAAAAATGAGTGG+TGG - chr7.1:68458322-68458341 MS.gene071279:intron 25.0%
! TCTTTCAATGACTTTGATAA+TGG + chr7.1:68456760-68456779 None:intergenic 25.0%
! TGGACTAAAAGAAAAATATG+AGG - chr7.1:68457550-68457569 MS.gene071279:intron 25.0%
!! ACTTTAATTTCTGATCTCAA+TGG - chr7.1:68456603-68456622 MS.gene071279:CDS 25.0%
!! TCGCATTTTTCGTTTAAATA+TGG + chr7.1:68459931-68459950 None:intergenic 25.0%
!!! AAATGAGTTTTCAGGTATAT+TGG - chr7.1:68459360-68459379 MS.gene071279:CDS 25.0%
!!! TGATTATATAAGAGCACTTA+CGG + chr7.1:68459853-68459872 None:intergenic 25.0%
!!! TTATTGTGGTTTTACTAACA+TGG - chr7.1:68457962-68457981 MS.gene071279:CDS 25.0%
!!! TTCTGTTTTGTGTTTGTTAA+GGG - chr7.1:68457990-68458009 MS.gene071279:CDS 25.0%
!!! TTGAAGTAAAAAAGCATTTC+AGG - chr7.1:68459649-68459668 MS.gene071279:CDS 25.0%
!!! TTGTTTTAAAACTCTTTCCA+CGG + chr7.1:68456679-68456698 None:intergenic 25.0%
!!! TTTCTGTTTTGTGTTTGTTA+AGG - chr7.1:68457989-68458008 MS.gene071279:CDS 25.0%
!!! TTTGAAGCATTGAAAACTTA+TGG - chr7.1:68456975-68456994 MS.gene071279:CDS 25.0%
!!! TTTTTCTTTTAACTAAGGGT+TGG - chr7.1:68458211-68458230 MS.gene071279:CDS 25.0%
AAAATCTTCGCAGTAAAGAA+GGG - chr7.1:68456919-68456938 MS.gene071279:CDS 30.0%
AAATTAATACGTTTGGTCCA+TGG - chr7.1:68459133-68459152 MS.gene071279:CDS 30.0%
ACAATTTGAAGAAAGGTTGA+AGG - chr7.1:68457256-68457275 MS.gene071279:CDS 30.0%
ACACTCATTTAGCAATTGAT+CGG - chr7.1:68456808-68456827 MS.gene071279:intron 30.0%
ACTAAATCAATTGCCTTATC+AGG + chr7.1:68458025-68458044 None:intergenic 30.0%
AGAAAACTAGCAATAAGTTC+AGG - chr7.1:68456546-68456565 MS.gene071279:CDS 30.0%
ATGGAAAAGAGCTACAAATT+TGG - chr7.1:68459152-68459171 MS.gene071279:CDS 30.0%
CAACAACACTTGATGAATAT+AGG - chr7.1:68457435-68457454 MS.gene071279:intron 30.0%
CCAAAATGATAAAGAAAGGT+TGG - chr7.1:68458764-68458783 MS.gene071279:intron 30.0%
CTAATTATTGATGTCATTGC+AGG - chr7.1:68458407-68458426 MS.gene071279:intron 30.0%
CTTCGATAATGAAAATCAGA+TGG - chr7.1:68458974-68458993 MS.gene071279:intron 30.0%
GATGAAATTCATCTTGTTCT+CGG - chr7.1:68457329-68457348 MS.gene071279:CDS 30.0%
TAGGCCAAAATGATAAAGAA+AGG - chr7.1:68458760-68458779 MS.gene071279:intron 30.0%
TGATGTTAGGTTATTTGCTT+TGG - chr7.1:68457196-68457215 MS.gene071279:CDS 30.0%
! AAATTTGTAGCTCTTTTCCA+TGG + chr7.1:68459153-68459172 None:intergenic 30.0%
! AATGATAAAGAAAGGTTGGT+TGG - chr7.1:68458768-68458787 MS.gene071279:intron 30.0%
! AATGTGGATGGTTTTTATTG+TGG - chr7.1:68457948-68457967 MS.gene071279:CDS 30.0%
! ACTTTTTGATGAAGTTGAGA+AGG - chr7.1:68459440-68459459 MS.gene071279:CDS 30.0%
! AGGTTATTTGCTTTGGATAT+GGG - chr7.1:68457203-68457222 MS.gene071279:CDS 30.0%
! CCAACCTTTCTTTATCATTT+TGG + chr7.1:68458767-68458786 None:intergenic 30.0%
! TAGGTTATTTGCTTTGGATA+TGG - chr7.1:68457202-68457221 MS.gene071279:CDS 30.0%
! TATATAATCTAGTGCTGGAT+CGG + chr7.1:68459811-68459830 None:intergenic 30.0%
! TGATTGTGAAATGAGTTTTC+AGG - chr7.1:68459352-68459371 MS.gene071279:CDS 30.0%
! TTTAACCGGCATTTGAAATT+TGG - chr7.1:68459223-68459242 MS.gene071279:CDS 30.0%
!! ACTATGTTTTATTGCTGTGT+AGG - chr7.1:68459950-68459969 MS.gene071279:CDS 30.0%
!! GAGAATAATGGATGTTACAA+AGG + chr7.1:68458380-68458399 None:intergenic 30.0%
!! GATTATATAAGAGCACTTAC+GGG + chr7.1:68459852-68459871 None:intergenic 30.0%
!! GGAGTATTTTTCCATGTATT+CGG + chr7.1:68459015-68459034 None:intergenic 30.0%
!! TCAAAAAGTACTAGACTGTA+AGG + chr7.1:68459429-68459448 None:intergenic 30.0%
!!! GTTTTGTTTGTAAACTTTCG+TGG + chr7.1:68456504-68456523 None:intergenic 30.0%
AAAAGGATGCTGCATTTGAA+AGG - chr7.1:68457468-68457487 MS.gene071279:intron 35.0%
AATACAATATCTTACCCTGG+TGG + chr7.1:68459059-68459078 None:intergenic 35.0%
ACAGAAGTTAAAAGGAATGG+AGG - chr7.1:68457909-68457928 MS.gene071279:CDS 35.0%
ACTTGATATGTCCGAATACA+TGG - chr7.1:68459001-68459020 MS.gene071279:intron 35.0%
AGGAAATTGACAACCTTGAA+AGG - chr7.1:68458092-68458111 MS.gene071279:CDS 35.0%
AGTATAGCAAAGAGAAAGAG+AGG - chr7.1:68458481-68458500 MS.gene071279:intron 35.0%
ATAGGGGACAATTTGAAGAA+AGG - chr7.1:68457249-68457268 MS.gene071279:CDS 35.0%
ATTATCATGACCTCAAACCT+CGG - chr7.1:68459558-68459577 MS.gene071279:CDS 35.0%
ATTTGAAAGGAGGTTTCAAC+AGG - chr7.1:68457481-68457500 MS.gene071279:intron 35.0%
CAGAAATTAAAGTGGATGCA+AGG + chr7.1:68456596-68456615 None:intergenic 35.0%
CAGAAGTTAAAAGGAATGGA+GGG - chr7.1:68457910-68457929 MS.gene071279:CDS 35.0%
CGAAGAATACTAATGGTATC+AGG + chr7.1:68457530-68457549 None:intergenic 35.0%
CTAACATCAGCAAGATTACT+AGG + chr7.1:68457185-68457204 None:intergenic 35.0%
CTAGTAATCTTGCTGATGTT+AGG - chr7.1:68457183-68457202 MS.gene071279:CDS 35.0%
GAAAAATATGAGGGTCATCA+TGG - chr7.1:68457560-68457579 MS.gene071279:intron 35.0%
GAAAACTTATGGTAGAGACT+TGG - chr7.1:68456986-68457005 MS.gene071279:CDS 35.0%
GAAAATCTTCGCAGTAAAGA+AGG - chr7.1:68456918-68456937 MS.gene071279:CDS 35.0%
GAAAATGGATATGAGGTCAT+TGG - chr7.1:68460206-68460225 MS.gene071279:CDS 35.0%
GATACCATTAGTATTCTTCG+TGG - chr7.1:68457530-68457549 MS.gene071279:intron 35.0%
GCAAGTATATAATCTAGTGC+TGG + chr7.1:68459816-68459835 None:intergenic 35.0%
GCTGTCTATGATGCTTATAA+AGG - chr7.1:68460025-68460044 MS.gene071279:CDS 35.0%
GTAAAACAGCTGTTGTTGAA+GGG - chr7.1:68457129-68457148 MS.gene071279:CDS 35.0%
GTTGATATTGGGAATTCTTG+AGG - chr7.1:68456830-68456849 MS.gene071279:intron 35.0%
TAAAATCCACAGTTCTTCCT+TGG + chr7.1:68459527-68459546 None:intergenic 35.0%
TACTCCGTTTCAAGATTGAT+CGG - chr7.1:68459029-68459048 MS.gene071279:intron 35.0%
TAGTCCACGAAGAATACTAA+TGG + chr7.1:68457537-68457556 None:intergenic 35.0%
TATACCAAATCACTTCCCTT+TGG + chr7.1:68460092-68460111 None:intergenic 35.0%
TGTCAGTGAAAATGGATATG+AGG - chr7.1:68460199-68460218 MS.gene071279:CDS 35.0%
TTCCAAGCAATTTCCAATGT+CGG - chr7.1:68456633-68456652 MS.gene071279:CDS 35.0%
TTGCTATACTTCATCTTCAG+AGG + chr7.1:68458471-68458490 None:intergenic 35.0%
TTGGCTAAGAGAATAGTTAG+AGG - chr7.1:68457152-68457171 MS.gene071279:CDS 35.0%
TTTATTGCTGTGTAGGTGTA+TGG - chr7.1:68459957-68459976 MS.gene071279:CDS 35.0%
! AAGGAAGAACTGTGGATTTT+AGG - chr7.1:68459526-68459545 MS.gene071279:CDS 35.0%
! AGCAATTGATCGGTTGATAT+TGG - chr7.1:68456818-68456837 MS.gene071279:intron 35.0%
! CCATTTTCACTGACAGTTTT+GGG + chr7.1:68460194-68460213 None:intergenic 35.0%
! GCAATTGATCGGTTGATATT+GGG - chr7.1:68456819-68456838 MS.gene071279:intron 35.0%
! TCCATTTTCACTGACAGTTT+TGG + chr7.1:68460195-68460214 None:intergenic 35.0%
! TTGTGAGGATTTTGTCAAGA+AGG - chr7.1:68457066-68457085 MS.gene071279:CDS 35.0%
!! TGCTTCTAGGGTTAAATTAG+AGG - chr7.1:68456893-68456912 MS.gene071279:intron 35.0%
!! TTGATAATGGAAGAGCTTTC+TGG + chr7.1:68456747-68456766 None:intergenic 35.0%
AAAGAAGTGGAAGATGCTGA+AGG - chr7.1:68457287-68457306 MS.gene071279:CDS 40.0%
AAGAAGTGGAAGATGCTGAA+GGG - chr7.1:68457288-68457307 MS.gene071279:CDS 40.0%
AAGAGATAAGAAGGGTTGTG+AGG - chr7.1:68457051-68457070 MS.gene071279:CDS 40.0%
AAGTCCACTTATGAGATGCT+CGG + chr7.1:68459586-68459605 None:intergenic 40.0%
ACAACCTCAGCTATTTGATC+TGG + chr7.1:68458708-68458727 None:intergenic 40.0%
ACGATATGGTGCAATTGAAG+AGG - chr7.1:68458602-68458621 MS.gene071279:CDS 40.0%
ACGCGATGAAGAGATAAGAA+GGG - chr7.1:68457043-68457062 MS.gene071279:CDS 40.0%
AGATGAGAACTTGATGCTGA+CGG - chr7.1:68458671-68458690 MS.gene071279:CDS 40.0%
AGATTGCACAGTAGAGTTGT+GGG - chr7.1:68458801-68458820 MS.gene071279:intron 40.0%
AGGTATATTGGACATGACGA+AGG - chr7.1:68459372-68459391 MS.gene071279:CDS 40.0%
ATATGGTGCAATTGAAGAGG+TGG - chr7.1:68458605-68458624 MS.gene071279:CDS 40.0%
ATGTCTAGTCGGTACATAAC+TGG - chr7.1:68457623-68457642 MS.gene071279:intron 40.0%
CCCAAAACTGTCAGTGAAAA+TGG - chr7.1:68460191-68460210 MS.gene071279:CDS 40.0%
CTGCTTCAAGTCTTAGATGA+CGG - chr7.1:68459486-68459505 MS.gene071279:CDS 40.0%
CTTCAATTGCACCATATCGT+AGG + chr7.1:68458602-68458621 None:intergenic 40.0%
GGGAAACTTGATCCTGTTAT+TGG - chr7.1:68457020-68457039 MS.gene071279:CDS 40.0%
GGTAAAACAGCTGTTGTTGA+AGG - chr7.1:68457128-68457147 MS.gene071279:CDS 40.0%
GTATACCGTGTGGAAAAGAA+TGG - chr7.1:68460107-68460126 MS.gene071279:CDS 40.0%
GTTGCATTCTCTTCCTTTCA+AGG + chr7.1:68458108-68458127 None:intergenic 40.0%
TAAACGAGTCACTGGTATAC+CGG + chr7.1:68458742-68458761 None:intergenic 40.0%
TAAAGTGGATGCAAGGTGTA+CGG + chr7.1:68456589-68456608 None:intergenic 40.0%
TATATTGGACATGACGAAGG+TGG - chr7.1:68459375-68459394 MS.gene071279:CDS 40.0%
TATTGATGTCATTGCAGGTG+CGG - chr7.1:68458412-68458431 MS.gene071279:intron 40.0%
TCAAGGTTGTCAATTTCCTC+AGG + chr7.1:68458091-68458110 None:intergenic 40.0%
TCAGGCCAGAATTGTTGAAT+AGG - chr7.1:68459667-68459686 MS.gene071279:CDS 40.0%
TCCAGCCTATTCAACAATTC+TGG + chr7.1:68459675-68459694 None:intergenic 40.0%
TGAAAGGAAGAGAATGCAAC+TGG - chr7.1:68458108-68458127 MS.gene071279:CDS 40.0%
TGACGAAGGTGGACAATTAA+CGG - chr7.1:68459386-68459405 MS.gene071279:CDS 40.0%
TGCTTCAAGTCTTAGATGAC+GGG - chr7.1:68459487-68459506 MS.gene071279:CDS 40.0%
TTCTCAAGCCACCTTCTAAT+TGG + chr7.1:68459990-68460009 None:intergenic 40.0%
! AAAGAAAGGTTGGTTGGACT+GGG - chr7.1:68458774-68458793 MS.gene071279:intron 40.0%
! AATCTTGAAGGTAGCACTGA+TGG - chr7.1:68458642-68458661 MS.gene071279:CDS 40.0%
! ATGGTGCTAGACCAATTAGA+AGG - chr7.1:68459976-68459995 MS.gene071279:CDS 40.0%
! CAAAGTCATTGAAAGAGCAC+AGG - chr7.1:68456764-68456783 MS.gene071279:intron 40.0%
! CATCTCATAAGTGGACTTTC+AGG - chr7.1:68459588-68459607 MS.gene071279:CDS 40.0%
! GGCAATTGATTTAGTTGACG+AGG - chr7.1:68458030-68458049 MS.gene071279:CDS 40.0%
! TAAAGAAAGGTTGGTTGGAC+TGG - chr7.1:68458773-68458792 MS.gene071279:intron 40.0%
! TGCACCGATCAATCTTGAAA+CGG + chr7.1:68459036-68459055 None:intergenic 40.0%
!! AAGTGATTTGGTATACCGTG+TGG - chr7.1:68460097-68460116 MS.gene071279:CDS 40.0%
!! ACTTCATGCTTTGGAGAAAG+AGG - chr7.1:68458138-68458157 MS.gene071279:CDS 40.0%
!! ATCTTGAAGGTAGCACTGAT+GGG - chr7.1:68458643-68458662 MS.gene071279:CDS 40.0%
!! CGGTAAAACAGAACTTGCTA+AGG - chr7.1:68458935-68458954 MS.gene071279:intron 40.0%
!!! GAAGGCTGTTTTGAAAGAAG+TGG - chr7.1:68457274-68457293 MS.gene071279:CDS 40.0%
AAAGTGGATGCAAGGTGTAC+GGG + chr7.1:68456588-68456607 None:intergenic 45.0%
AACAGCTGTTGTTGAAGGGT+TGG - chr7.1:68457133-68457152 MS.gene071279:CDS 45.0%
AAGCAGTTAAAGCTGTCGCT+GGG - chr7.1:68458832-68458851 MS.gene071279:intron 45.0%
AAGGAACCAGTTGGTTGTTG+TGG + chr7.1:68458891-68458910 None:intergenic 45.0%
AAGGTGGCTTGAGAAGAATG+TGG - chr7.1:68459995-68460014 MS.gene071279:CDS 45.0%
ACCGTGTGGAAAAGAATGGA+GGG - chr7.1:68460111-68460130 MS.gene071279:CDS 45.0%
ACTGTAAGGCCTTCTCCTTA+CGG + chr7.1:68459415-68459434 None:intergenic 45.0%
AGCAATTGAGGAAGGTTGCA+AGG - chr7.1:68459727-68459746 MS.gene071279:CDS 45.0%
AGGAATAGGAAGGAACCAGT+TGG + chr7.1:68458900-68458919 None:intergenic 45.0%
AGGATGCTGCATTTGAAAGG+AGG - chr7.1:68457471-68457490 MS.gene071279:intron 45.0%
AGTTGGACCAAGGAATAGGA+AGG + chr7.1:68458910-68458929 None:intergenic 45.0%
ATCTCACGAGCAATTGAGGA+AGG - chr7.1:68459719-68459738 MS.gene071279:CDS 45.0%
ATTATAGGTGAGCCAGGTGT+TGG - chr7.1:68457107-68457126 MS.gene071279:CDS 45.0%
CAAGCAATTTCCAATGTCGG+TGG - chr7.1:68456636-68456655 MS.gene071279:CDS 45.0%
CACCGACATTGGAAATTGCT+TGG + chr7.1:68456638-68456657 None:intergenic 45.0%
CAGATTGCACAGTAGAGTTG+TGG - chr7.1:68458800-68458819 MS.gene071279:intron 45.0%
CATTGATCCTTGACATCGAC+CGG + chr7.1:68457357-68457376 None:intergenic 45.0%
CCTGGCTCACCTATAATAAC+AGG + chr7.1:68457104-68457123 None:intergenic 45.0%
CCTGTTATTATAGGTGAGCC+AGG - chr7.1:68457101-68457120 MS.gene071279:CDS 45.0%
CGTGGACAACTTAGATGCAT+CGG - chr7.1:68457410-68457429 MS.gene071279:intron 45.0%
CTAATGGTATCAGGCACACT+AGG + chr7.1:68457521-68457540 None:intergenic 45.0%
CTCAATTGCTCGTGAGATAG+AGG + chr7.1:68459717-68459736 None:intergenic 45.0%
CTCTATCTCACGAGCAATTG+AGG - chr7.1:68459715-68459734 MS.gene071279:CDS 45.0%
CTTGTTGACAGAATCTGGTG+TGG - chr7.1:68456869-68456888 MS.gene071279:intron 45.0%
GAAGAGAATGCAACTGGAAG+TGG - chr7.1:68458114-68458133 MS.gene071279:CDS 45.0%
GACAATTAACGGAAGCCGTA+AGG - chr7.1:68459397-68459416 MS.gene071279:CDS 45.0%
GACGCGATGAAGAGATAAGA+AGG - chr7.1:68457042-68457061 MS.gene071279:CDS 45.0%
GAGCTGCAACAACAATTGCA+CGG + chr7.1:68457601-68457620 None:intergenic 45.0%
GCCAGAATTGTTGAATAGGC+TGG - chr7.1:68459671-68459690 MS.gene071279:CDS 45.0%
GGAAGTGGAACTTCATGCTT+TGG - chr7.1:68458129-68458148 MS.gene071279:CDS 45.0%
GGGATTGTTGATGCTGAAAC+TGG - chr7.1:68460131-68460150 MS.gene071279:CDS 45.0%
GGTATACCAGTGACTCGTTT+AGG - chr7.1:68458741-68458760 MS.gene071279:intron 45.0%
GGTTGCAAGGTTGCAAATGA+AGG - chr7.1:68459740-68459759 MS.gene071279:CDS 45.0%
GTGCTAGACCAATTAGAAGG+TGG - chr7.1:68459979-68459998 MS.gene071279:CDS 45.0%
TACCGTGTGGAAAAGAATGG+AGG - chr7.1:68460110-68460129 MS.gene071279:CDS 45.0%
TCTTCATCGCGTCCAATAAC+AGG + chr7.1:68457035-68457054 None:intergenic 45.0%
TGCTGAGAGAGGAATTGCAT+TGG - chr7.1:68459779-68459798 MS.gene071279:CDS 45.0%
TGGACCAGATCAAATAGCTG+AGG - chr7.1:68458701-68458720 MS.gene071279:CDS 45.0%
TGGTCCAAAGGGAAGTGATT+TGG - chr7.1:68460085-68460104 MS.gene071279:CDS 45.0%
TTCAAACCTATGCTTGCTCG+TGG - chr7.1:68457392-68457411 MS.gene071279:intron 45.0%
TTCCTATTCCTTGGTCCAAC+TGG - chr7.1:68458909-68458928 MS.gene071279:intron 45.0%
TTGATGCTGACGGAAACTGT+TGG - chr7.1:68458681-68458700 MS.gene071279:CDS 45.0%
TTGCAGCTCAGATGTCTAGT+CGG - chr7.1:68457612-68457631 MS.gene071279:intron 45.0%
! ACAACTGTGTGCATTGATGC+TGG - chr7.1:68460065-68460084 MS.gene071279:CDS 45.0%
! ACTGGTTCCTTCCTATTCCT+TGG - chr7.1:68458900-68458919 MS.gene071279:intron 45.0%
! AGAGACTTGGTTGAACAAGC+AGG - chr7.1:68456999-68457018 MS.gene071279:CDS 45.0%
! AGTCGCTGGTACTGAGTATA+GGG - chr7.1:68457232-68457251 MS.gene071279:CDS 45.0%
! ATTCATCTTGTTCTCGGTGC+CGG - chr7.1:68457335-68457354 MS.gene071279:CDS 45.0%
! GAGACTTGGTTGAACAAGCA+GGG - chr7.1:68457000-68457019 MS.gene071279:CDS 45.0%
! TAGTCGCTGGTACTGAGTAT+AGG - chr7.1:68457231-68457250 MS.gene071279:CDS 45.0%
! TCCCTCCATTCTTTTCCACA+CGG + chr7.1:68460115-68460134 None:intergenic 45.0%
! TCTGTTTTACCGACACCAGT+TGG + chr7.1:68458927-68458946 None:intergenic 45.0%
! TGCATTGATGCTGGTCCAAA+GGG - chr7.1:68460074-68460093 MS.gene071279:CDS 45.0%
! TTTTGGCCTAAACGAGTCAC+TGG + chr7.1:68458750-68458769 None:intergenic 45.0%
!! ACAGCTGTTTTACCAACACC+TGG + chr7.1:68457122-68457141 None:intergenic 45.0%
!! GCAGACTTGTTGACAGAATC+TGG - chr7.1:68456864-68456883 MS.gene071279:intron 45.0%
!! TCATGCTTTGGAGAAAGAGG+AGG - chr7.1:68458141-68458160 MS.gene071279:CDS 45.0%
!! TGGTGGACAATGCTTTTCGT+CGG - chr7.1:68458339-68458358 MS.gene071279:intron 45.0%
!!! CTGACAGTTTTGGGTCCATT+TGG + chr7.1:68460185-68460204 None:intergenic 45.0%
AATCTGGTGTGGCTGCTTCT+AGG - chr7.1:68456880-68456899 MS.gene071279:intron 50.0%
AGAGCTCCTCTTTGCACTAC+AGG - chr7.1:68458539-68458558 MS.gene071279:intron 50.0%
AGAGCTGCAGACCTACGATA+TGG - chr7.1:68458588-68458607 MS.gene071279:CDS 50.0%
AGATTCGTCACCACCGACAT+TGG + chr7.1:68456649-68456668 None:intergenic 50.0%
AGCAGTTAAAGCTGTCGCTG+GGG - chr7.1:68458833-68458852 MS.gene071279:intron 50.0%
AGTGGAAGATGCTGAAGGGA+AGG - chr7.1:68457292-68457311 MS.gene071279:CDS 50.0%
AGTTGTCCACGAGCAAGCAT+AGG + chr7.1:68457401-68457420 None:intergenic 50.0%
ATATCGTAGGTCTGCAGCTC+TGG + chr7.1:68458589-68458608 None:intergenic 50.0%
ATCTGGTGTGGCTGCTTCTA+GGG - chr7.1:68456881-68456900 MS.gene071279:intron 50.0%
CAAGCAGTTAAAGCTGTCGC+TGG - chr7.1:68458831-68458850 MS.gene071279:intron 50.0%
CACAGTTCTTCCTTGGCCAT+CGG + chr7.1:68459520-68459539 None:intergenic 50.0%
CACCAGTTGGACCAAGGAAT+AGG + chr7.1:68458914-68458933 None:intergenic 50.0%
CGGTCGATGTCAAGGATCAA+TGG - chr7.1:68457355-68457374 MS.gene071279:intron 50.0%
GGAAGACCACAACAACCAAC+TGG - chr7.1:68458882-68458901 MS.gene071279:intron 50.0%
GGTCATTGGCGACGATGAAA+TGG - chr7.1:68460220-68460239 MS.gene071279:CDS 50.0%
TAACGGAAGCCGTAAGGAGA+AGG - chr7.1:68459403-68459422 MS.gene071279:CDS 50.0%
TAGCTGAGGTTGTAAGCCGA+TGG - chr7.1:68458715-68458734 MS.gene071279:CDS 50.0%
TCAACTTGACAGTCAGCCTG+AGG - chr7.1:68458072-68458091 MS.gene071279:CDS 50.0%
TCACTGGTATACCGGTCCAT+CGG + chr7.1:68458734-68458753 None:intergenic 50.0%
TTCCTTGGTCCAACTGGTGT+CGG - chr7.1:68458915-68458934 MS.gene071279:intron 50.0%
! CAGCGACAGCTTTAACTGCT+TGG + chr7.1:68458833-68458852 None:intergenic 50.0%
! CTTTCTGGTACATGCTGTGG+TGG + chr7.1:68456732-68456751 None:intergenic 50.0%
! GAGCTTTCTGGTACATGCTG+TGG + chr7.1:68456735-68456754 None:intergenic 50.0%
! GTCGCTGGTACTGAGTATAG+GGG - chr7.1:68457233-68457252 MS.gene071279:CDS 50.0%
! GTGAGATCGAGAGCTGGTTT+AGG - chr7.1:68458861-68458880 MS.gene071279:intron 50.0%
! GTGCATTGATGCTGGTCCAA+AGG - chr7.1:68460073-68460092 MS.gene071279:CDS 50.0%
!! GATGACGGGAGATTAACCGA+TGG - chr7.1:68459501-68459520 MS.gene071279:CDS 50.0%
AGATTGATCGGTGCACCACC+AGG - chr7.1:68459041-68459060 MS.gene071279:intron 55.0%
CAGCCTCCTGTAGTGCAAAG+AGG + chr7.1:68458548-68458567 None:intergenic 55.0%
CGATGGCCAAGGAAGAACTG+TGG - chr7.1:68459518-68459537 MS.gene071279:CDS 55.0%
GAGGTTGTAAGCCGATGGAC+CGG - chr7.1:68458720-68458739 MS.gene071279:intron 55.0%
GATTGATCGGTGCACCACCA+GGG - chr7.1:68459042-68459061 MS.gene071279:intron 55.0%
GCTAGTCGTCTTGCTGAGAG+AGG - chr7.1:68459768-68459787 MS.gene071279:CDS 55.0%
GCTCCTCTTTGCACTACAGG+AGG - chr7.1:68458542-68458561 MS.gene071279:intron 55.0%
GCTGTAGTGAGATCGAGAGC+TGG - chr7.1:68458855-68458874 MS.gene071279:intron 55.0%
GGGAGATTAACCGATGGCCA+AGG - chr7.1:68459507-68459526 MS.gene071279:CDS 55.0%
TACCGACACCAGTTGGACCA+AGG + chr7.1:68458920-68458939 None:intergenic 55.0%
TCGATCGCGAGCAACTTGCA+TGG + chr7.1:68459622-68459641 None:intergenic 55.0%
TCTGGTACATGCTGTGGTGG+AGG + chr7.1:68456729-68456748 None:intergenic 55.0%
TGACGAATCTGCACGTTCCG+TGG - chr7.1:68456659-68456678 MS.gene071279:CDS 55.0%
TTGCACTACAGGAGGCTGAG+AGG - chr7.1:68458550-68458569 MS.gene071279:intron 55.0%
! CAGGAAGCACAGAAGTCACG+CGG - chr7.1:68456783-68456802 MS.gene071279:intron 55.0%
! TGTGGTGGAGGCTGTTGAGT+AGG + chr7.1:68456717-68456736 None:intergenic 55.0%
!! AGGGCGTCGTCTTCCTGATA+AGG - chr7.1:68458009-68458028 MS.gene071279:CDS 55.0%
!! GATATGGGAGCGTTAGTCGC+TGG - chr7.1:68457218-68457237 MS.gene071279:CDS 55.0%
CACTACAGGAGGCTGAGAGG+CGG - chr7.1:68458553-68458572 MS.gene071279:CDS 60.0%
TTATGAGATGCTCGGCGCCG+AGG + chr7.1:68459578-68459597 None:intergenic 60.0%
! GGCGCCGAGCATCTCATAAG+TGG - chr7.1:68459579-68459598 MS.gene071279:CDS 60.0%
! ATGCTCGGCGCCGAGGTTTG+AGG + chr7.1:68459571-68459590 None:intergenic 65.0%
!! CTCGGTGCCGGTCGATGTCA+AGG - chr7.1:68457347-68457366 MS.gene071279:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 68456495 68460250 68456495 ID=MS.gene071279
chr7.1 mRNA 68456495 68460250 68456495 ID=MS.gene071279.t1;Parent=MS.gene071279
chr7.1 exon 68459101 68460250 68459101 ID=MS.gene071279.t1.exon1;Parent=MS.gene071279.t1
chr7.1 CDS 68459101 68460250 68459101 ID=cds.MS.gene071279.t1;Parent=MS.gene071279.t1
chr7.1 exon 68458553 68458734 68458553 ID=MS.gene071279.t1.exon2;Parent=MS.gene071279.t1
chr7.1 CDS 68458553 68458734 68458553 ID=cds.MS.gene071279.t1;Parent=MS.gene071279.t1
chr7.1 exon 68457682 68458316 68457682 ID=MS.gene071279.t1.exon3;Parent=MS.gene071279.t1
chr7.1 CDS 68457682 68458316 68457682 ID=cds.MS.gene071279.t1;Parent=MS.gene071279.t1
chr7.1 exon 68456894 68457371 68456894 ID=MS.gene071279.t1.exon4;Parent=MS.gene071279.t1
chr7.1 CDS 68456894 68457371 68456894 ID=cds.MS.gene071279.t1;Parent=MS.gene071279.t1
chr7.1 exon 68456495 68456773 68456495 ID=MS.gene071279.t1.exon5;Parent=MS.gene071279.t1
chr7.1 CDS 68456495 68456773 68456495 ID=cds.MS.gene071279.t1;Parent=MS.gene071279.t1
Gene Sequence

>MS.gene071279

ATGGATCCACGAAAGTTTACAAACAAAACAAACGAATCATTTGCTGTTGCTAGAAAACTAGCAATAAGTTCAGGACATGCTCAGCTCACTCCCGTACACCTTGCATCCACTTTAATTTCTGATCTCAATGGTATATTTTTCCAAGCAATTTCCAATGTCGGTGGTGACGAATCTGCACGTTCCGTGGAAAGAGTTTTAAAACAAGCACTGAAAAAATATCCTACTCAACAGCCTCCACCACAGCATGTACCAGAAAGCTCTTCCATTATCAAAGTCATTGAAAGAGCACAGGAAGCACAGAAGTCACGCGGTGACACTCATTTAGCAATTGATCGGTTGATATTGGGAATTCTTGAGGATTCTCAAATTGCAGACTTGTTGACAGAATCTGGTGTGGCTGCTTCTAGGGTTAAATTAGAGGTTGAAAATCTTCGCAGTAAAGAAGGGACGAAAGTTGAGAGTGCTTGTAGTGACAATACATTTGAAGCATTGAAAACTTATGGTAGAGACTTGGTTGAACAAGCAGGGAAACTTGATCCTGTTATTGGACGCGATGAAGAGATAAGAAGGGTTGTGAGGATTTTGTCAAGAAGGACAAAGAACAATCCTGTTATTATAGGTGAGCCAGGTGTTGGTAAAACAGCTGTTGTTGAAGGGTTGGCTAAGAGAATAGTTAGAGGAGATGTTCCTAGTAATCTTGCTGATGTTAGGTTATTTGCTTTGGATATGGGAGCGTTAGTCGCTGGTACTGAGTATAGGGGACAATTTGAAGAAAGGTTGAAGGCTGTTTTGAAAGAAGTGGAAGATGCTGAAGGGAAGGTTATTGTTTTCATTGATGAAATTCATCTTGTTCTCGGTGCCGGTCGATGTCAAGGATCAATGGATGCTGCTAATCTTTTCAAACCTATGCTTGCTCGTGGACAACTTAGATGCATCGGTGCAACAACACTTGATGAATATAGGCAATATGTTGAAAAGGATGCTGCATTTGAAAGGAGGTTTCAACAGGTTCATGTTTCTGAACCTAGTGTGCCTGATACCATTAGTATTCTTCGTGGACTAAAAGAAAAATATGAGGGTCATCATGGTGTTCGAATTCAAGACCGTGCAATTGTTGTTGCAGCTCAGATGTCTAGTCGGTACATAACTGGTATAGATAAGTTTTCTCAATGTTAATTACTCCATCAGTTTTCTTTTAATTTTTGCTTTTCTAGATTTTTTTTTTTCTTCTGTTTACTTGTCACCTTTAAAGTGTAATGCAATATTAGCTACTGTTTTATCAATATTACACACAAGTATTTATTGCAAACAGTAATGAGATAATAAATAGTTACGGCTGTTATAAGTAAAAGAGAAATAATTATATCAAACGTAACAAGATTTATTGATTTTATTGGTATGTGCACATCTTAAAACAGAAGTTAAAAGGAATGGAGGGAGTATTTATGTATTGAATGTGGATGGTTTTTATTGTGGTTTTACTAACATGGTATGTTTCTGTTTTGTGTTTGTTAAGGGCGTCGTCTTCCTGATAAGGCAATTGATTTAGTTGACGAGGCTTGTGCAAATGTTAGAGTTCAACTTGACAGTCAGCCTGAGGAAATTGACAACCTTGAAAGGAAGAGAATGCAACTGGAAGTGGAACTTCATGCTTTGGAGAAAGAGGAGGACAAAGCTAGCAAAGCTCGTCTTGTAGATGTAAGTCTCGATGTTGAGTTTTTCTTTTAACTAAGGGTTGGTGATATATTTGACAATGAACACATATCTATTCTAAGAGCTATGTTAAATGTACGAGTATGAAAGAGACAGAATTCTACGACAATTGAATAAAACTAAAAAATGAGTGGTGGACAATGCTTTTCGTCGGTTTTCGTATGCACTGCCTTTGTAACATCCATTATTCTCCTTTATTCTAATTATTGATGTCATTGCAGGTGCGGAAAGAACTTGACAATTTAAGAGACAAGCTTCAACCTCTGAAGATGAAGTATAGCAAAGAGAAAGAGAGGATTGATGAGATTCGAAGTCTGAAACAGAAACGTGAAGAGCTCCTCTTTGCACTACAGGAGGCTGAGAGGCGGTATGATCTAGCCAGAGCTGCAGACCTACGATATGGTGCAATTGAAGAGGTGGAAAATGCAATAAAAAATCTTGAAGGTAGCACTGATGGGAACAAAGATGAGAACTTGATGCTGACGGAAACTGTTGGACCAGATCAAATAGCTGAGGTTGTAAGCCGATGGACCGGTATACCAGTGACTCGTTTAGGCCAAAATGATAAAGAAAGGTTGGTTGGACTGGGTGACAGATTGCACAGTAGAGTTGTGGGACAAGACCAAGCAGTTAAAGCTGTCGCTGGGGCTGTAGTGAGATCGAGAGCTGGTTTAGGAAGACCACAACAACCAACTGGTTCCTTCCTATTCCTTGGTCCAACTGGTGTCGGTAAAACAGAACTTGCTAAGGCTCTTGCTCAACAACTCTTCGATAATGAAAATCAGATGGTTAGACTTGATATGTCCGAATACATGGAAAAATACTCCGTTTCAAGATTGATCGGTGCACCACCAGGGTAAGATATTGTATTTTTAGCTGCATTTGATTATAGTAAAAGCCTAAATTATACTTGGAGATAAAAAAAAAATTAATACGTTTGGTCCATGGAAAAGAGCTACAAATTTGGTCTTTAAATATTTCAAATGTCGGTCAAATTAGTCTTTGTTGAGATTTATTTAACCGGCATTTGAAATTTGGTTTATTTGACTTCATTGAATGCGAGTTTTTATTTTCCTATTAATACTTGTTTAGACTTATAGTCTTTCACATATCATGAATTAAAGATATGCATTTCATGTGTCACTGATTGTGAAATGAGTTTTCAGGTATATTGGACATGACGAAGGTGGACAATTAACGGAAGCCGTAAGGAGAAGGCCTTACAGTCTAGTACTTTTTGATGAAGTTGAGAAGGCACACACATCTGTATTCAACACTCTGCTTCAAGTCTTAGATGACGGGAGATTAACCGATGGCCAAGGAAGAACTGTGGATTTTAGGAACACAGTCATTATCATGACCTCAAACCTCGGCGCCGAGCATCTCATAAGTGGACTTTCAGGAAATTGTACCATGCAAGTTGCTCGCGATCGAGTAATGCTTGAAGTAAAAAAGCATTTCAGGCCAGAATTGTTGAATAGGCTGGACGAAGTTGTTGTATTCGATCCTCTATCTCACGAGCAATTGAGGAAGGTTGCAAGGTTGCAAATGAAGGATGTAGCTAGTCGTCTTGCTGAGAGAGGAATTGCATTGGCAGTTACCGATCCAGCACTAGATTATATACTTGCTGAAAGCTATGATCCCGTAAGTGCTCTTATATAATCATCATCTTAATCATTTTCTTAAATAAAAAAAAATGTTATATTTGAGGGGACTAAAACCATATTTAAACGAAAAATGCGACTATGTTTTATTGCTGTGTAGGTGTATGGTGCTAGACCAATTAGAAGGTGGCTTGAGAAGAATGTGGTGACAGAGCTGTCTATGATGCTTATAAAGGAAGAAATTGATGAGAATACAACTGTGTGCATTGATGCTGGTCCAAAGGGAAGTGATTTGGTATACCGTGTGGAAAAGAATGGAGGGATTGTTGATGCTGAAACTGGTGTGAAGTCAGATATTTTGATTCAAATACCAAATGGACCCAAAACTGTCAGTGAAAATGGATATGAGGTCATTGGCGACGATGAAATGGAAGAGTGA
Protein sequence

>MS.gene071279.t1

MDPRKFTNKTNESFAVARKLAISSGHAQLTPVHLASTLISDLNGIFFQAISNVGGDESARSVERVLKQALKKYPTQQPPPQHVPESSSIIKVIERAQEAQKSRGDTHLAIDRLILGILEDSQIADLLTESGVAASRVKLEVENLRSKEGTKVESACSDNTFEALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVIIGEPGVGKTAVVEGLAKRIVRGDVPSNLADVRLFALDMGALVAGTEYRGQFEERLKAVLKEVEDAEGKVIVFIDEIHLVLGAGRCQGSMDAANLFKPMLARGQLRCIGATTLDEYRQYVEKDAAFERRFQQVHVSEPSVPDTISILRGLKEKYEGHHGVRIQDRAIVVAAQMSSRYITGRRLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEEDKASKARLVDVRKELDNLRDKLQPLKMKYSKEKERIDEIRSLKQKREELLFALQEAERRYDLARAADLRYGAIEEVENAIKNLEGSTDGNKDENLMLTETVGPDQIAEVVSRWTGIPVTRLGQNDKERLVGLGDRLHSRVVGQDQAVKAVAGAVVRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAQQLFDNENQMVRLDMSEYMEKYSVSRLIGAPPGYIGHDEGGQLTEAVRRRPYSLVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLISGLSGNCTMQVARDRVMLEVKKHFRPELLNRLDEVVVFDPLSHEQLRKVARLQMKDVASRLAERGIALAVTDPALDYILAESYDPVYGARPIRRWLEKNVVTELSMMLIKEEIDENTTVCIDAGPKGSDLVYRVEKNGGIVDAETGVKSDILIQIPNGPKTVSENGYEVIGDDEMEE