Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071675.t1 | XP_003590938.1 | 95 | 322 | 15 | 1 | 6 | 326 | 128 | 449 | 6.00E-168 | 600.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071675.t1 | Q9SR19 | 56.8 | 331 | 125 | 7 | 6 | 326 | 127 | 449 | 5.6e-90 | 332.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071675.t1 | G7I682 | 95.0 | 322 | 15 | 1 | 6 | 326 | 128 | 449 | 4.3e-168 | 600.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050099 | MS.gene071675 | 0.804481 | 2.12E-49 | -1.69E-46 |
| MS.gene050404 | MS.gene071675 | 0.849491 | 3.12E-60 | -1.69E-46 |
| MS.gene050406 | MS.gene071675 | 0.848362 | 6.43E-60 | -1.69E-46 |
| MS.gene050812 | MS.gene071675 | 0.835831 | 1.33E-56 | -1.69E-46 |
| MS.gene051171 | MS.gene071675 | 0.901806 | 1.85E-78 | -1.69E-46 |
| MS.gene051240 | MS.gene071675 | 0.80318 | 3.94E-49 | -1.69E-46 |
| MS.gene051242 | MS.gene071675 | 0.864335 | 1.31E-64 | -1.69E-46 |
| MS.gene051244 | MS.gene071675 | 0.873682 | 1.22E-67 | -1.69E-46 |
| MS.gene051471 | MS.gene071675 | 0.809052 | 2.29E-50 | -1.69E-46 |
| MS.gene052078 | MS.gene071675 | 0.841216 | 5.43E-58 | -1.69E-46 |
| MS.gene052310 | MS.gene071675 | 0.817549 | 3.11E-52 | -1.69E-46 |
| MS.gene052340 | MS.gene071675 | 0.806642 | 7.45E-50 | -1.69E-46 |
| MS.gene053330 | MS.gene071675 | 0.820622 | 6.22E-53 | -1.69E-46 |
| MS.gene053971 | MS.gene071675 | 0.820091 | 8.24E-53 | -1.69E-46 |
| MS.gene055370 | MS.gene071675 | 0.840395 | 8.92E-58 | -1.69E-46 |
| MS.gene055428 | MS.gene071675 | 0.804948 | 1.69E-49 | -1.69E-46 |
| MS.gene056633 | MS.gene071675 | 0.840766 | 7.13E-58 | -1.69E-46 |
| MS.gene056664 | MS.gene071675 | 0.8829 | 7.07E-71 | -1.69E-46 |
| MS.gene056796 | MS.gene071675 | 0.819149 | 1.35E-52 | -1.69E-46 |
| MS.gene057032 | MS.gene071675 | 0.820801 | 5.66E-53 | -1.69E-46 |
| MS.gene057196 | MS.gene071675 | 0.824449 | 8.02E-54 | -1.69E-46 |
| MS.gene057295 | MS.gene071675 | 0.809255 | 2.07E-50 | -1.69E-46 |
| MS.gene058233 | MS.gene071675 | 0.814734 | 1.33E-51 | -1.69E-46 |
| MS.gene058276 | MS.gene071675 | 0.891837 | 2.76E-74 | -1.69E-46 |
| MS.gene058743 | MS.gene071675 | 0.806183 | 9.31E-50 | -1.69E-46 |
| MS.gene058746 | MS.gene071675 | 0.873364 | 1.56E-67 | -1.69E-46 |
| MS.gene059894 | MS.gene071675 | 0.829989 | 3.78E-55 | -1.69E-46 |
| MS.gene060407 | MS.gene071675 | 0.871897 | 4.81E-67 | -1.69E-46 |
| MS.gene061231 | MS.gene071675 | 0.803807 | 2.92E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071675.t1 | MTR_1g079870 | 95.031 | 322 | 15 | 1 | 6 | 326 | 128 | 449 | 0.0 | 592 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071675.t1 | AT3G04550 | 57.530 | 332 | 123 | 7 | 5 | 326 | 126 | 449 | 1.05e-116 | 344 |
| MS.gene071675.t1 | AT5G28500 | 55.828 | 326 | 131 | 7 | 6 | 326 | 117 | 434 | 3.94e-110 | 327 |
| MS.gene071675.t1 | AT5G28500 | 55.172 | 145 | 64 | 1 | 6 | 149 | 117 | 261 | 8.96e-51 | 169 |
Find 84 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGGGACCGGTGGTTAATTT+AGG | 0.114204 | 1.4:-65497129 | MS.gene071675:CDS |
| TGGTAATGATGTTGGTTTAA+AGG | 0.259795 | 1.4:-65496956 | MS.gene071675:CDS |
| GGAAGGAGAAAGGGTGATTA+TGG | 0.275153 | 1.4:-65497238 | MS.gene071675:CDS |
| TGTTCAAGAAAAGCAGTTCT+TGG | 0.278998 | 1.4:+65497444 | None:intergenic |
| CGGAGAAAGGGTGGGAGAAA+TGG | 0.285910 | 1.4:-65497167 | MS.gene071675:CDS |
| ATGGGTGGTGTTACCGGCTT+GGG | 0.286269 | 1.4:-65497148 | MS.gene071675:CDS |
| ATGGGTGTTAATGAGTGTTT+AGG | 0.291608 | 1.4:-65496907 | MS.gene071675:CDS |
| CTATCAGCAACCACTAAAAT+AGG | 0.314068 | 1.4:+65497030 | None:intergenic |
| TAAAGCTAGAAAAGTGGTTT+TGG | 0.317665 | 1.4:-65497397 | MS.gene071675:CDS |
| GGAGAAATGGGTGGTGTTAC+CGG | 0.322308 | 1.4:-65497154 | MS.gene071675:CDS |
| GGGGACCGGTGGTTAATTTA+GGG | 0.336098 | 1.4:-65497128 | MS.gene071675:CDS |
| GGTATTGTGGTGGCGGAGAA+AGG | 0.343947 | 1.4:-65497180 | MS.gene071675:CDS |
| ATATGTTGAGTGAAGAAGTT+TGG | 0.346774 | 1.4:-65496840 | MS.gene071675:CDS |
| TTCAATCTCACCACATTAAC+AGG | 0.351102 | 1.4:+65497318 | None:intergenic |
| GGAGAAAGGGTGGGAGAAAT+GGG | 0.357471 | 1.4:-65497166 | MS.gene071675:CDS |
| TGCCATGGAAGGCTAATAAT+AGG | 0.364102 | 1.4:-65497068 | MS.gene071675:CDS |
| AGCACCTTCTGAGATTAAAA+AGG | 0.372534 | 1.4:-65497214 | MS.gene071675:CDS |
| AGATCTAGCCCGTTCGATAA+AGG | 0.374992 | 1.4:-65497583 | MS.gene071675:CDS |
| TTTGTATTACAGACAAAGTA+AGG | 0.394057 | 1.4:-65497487 | MS.gene071675:CDS |
| GGTGTTACCGGCTTGGGGAC+CGG | 0.395571 | 1.4:-65497142 | MS.gene071675:CDS |
| GGAATGTAGTTATTGTTGTT+AGG | 0.400847 | 1.4:-65496885 | MS.gene071675:CDS |
| TGGGTGTTAATGAGTGTTTA+GGG | 0.409763 | 1.4:-65496906 | MS.gene071675:CDS |
| TGGTTGCTGATAGGAGTAAG+AGG | 0.410027 | 1.4:-65497020 | MS.gene071675:CDS |
| TGTTGGTTTAAAGGTTCAAA+GGG | 0.456616 | 1.4:-65496947 | MS.gene071675:CDS |
| AGGGAGGTGGAGAATGATGA+TGG | 0.457400 | 1.4:-65497000 | MS.gene071675:CDS |
| GTATTGTGGTGGCGGAGAAA+GGG | 0.458441 | 1.4:-65497179 | MS.gene071675:CDS |
| TTGTGGTGGCGGAGAAAGGG+TGG | 0.459053 | 1.4:-65497176 | MS.gene071675:CDS |
| TGGGAAGGCTGAAGAGGAGG+AGG | 0.459630 | 1.4:-65497364 | MS.gene071675:CDS |
| AATGGGTGGTGTTACCGGCT+TGG | 0.460749 | 1.4:-65497149 | MS.gene071675:CDS |
| CGGGAAATCCTTTATCGAAC+GGG | 0.464450 | 1.4:+65497575 | None:intergenic |
| GTTGAGTGGGAAGGCTGAAG+AGG | 0.478627 | 1.4:-65497370 | MS.gene071675:CDS |
| TTTAAAGGTTCAAAGGGGTT+CGG | 0.488260 | 1.4:-65496941 | MS.gene071675:CDS |
| GAGTGGGAAGGCTGAAGAGG+AGG | 0.488401 | 1.4:-65497367 | MS.gene071675:CDS |
| TTTGGAGGAGTTGAGTGGGA+AGG | 0.491934 | 1.4:-65497379 | MS.gene071675:CDS |
| ATTGTGGAGAAGAGATATGA+TGG | 0.494977 | 1.4:-65497618 | MS.gene071675:CDS |
| TAAAGCTGAGGAAGGAGAAA+GGG | 0.501190 | 1.4:-65497247 | MS.gene071675:CDS |
| AAAGATGATGGTAATGATGT+TGG | 0.508132 | 1.4:-65496964 | MS.gene071675:CDS |
| CTCTCTTACTTTGATAGCGG+TGG | 0.514436 | 1.4:-65497705 | MS.gene071675:CDS |
| TATGTTGAGTGAAGAAGTTT+GGG | 0.515005 | 1.4:-65496839 | MS.gene071675:CDS |
| GTAAAGCTGAGGAAGGAGAA+AGG | 0.520531 | 1.4:-65497248 | MS.gene071675:CDS |
| ATGTTGGTTTAAAGGTTCAA+AGG | 0.522076 | 1.4:-65496948 | MS.gene071675:CDS |
| AAAGCAGTTCTTGGATCAGA+AGG | 0.525966 | 1.4:+65497453 | None:intergenic |
| GGAAGGTGAGTTTGGTATTG+TGG | 0.527760 | 1.4:-65497193 | MS.gene071675:CDS |
| TGCAGCAGCACGTTGCGAAG+TGG | 0.531493 | 1.4:+65497650 | None:intergenic |
| TTATATTTAGTAAAAGATGA+TGG | 0.535345 | 1.4:-65496976 | MS.gene071675:CDS |
| TGATAGGAGTAAGAGGGAGG+TGG | 0.538668 | 1.4:-65497013 | MS.gene071675:CDS |
| GGTTGCTGATAGGAGTAAGA+GGG | 0.547205 | 1.4:-65497019 | MS.gene071675:CDS |
| CACCTATTATTAGCCTTCCA+TGG | 0.547326 | 1.4:+65497066 | None:intergenic |
| TGAGTTTGGTATTGTGGTGG+CGG | 0.548046 | 1.4:-65497187 | MS.gene071675:CDS |
| GTCTGATAAAGCTAGAAAAG+TGG | 0.552366 | 1.4:-65497403 | MS.gene071675:CDS |
| GGCTAATAATAGGTGGCGTA+AGG | 0.557273 | 1.4:-65497058 | MS.gene071675:CDS |
| GAGAAGAGATATGATGGAAA+AGG | 0.557379 | 1.4:-65497612 | MS.gene071675:CDS |
| GTTACCGGCTTGGGGACCGG+TGG | 0.557447 | 1.4:-65497139 | MS.gene071675:CDS |
| CCGGTGGTTAATTTAGGGAA+AGG | 0.564815 | 1.4:-65497123 | MS.gene071675:CDS |
| TGCTGATAGGAGTAAGAGGG+AGG | 0.570809 | 1.4:-65497016 | MS.gene071675:CDS |
| AAATAAGCAAGACAATCTCC+CGG | 0.574397 | 1.4:+65497507 | None:intergenic |
| AGGTGAGTTTGGTATTGTGG+TGG | 0.575600 | 1.4:-65497190 | MS.gene071675:CDS |
| TGTGGTGGCGGAGAAAGGGT+GGG | 0.576608 | 1.4:-65497175 | MS.gene071675:CDS |
| GGGAGGTGGAGAATGATGAT+GGG | 0.577445 | 1.4:-65496999 | MS.gene071675:CDS |
| GAGAATCTCTTCATCCGTGT+TGG | 0.578676 | 1.4:+65497725 | None:intergenic |
| AATAAGCAAGACAATCTCCC+GGG | 0.581163 | 1.4:+65497508 | None:intergenic |
| AATGTGGTGAGATTGAAGAT+TGG | 0.584496 | 1.4:-65497312 | MS.gene071675:CDS |
| TGAAGTAGCTGAGGCGACCT+CGG | 0.591494 | 1.4:-65497289 | MS.gene071675:CDS |
| CCTTTCCCTAAATTAACCAC+CGG | 0.591698 | 1.4:+65497123 | None:intergenic |
| TCGGGAAATCCTTTATCGAA+CGG | 0.594692 | 1.4:+65497574 | None:intergenic |
| CAGCACGTTGCGAAGTGGAG+AGG | 0.601970 | 1.4:+65497655 | None:intergenic |
| TTAACCACCGGTCCCCAAGC+CGG | 0.602016 | 1.4:+65497135 | None:intergenic |
| GTTAAAAGTGCCTGTTAATG+TGG | 0.605844 | 1.4:-65497328 | MS.gene071675:CDS |
| ATTCTCTCTTACTTTGATAG+CGG | 0.609195 | 1.4:-65497708 | MS.gene071675:CDS |
| GAAAGGGTGGGAGAAATGGG+TGG | 0.611751 | 1.4:-65497163 | MS.gene071675:CDS |
| CCTTCCTCAGCTTTACACAC+CGG | 0.615461 | 1.4:+65497255 | None:intergenic |
| TGGGTGGTGTTACCGGCTTG+GGG | 0.620926 | 1.4:-65497147 | MS.gene071675:CDS |
| AAGGATTTCCCGAGTAGACG+CGG | 0.620983 | 1.4:-65497564 | MS.gene071675:CDS |
| CCGGTGTGTAAAGCTGAGGA+AGG | 0.623619 | 1.4:-65497255 | MS.gene071675:CDS |
| GAAGATTGGTGAAGTAGCTG+AGG | 0.639205 | 1.4:-65497298 | MS.gene071675:CDS |
| TGCTGCAGCGCGTTTCATTG+TGG | 0.640579 | 1.4:-65497634 | MS.gene071675:CDS |
| AGGCCACCTACTGAAAATGA+TGG | 0.653259 | 1.4:-65496865 | MS.gene071675:CDS |
| CATGGAAGGCTAATAATAGG+TGG | 0.655576 | 1.4:-65497065 | MS.gene071675:CDS |
| TGACACTCTTGTCGCCAACA+CGG | 0.658163 | 1.4:-65497739 | MS.gene071675:CDS |
| GTGTTTACAGAACTGATACA+TGG | 0.661658 | 1.4:+65498134 | None:intergenic |
| AGTAGCTGAGGCGACCTCGG+TGG | 0.686810 | 1.4:-65497286 | MS.gene071675:CDS |
| GTTGGTTTAAAGGTTCAAAG+GGG | 0.692675 | 1.4:-65496946 | MS.gene071675:CDS |
| TTTGCCGGTGTGTAAAGCTG+AGG | 0.704737 | 1.4:-65497259 | MS.gene071675:CDS |
| CACCGGCAAAACAACCACCG+AGG | 0.783907 | 1.4:+65497272 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATTTAGTAAAAGATGA+TGG | - | chr1.4:65498001-65498020 | MS.gene071675:intron | 15.0% |
| ! | TTTGTATTACAGACAAAGTA+AGG | - | chr1.4:65497490-65497509 | MS.gene071675:CDS | 25.0% |
| ATATGTTGAGTGAAGAAGTT+TGG | - | chr1.4:65498137-65498156 | MS.gene071675:intron | 30.0% | |
| ATTAAAAAGGAAGGTGAGTT+TGG | - | chr1.4:65497776-65497795 | MS.gene071675:intron | 30.0% | |
| ATTCTCTCTTACTTTGATAG+CGG | - | chr1.4:65497269-65497288 | MS.gene071675:CDS | 30.0% | |
| TATGTTGAGTGAAGAAGTTT+GGG | - | chr1.4:65498138-65498157 | MS.gene071675:intron | 30.0% | |
| ! | AAAGATGATGGTAATGATGT+TGG | - | chr1.4:65498013-65498032 | MS.gene071675:intron | 30.0% |
| ! | ATATCACCATCATTTTCAGT+AGG | + | chr1.4:65498121-65498140 | None:intergenic | 30.0% |
| ! | ATTTAAGGCGGTAATAAGAA+CGG | + | chr1.4:65496917-65496936 | None:intergenic | 30.0% |
| ! | GGAATGTAGTTATTGTTGTT+AGG | - | chr1.4:65498092-65498111 | MS.gene071675:intron | 30.0% |
| ! | TAAAGCTAGAAAAGTGGTTT+TGG | - | chr1.4:65497580-65497599 | MS.gene071675:CDS | 30.0% |
| !! | ATGTTGGTTTAAAGGTTCAA+AGG | - | chr1.4:65498029-65498048 | MS.gene071675:intron | 30.0% |
| !! | TGGTAATGATGTTGGTTTAA+AGG | - | chr1.4:65498021-65498040 | MS.gene071675:intron | 30.0% |
| !! | TGTTGGTTTAAAGGTTCAAA+GGG | - | chr1.4:65498030-65498049 | MS.gene071675:intron | 30.0% |
| AAATAAGCAAGACAATCTCC+CGG | + | chr1.4:65497473-65497492 | None:intergenic | 35.0% | |
| AATGTGGTGAGATTGAAGAT+TGG | - | chr1.4:65497665-65497684 | MS.gene071675:CDS | 35.0% | |
| ATGGGTGTTAATGAGTGTTT+AGG | - | chr1.4:65498070-65498089 | MS.gene071675:intron | 35.0% | |
| ATTGTGGAGAAGAGATATGA+TGG | - | chr1.4:65497359-65497378 | MS.gene071675:CDS | 35.0% | |
| CTATCAGCAACCACTAAAAT+AGG | + | chr1.4:65497950-65497969 | None:intergenic | 35.0% | |
| GTAATAAGAACGGTTGAGAT+TGG | + | chr1.4:65496907-65496926 | None:intergenic | 35.0% | |
| GTCTGATAAAGCTAGAAAAG+TGG | - | chr1.4:65497574-65497593 | MS.gene071675:CDS | 35.0% | |
| GTGTTTACAGAACTGATACA+TGG | + | chr1.4:65496846-65496865 | None:intergenic | 35.0% | |
| TAGACGCGGTGAAAAAAATT+GGG | - | chr1.4:65497427-65497446 | MS.gene071675:CDS | 35.0% | |
| TGGGTGTTAATGAGTGTTTA+GGG | - | chr1.4:65498071-65498090 | MS.gene071675:intron | 35.0% | |
| TGTTCAAGAAAAGCAGTTCT+TGG | + | chr1.4:65497536-65497555 | None:intergenic | 35.0% | |
| TTCAATCTCACCACATTAAC+AGG | + | chr1.4:65497662-65497681 | None:intergenic | 35.0% | |
| TTTAAAGGTTCAAAGGGGTT+CGG | - | chr1.4:65498036-65498055 | MS.gene071675:intron | 35.0% | |
| ! | CCTTCCTTTTTAATCTCAGA+AGG | + | chr1.4:65497770-65497789 | None:intergenic | 35.0% |
| ! | GAGAAGAGATATGATGGAAA+AGG | - | chr1.4:65497365-65497384 | MS.gene071675:CDS | 35.0% |
| ! | GTTGGTTTAAAGGTTCAAAG+GGG | - | chr1.4:65498031-65498050 | MS.gene071675:intron | 35.0% |
| !! | AGCACCTTCTGAGATTAAAA+AGG | - | chr1.4:65497763-65497782 | MS.gene071675:CDS | 35.0% |
| !! | CCTTCTGAGATTAAAAAGGA+AGG | - | chr1.4:65497767-65497786 | MS.gene071675:CDS | 35.0% |
| !! | GTTAAAAGTGCCTGTTAATG+TGG | - | chr1.4:65497649-65497668 | MS.gene071675:CDS | 35.0% |
| !! | TAAGGAAGAGCCTATTTTAG+TGG | - | chr1.4:65497937-65497956 | MS.gene071675:intron | 35.0% |
| !! | TCAAGGTTGTCGTATTTTGA+TGG | + | chr1.4:65497050-65497069 | None:intergenic | 35.0% |
| !!! | AGTTTTGATTATCATCTCCC+GGG | - | chr1.4:65497452-65497471 | MS.gene071675:CDS | 35.0% |
| !!! | CAAGGTTGTCGTATTTTGAT+GGG | + | chr1.4:65497049-65497068 | None:intergenic | 35.0% |
| !!! | CTATTTTAGTGGTTGCTGAT+AGG | - | chr1.4:65497948-65497967 | MS.gene071675:intron | 35.0% |
| !!! | GAGTTTTGATTATCATCTCC+CGG | - | chr1.4:65497451-65497470 | MS.gene071675:CDS | 35.0% |
| !!! | GTTTTTTGCTGTGTGATGAA+GGG | + | chr1.4:65496962-65496981 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGCTGTGTGATGA+AGG | + | chr1.4:65496963-65496982 | None:intergenic | 35.0% |
| AAAGCAGTTCTTGGATCAGA+AGG | + | chr1.4:65497527-65497546 | None:intergenic | 40.0% | |
| AATAAGCAAGACAATCTCCC+GGG | + | chr1.4:65497472-65497491 | None:intergenic | 40.0% | |
| ATAAGAACGGTTGAGATTGG+AGG | + | chr1.4:65496904-65496923 | None:intergenic | 40.0% | |
| CATGGAAGGCTAATAATAGG+TGG | - | chr1.4:65497912-65497931 | MS.gene071675:intron | 40.0% | |
| CCTTTCCCTAAATTAACCAC+CGG | + | chr1.4:65497857-65497876 | None:intergenic | 40.0% | |
| GTAGACGCGGTGAAAAAAAT+TGG | - | chr1.4:65497426-65497445 | MS.gene071675:CDS | 40.0% | |
| TAAAGCTGAGGAAGGAGAAA+GGG | - | chr1.4:65497730-65497749 | MS.gene071675:CDS | 40.0% | |
| TCGGGAAATCCTTTATCGAA+CGG | + | chr1.4:65497406-65497425 | None:intergenic | 40.0% | |
| TGCCATGGAAGGCTAATAAT+AGG | - | chr1.4:65497909-65497928 | MS.gene071675:intron | 40.0% | |
| ! | TCACCATCATTTTCAGTAGG+TGG | + | chr1.4:65498118-65498137 | None:intergenic | 40.0% |
| !! | CACCTATTATTAGCCTTCCA+TGG | + | chr1.4:65497914-65497933 | None:intergenic | 40.0% |
| !! | GGTTGGTATAGTTGTTTCTG+TGG | + | chr1.4:65497002-65497021 | None:intergenic | 40.0% |
| !!! | AGCTAGAAAAGTGGTTTTGG+AGG | - | chr1.4:65497583-65497602 | MS.gene071675:CDS | 40.0% |
| !!! | GGTTCGGTTTTGAAGGAAAT+GGG | - | chr1.4:65498052-65498071 | MS.gene071675:intron | 40.0% |
| !!! | TATTTTGATGGGAGAGGTGT+TGG | + | chr1.4:65497038-65497057 | None:intergenic | 40.0% |
| !!! | TTGTCGTATTTTGATGGGAG+AGG | + | chr1.4:65497044-65497063 | None:intergenic | 40.0% |
| !!! | TTTTTTTCACCGCGTCTACT+CGG | + | chr1.4:65497425-65497444 | None:intergenic | 40.0% |
| AGATCTAGCCCGTTCGATAA+AGG | - | chr1.4:65497394-65497413 | MS.gene071675:CDS | 45.0% | |
| AGGCCACCTACTGAAAATGA+TGG | - | chr1.4:65498112-65498131 | MS.gene071675:intron | 45.0% | |
| AGGTGAGTTTGGTATTGTGG+TGG | - | chr1.4:65497787-65497806 | MS.gene071675:intron | 45.0% | |
| CCAGTGGTTTCTTCAATGGT+GGG | + | chr1.4:65497170-65497189 | None:intergenic | 45.0% | |
| CCGGTGGTTAATTTAGGGAA+AGG | - | chr1.4:65497854-65497873 | MS.gene071675:intron | 45.0% | |
| CGGGAAATCCTTTATCGAAC+GGG | + | chr1.4:65497405-65497424 | None:intergenic | 45.0% | |
| GAAGATTGGTGAAGTAGCTG+AGG | - | chr1.4:65497679-65497698 | MS.gene071675:CDS | 45.0% | |
| GAGAATCTCTTCATCCGTGT+TGG | + | chr1.4:65497255-65497274 | None:intergenic | 45.0% | |
| GATACGATTCTGTTCAACGC+CGG | + | chr1.4:65497198-65497217 | None:intergenic | 45.0% | |
| GATGCCAGTGGTTTCTTCAA+TGG | + | chr1.4:65497174-65497193 | None:intergenic | 45.0% | |
| GGAAGGAGAAAGGGTGATTA+TGG | - | chr1.4:65497739-65497758 | MS.gene071675:CDS | 45.0% | |
| GGAAGGTGAGTTTGGTATTG+TGG | - | chr1.4:65497784-65497803 | MS.gene071675:intron | 45.0% | |
| GGCTAATAATAGGTGGCGTA+AGG | - | chr1.4:65497919-65497938 | MS.gene071675:intron | 45.0% | |
| GGTTGCTGATAGGAGTAAGA+GGG | - | chr1.4:65497958-65497977 | MS.gene071675:intron | 45.0% | |
| GTAAAGCTGAGGAAGGAGAA+AGG | - | chr1.4:65497729-65497748 | MS.gene071675:CDS | 45.0% | |
| TGAGTTTGGTATTGTGGTGG+CGG | - | chr1.4:65497790-65497809 | MS.gene071675:intron | 45.0% | |
| TGATGAAGGGTTGTTGAGGA+CGG | + | chr1.4:65496949-65496968 | None:intergenic | 45.0% | |
| TGGTTGCTGATAGGAGTAAG+AGG | - | chr1.4:65497957-65497976 | MS.gene071675:intron | 45.0% | |
| TGTGTGATGAAGGGTTGTTG+AGG | + | chr1.4:65496953-65496972 | None:intergenic | 45.0% | |
| ! | CGGCTGAGATTGATTTAAGG+CGG | + | chr1.4:65496929-65496948 | None:intergenic | 45.0% |
| ! | GGACGGCTGAGATTGATTTA+AGG | + | chr1.4:65496932-65496951 | None:intergenic | 45.0% |
| !! | CTCTCTTACTTTGATAGCGG+TGG | - | chr1.4:65497272-65497291 | MS.gene071675:CDS | 45.0% |
| !! | TCAAAGGGGTTCGGTTTTGA+AGG | - | chr1.4:65498045-65498064 | MS.gene071675:intron | 45.0% |
| !!! | AGGCGTTGTTGTGTCGTTTT+TGG | - | chr1.4:65497874-65497893 | MS.gene071675:intron | 45.0% |
| !!! | GGGTTCGGTTTTGAAGGAAA+TGG | - | chr1.4:65498051-65498070 | MS.gene071675:intron | 45.0% |
| !!! | TGGTTTTGGAGGAGTTGAGT+GGG | - | chr1.4:65497594-65497613 | MS.gene071675:CDS | 45.0% |
| !!! | TTTTTTCACCGCGTCTACTC+GGG | + | chr1.4:65497424-65497443 | None:intergenic | 45.0% |
| AAGGATTTCCCGAGTAGACG+CGG | - | chr1.4:65497413-65497432 | MS.gene071675:CDS | 50.0% | |
| ACGGTTGAGATTGGAGGAAG+AGG | + | chr1.4:65496898-65496917 | None:intergenic | 50.0% | |
| AGGGAGGTGGAGAATGATGA+TGG | - | chr1.4:65497977-65497996 | MS.gene071675:intron | 50.0% | |
| CCCACCATTGAAGAAACCAC+TGG | - | chr1.4:65497167-65497186 | MS.gene071675:CDS | 50.0% | |
| CCTTCCTCAGCTTTACACAC+CGG | + | chr1.4:65497725-65497744 | None:intergenic | 50.0% | |
| CGGTTGAGATTGGAGGAAGA+GGG | + | chr1.4:65496897-65496916 | None:intergenic | 50.0% | |
| GAAGAAACCACTGGCATCAC+CGG | - | chr1.4:65497176-65497195 | MS.gene071675:CDS | 50.0% | |
| GCCAGTGGTTTCTTCAATGG+TGG | + | chr1.4:65497171-65497190 | None:intergenic | 50.0% | |
| GGAGAAAGGGTGGGAGAAAT+GGG | - | chr1.4:65497811-65497830 | MS.gene071675:intron | 50.0% | |
| GGGAGGTGGAGAATGATGAT+GGG | - | chr1.4:65497978-65497997 | MS.gene071675:intron | 50.0% | |
| GGGGACCGGTGGTTAATTTA+GGG | - | chr1.4:65497849-65497868 | MS.gene071675:intron | 50.0% | |
| TACGACAACCTTGACATCCC+AGG | - | chr1.4:65497056-65497075 | MS.gene071675:CDS | 50.0% | |
| TGAAAAGCCTTCTCGGAGGA+GGG | + | chr1.4:65497144-65497163 | None:intergenic | 50.0% | |
| TGACACTCTTGTCGCCAACA+CGG | - | chr1.4:65497238-65497257 | MS.gene071675:CDS | 50.0% | |
| TGATAGGAGTAAGAGGGAGG+TGG | - | chr1.4:65497964-65497983 | MS.gene071675:intron | 50.0% | |
| TGCTGATAGGAGTAAGAGGG+AGG | - | chr1.4:65497961-65497980 | MS.gene071675:intron | 50.0% | |
| TGGGAGGTGAAAAGCCTTCT+CGG | + | chr1.4:65497151-65497170 | None:intergenic | 50.0% | |
| TGGGGACCGGTGGTTAATTT+AGG | - | chr1.4:65497848-65497867 | MS.gene071675:intron | 50.0% | |
| TTTGCCGGTGTGTAAAGCTG+AGG | - | chr1.4:65497718-65497737 | MS.gene071675:CDS | 50.0% | |
| TTTGGAGGAGTTGAGTGGGA+AGG | - | chr1.4:65497598-65497617 | MS.gene071675:CDS | 50.0% | |
| ! | GTGGTTTCTTCAATGGTGGG+AGG | + | chr1.4:65497167-65497186 | None:intergenic | 50.0% |
| ! | TGCGAGAGTTTTGCCATGGA+AGG | - | chr1.4:65497898-65497917 | MS.gene071675:intron | 50.0% |
| ! | TGGATGCGAGAGTTTTGCCA+TGG | - | chr1.4:65497894-65497913 | MS.gene071675:intron | 50.0% |
| !! | GGAGAAATGGGTGGTGTTAC+CGG | - | chr1.4:65497823-65497842 | MS.gene071675:intron | 50.0% |
| !! | GTATTGTGGTGGCGGAGAAA+GGG | - | chr1.4:65497798-65497817 | MS.gene071675:intron | 50.0% |
| !! | TTTGATGGGAGAGGTGTTGG+TGG | + | chr1.4:65497035-65497054 | None:intergenic | 50.0% |
| !!! | GTGGTTTTGGAGGAGTTGAG+TGG | - | chr1.4:65497593-65497612 | MS.gene071675:CDS | 50.0% |
| ATCACTTCCCTCCTCCGAGA+AGG | - | chr1.4:65497134-65497153 | MS.gene071675:CDS | 55.0% | |
| ATTCGTGCCATGCACCGAGA+CGG | + | chr1.4:65497103-65497122 | None:intergenic | 55.0% | |
| CAAGGATGTCGATGCGTCCT+GGG | + | chr1.4:65497076-65497095 | None:intergenic | 55.0% | |
| CCGGTGTGTAAAGCTGAGGA+AGG | - | chr1.4:65497722-65497741 | MS.gene071675:CDS | 55.0% | |
| CGGAGAAAGGGTGGGAGAAA+TGG | - | chr1.4:65497810-65497829 | MS.gene071675:intron | 55.0% | |
| GAAAGGGTGGGAGAAATGGG+TGG | - | chr1.4:65497814-65497833 | MS.gene071675:intron | 55.0% | |
| GACATCCTTGCCAACCGTCT+CGG | - | chr1.4:65497086-65497105 | MS.gene071675:CDS | 55.0% | |
| GAGGTGAAAAGCCTTCTCGG+AGG | + | chr1.4:65497148-65497167 | None:intergenic | 55.0% | |
| GTGAAAAGCCTTCTCGGAGG+AGG | + | chr1.4:65497145-65497164 | None:intergenic | 55.0% | |
| GTTGAGTGGGAAGGCTGAAG+AGG | - | chr1.4:65497607-65497626 | MS.gene071675:CDS | 55.0% | |
| TGAAGTAGCTGAGGCGACCT+CGG | - | chr1.4:65497688-65497707 | MS.gene071675:CDS | 55.0% | |
| TGCTGCAGCGCGTTTCATTG+TGG | - | chr1.4:65497343-65497362 | MS.gene071675:CDS | 55.0% | |
| !! | AATGGGTGGTGTTACCGGCT+TGG | - | chr1.4:65497828-65497847 | MS.gene071675:intron | 55.0% |
| !! | ATGGGTGGTGTTACCGGCTT+GGG | - | chr1.4:65497829-65497848 | MS.gene071675:intron | 55.0% |
| !! | GACCTCGGTGGTTGTTTTGC+CGG | - | chr1.4:65497703-65497722 | MS.gene071675:CDS | 55.0% |
| !! | GGTATTGTGGTGGCGGAGAA+AGG | - | chr1.4:65497797-65497816 | MS.gene071675:intron | 55.0% |
| ATGCACCGAGACGGTTGGCA+AGG | + | chr1.4:65497094-65497113 | None:intergenic | 60.0% | |
| CACCGGCAAAACAACCACCG+AGG | + | chr1.4:65497708-65497727 | None:intergenic | 60.0% | |
| CAGCACGTTGCGAAGTGGAG+AGG | + | chr1.4:65497325-65497344 | None:intergenic | 60.0% | |
| CGATGCGTCCTGGGATGTCA+AGG | + | chr1.4:65497067-65497086 | None:intergenic | 60.0% | |
| CGGAGGAGGGAAGTGATGAG+AGG | + | chr1.4:65497131-65497150 | None:intergenic | 60.0% | |
| GAGTGGGAAGGCTGAAGAGG+AGG | - | chr1.4:65497610-65497629 | MS.gene071675:CDS | 60.0% | |
| GCAAGGATGTCGATGCGTCC+TGG | + | chr1.4:65497077-65497096 | None:intergenic | 60.0% | |
| TGCAGCAGCACGTTGCGAAG+TGG | + | chr1.4:65497330-65497349 | None:intergenic | 60.0% | |
| TGGGAAGGCTGAAGAGGAGG+AGG | - | chr1.4:65497613-65497632 | MS.gene071675:CDS | 60.0% | |
| TTAACCACCGGTCCCCAAGC+CGG | + | chr1.4:65497845-65497864 | None:intergenic | 60.0% | |
| TTCAACGCCGGTGATGCCAG+TGG | + | chr1.4:65497186-65497205 | None:intergenic | 60.0% | |
| ! | TTGCCAACCGTCTCGGTGCA+TGG | - | chr1.4:65497093-65497112 | MS.gene071675:CDS | 60.0% |
| !! | AGGTGTTGGTGGTGGTCGGA+AGG | + | chr1.4:65497024-65497043 | None:intergenic | 60.0% |
| !! | GATGGGAGAGGTGTTGGTGG+TGG | + | chr1.4:65497032-65497051 | None:intergenic | 60.0% |
| !! | GGAGAGGTGTTGGTGGTGGT+CGG | + | chr1.4:65497028-65497047 | None:intergenic | 60.0% |
| !! | GGTGTTGGTGGTGGTCGGAA+GGG | + | chr1.4:65497023-65497042 | None:intergenic | 60.0% |
| !! | TGGGTGGTGTTACCGGCTTG+GGG | - | chr1.4:65497830-65497849 | MS.gene071675:intron | 60.0% |
| !! | TGTGGTGGCGGAGAAAGGGT+GGG | - | chr1.4:65497802-65497821 | MS.gene071675:intron | 60.0% |
| !! | TTGGTGGTGGTCGGAAGGGT+TGG | + | chr1.4:65497019-65497038 | None:intergenic | 60.0% |
| !! | TTGTGGTGGCGGAGAAAGGG+TGG | - | chr1.4:65497801-65497820 | MS.gene071675:intron | 60.0% |
| AGTAGCTGAGGCGACCTCGG+TGG | - | chr1.4:65497691-65497710 | MS.gene071675:CDS | 65.0% | |
| GTGCCATGCACCGAGACGGT+TGG | + | chr1.4:65497099-65497118 | None:intergenic | 65.0% | |
| !! | GGTGTTACCGGCTTGGGGAC+CGG | - | chr1.4:65497835-65497854 | MS.gene071675:intron | 65.0% |
| !! | GTTACCGGCTTGGGGACCGG+TGG | - | chr1.4:65497838-65497857 | MS.gene071675:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 65496834 | 65498165 | 65496834 | ID=MS.gene071675 |
| chr1.4 | mRNA | 65496834 | 65498165 | 65496834 | ID=MS.gene071675.t1;Parent=MS.gene071675 |
| chr1.4 | exon | 65498142 | 65498165 | 65498142 | ID=MS.gene071675.t1.exon1;Parent=MS.gene071675.t1 |
| chr1.4 | CDS | 65498142 | 65498165 | 65498142 | ID=cds.MS.gene071675.t1;Parent=MS.gene071675.t1 |
| chr1.4 | exon | 65496834 | 65497790 | 65496834 | ID=MS.gene071675.t1.exon2;Parent=MS.gene071675.t1 |
| chr1.4 | CDS | 65496834 | 65497790 | 65496834 | ID=cds.MS.gene071675.t1;Parent=MS.gene071675.t1 |
| Gene Sequence |
| Protein sequence |
